Query psy8078
Match_columns 105
No_of_seqs 118 out of 718
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:51:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 3.3E-25 1.1E-29 137.4 8.5 58 48-105 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 1.2E-24 4.2E-29 137.9 8.4 62 43-105 7-68 (68)
3 2lfh_A DNA-binding protein inh 99.9 1.1E-22 3.8E-27 128.9 2.2 50 52-101 18-67 (68)
4 4aya_A DNA-binding protein inh 99.8 1E-20 3.4E-25 127.2 6.7 54 52-105 29-82 (97)
5 3u5v_A Protein MAX, transcript 99.8 1.1E-19 3.7E-24 117.2 3.6 60 46-105 3-63 (76)
6 1nkp_A C-MYC, MYC proto-oncoge 99.7 2.3E-17 7.9E-22 108.7 7.5 57 46-102 4-60 (88)
7 1hlo_A Protein (transcription 99.7 6.4E-17 2.2E-21 104.3 7.4 58 46-104 10-67 (80)
8 1nlw_A MAD protein, MAX dimeri 99.7 8E-17 2.7E-21 104.5 7.5 54 49-102 2-55 (80)
9 1nkp_B MAX protein, MYC proto- 99.7 1.5E-16 5.2E-21 103.0 7.1 55 48-103 2-56 (83)
10 1am9_A Srebp-1A, protein (ster 99.5 1.6E-14 5.4E-19 93.7 7.3 56 47-104 5-60 (82)
11 1an4_A Protein (upstream stimu 99.5 2.7E-15 9.2E-20 93.1 1.8 56 48-103 5-63 (65)
12 1a0a_A BHLH, protein (phosphat 99.5 8.1E-15 2.8E-19 91.2 2.6 57 49-105 3-63 (63)
13 4h10_B Circadian locomoter out 99.4 6.8E-13 2.3E-17 84.5 8.3 55 47-103 7-61 (71)
14 4h10_A ARYL hydrocarbon recept 99.4 5.7E-13 2E-17 85.1 5.5 56 46-101 7-63 (73)
15 4ati_A MITF, microphthalmia-as 99.4 9.9E-13 3.4E-17 90.5 6.9 56 48-103 27-83 (118)
16 4f3l_A Mclock, circadian locom 98.8 7.7E-09 2.6E-13 80.4 6.7 53 48-102 12-64 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 7.4E-08 2.5E-12 75.8 5.4 54 48-101 13-67 (387)
18 4ath_A MITF, microphthalmia-as 98.3 2.7E-06 9.3E-11 55.4 6.5 42 61-102 5-47 (83)
19 3muj_A Transcription factor CO 94.7 0.073 2.5E-06 37.3 5.8 41 61-101 94-135 (138)
20 3mlp_A Transcription factor CO 77.5 0.42 1.5E-05 38.3 -0.2 39 61-99 320-359 (402)
21 2dn9_A DNAJ homolog subfamily 41.1 25 0.00084 20.7 3.0 16 57-72 47-62 (79)
22 1iur_A KIAA0730 protein; DNAJ 39.7 29 0.001 21.5 3.3 21 57-77 57-77 (88)
23 2kt9_A Probable 30S ribosomal 35.8 8.7 0.0003 25.9 0.2 38 64-101 45-82 (116)
24 1faf_A Large T antigen; J doma 31.1 35 0.0012 20.5 2.5 17 58-74 50-66 (79)
25 1pd7_B MAD1; PAH2, SIN3, eukar 30.5 38 0.0013 17.0 2.1 20 82-101 1-20 (26)
26 2guz_A Mitochondrial import in 27.1 42 0.0014 19.6 2.3 15 59-73 53-67 (71)
27 2yua_A Williams-beuren syndrom 25.3 67 0.0023 19.8 3.2 16 57-72 57-72 (99)
28 1p3q_Q VPS9P, vacuolar protein 23.4 1E+02 0.0034 17.8 3.4 23 56-78 5-27 (54)
29 2ctr_A DNAJ homolog subfamily 20.9 61 0.0021 19.5 2.3 16 57-72 46-61 (88)
30 2dmx_A DNAJ homolog subfamily 20.8 61 0.0021 19.6 2.3 16 58-73 51-66 (92)
31 3zy1_A Tumor protein 63; trans 20.8 83 0.0028 17.7 2.6 21 55-76 13-34 (46)
32 2cug_A Mkiaa0962 protein; DNAJ 20.3 64 0.0022 19.4 2.3 16 57-72 56-71 (88)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.92 E-value=3.3e-25 Score=137.45 Aligned_cols=58 Identities=43% Similarity=0.616 Sum_probs=55.6
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L~~ 105 (105)
+|..||++||.||++||.||+.||.+||+.+.++||||++||+.||+||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999974
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.91 E-value=1.2e-24 Score=137.91 Aligned_cols=62 Identities=37% Similarity=0.545 Sum_probs=57.2
Q ss_pred hhcHHHhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy8078 43 RATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105 (105)
Q Consensus 43 ~~~~~~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L~~ 105 (105)
.....+|.+||++||.||+.||+||+.||++||.. +++|+||++||+.||+||.+|+++|++
T Consensus 7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~-~~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC-TTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 44567899999999999999999999999999975 589999999999999999999999974
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-22 Score=128.89 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8078 52 HATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 52 an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~ 101 (105)
+|+|||.||+.||+||+.||++||++|.++|||||+||+.||+||.+|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999985
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=127.18 Aligned_cols=54 Identities=31% Similarity=0.535 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy8078 52 HATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105 (105)
Q Consensus 52 an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L~~ 105 (105)
...+||.||+.||.||+.||.+||+.+.++|||||+||+.||+||.+|+++|++
T Consensus 29 ~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 29 PVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 356679999999999999999999999999999999999999999999999974
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.77 E-value=1.1e-19 Score=117.23 Aligned_cols=60 Identities=32% Similarity=0.383 Sum_probs=49.4
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy8078 46 QKYRTAHATRERVRVEAFNSAFGELRKLLPT-LPPDKKLSKIEILRLAICYIAYLNNVLET 105 (105)
Q Consensus 46 ~~~R~~an~rER~R~~~in~af~~LR~~vP~-~~~~~klSKi~~Lr~Ai~YI~~L~~~L~~ 105 (105)
..+|..||++||.|+..||++|+.|+.+||. .+.++.+||++||+.||+||.+|++.|++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e 63 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE 63 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999994 55666669999999999999999998863
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.71 E-value=2.3e-17 Score=108.65 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=53.4
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy8078 46 QKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNV 102 (105)
Q Consensus 46 ~~~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~ 102 (105)
..+|..||..||.|+..||.+|+.|+.+||..+.+.|+||+.||..||+||.+|+..
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999988889999999999999999999875
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=6.4e-17 Score=104.33 Aligned_cols=58 Identities=31% Similarity=0.466 Sum_probs=52.4
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy8078 46 QKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLE 104 (105)
Q Consensus 46 ~~~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L~ 104 (105)
..+|..||.+||.|+..||.+|+.|+.+||..+ +.|+||++||+.||+||.+|+..++
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~ 67 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNH 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999864 4689999999999999999997653
No 8
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=8e-17 Score=104.54 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=51.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy8078 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNV 102 (105)
Q Consensus 49 R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~ 102 (105)
|..||..||.|+..||.+|+.|+++||.++.+.|+||+.||+.|++||..|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~ 55 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDS 55 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988899999999999999999999874
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.67 E-value=1.5e-16 Score=103.02 Aligned_cols=55 Identities=33% Similarity=0.488 Sum_probs=50.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVL 103 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L 103 (105)
+|..||..||.|+..||.+|+.|+.+||..+ +.|+||++||+.||+||..|+..+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~ 56 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKN 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999854 578999999999999999999654
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.54 E-value=1.6e-14 Score=93.73 Aligned_cols=56 Identities=34% Similarity=0.443 Sum_probs=51.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy8078 47 KYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLE 104 (105)
Q Consensus 47 ~~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L~ 104 (105)
.+|..||..||.|+..||++|.+|+.+||. .+.|++|++||..||+||.+|+..+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999996 46899999999999999999997653
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=2.7e-15 Score=93.11 Aligned_cols=56 Identities=30% Similarity=0.293 Sum_probs=49.8
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHHHHHHHHHHhh
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLPPD---KKLSKIEILRLAICYIAYLNNVL 103 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~~~---~klSKi~~Lr~Ai~YI~~L~~~L 103 (105)
+|..||..||.|+..||.+|+.|+.+||..... .+++|+.||..||+||..|+...
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467799999999999999999999999976543 58999999999999999998743
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=8.1e-15 Score=91.19 Aligned_cols=57 Identities=28% Similarity=0.275 Sum_probs=50.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy8078 49 RTAHATRERVRVEAFNSAFGELRKLLPTLP----PDKKLSKIEILRLAICYIAYLNNVLET 105 (105)
Q Consensus 49 R~~an~rER~R~~~in~af~~LR~~vP~~~----~~~klSKi~~Lr~Ai~YI~~L~~~L~~ 105 (105)
|..|+.-||.|+..||.+|+.|+.+||... ++.++||.+||..||+||..|++.+.+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~~ 63 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhhC
Confidence 667999999999999999999999999532 257999999999999999999987653
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=84.49 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=50.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy8078 47 KYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVL 103 (105)
Q Consensus 47 ~~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~L 103 (105)
..|..||..||.|+..||..|..|+..||. .+.|++|..||+.||+||..|+..+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 357789999999999999999999999994 4579999999999999999999764
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=85.11 Aligned_cols=56 Identities=34% Similarity=0.501 Sum_probs=49.8
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q psy8078 46 QKYRTAHATRERVRVEAFNSAFGELRKLLPTL-PPDKKLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 46 ~~~R~~an~rER~R~~~in~af~~LR~~vP~~-~~~~klSKi~~Lr~Ai~YI~~L~~ 101 (105)
..+|..||..||.|+..||.+|++|+.+||.. ....|++|++||+.||+||..|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999952 346899999999999999999864
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=9.9e-13 Score=90.52 Aligned_cols=56 Identities=30% Similarity=0.379 Sum_probs=46.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLP-PDKKLSKIEILRLAICYIAYLNNVL 103 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~-~~~klSKi~~Lr~Ai~YI~~L~~~L 103 (105)
.|..||..||.|+..||..|..|+.+||... .+.|++|+.||..||+||.+|+..+
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~ 83 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ 83 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999753 4679999999999999999998654
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.80 E-value=7.7e-09 Score=80.36 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=42.9
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNV 102 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~~ 102 (105)
.|..||..||+|+..||..|..|+.+|| ....||.|+.||+.||.||..|+.+
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4677999999999999999999999999 3567999999999999999999864
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.55 E-value=7.4e-08 Score=75.76 Aligned_cols=54 Identities=35% Similarity=0.498 Sum_probs=48.0
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy8078 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLP-PDKKLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 48 ~R~~an~rER~R~~~in~af~~LR~~vP~~~-~~~klSKi~~Lr~Ai~YI~~L~~ 101 (105)
.|..||..||+|+..||..|.+|+.+||... ...|+.|..||+.||.||..|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 4678999999999999999999999999522 45899999999999999998873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.26 E-value=2.7e-06 Score=55.38 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHh
Q psy8078 61 EAFNSAFGELRKLLPTL-PPDKKLSKIEILRLAICYIAYLNNV 102 (105)
Q Consensus 61 ~~in~af~~LR~~vP~~-~~~~klSKi~~Lr~Ai~YI~~L~~~ 102 (105)
..||..+.+|...||.. .++.+.+|-.||+.|++||.+|++.
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e 47 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE 47 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHH
Confidence 46999999999999963 4678999999999999999999763
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=94.70 E-value=0.073 Score=37.31 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHH
Q psy8078 61 EAFNSAFGELRKLLPTLPP-DKKLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 61 ~~in~af~~LR~~vP~~~~-~~klSKi~~Lr~Ai~YI~~L~~ 101 (105)
..|+-+|+.|.+.||-++. ..+|.|--||+.|.++...|-.
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~ 135 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG 135 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHC
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhC
Confidence 4589999999999998765 4899999999999999998753
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=77.52 E-value=0.42 Score=38.32 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHH
Q psy8078 61 EAFNSAFGELRKLLPTLPP-DKKLSKIEILRLAICYIAYL 99 (105)
Q Consensus 61 ~~in~af~~LR~~vP~~~~-~~klSKi~~Lr~Ai~YI~~L 99 (105)
..|.-+|+.|.++||-.|. ..+|.|--||+.|.+++..|
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 4588899999999997765 38999999999999999877
No 21
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.09 E-value=25 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8078 57 RVRVEAFNSAFGELRK 72 (105)
Q Consensus 57 R~R~~~in~af~~LR~ 72 (105)
..+...||.||+.|..
T Consensus 47 ~~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 47 KEKFSQLAEAYEVLSD 62 (79)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3568889999999865
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=39.75 E-value=29 Score=21.50 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q psy8078 57 RVRVEAFNSAFGELRKLLPTL 77 (105)
Q Consensus 57 R~R~~~in~af~~LR~~vP~~ 77 (105)
..+...||.||+.|.+..+-.
T Consensus 57 ~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 57 NEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 457899999999999988643
No 23
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=35.80 E-value=8.7 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8078 64 NSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 64 n~af~~LR~~vP~~~~~~klSKi~~Lr~Ai~YI~~L~~ 101 (105)
++|++.|+..|-+-+==....+|.+|-.|.+-|++=|+
T Consensus 45 ~DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe 82 (116)
T 2kt9_A 45 ADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQD 82 (116)
T ss_dssp SCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36888888887432222466789999999999998775
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=31.06 E-value=35 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhC
Q psy8078 58 VRVEAFNSAFGELRKLL 74 (105)
Q Consensus 58 ~R~~~in~af~~LR~~v 74 (105)
.++..||.||+.|...+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 47899999999998754
No 25
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=30.50 E-value=38 Score=17.00 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy8078 82 KLSKIEILRLAICYIAYLNN 101 (105)
Q Consensus 82 klSKi~~Lr~Ai~YI~~L~~ 101 (105)
++..|++|-.|.+|+.-...
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 35678999999999987654
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=27.12 E-value=42 Score=19.58 Aligned_cols=15 Identities=27% Similarity=0.071 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhh
Q psy8078 59 RVEAFNSAFGELRKL 73 (105)
Q Consensus 59 R~~~in~af~~LR~~ 73 (105)
.+..||.||+.|...
T Consensus 53 ~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 53 LATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 789999999999874
No 27
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.27 E-value=67 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8078 57 RVRVEAFNSAFGELRK 72 (105)
Q Consensus 57 R~R~~~in~af~~LR~ 72 (105)
..+...||.||+.|..
T Consensus 57 ~~~f~~i~~Ay~~L~d 72 (99)
T 2yua_A 57 AERFTRISQAYVVLGS 72 (99)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3568899999998854
No 28
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.45 E-value=1e+02 Score=17.82 Aligned_cols=23 Identities=9% Similarity=0.410 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q psy8078 56 ERVRVEAFNSAFGELRKLLPTLP 78 (105)
Q Consensus 56 ER~R~~~in~af~~LR~~vP~~~ 78 (105)
+|-+....+.++.+|+...|++.
T Consensus 5 ~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 5 KKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHcccCC
Confidence 45556677899999999999864
No 29
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.94 E-value=61 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8078 57 RVRVEAFNSAFGELRK 72 (105)
Q Consensus 57 R~R~~~in~af~~LR~ 72 (105)
..+...||.||+.|..
T Consensus 46 ~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 46 EAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 4678999999999975
No 30
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=61 Score=19.57 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8078 58 VRVEAFNSAFGELRKL 73 (105)
Q Consensus 58 ~R~~~in~af~~LR~~ 73 (105)
.+...||.||+.|..-
T Consensus 51 ~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 51 KKFKLVSEAYEVLSDS 66 (92)
T ss_dssp HHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHCCH
Confidence 5688999999999753
No 31
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=20.83 E-value=83 Score=17.74 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.5
Q ss_pred HHH-HHHHHHHHHHHHHHhhCCC
Q psy8078 55 RER-VRVEAFNSAFGELRKLLPT 76 (105)
Q Consensus 55 rER-~R~~~in~af~~LR~~vP~ 76 (105)
||+ ....+||++++ |...+|.
T Consensus 13 Re~yE~l~ki~e~LE-L~~~~pq 34 (46)
T 3zy1_A 13 RETYEMLLKIKESLE-LMQYLPQ 34 (46)
T ss_dssp HHHHHHHHHHHHHHH-GGGGSCH
T ss_pred hhhHHHHHHHHHHHH-HHhccch
Confidence 444 45678999998 7888874
No 32
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.30 E-value=64 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8078 57 RVRVEAFNSAFGELRK 72 (105)
Q Consensus 57 R~R~~~in~af~~LR~ 72 (105)
..+...||.||+.|..
T Consensus 56 ~~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 56 EDRFIQISKAYEILSN 71 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 4578999999999975
Done!