RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8078
(105 letters)
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 75.8 bits (187), Expect = 4e-20
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105
R RER R+ N+A LRK++P +KLSKIE LRLA YI L+ +L +
Sbjct: 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA
complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1
PDB: 1mdy_B*
Length = 68
Score = 70.5 bits (173), Expect = 5e-18
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 40 RRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
+R+ R A RER R+ N AF L++ + P+++L K+EILR AI YI L
Sbjct: 4 KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGL 62
Query: 100 NNVLE 104
+L
Sbjct: 63 QALLR 67
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 48.3 bits (115), Expect = 4e-09
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 49 RTAHATRERVRVEAFNSAFGEL-RKLLPTLPPDKKLSKIEILRLAICYIAYLNNVL 103
R H ER R N AF EL R L DK +K+ IL+ A+ I L +
Sbjct: 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 68
Score = 42.4 bits (99), Expect = 6e-07
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 38 RRRRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIA 97
+ A ++ N + LR+L+P +P +LS++EIL+ I YI
Sbjct: 4 HHHHHSHMGGGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYIL 63
Query: 98 YLNNV 102
L V
Sbjct: 64 DLQVV 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 40.0 bits (94), Expect = 6e-06
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
R H ER R +F LR +P L ++K K+ IL+ A YI +
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH,
PAS, circadian rhythm proteins, transcription-activato;
2.27A {Mus musculus}
Length = 361
Score = 41.9 bits (98), Expect = 7e-06
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 34 SREERRRRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAI 93
+ EE + + R + E+ R + FN EL +LP +K+ K +L+ +I
Sbjct: 2 AVEEDDKDKAK----RVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSI 55
Query: 94 CYI 96
++
Sbjct: 56 DFL 58
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 41.5 bits (97), Expect = 9e-06
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 34 SREERRRRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDK-KLSKIEILRLA 92
E + R + A + + E+ R + NS EL L+PT KL K+ +LR+A
Sbjct: 3 YAEHQGRIKNAREAHSQI----EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMA 58
Query: 93 ICYI 96
+ ++
Sbjct: 59 VQHM 62
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 38.5 bits (90), Expect = 2e-05
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTL---PPDKKLSKIEILRLAICYIAYL 99
R H ER R + N+ +L K++P SK IL A YI L
Sbjct: 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 36.5 bits (85), Expect = 1e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
R H ER R + +F LR +P+L +K S+ +IL A YI Y+
Sbjct: 13 RAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYM 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 36.2 bits (84), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
RTAH E+ + N EL+ L+ + KL+K +LR AI YI +L
Sbjct: 7 RTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFL 55
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 34.0 bits (78), Expect = 0.001
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNN 101
R+ H E+ R + +L+ L+P P + + + +L A +I L +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLED 54
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4);
transcription factor, basic helix loop helix; HET: DNA;
2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Length = 63
Score = 33.6 bits (77), Expect = 0.001
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDK----KLSKIEILRLAICYIAYLNNVLE 104
R +H E+ R A EL L+P + SK + A YI +L
Sbjct: 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62
Query: 105 T 105
T
Sbjct: 63 T 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 32.7 bits (75), Expect = 0.004
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNN 101
R H ER R + +F LR +P+L +K S+ +IL A YI Y+
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRR 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.17
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 40/103 (38%)
Query: 2 FLQREKFSETHGASRQNLFRLLDKSDGSTQALSREERRRRRRATQKYRTAHATRERVRVE 61
+L+ + H + + L + + +T + + + Y TA +R +
Sbjct: 95 YLEGN---DIHALAAK-----LLQENDTTLV-------KTKELIKNYITARIMAKRPFDK 139
Query: 62 AFNSA---------------FG----------ELRKLLPTLPP 79
NSA FG ELR L T
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Score = 25.8 bits (56), Expect = 3.3
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 57 RVRVEAFNSAFGELRK-----LLPTLPPDKKLSKIEILRLAICYIA 97
+ + F + + L L L + + ++ L YI
Sbjct: 85 NLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.52
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 36 EERRRRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKL 83
E+R R Q + + +R + + +LR+ L L P K +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQ--------PYLKLRQALLELRPAKNV 153
Score = 26.4 bits (57), Expect = 2.4
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 17 QNLFRLLDK-----SDGSTQALSR----EERRRRRRATQKYRTA-----HATRERVRVEA 62
Q L +D SD S+ R + RR ++ Y + + A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNA 261
Query: 63 FN 64
FN
Sbjct: 262 FN 263
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 27.6 bits (62), Expect = 0.78
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 21 RLLDKSDGSTQALSREERRRRRRATQKYRTAHATRER 57
+ L++ AL E R R + +
Sbjct: 313 QDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAAN 349
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 26.8 bits (60), Expect = 1.2
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 19 LFRLLDKSDGSTQALSREERRRRRRATQKYRTAHATRE 56
L + ++ AL E +R R A +
Sbjct: 331 LGAVFRQTRDIAAALREYEAQRCDRVRDLVLKARKRCD 368
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer,
hydrolase; 3.00A {Vibrio alginolyticus}
Length = 490
Score = 26.4 bits (58), Expect = 2.0
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 47 KYRTAHATRERVRVEAFNSAFGELRKLLPTLP 78
+ H+ E+V+++ + ++ LL +P
Sbjct: 456 TIKFPHSPDEKVKIDTVQLFWDQMVALLEAIP 487
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix,
acyltransferase, struct genomics; 2.15A {Bacillus
anthracis} PDB: 3igj_A*
Length = 190
Score = 25.9 bits (58), Expect = 2.1
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTL-PP 79
+R +R T+ Y A T + R N G + P
Sbjct: 25 VADRVEAKRLTRLYNEAVETGDERRFTLLNQLLGSSADGKAQINPD 70
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid;
2.50A {Clostridium difficile}
Length = 188
Score = 25.6 bits (57), Expect = 3.6
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
+ER ++ T+ + R + FG +
Sbjct: 24 VKEREYCKKLTRLFNNTLEDEYEKREDILRQLFGSV 59
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 25.4 bits (56), Expect = 3.8
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 19 LFRLLDKSDGSTQALSREERRRRRRATQ 46
L + K+ +L E R+ ++
Sbjct: 329 LAEVFTKNHDLRGSLQSWETRQLQQGHA 356
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 25.2 bits (56), Expect = 4.1
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
E+R R + ++ +H + R F +
Sbjct: 23 PEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATV 58
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix;
2.15A {Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
+R R R+ +Y + A +R + FG++
Sbjct: 21 SRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQV 56
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 25.3 bits (55), Expect = 4.9
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 17 QNLFRLLDKSDGSTQALSREER---RRRRRATQKYRTAHATRERVRVEAFNSAFGELRK 72
+ F +L+K+ S + EE RR A QK E V V+ + L+
Sbjct: 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKN 203
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
protein complex, sodium,calcium EX membrane protein;
HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
PDB: 3v5s_A*
Length = 320
Score = 25.3 bits (56), Expect = 5.0
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 73 LLPTLPPDKKLSKIEILRLAICYIAYL 99
LL K+ + + + YI +
Sbjct: 270 LLYLFAKYSKIGRWQGILFLALYIIAI 296
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus
kaustophilus structural genomics, PSI; 1.74A
{Geobacillus kaustophilus} PDB: 2ic7_A
Length = 185
Score = 24.8 bits (55), Expect = 5.2
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
+ER R RR + Y T R FG
Sbjct: 22 VKERERARRLVRLYNETLETEYDKRTGLLKELFGST 57
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 24.8 bits (55), Expect = 5.3
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 35 REERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
ER R + + + R E + F
Sbjct: 22 INERARAKDICFELNHTRPSATNKRKELIDQLFQTT 57
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 25.0 bits (55), Expect = 5.3
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 9 SETHGASRQNLFRLLDKSDGSTQALSREERRRRRRATQK----YRTAHATRERVRVEAFN 64
G + D + A RA T +V +
Sbjct: 10 GVDLGTENLYFQSMADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWK 69
Query: 65 SAFGELRKLLPTLPPDKKLSKIEILRLAICYIAY 98
EL++LL + S+ +IL I Y
Sbjct: 70 EP-EELKQLLDLELRSQGESQKQILERCRAVIRY 102
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 25.0 bits (55), Expect = 5.9
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 21 RLLDKSDGSTQALSREERRRRRRATQ 46
L ++ AL E RR A +
Sbjct: 335 AALARNADVAAALREYEEARRPTANK 360
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
hydrolase; 2.11A {Haemophilus somnus 129PT}
Length = 487
Score = 24.9 bits (54), Expect = 6.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 47 KYRTAHATRERVRVEAFNSAFGELRKLLPTLP 78
R AH+ E+V + A + + L +L +P
Sbjct: 454 TIRNAHSPDEKVHIPAVETYWKVLTGILAHIP 485
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional
regulation; 3.17A {Human immunodeficiency virus type 3}
Length = 115
Score = 24.5 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 25 KSDGSTQALSREERRRRRRATQK 47
+G+ QA R RRRR R Q+
Sbjct: 29 NPEGTRQA--RRNRRRRWRERQR 49
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 7.1
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 12 HGAS-----RQNLFRLLDKSDGSTQALSREERRRRRRATQKY 48
G L+ + + + + R ++ K+
Sbjct: 1450 KGGQAIVVHPDYLYGAITEDRYNEY---VAKVSAREKSAYKF 1488
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange
factor, signaling protein; HET: MSE; 2.20A {Arabidopsis
thaliana} PDB: 2nty_A* 2wbl_A
Length = 365
Score = 24.6 bits (53), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 65 SAFGELRKLLPTLPPDKK 82
S FGE KL P +P D++
Sbjct: 50 SIFGEQTKLQP-MPQDRQ 66
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A
{Human immunodeficiency virus type 1} PDB: 3mia_C*
1jfw_A 1tbc_A 1tiv_A 1k5k_A
Length = 86
Score = 23.8 bits (52), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 35 REERRRRRRATQKYRT 50
R++RR+RRRA Q +T
Sbjct: 49 RKKRRQRRRAHQNSQT 64
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 24.5 bits (54), Expect = 8.7
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 1 MFLQREKFSET--HGASRQNLFRLLDKSDGSTQALSREERRRRRRATQKYRTAHAT---- 54
+Q + ET L + L+K A + R + HAT
Sbjct: 152 FLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDY 211
Query: 55 RERVRVEAFNSAFGELRKL-LPTL 77
R ++ + +K+ P L
Sbjct: 212 RAAATIDLEHDELDMKQKISCPVL 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.368
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,566,709
Number of extensions: 82145
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 59
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)