RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8078
(105 letters)
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 53.0 bits (127), Expect = 2e-11
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 40 RRRRATQKYRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
+R+ R A RER R+ N AF L++ + P+++L K+EILR AI YI L
Sbjct: 4 KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGL 62
Query: 100 NNVLE 104
+L
Sbjct: 63 QALLR 67
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 46.8 bits (111), Expect = 3e-09
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLP----PDKKLSKIEILRLAICYIAYLNNVLE 104
R +H E+ R A EL L+P SK + A YI +L
Sbjct: 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62
Query: 105 T 105
T
Sbjct: 63 T 63
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 46.3 bits (110), Expect = 5e-09
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 45 TQKYRTAHATRERVRVEAFNSAFGELRKLLPTL---PPDKKLSKIEILRLAICYIAYL 99
+K R H ER R + N+ +L K++P SK IL A YI L
Sbjct: 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 46.4 bits (110), Expect = 8e-09
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLE 104
R+ H E+ R + +L+ L+P P + + + +L A +I L +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 46.1 bits (109), Expect = 1e-08
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105
R H ER R +F LR +P L ++K K+ IL+ A YI + +
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 41.8 bits (98), Expect = 5e-07
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLET 105
R H ER R + +F LR +P+L +K S+ +IL A YI Y+ T
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRRKNHT 58
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 35.3 bits (81), Expect = 1e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 49 RTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYLNNVLE 104
RTAH E+ + N EL+ L+ + KL+K +LR AI YI +L + +
Sbjct: 7 RTAHNAIEKRYRSSINDKIIELKDLVV--GTEAKLNKSAVLRKAIDYIRFLQHSNQ 60
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 31.2 bits (71), Expect = 0.004
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 61 EAFNSAFGELRKLLPTLPPDKKLSKIEILRLAICYIAYL 99
+ N EL+ L+ D K+ K +LR AI YI YL
Sbjct: 2 SSINDKIIELKDLVM--GTDAKMHKSGVLRKAIDYIKYL 38
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 26.8 bits (59), Expect = 0.48
Identities = 5/54 (9%), Positives = 15/54 (27%)
Query: 17 QNLFRLLDKSDGSTQALSREERRRRRRATQKYRTAHATRERVRVEAFNSAFGEL 70
Q L +S + +E + + + + +N + +
Sbjct: 355 QKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERV 408
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.9 bits (54), Expect = 1.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 49 RTAHATRERVRVEAFNSAFG 68
T+ A RE +E +++G
Sbjct: 12 GTSAALRETGVIEKLLTSYG 31
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 25.1 bits (54), Expect = 1.9
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 48 YRTAHATRERVRVEAFNSAFGELRKLLPTLPPDKKLSKIEILRL 91
Y+T + + V+ F F ++ L +K + +++ +
Sbjct: 163 YKTKYLKFNLLPVDDFLKLFDSYERVGNILELFEKPKERKVVVM 206
>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 228
Score = 24.3 bits (53), Expect = 3.3
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 31 QALSREERRRRRRATQKYRTAHATRERVRV-------EAFNSAFGELRKLLPTLPPDKKL 83
++S+ ER + R + +A ++ F +R L L D+ +
Sbjct: 160 SSVSKSERAHILQHVSSCRLEDLSTPNFVSPLETLMAKAIDAGF--IRDRLDLLKTDRGV 217
Query: 84 SKI 86
+ I
Sbjct: 218 ASI 220
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 24.6 bits (52), Expect = 3.4
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 14 ASRQNLFRLLDKSDGSTQALSREERRRRRRA 44
S N + + LS ++ R +A
Sbjct: 330 VSEDNPETYEEALKRFAKLLSDRKKLRANKA 360
>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId:
10335]}
Length = 221
Score = 23.6 bits (51), Expect = 5.3
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 31 QALSREERRRRRRATQKYRTAHATRERVRVE--------AFNSAFGELRKLLPTLPPDKK 82
+ LS E + R + Y + + + A N+ LR + ++
Sbjct: 157 RVLSMESKARLLSLVKDYAGLNKVWKVSEDKLAKVLLSTAVNNML--LRDRWDVVAKRRR 214
Query: 83 LSKI 86
+ I
Sbjct: 215 EAGI 218
>d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 167
Score = 23.5 bits (50), Expect = 6.5
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 45 TQKYRTAHATRERVRVEAFNSAFGELRKLL 74
+ R R +R+ +A L L
Sbjct: 135 HHEMRYGDIGRTEIRLATVRTALEMLIALN 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.368
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,810
Number of extensions: 15315
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 22
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)