Query psy8079
Match_columns 135
No_of_seqs 103 out of 1042
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:52:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rd1_A Putative outer membrane 83.0 1.9 6.5E-05 27.4 4.2 39 37-83 5-43 (62)
2 2k57_A Putative lipoprotein; s 82.2 1.9 6.4E-05 27.3 4.0 39 37-83 5-43 (61)
3 2rb6_A Uncharacterized protein 80.3 2.3 7.9E-05 26.9 3.9 39 37-83 5-43 (61)
4 3bdu_A Putative lipoprotein; X 79.6 1.7 5.8E-05 27.6 3.1 39 37-83 5-43 (62)
5 2jn0_A Hypothetical lipoprotei 74.8 2.4 8.3E-05 26.8 2.8 37 39-83 7-43 (61)
6 2ra2_A Putative lipoprotein; X 72.0 2.5 8.7E-05 26.9 2.4 39 37-83 6-44 (64)
7 1xvs_A Protein APAG; MCSG APC2 48.8 51 0.0018 23.1 6.1 21 62-82 92-112 (126)
8 2f1e_A Protein APAG; APAG prot 47.8 47 0.0016 23.3 5.8 21 62-82 93-113 (127)
9 1tza_A APAG protein, SOR45; st 45.9 41 0.0014 24.0 5.3 21 62-82 92-112 (134)
10 1xq4_A Protein APAG; all beta 45.1 49 0.0017 23.7 5.6 21 62-82 97-117 (139)
11 3p34_A Serine/threonine-protei 39.9 45 0.0015 25.8 5.0 21 34-58 58-78 (232)
12 1twu_A Hypothetical protein YY 34.8 27 0.00092 22.8 2.7 18 67-85 116-133 (139)
13 3ca8_A Protein YDCF; two domai 32.9 45 0.0015 26.0 4.0 33 86-118 221-253 (266)
14 3tue_A Tryparedoxin peroxidase 30.7 1E+02 0.0034 23.4 5.6 36 43-84 129-164 (219)
15 4gym_A Glyoxalase/bleomycin re 30.1 46 0.0016 22.0 3.3 17 69-85 117-133 (149)
16 3bid_A UPF0339 protein NMB1088 27.4 67 0.0023 19.9 3.4 22 27-48 5-26 (64)
17 3rri_A Glyoxalase/bleomycin re 23.4 72 0.0025 20.3 3.2 20 69-88 112-131 (135)
18 1q4k_B Serine/threonine-protei 22.4 1.5E+02 0.005 23.2 5.3 21 34-58 76-96 (259)
19 1b69_A Protein (integrase); in 21.0 88 0.003 19.9 3.0 18 29-46 17-34 (69)
20 3ega_A Pellino-2, protein pell 20.9 1.5E+02 0.0051 23.5 5.0 53 41-93 38-92 (263)
No 1
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=82.95 E-value=1.9 Score=27.39 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.5
Q ss_pred EEEecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 37 YSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 37 f~Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
|--.+.||....-.|.++.. .-.|.|+|.+.+|+..+|+
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGm~sY~D~~G~~~qIn 43 (62)
T 2rd1_A 5 YVMTTKNGQTIVTQGKPQLD--------KETGMTSYTDQEGNQREIN 43 (62)
T ss_dssp EEEEETTSCEEEEESCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEEc
Confidence 44567888888777776532 2579999999999998864
No 2
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=82.19 E-value=1.9 Score=27.32 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 37 YSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 37 f~Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
|--.+.||....-.|..+.. .-.|.|+|.+.+|+..+|+
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qIn 43 (61)
T 2k57_A 5 TVITLNDGREIQAVDTPKYD--------EESGFYEFKQLDGKQTRIN 43 (61)
T ss_dssp EEEEESSSCEEEESSCCEEC--------TTTCEEEEEBTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence 34467788877777766532 2579999999999998864
No 3
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=80.32 E-value=2.3 Score=26.90 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred EEEecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 37 YSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 37 f~Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
|--.+.||....-.|.++. -.-.|.|+|.+.+|+..+|+
T Consensus 5 yvitT~DG~~IvT~GKP~~--------D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2rb6_A 5 YIMSTKDGKMITSDSKPKL--------DKTTGMYLYYDEDGREVMIK 43 (61)
T ss_dssp EEEEETTSCEEEESSCCEE--------ETTTTEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcEEEcCCCccc--------cCCCCCEEEEcCCCCEEEEc
Confidence 4446778887777776552 22469999999999988864
No 4
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=79.55 E-value=1.7 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=29.1
Q ss_pred EEEecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 37 YSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 37 f~Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
|--.+.||....-.|.++.. .-.|.|+|.+.+|+..+|+
T Consensus 5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qIn 43 (62)
T 3bdu_A 5 YVLHTNDGRTIVAEGKPKVD--------DETGMISYTDAYGQQQQIN 43 (62)
T ss_dssp EEEEETTSCEEEEESCCEEC--------TTTSSEEEEBTTSCEEEEC
T ss_pred eEEEECCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEEc
Confidence 44567888888777776532 2468999999999988763
No 5
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=74.82 E-value=2.4 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=26.6
Q ss_pred EecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 39 FQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 39 Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
-.+.||....-.|.++. -.-.|.|+|.+.+|+..+|+
T Consensus 7 itT~DG~~IvT~GKP~~--------D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2jn0_A 7 MATKDGRMILTDGKPEI--------DDDTGLVSYHDQQGNAMQIN 43 (61)
T ss_dssp EEETTSCEEEBCCCCEE--------ETTTTEEEEEBTTSCEEEEE
T ss_pred EEeCCCcEEEcCCCccc--------cCCCCCEEEEcCCCCEEEEc
Confidence 45677776666665542 22469999999999988875
No 6
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=72.02 E-value=2.5 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=27.5
Q ss_pred EEEecCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEE
Q psy8079 37 YSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQ 83 (135)
Q Consensus 37 f~Ye~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~ 83 (135)
|--.+.||....-.|..+.. .-.|.|+|.+.+|+..+|+
T Consensus 6 yVitt~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn 44 (64)
T 2ra2_A 6 YVMHTNDGRSIVTDGKPQTD--------NDTGMISYKDANGNKQQIN 44 (64)
T ss_dssp EEEEETTSCEEECSSCCEEC--------TTTCSEEEECTTSCEEEEC
T ss_pred EEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence 44467778776666665432 2468999999999988763
No 7
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=48.82 E-value=51 Score=23.13 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.6
Q ss_pred ccceEEEEEEEECCCCCEEEE
Q psy8079 62 EVQVAQGAYTYTGADGNPYSL 82 (135)
Q Consensus 62 ~~~~v~GsYsy~~pdG~~~~V 82 (135)
....++|+|.++++||....|
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v 112 (126)
T 1xvs_A 92 PVGVMQGQYLMIDEQGESFTV 112 (126)
T ss_dssp SEEEEEEEEEEECTTSCEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEE
Confidence 446899999999999997665
No 8
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=47.81 E-value=47 Score=23.33 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.6
Q ss_pred ccceEEEEEEEECCCCCEEEE
Q psy8079 62 EVQVAQGAYTYTGADGNPYSL 82 (135)
Q Consensus 62 ~~~~v~GsYsy~~pdG~~~~V 82 (135)
....++|+|.++++||....|
T Consensus 93 p~G~M~G~y~m~~~~G~~F~v 113 (127)
T 2f1e_A 93 EQGQMQGHYDMVADDGTEFIA 113 (127)
T ss_dssp SCEEEEEEEEEEETTCCEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEE
Confidence 447899999999999987665
No 9
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=45.91 E-value=41 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=17.6
Q ss_pred ccceEEEEEEEECCCCCEEEE
Q psy8079 62 EVQVAQGAYTYTGADGNPYSL 82 (135)
Q Consensus 62 ~~~~v~GsYsy~~pdG~~~~V 82 (135)
..+.++|+|.++++||....|
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v 112 (134)
T 1tza_A 92 PFGIMYGTYGMVSESGEHFNA 112 (134)
T ss_dssp SEEEEEEEEEEEETTCCEEEE
T ss_pred CceEEEEEEEEEECCCCEEEE
Confidence 456899999999999987665
No 10
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=45.06 E-value=49 Score=23.69 Aligned_cols=21 Identities=24% Similarity=0.697 Sum_probs=17.5
Q ss_pred ccceEEEEEEEECCCCCEEEE
Q psy8079 62 EVQVAQGAYTYTGADGNPYSL 82 (135)
Q Consensus 62 ~~~~v~GsYsy~~pdG~~~~V 82 (135)
..+.++|+|.++++||....|
T Consensus 97 p~G~M~G~y~m~~~~G~~F~v 117 (139)
T 1xq4_A 97 PIGTMRGTYHCVGENGIPFEV 117 (139)
T ss_dssp SEEEEEEEEEEEETTSCEEEE
T ss_pred CceEEEEEEEEEeCCCCEEEE
Confidence 446899999999999986665
No 11
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=39.86 E-value=45 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.4
Q ss_pred CeeEEEecCCCceEEEeeeeccCCC
Q psy8079 34 SYQYSFQTSNGIAAQESGFLKNAGN 58 (135)
Q Consensus 34 ~Y~f~Ye~~dG~~~~E~G~~~~~G~ 58 (135)
+|-|+|.++||. .|.+-|.++
T Consensus 58 KYG~GYqLsdgs----vGVlFND~T 78 (232)
T 3p34_A 58 KYGLGYQLCDNS----VGVLFNDST 78 (232)
T ss_dssp TTEEEEEETTSC----EEEEETTSC
T ss_pred ccceEEEecCCc----EEEEEcCCc
Confidence 599999999998 698888776
No 12
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=34.79 E-value=27 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.1
Q ss_pred EEEEEEECCCCCEEEEEEE
Q psy8079 67 QGAYTYTGADGNPYSLQYT 85 (135)
Q Consensus 67 ~GsYsy~~pdG~~~~V~Y~ 85 (135)
.|.| +.||||..+.+...
T Consensus 116 ~g~~-~~DPdG~~iel~~~ 133 (139)
T 1twu_A 116 GGVT-IEDPDGWRIVFMNS 133 (139)
T ss_dssp SEEE-EECTTCCEEEEESS
T ss_pred CCeE-EECCCCCEEEEEEc
Confidence 3558 99999999887643
No 13
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=32.85 E-value=45 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=25.4
Q ss_pred eCCCCccccCCCCCCCCCChHHHHHHHHHHHcC
Q psy8079 86 ADEEGFKPSANYLPTPPPIPAEIVKALEFLASQ 118 (135)
Q Consensus 86 ADenGf~~~g~~lP~~pp~p~~i~~al~~~~~~ 118 (135)
-|+|||-|.+.-.=...+||++|..|-+.+.++
T Consensus 221 ~~~~gYgp~~~gf~~~~~iP~~V~~A~~~l~~~ 253 (266)
T 3ca8_A 221 DDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHD 253 (266)
T ss_dssp CSTTSSSTTTTCSSCCCCCCHHHHHHHHHHHTC
T ss_pred hcccccCccCCCccccCcCCHHHHHHHHHHHHh
Confidence 568999998876555567999999887777654
No 14
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=30.71 E-value=1e+02 Score=23.35 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=22.2
Q ss_pred CCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEEE
Q psy8079 43 NGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQY 84 (135)
Q Consensus 43 dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~Y 84 (135)
++.....-|.+. +..++..+|.| .|||||+++.+.+
T Consensus 129 ~~~va~~yGv~~-----~~~g~~~R~tF-iIDp~g~Ir~~~~ 164 (219)
T 3tue_A 129 TKNIARSYGVLE-----ESQGVAYRGLF-IIDPHGMLRQITV 164 (219)
T ss_dssp TSHHHHHTTCEE-----TTTTEECEEEE-EECTTSBEEEEEE
T ss_pred ccHHHHHcCCcc-----cCCCeeEEEEE-EECCCCeEEEEEE
Confidence 444444445544 33456778886 6888888877643
No 15
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=30.07 E-value=46 Score=21.99 Aligned_cols=17 Identities=12% Similarity=0.446 Sum_probs=13.9
Q ss_pred EEEEECCCCCEEEEEEE
Q psy8079 69 AYTYTGADGNPYSLQYT 85 (135)
Q Consensus 69 sYsy~~pdG~~~~V~Y~ 85 (135)
+..|.||||..+.|.|.
T Consensus 117 ~~~f~DPDGn~iEi~~~ 133 (149)
T 4gym_A 117 GRSFHDLDGHLWEVMWM 133 (149)
T ss_dssp EEEEECTTCCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEE
Confidence 34578999999999875
No 16
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=27.37 E-value=67 Score=19.93 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=16.9
Q ss_pred cccCCCCCeeEEEecCCCceEE
Q psy8079 27 TQVNPDGSYQYSFQTSNGIAAQ 48 (135)
Q Consensus 27 ~~~~~dG~Y~f~Ye~~dG~~~~ 48 (135)
...+.+|.|.|....+||...-
T Consensus 5 i~~~~~G~frfrLka~NGevI~ 26 (64)
T 3bid_A 5 IYKDAKGEYRWRLKAANHEIIA 26 (64)
T ss_dssp EEECTTSCEEEEEECTTSCEEE
T ss_pred EEECCCCCEEEEEEeCCCCEEE
Confidence 3456788999999999987654
No 17
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=23.37 E-value=72 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.3
Q ss_pred EEEEECCCCCEEEEEEEeCC
Q psy8079 69 AYTYTGADGNPYSLQYTADE 88 (135)
Q Consensus 69 sYsy~~pdG~~~~V~Y~ADe 88 (135)
++.+.||||..+.+....|+
T Consensus 112 ~~~~~DPdGn~iel~~~~~~ 131 (135)
T 3rri_A 112 TFFLIDPSNNLLEFKYYFDD 131 (135)
T ss_dssp EEEEECTTCCEEEEEEESSG
T ss_pred EEEEECCCCCEEEEEEECCh
Confidence 56788999999998777664
No 18
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=22.43 E-value=1.5e+02 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.9
Q ss_pred CeeEEEecCCCceEEEeeeeccCCC
Q psy8079 34 SYQYSFQTSNGIAAQESGFLKNAGN 58 (135)
Q Consensus 34 ~Y~f~Ye~~dG~~~~E~G~~~~~G~ 58 (135)
.|-|+|.++||. .|.+-+.++
T Consensus 76 KYG~GYqLsdgs----vGvlFND~T 96 (259)
T 1q4k_B 76 KYGLGYQLCDNS----VGVLFNDST 96 (259)
T ss_dssp TTEEEEEETTSC----EEEEETTSC
T ss_pred ccceeEEecCCc----EEEEEeCCc
Confidence 599999999998 788887665
No 19
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=20.97 E-value=88 Score=19.90 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.6
Q ss_pred cCCCCCeeEEEecCCCce
Q psy8079 29 VNPDGSYQYSFQTSNGIA 46 (135)
Q Consensus 29 ~~~dG~Y~f~Ye~~dG~~ 46 (135)
+..||.|.|.|...+|..
T Consensus 17 qR~dG~Y~yry~d~~Gkr 34 (69)
T 1b69_A 17 QRKDGRYLYKYIDSFGEP 34 (69)
T ss_dssp ECSSSCEEEEEECTTSSE
T ss_pred EccCCcEEEEEEcCCCCE
Confidence 446788888887777754
No 20
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=20.87 E-value=1.5e+02 Score=23.55 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=34.7
Q ss_pred cCCCceEEEeeeeccCCCCCcccceEEEEEEEECCCCCEEEEEEEeCCC--Cccc
Q psy8079 41 TSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQYTADEE--GFKP 93 (135)
Q Consensus 41 ~~dG~~~~E~G~~~~~G~~~~~~~~v~GsYsy~~pdG~~~~V~Y~ADen--Gf~~ 93 (135)
.+||++....=..........-....+-|-||+..-.+.+.|.|+.|.+ =||+
T Consensus 38 ~aNGVkpS~~~~v~~p~~~kav~~~~~Hsisytlsr~~~VvVeY~~D~~tDMFQI 92 (263)
T 3ega_A 38 KANGVKPSTVHMISTPQASKAISCKGQHSISYTLSRNQTVVVEYTHDKDTDMFQV 92 (263)
T ss_dssp SCCEEEEEEEEEEECCTTCCCCCBTTBEEEEEECSSSEEEEEEEEEETTEEEEEE
T ss_pred ccCCccccceEEecCcccchhhhccccceEEEEecCCceeeeeeecCCCcchhhh
Confidence 4678776554444322221111234578899999999999999999965 5666
Done!