RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8079
         (135 letters)



>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein.  Many insect
          cuticular proteins include a 35-36 amino acid motif
          known as the R&R consensus. The extensive conservation
          of this region led to the suggestion that it functions
          to bind chitin. Provocatively, it has no sequence
          similarity to the well-known cysteine-containing
          chitin-binding domain found in chitinases and some
          peritrophic membrane proteins. Chitin binding has been
          shown experimentally for this region. Thus arthropods
          have two distinct classes of chitin binding proteins,
          those with the chitin-binding domain found in lectins,
          chitinases and peritrophic membranes (cysCBD) and those
          with the cuticular protein chitin-binding domain
          (non-cysCBD).
          Length = 51

 Score = 58.8 bits (143), Expect = 7e-13
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 35 YQYSFQTSNGIAAQESGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQYTADEEGF 91
          Y + ++TS+G   +E          E +  V +G+Y+Y   DG   ++ Y ADE GF
Sbjct: 1  YSFGYETSDGKTQEEGR------GTEDDGGVVKGSYSYVDPDGKLRTVTYVADENGF 51


>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
          Length = 593

 Score = 28.4 bits (64), Expect = 1.2
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 16/76 (21%)

Query: 52  FLKNAGNPEA-------------EVQVAQGAYTYT-GADGNPYSLQYTA--DEEGFKPSA 95
           FL+N  NP A                   G+ TYT   +G  Y ++ +   D     P+A
Sbjct: 447 FLENRHNPAAFEPVPQAEAAQPAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAA 506

Query: 96  NYLPTPPPIPAEIVKA 111
                     A    A
Sbjct: 507 PAAAPAAAAAAAPAAA 522


>gnl|CDD|221241 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This
           family of proteins are functionally uncharacterized.
           This family is found in bacteria and eukaryotes. This
           presumed domain is typically between 143 to 227 amino
           acids in length.
          Length = 145

 Score = 26.9 bits (60), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 107 EIVKALEFLASQPKIDYDDK 126
           E+  +LEFLA   ++D ++K
Sbjct: 116 EVELSLEFLAESSEVDDEEK 135


>gnl|CDD|234237 TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC
           family.  The protein SO_1778 (MtrC) of Shewanella
           oneidensis MR-1, and its paralog SO_1779 (OmcA), with
           which it intteracts, are large decaheme proteins, about
           900 amino acids in length, involved in the use of
           manganese [Mn(III/IV)] and iron [Fe(III)] as terminal
           electron acceptors. This model represents these and
           similar decaheme proteins, found also in Rhodoferax
           ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966,
           and a few other bacterial species [Energy metabolism,
           Electron transport].
          Length = 659

 Score = 26.0 bits (57), Expect = 7.6
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 14/64 (21%)

Query: 30  NPDGSYQYSFQTSNGIAAQESG--------------FLKNAGNPEAEVQVAQGAYTYTGA 75
           N DGSY Y+F+T    AA                    +NA N      VA   + +  A
Sbjct: 85  NGDGSYTYTFKTDITSAANTGNVAFDPTATHRVGIQLGRNAVNGTLGAPVANPVFDFIPA 144

Query: 76  DGNP 79
            G P
Sbjct: 145 GGAP 148


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,967,638
Number of extensions: 601313
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 20
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)