RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8079
(135 letters)
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 30.0 bits (65), Expect = 0.23
Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 4 AAPQNYAAQPQYQTTPATILQQDTQVNPDGSYQYSFQTSNGIAAQESGFLKNAGNPEAEV 63
Q + T V+ G Y+Y+FQT N L +P
Sbjct: 149 EVKFTPGDAIQANIESSCKTTCLTVVD-SGVYRYTFQT-NLSTLPAIEGLDLTYDPTLIH 206
Query: 64 QVAQGAYTYTGADGNPYSLQYTADEEGFKPSANYLPTPPPIPAEIVKA 111
++ T D + F PS N+ +V
Sbjct: 207 RITLELQTDGSKDAKLVNSHID-----FLPSDNFRVAKETETRTVVDL 249
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 28.1 bits (63), Expect = 0.82
Identities = 6/34 (17%), Positives = 8/34 (23%)
Query: 55 NAGNPEAEVQVAQGAYTYTGADGNPYSLQYTADE 88
AG+ + DG P D
Sbjct: 194 GAGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDT 227
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase
unready state, oxidoreductase; 1.83A {Desulfovibrio
fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Length = 264
Score = 27.7 bits (61), Expect = 1.0
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 20/83 (24%)
Query: 59 PEAEVQVAQGAYTYTG----ADGNPYSLQYTADEEGFKPSANYLPTP-------PPIPAE 107
+A+ + G + G A NP K + L PP P
Sbjct: 103 AKAKGIICIGTCSAYGGVQKAKPNP---------SQAKGVSEALGVKTINIPGCPPNPIN 153
Query: 108 IVKALEFLASQPKIDYDDKGFPL 130
V A+ + ++ D D+ G P
Sbjct: 154 FVGAVVHVLTKGIPDLDENGRPK 176
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 50 SGFLKNAGNPEAEVQVAQGAYTYTGADGNPYSLQYTADEEGFKPSANYLPTPPP------ 103
+G + N GNP V + A +A + +
Sbjct: 267 TGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQN 326
Query: 104 -IPAEIVKALEFLASQPKIDYDD 125
+P +I ++ L P+ +DD
Sbjct: 327 RVP-KIENTMQELGWAPQFTFDD 348
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A
{Mycobacterium abscessus}
Length = 301
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 85 TADEEGFKPSANYLPTPPPIPAEIVKAL 112
T E G+ +++ PPP+P E+ A
Sbjct: 252 TGPESGWDRASD--TPPPPLPDEVAVAT 277
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 25.1 bits (55), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 87 DEEGFKPSANYLPTPPPIPAEIVKAL-EFLASQP 119
D +GF P+A E+V AL ++ P
Sbjct: 2 DRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSP 35
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 55 NAGNPEAEVQVAQGAYTYTGADGNPYSLQYTAD 87
AG + T DG P Y AD
Sbjct: 195 GAGGGIHAMHSHGHDMLVTHKDGLPLDSPYYAD 227
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 25.8 bits (57), Expect = 5.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 106 AEIVKALEFLASQPKIDYDD 125
AEIV AL++L S+ + Y D
Sbjct: 255 AEIVSALDYLHSEKNVVYRD 274
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Erwinia
carotovora}
Length = 157
Score = 25.5 bits (55), Expect = 5.9
Identities = 5/51 (9%), Positives = 14/51 (27%)
Query: 59 PEAEVQVAQGAYTYTGADGNPYSLQYTADEEGFKPSANYLPTPPPIPAEIV 109
+ Y + ++ +T D G + + P+ +
Sbjct: 54 RLLKHDFPNNRYEFWEEGATGPTILWTPDNPGIELPTDTAHGEQPVIPSAI 104
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG
MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A*
2aey_A* 2aez_A*
Length = 543
Score = 25.6 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 72 YTGADGNPYSLQYTA---------DEEGFKPSANYLPTPPP 103
YTG+D +Q A E K N L TPP
Sbjct: 98 YTGSDSKSRQVQDLAWPKNLSDPFLREWVKHPKNPLITPPE 138
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 25.5 bits (56), Expect = 7.3
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 112 LEFLASQPKIDYDDKGFPLGQRRF 135
L+ DY PLG RRF
Sbjct: 332 LKHDMQGSAPDYRHWQIPLG-RRF 354
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding,
oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
2.04A {Desulfovibrio vulgaris}
Length = 317
Score = 25.4 bits (55), Expect = 8.0
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 59 PEAEVQVAQGAYTYTG----ADGNPY---SLQYTADEEGFKPSANYLPTPPPIPAEIVKA 111
P A +A G G A+G+ ++ + G K +P PP P IV
Sbjct: 144 PNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGT 203
Query: 112 LEFLASQPKIDYDDKGFP 129
+ K + + G
Sbjct: 204 VVLALDAIKKNGLEGGLA 221
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 25.5 bits (56), Expect = 8.3
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 121 IDYDDKGFPLGQRRF 135
D+ PL RRF
Sbjct: 348 TDFMHWQIPLS-RRF 361
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 25.3 bits (56), Expect = 8.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 65 VAQGAYTYTGADGNPYSLQYTAD 87
V + A +YTG +P +Y+
Sbjct: 239 VVEAAISYTGDVADPSRTKYSLQ 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.375
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,069,229
Number of extensions: 113182
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 25
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.9 bits)