RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8079
         (135 letters)



>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 29.9 bits (67), Expect = 0.075
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 12/79 (15%)

Query: 59  PEAEVQVAQGAYTYTGADGNPYSLQYTADEEGFKPSANYLPTP-------PPIPAEIVKA 111
            +A+  +  G        G     +        K  +  L          PP P   V A
Sbjct: 100 AKAKGIICIGT---CSPYGGVQKAKPNPS--QAKGVSEALGVKTINIPGCPPNPINFVGA 154

Query: 112 LEFLASQPKIDYDDKGFPL 130
           +  + ++   D D+ G P 
Sbjct: 155 VVHVLTKGIPDLDENGRPK 173


>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 261

 Score = 25.3 bits (55), Expect = 2.3
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 17/83 (20%)

Query: 59  PEAEVQVAQGA-----------YTYTGADGNPYSLQYTADEEGFKPSANYLPTPPPIPAE 107
           P+A+  +A G               TG  G   +L      +    + N +   PP P  
Sbjct: 98  PKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEAL-----GKLGVKAIN-IAGCPPNPMN 151

Query: 108 IVKALEFLASQPKIDYDDKGFPL 130
            V  +  L ++   + D +G P+
Sbjct: 152 FVGTVVHLLTKGMPELDKQGRPV 174


>d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus
           thermophilus [TaxId: 274]}
          Length = 132

 Score = 24.6 bits (53), Expect = 3.8
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 101 PPPIPAEIVKALEFLASQP 119
           P P+P  I + +  L  +P
Sbjct: 114 PAPLPEAIRERIRALEGRP 132


>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
           cruzi [TaxId: 5693]}
          Length = 412

 Score = 24.8 bits (52), Expect = 5.1
 Identities = 4/23 (17%), Positives = 7/23 (30%)

Query: 98  LPTPPPIPAEIVKALEFLASQPK 120
           L       A  +K L+      +
Sbjct: 42  LDKNLLTSAAQIKKLKEAIDSQE 64


>d2h1ta1 b.178.1.1 (A:2-187) Hypothetical protein PA1994
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 186

 Score = 24.0 bits (52), Expect = 5.8
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 66  AQGAYTYTGADGNPYSLQYTADEEGF 91
               Y Y   +G+ +      DE+G 
Sbjct: 150 DASHYLYENLEGSAFKAVLLVDEQGL 175


>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 71

 Score = 23.3 bits (50), Expect = 6.4
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 22 ILQQDTQVNPDGSYQYSFQTSNG 44
          IL+       DG Y Y +  S G
Sbjct: 10 ILKTGESQRKDGRYLYKYIDSFG 32


>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 259

 Score = 24.0 bits (51), Expect = 6.8
 Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 7/47 (14%)

Query: 86  ADEEGFKPSANYLPTPPPI-PAEIVKALEFLASQPK------IDYDD 125
            D E              +      + L  L  +        +D+ D
Sbjct: 213 KDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHVDFYD 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,303
Number of extensions: 21261
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 10
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.6 bits)