BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8080
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M +DMQ+ AV+ A + +EKYNIE+++A ++K+ FD Y P W C VGRNF
Sbjct: 3 DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
Query: 210 GSYVSYD-DFYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M +DMQ+ AV+ A + +EKYNIE+++A ++K+ FD Y P W C VGRNF
Sbjct: 6 DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 65
Query: 210 GSYVSYD-DFYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 66 GSYVTHETKHFIYFYLGQVAILLFK 90
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M ++MQ+ +V A + LEKYNIE+++A H+K+ FD Y P W C VGRNF
Sbjct: 3 DRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNF 62
Query: 210 GSYVSYD-DFYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M +DMQ+ AV+ A + +EKYNIE+++A ++K+ FD Y P W C VGRNF
Sbjct: 8 DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 67
Query: 210 GSYVSYD-DFYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 68 GSYVTHETKHFIYFYLGQVAILLFK 92
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 99.4 bits (246), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 146 LKAENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTV 205
+ ++ A+IK M ++MQ+ AV+ A + LEKYNIE+++A ++K+ FD Y P W C V
Sbjct: 1 MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 206 GRNFGSYVSYDD-FYTYFYLGKVAILLLQ 233
GRNFGSYV+++ + YFYLG+VAILL +
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 99.0 bits (245), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M ++MQ+ AV+ A + LEKYNIE+++A ++K+ FD Y P W C VGRNF
Sbjct: 3 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
Query: 210 GSYVSYDD-FYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 63 GSYVTHETRHFIYFYLGQVAILLFK 87
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 153 ALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSY 212
A+IK M ++MQ+ +V A + LEKYNIE+++A H+K+ FD Y P W C VGRNFGSY
Sbjct: 2 AVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSY 61
Query: 213 VSYD-DFYTYFYLGKVAILLLQ 233
V+++ + YFYLG+VAILL +
Sbjct: 62 VTHETKHFIYFYLGQVAILLFK 83
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M ++MQ+ AV+ A + LEKYNIE+++A ++K+ FD Y P W C VGRNF
Sbjct: 3 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
Query: 210 GSYVSYD-DFYTYFYLGKVAILLLQ 233
GSYV+++ + YFYLG+VAILL +
Sbjct: 63 GSYVTHETRHFIYFYLGQVAILLFK 87
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 146 LKAENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTV 205
+ ++ A+IK M ++MQ+ AV+ A + LEKYNIE ++A ++K+ FD Y P W C V
Sbjct: 1 MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 206 GRNFGSYVSYD-DFYTYFYLGKVAILLLQ 233
GRNFGSYV+++ + YFYLG+VAILL +
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 89
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 95.1 bits (235), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNF 209
++ A+IK M +D+Q+ A++ A + LEKYNIE+++A +K+ FD + P W C VGRNF
Sbjct: 3 DRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNF 62
Query: 210 GSYVSYDD-FYTYFYLGKVAILLLQ 233
GSYV+++ + YFY+G+VA+LL +
Sbjct: 63 GSYVTHETHHFIYFYIGQVAVLLFK 87
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 63/87 (72%), Gaps = 3/87 (3%)
Query: 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGR-- 207
++ A+IK M +DMQ+ AV+ A + +EKYNIE+++A ++K+ FD Y P W C VGR
Sbjct: 3 DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSG 62
Query: 208 NFGSYVSYD-DFYTYFYLGKVAILLLQ 233
NFGSYV+++ + YFYLG+VAILL +
Sbjct: 63 NFGSYVTHETKHFIYFYLGQVAILLFK 89
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 153 ALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSY 212
+++K M ++MQ A++ A + L+KYN+E+++A H+K+ FD Y P W C VGRNFGSY
Sbjct: 19 SVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSY 78
Query: 213 VSYD-DFYTYFYLGKVAILLLQ 233
V+++ + YFY+G+VAILL +
Sbjct: 79 VTHETKNFIYFYIGQVAILLFK 100
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 146 LKAENK-VALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCT 204
+ ENK ++K + + ++E + +K+ L+KY +ER++AG VK+ D YG W
Sbjct: 6 MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65
Query: 205 VGRNFGSYVSYDD-FYTYFYLGKVAILLLQ 233
VG+NFGSYV+++ + YFY+G +A L+ +
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,210,381
Number of Sequences: 62578
Number of extensions: 548156
Number of successful extensions: 1267
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 25
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)