Query psy8080
Match_columns 415
No_of_seqs 378 out of 1994
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:54:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 7.4E-48 1.6E-52 371.7 14.3 166 239-404 90-265 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1.9E-44 4.2E-49 348.3 10.6 166 239-405 70-250 (250)
3 PTZ00251 fatty acid elongase; 100.0 3.8E-42 8.2E-47 334.9 10.0 162 239-405 94-270 (272)
4 KOG3072|consensus 100.0 9E-35 2E-39 278.7 9.8 157 239-401 103-269 (282)
5 KOG3430|consensus 100.0 3E-31 6.6E-36 212.1 10.4 86 149-234 2-89 (90)
6 PTZ00059 dynein light chain; P 100.0 1.2E-29 2.6E-34 208.5 10.5 86 149-234 3-89 (90)
7 PLN03058 dynein light chain ty 100.0 2.2E-29 4.8E-34 217.7 9.5 93 143-235 26-122 (128)
8 PF01221 Dynein_light: Dynein 100.0 2.3E-28 4.9E-33 200.6 9.4 87 148-234 1-88 (89)
9 PF01151 ELO: GNS1/SUR4 family 99.9 1.7E-23 3.7E-28 202.4 8.0 105 2-137 142-249 (250)
10 KOG3071|consensus 99.9 3.7E-23 7.9E-28 200.3 6.7 103 2-139 163-267 (274)
11 PTZ00251 fatty acid elongase; 99.9 2.8E-22 6.1E-27 195.6 8.6 101 8-137 168-269 (272)
12 KOG3072|consensus 99.8 1.6E-20 3.5E-25 180.6 7.3 101 2-134 169-269 (282)
13 PF04155 Ground-like: Ground-l 93.8 0.48 1E-05 37.5 8.4 54 180-233 22-76 (76)
14 PF04689 S1FA: DNA binding pro 35.9 21 0.00046 27.6 1.3 43 369-411 9-51 (69)
15 PF12006 DUF3500: Protein of u 29.2 1E+02 0.0022 31.1 5.4 47 151-197 212-261 (313)
16 PF12652 CotJB: CotJB protein; 27.6 46 0.001 26.7 2.1 25 175-199 31-55 (78)
17 PF08776 VASP_tetra: VASP tetr 25.5 1.1E+02 0.0023 21.5 3.2 33 162-196 6-38 (40)
18 PF15650 Tox-REase-9: Restrict 25.2 49 0.0011 27.2 1.8 17 189-205 70-86 (89)
19 PF08006 DUF1700: Protein of u 20.6 1.4E+02 0.0029 27.3 4.1 36 158-193 15-64 (181)
20 PF06457 Ectatomin: Ectatomin; 20.0 1.7E+02 0.0037 19.4 3.2 14 182-195 21-34 (34)
No 1
>KOG3071|consensus
Probab=100.00 E-value=7.4e-48 Score=371.69 Aligned_cols=166 Identities=36% Similarity=0.720 Sum_probs=157.2
Q ss_pred CcceeeccccCCCCccccchhhHHHHHHHhhhhhhccC-------CCCceeEEEEeccchhhhhhhhhcccccCccceec
Q psy8080 239 PIRFTCMEVDYSDTPLGRSRAGAVWLFFFSRVLDLVDT-------KDSQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVFF 311 (415)
Q Consensus 239 ~y~~~C~~~~~~~~~~~~~~~~~~~~f~lsK~~EllDT-------K~~qvsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~ 311 (415)
+|++.|++.+++++|.++|+++++|+||+||++||+|| |+|||||||||||++|++.+|.++++.+||+.++.
T Consensus 90 ~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~ 169 (274)
T KOG3071|consen 90 AYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFA 169 (274)
T ss_pred ccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeee
Confidence 79999999999999999999999999999999999999 55999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHhHhhcCCccc-cchhhhhhhhhhHHHHHHHHHhhhhh-ccCCCCCCcHH-HHHHHHHHHHHHHHH
Q psy8080 312 GTINCFIHVVMYSYYSLTLYNPEYK-NVWWKKYLTQIQMMQFVAVGLHAILA-LLTPNCNYPKS-LIIIALPQDIFMFVL 388 (415)
Q Consensus 312 ~~~N~~VHviMY~YY~l~a~g~~~~-~~~~k~~iT~~QivQF~~~~~~~~~~-~~~~~C~~~~~-~~~~~~~~~~~~l~L 388 (415)
+.+|++||++||+||+++|+||+++ ++|||+++|.+|++||++..+|..+. +++++|..|++ +++.+.++.++|+.|
T Consensus 170 ~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~L 249 (274)
T KOG3071|consen 170 ILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLL 249 (274)
T ss_pred eehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999998 66679999998 778878899999999
Q ss_pred HHHHHHhhcCCCCCCC
Q psy8080 389 FADFYRKTYMKPATSG 404 (415)
Q Consensus 389 F~~Fy~~~Y~~~~~~~ 404 (415)
|+|||+|+|.|+++++
T Consensus 250 F~nFY~~tY~k~~~~~ 265 (274)
T KOG3071|consen 250 FSNFYIKTYKKPKKKK 265 (274)
T ss_pred HHHHHHHHhccccccc
Confidence 9999999998866644
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.9e-44 Score=348.35 Aligned_cols=166 Identities=37% Similarity=0.730 Sum_probs=148.0
Q ss_pred Ccceeecccc-CCCCccccchhhHHHHHHHhhhhhhccC-----CCCceeEEEEeccchhhhhhhhhcccccCccceecc
Q psy8080 239 PIRFTCMEVD-YSDTPLGRSRAGAVWLFFFSRVLDLVDT-----KDSQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVFFG 312 (415)
Q Consensus 239 ~y~~~C~~~~-~~~~~~~~~~~~~~~~f~lsK~~EllDT-----K~~qvsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~~ 312 (415)
.++..|++.+ ..+++...++++|.|+|++||++|++|| |+||+||||||||++|++.+|..+++.++|+.++.+
T Consensus 70 ~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~ 149 (250)
T PF01151_consen 70 LYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKKQLSFLHVYHHASTLLYCWISYKYGPGGQIWFIA 149 (250)
T ss_pred cccccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHhhhhhhhhhhhheeeeccccchhHHH
Confidence 6788996543 2344455678999999999999999999 888999999999999999999999999888999999
Q ss_pred chhhhHHHHHHHHHhHhhcCCc-cccchhhhhhhhhhHHHHHHHHHhhhhhccC-----CCC---CCcHHHHHHHHHHHH
Q psy8080 313 TINCFIHVVMYSYYSLTLYNPE-YKNVWWKKYLTQIQMMQFVAVGLHAILALLT-----PNC---NYPKSLIIIALPQDI 383 (415)
Q Consensus 313 ~~N~~VHviMY~YY~l~a~g~~-~~~~~~k~~iT~~QivQF~~~~~~~~~~~~~-----~~C---~~~~~~~~~~~~~~~ 383 (415)
++|++||++||+||+++|+|.| . ++||||+||.+||+||++++++..+..+. ++| ++|.....+..++++
T Consensus 150 ~~N~~VH~iMY~YY~l~a~g~~~~-~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 228 (250)
T PF01151_consen 150 ALNSFVHVIMYSYYFLSALGIRKV-PRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYV 228 (250)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc-hhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999999976 3 47999999999999999999999888762 489 677899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC
Q psy8080 384 FMFVLFADFYRKTYMKPATSGK 405 (415)
Q Consensus 384 ~~l~LF~~Fy~~~Y~~~~~~~~ 405 (415)
++++||.|||+|+|.+|+++||
T Consensus 229 s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 229 SYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred HHHHHHHHHHHHHhCcCCCCCC
Confidence 9999999999999988887654
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=3.8e-42 Score=334.89 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=135.7
Q ss_pred CcceeeccccCCCCc-cccchhhHHHHHHHhhhhhhccC-----CCCceeEEEEeccchhhhhhhhhcccccCcccee-c
Q psy8080 239 PIRFTCMEVDYSDTP-LGRSRAGAVWLFFFSRVLDLVDT-----KDSQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVF-F 311 (415)
Q Consensus 239 ~y~~~C~~~~~~~~~-~~~~~~~~~~~f~lsK~~EllDT-----K~~qvsFLHvyHH~~~~~~~w~~~~~~~~~~~~~-~ 311 (415)
.++..|++. ++| ...++++|+|+|++||++||+|| |||||||||||||++|++.+|..+. +|++..+ +
T Consensus 94 ~~~~~C~~~---~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKKqvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~ 168 (272)
T PTZ00251 94 LHDTLCTFR---EDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGKKLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICA 168 (272)
T ss_pred cceeeecCC---CCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCchHHHHHHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 577788642 233 24578999999999999999999 8889999999999999999999763 4444443 5
Q ss_pred cchhhhHHHHHHHHHhHhhcCCccccchhhhhhhhhhHHHHHHHHHhhhhhcc-------CCCCCCcH-HHHHHHHHHHH
Q psy8080 312 GTINCFIHVVMYSYYSLTLYNPEYKNVWWKKYLTQIQMMQFVAVGLHAILALL-------TPNCNYPK-SLIIIALPQDI 383 (415)
Q Consensus 312 ~~~N~~VHviMY~YY~l~a~g~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~-------~~~C~~~~-~~~~~~~~~~~ 383 (415)
+.+|++||++||+||+++|+||+.+..||||+||.+||+||++++++..+.+. ..+|+++. .....+.++++
T Consensus 169 ~~lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 248 (272)
T PTZ00251 169 AAMNYFVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYI 248 (272)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHH
Confidence 89999999999999999999997323469999999999999999999887753 24799887 67777788999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC
Q psy8080 384 FMFVLFADFYRKTYMKPATSGK 405 (415)
Q Consensus 384 ~~l~LF~~Fy~~~Y~~~~~~~~ 405 (415)
+|++||+|||+|+|++++|+++
T Consensus 249 s~l~LF~~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 249 FNFYLFSEMFVKGYVLPRKAKA 270 (272)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999988766543
No 4
>KOG3072|consensus
Probab=100.00 E-value=9e-35 Score=278.66 Aligned_cols=157 Identities=27% Similarity=0.403 Sum_probs=136.4
Q ss_pred CcceeeccccCCCCccccchhhHHHHHHHhhhhhhccC-----CCCceeEEEEeccchhhhhhhhhcccccCccceeccc
Q psy8080 239 PIRFTCMEVDYSDTPLGRSRAGAVWLFFFSRVLDLVDT-----KDSQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVFFGT 313 (415)
Q Consensus 239 ~y~~~C~~~~~~~~~~~~~~~~~~~~f~lsK~~EllDT-----K~~qvsFLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~ 313 (415)
-+...|++.++..++ .++|+|+|.+||..||+|| |+||++|||||||++++++.|.++.-. .+.+.+++.
T Consensus 103 f~~s~C~~~~~~~~~----~~fW~~~fvlSK~~ElgDT~FiVLRKrPliFlHWYHHi~~~iy~~~~y~~~-~a~~rw~i~ 177 (282)
T KOG3072|consen 103 FKGSYCDANNLGLSV----SGFWSWLFVLSKAPELGDTIFIVLRKRPLIFLHWYHHILVLIYAWHSYIEK-VAWGRWFIW 177 (282)
T ss_pred hheeeeecccCCcch----HHHHHHHHHHHhhhhhhceeEEEeccCccEEEechhhheeeeeeeeecccC-CcCceEEEE
Confidence 345689887654443 3899999999999999999 999999999999999999999998744 345678999
Q ss_pred hhhhHHHHHHHHHhHhhcCCccccchhhhhhhhhhHHHHHHHHHhhhhhcc---CC--CCCCcHHHHHHHHHHHHHHHHH
Q psy8080 314 INCFIHVVMYSYYSLTLYNPEYKNVWWKKYLTQIQMMQFVAVGLHAILALL---TP--NCNYPKSLIIIALPQDIFMFVL 388 (415)
Q Consensus 314 ~N~~VHviMY~YY~l~a~g~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~---~~--~C~~~~~~~~~~~~~~~~~l~L 388 (415)
+|.+||++||+||+++|+|.|+| .+..+.||.+||+||++++........ .. +|+.+.....++.+++++|++|
T Consensus 178 mNy~vHa~MY~YY~lrsl~ir~P-k~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvL 256 (282)
T KOG3072|consen 178 MNYLVHAFMYSYYALRSLGIRLP-KSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVL 256 (282)
T ss_pred EehhHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHH
Confidence 99999999999999999999995 889999999999999998876544432 12 3999999999999999999999
Q ss_pred HHHHHHhhcCCCC
Q psy8080 389 FADFYRKTYMKPA 401 (415)
Q Consensus 389 F~~Fy~~~Y~~~~ 401 (415)
|+|||.++|+++.
T Consensus 257 f~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 257 FANFFYQAYIKKG 269 (282)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999999974
No 5
>KOG3430|consensus
Probab=99.97 E-value=3e-31 Score=212.06 Aligned_cols=86 Identities=48% Similarity=0.964 Sum_probs=82.9
Q ss_pred hhhccccccCCCcHHHHHHHHHHHHHhhhhcC-chHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCc
Q psy8080 149 ENKVALIKETTMEKDMQETAVNAAKEGLEKYN-IEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGK 226 (415)
Q Consensus 149 e~~~~~I~~~dM~~emq~~~~~~a~~al~~~~-~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~ 226 (415)
.+.++.|+.+|||++||++++++|.+|+++++ ++++||..||++||++||++||||||++|||+|||| ++||||++|.
T Consensus 2 ~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~ 81 (90)
T KOG3430|consen 2 LERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGV 81 (90)
T ss_pred CCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEece
Confidence 35678999999999999999999999999999 789999999999999999999999999999999999 9999999999
Q ss_pred EEEEEEEe
Q psy8080 227 VAILLLQW 234 (415)
Q Consensus 227 ~~~l~~k~ 234 (415)
+++|+||.
T Consensus 82 l~illfK~ 89 (90)
T KOG3430|consen 82 LAILLFKC 89 (90)
T ss_pred EEEEEEec
Confidence 99999985
No 6
>PTZ00059 dynein light chain; Provisional
Probab=99.96 E-value=1.2e-29 Score=208.50 Aligned_cols=86 Identities=48% Similarity=0.971 Sum_probs=82.6
Q ss_pred hhhccccccCCCcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCcE
Q psy8080 149 ENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGKV 227 (415)
Q Consensus 149 e~~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~~ 227 (415)
+++++.|+.+|||+|||++|++++.+|+++++.++|+|++||++||++|||+||||||++|||++||| +++|||++|++
T Consensus 3 ~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~ 82 (90)
T PTZ00059 3 SDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQV 82 (90)
T ss_pred CCCccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEEEEEe
Q psy8080 228 AILLLQW 234 (415)
Q Consensus 228 ~~l~~k~ 234 (415)
++|+||.
T Consensus 83 ~vLlfK~ 89 (90)
T PTZ00059 83 AILLFKS 89 (90)
T ss_pred EEEEEec
Confidence 9999995
No 7
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=217.71 Aligned_cols=93 Identities=31% Similarity=0.547 Sum_probs=86.3
Q ss_pred cchhhhhhhccccccCCCcHHHHHHHHHHHHHhhhhcC---chHHHHHHHHHhhhhccCCccEEEEccccceeEEee-Cc
Q psy8080 143 ENYLKAENKVALIKETTMEKDMQETAVNAAKEGLEKYN---IEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DF 218 (415)
Q Consensus 143 e~~~k~e~~~~~I~~~dM~~emq~~~~~~a~~al~~~~---~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~ 218 (415)
++....++.+++|+.+|||++||++|+++|.+|+++++ +++|||++||++||++|||+||||||++|||++||| ++
T Consensus 26 ~~~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~ 105 (128)
T PLN03058 26 EQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGG 105 (128)
T ss_pred hHHhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCc
Confidence 34445567899999999999999999999999999874 579999999999999999999999999999999999 99
Q ss_pred EEEEEeCcEEEEEEEec
Q psy8080 219 YTYFYLGKVAILLLQWF 235 (415)
Q Consensus 219 ~i~F~~~~~~~l~~k~~ 235 (415)
+|||++|+++||+||+-
T Consensus 106 fIyF~ig~~aiLLfKt~ 122 (128)
T PLN03058 106 FLYFSIDKVYILLFKTA 122 (128)
T ss_pred EEEEEECCEEEEEEecc
Confidence 99999999999999984
No 8
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=99.95 E-value=2.3e-28 Score=200.64 Aligned_cols=87 Identities=40% Similarity=0.783 Sum_probs=82.5
Q ss_pred hhhhccccccCCCcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCc
Q psy8080 148 AENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGK 226 (415)
Q Consensus 148 ~e~~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~ 226 (415)
|++.+++|+.+|||+|||++|++.|.+|++++++++|+|+.||++||++|||+||||||++||+++||| +++++|++|+
T Consensus 1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~ 80 (89)
T PF01221_consen 1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGN 80 (89)
T ss_dssp SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETT
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECC
Confidence 457889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEEEEEe
Q psy8080 227 VAILLLQW 234 (415)
Q Consensus 227 ~~~l~~k~ 234 (415)
+++|+||+
T Consensus 81 ~~~li~kt 88 (89)
T PF01221_consen 81 IAFLIFKT 88 (89)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999996
No 9
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.89 E-value=1.7e-23 Score=202.40 Aligned_cols=105 Identities=38% Similarity=0.723 Sum_probs=85.7
Q ss_pred CCcceehhhhhhhHHHHHhHHHHHhccCCCCccchhHHHHHhHHHHHHhhhccccccchhhhhHHhhhhccccccccccc
Q psy8080 2 RGQVAFFGTVNSFVHGVMYGYYLVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYL 81 (415)
Q Consensus 2 ~g~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~~k~~IT~lQi~Qf~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
+|+..+.+++|++||++||+||+++|+|.+ +.|+||||+||.+||+||++|++.+.++ .+.
T Consensus 142 ~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~QF~~~~~~~~~~------------------~~~ 202 (250)
T PF01151_consen 142 GGQIWFIAALNSFVHVIMYSYYFLSALGIR-KVPRWWKKYITSLQIVQFVIGIVHTVYA------------------LYY 202 (250)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccc-cchhHHHHHHhHHhhhhhHHHHHHHHHH------------------hhe
Confidence 577788889999999999999999999972 3779999999999999999999654322 000
Q ss_pred eeeeEEeeeeeeecccCCCC---CCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy8080 82 KFQFIICGIHCTIQLCSSNC---KYPQFMLYFGLSQDIFMFFLFFDFYKKTYWSKGGAP 137 (415)
Q Consensus 82 ~~q~~~~~~h~~~~~~~~~C---~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~k~~~~ 137 (415)
. . ....+| ++|..+..++.++++++++||.|||+|+|++|++||
T Consensus 203 ~---------~---~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k 249 (250)
T PF01151_consen 203 Y---------F---FPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKKKKKK 249 (250)
T ss_pred e---------c---cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 0 0 012589 667899999999999999999999999998877665
No 10
>KOG3071|consensus
Probab=99.88 E-value=3.7e-23 Score=200.30 Aligned_cols=103 Identities=40% Similarity=0.681 Sum_probs=87.0
Q ss_pred CCcceehhhhhhhHHHHHhHHHHHhccCCCCccchhHHHHHhHHHHHHhhhccccccchhhhhHHhhhhccccccccccc
Q psy8080 2 RGQVAFFGTVNSFVHGVMYGYYLVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYL 81 (415)
Q Consensus 2 ~g~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~~k~~IT~lQi~Qf~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
+|++.+.+.+|++||++||+||+++|+||+.++.+|||+++|.+|++||++-.+
T Consensus 163 ~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~-------------------------- 216 (274)
T KOG3071|consen 163 GGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFV-------------------------- 216 (274)
T ss_pred CceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHH--------------------------
Confidence 489999999999999999999999999999999999999999999999986321
Q ss_pred eeeeEEeeeeeeec-ccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy8080 82 KFQFIICGIHCTIQ-LCSSNCKYPQF-MLYFGLSQDIFMFFLFFDFYKKTYWSKGGAPPP 139 (415)
Q Consensus 82 ~~q~~~~~~h~~~~-~~~~~C~~~~~-~~~~~~~~~~s~l~LF~~Fy~~~Y~~k~~~~~~ 139 (415)
|..+. ...++|..|.+ +.+.+.+..++|++||.|||+|+|+++++++.+
T Consensus 217 ---------~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~ 267 (274)
T KOG3071|consen 217 ---------HTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAK 267 (274)
T ss_pred ---------HHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 11111 23468989988 777779999999999999999999887666543
No 11
>PTZ00251 fatty acid elongase; Provisional
Probab=99.86 E-value=2.8e-22 Score=195.64 Aligned_cols=101 Identities=26% Similarity=0.289 Sum_probs=78.1
Q ss_pred hhhhhhhHHHHHhHHHHHhccCCCCccchhHHHHHhHHHHHHhhhccccccchhhhhHHhhhhccccccccccceeeeEE
Q psy8080 8 FGTVNSFVHGVMYGYYLVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYLKFQFII 87 (415)
Q Consensus 8 ~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~~k~~IT~lQi~Qf~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 87 (415)
++++|++||++||+||+++|+|++ +..+||||+||.+||+||++|++.+.+. .+.. . .
T Consensus 168 ~~~lNs~VH~iMY~YY~lsa~g~~-~~~~~~kk~IT~lQi~Qfv~~~~~~~~~------------------~~~~--~-~ 225 (272)
T PTZ00251 168 AAAMNYFVHSIMYFYFALSEAGFK-KLVKPFAMYITLLQITQMVGGLFVSGYV------------------IVQK--L-T 225 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhh--c-c
Confidence 599999999999999999999984 2345699999999999999998654221 0000 0 0
Q ss_pred eeeeeeecccCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy8080 88 CGIHCTIQLCSSNCKYPQ-FMLYFGLSQDIFMFFLFFDFYKKTYWSKGGAP 137 (415)
Q Consensus 88 ~~~h~~~~~~~~~C~~~~-~~~~~~~~~~~s~l~LF~~Fy~~~Y~~k~~~~ 137 (415)
+ ....+|+++. .....+.+++++|++||.|||+++|++|++++
T Consensus 226 ~-------~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~ 269 (272)
T PTZ00251 226 K-------GDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAK 269 (272)
T ss_pred c-------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 0 1135799888 66777788999999999999999998775554
No 12
>KOG3072|consensus
Probab=99.82 E-value=1.6e-20 Score=180.61 Aligned_cols=101 Identities=27% Similarity=0.353 Sum_probs=85.7
Q ss_pred CCcceehhhhhhhHHHHHhHHHHHhccCCCCccchhHHHHHhHHHHHHhhhccccccchhhhhHHhhhhccccccccccc
Q psy8080 2 RGQVAFFGTVNSFVHGVMYGYYLVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYL 81 (415)
Q Consensus 2 ~g~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~~k~~IT~lQi~Qf~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
.+.++|++.||.+||++||+||+++|+|+ |.|++..+.||.+||+||++|+... ..+.|+
T Consensus 169 ~a~~rw~i~mNy~vHa~MY~YY~lrsl~i--r~Pk~vam~iTtlQi~Qm~i~~~i~------------------~~v~~~ 228 (282)
T KOG3072|consen 169 VAWGRWFIWMNYLVHAFMYSYYALRSLGI--RLPKSVAMAITTLQIVQMVIGCYIG------------------THVYYV 228 (282)
T ss_pred CcCceEEEEEehhHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHHHHHHHHhee------------------eEEEEE
Confidence 47889999999999999999999999999 8899999999999999999999653 222232
Q ss_pred eeeeEEeeeeeeecccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy8080 82 KFQFIICGIHCTIQLCSSNCKYPQFMLYFGLSQDIFMFFLFFDFYKKTYWSKG 134 (415)
Q Consensus 82 ~~q~~~~~~h~~~~~~~~~C~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~k~ 134 (415)
. |. .+.+|..+..+..++.+++++|++||+|||.++|++|+
T Consensus 229 ~--------~~----~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 229 K--------HT----HQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKKG 269 (282)
T ss_pred E--------ec----CCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2 11 11239888899999999999999999999999999884
No 13
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=93.85 E-value=0.48 Score=37.50 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCcEEEEEEE
Q psy8080 180 NIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGKVAILLLQ 233 (415)
Q Consensus 180 ~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~~~~l~~k 233 (415)
.+..+.++.|.+..++++|+.+.||++++-=++.+|- ..+.-...+++.+++|+
T Consensus 22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTDDLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecccceeeeeeCCEEEEEEC
Confidence 5567789999999999999999999998666666666 58888899999998874
No 14
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.95 E-value=21 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.369 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcc
Q psy8080 369 NYPKSLIIIALPQDIFMFVLFADFYRKTYMKPATSGKASQPIK 411 (415)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~LF~~Fy~~~Y~~~~~~~~~~~~~~ 411 (415)
+.++..+.+..+-.+....|-+||-.=.|-+|.-+.+|++|+.
T Consensus 9 GlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk~lpp~kkkpvs 51 (69)
T PF04689_consen 9 GLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQKTLPPKKKKPVS 51 (69)
T ss_pred CCCCCeEEeehHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc
Confidence 3444544444444566666778888888876655556666663
No 15
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=29.17 E-value=1e+02 Score=31.11 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=34.3
Q ss_pred hccccccCCCcHHHHHHHHHHHHHhhhhcCch--HHHHHHH-HHhhhhcc
Q psy8080 151 KVALIKETTMEKDMQETAVNAAKEGLEKYNIE--REVAGHV-KQHFDNTY 197 (415)
Q Consensus 151 ~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~--k~iA~~I-K~~~Dkky 197 (415)
...-|..+||+++.|+.+.+.+.+-+...+.+ ++.-+.| +..+|+.|
T Consensus 212 ~~~Gl~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~t~ 261 (313)
T PF12006_consen 212 PPEGLAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDETY 261 (313)
T ss_pred CCCCcChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccceE
Confidence 34568889999999999999999988877664 2223344 66666654
No 16
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=27.65 E-value=46 Score=26.71 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=16.8
Q ss_pred hhhhcCchHHHHHHHHHhhhhccCC
Q psy8080 175 GLEKYNIEREVAGHVKQHFDNTYGP 199 (415)
Q Consensus 175 al~~~~~~k~iA~~IK~~~Dkkyg~ 199 (415)
|++.|+.-.+.-+.+|+++.++|||
T Consensus 31 Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 31 ALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3343433344556789999999998
No 17
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=25.54 E-value=1.1e+02 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhc
Q psy8080 162 KDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNT 196 (415)
Q Consensus 162 ~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkk 196 (415)
+.++++++++.++-+++-+ +||-+.|+++|.+.
T Consensus 6 e~~KqEIL~EvrkEl~K~K--~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK--EEIIEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcc
Confidence 3577888888888887554 35778888888653
No 18
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=25.15 E-value=49 Score=27.19 Aligned_cols=17 Identities=29% Similarity=0.700 Sum_probs=15.4
Q ss_pred HHHhhhhccCCccEEEE
Q psy8080 189 VKQHFDNTYGPYWQCTV 205 (415)
Q Consensus 189 IK~~~Dkkyg~~WhcIV 205 (415)
=|+++.+.+|.+|-+||
T Consensus 70 Y~~el~~~~G~~W~~~l 86 (89)
T PF15650_consen 70 YKQELEKIYGGGWKTRL 86 (89)
T ss_pred HHHHhcCccCCCeeEEe
Confidence 37899999999999998
No 19
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.59 E-value=1.4e+02 Score=27.27 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHHhhhhc--------------CchHHHHHHHHHhh
Q psy8080 158 TTMEKDMQETAVNAAKEGLEKY--------------NIEREVAGHVKQHF 193 (415)
Q Consensus 158 ~dM~~emq~~~~~~a~~al~~~--------------~~~k~iA~~IK~~~ 193 (415)
.+||+++++|+++...|-+++- .+.+|+|+.++.+.
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 4799999999999777766542 12356777777654
No 20
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=20.01 E-value=1.7e+02 Score=19.40 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhhhh
Q psy8080 182 EREVAGHVKQHFDN 195 (415)
Q Consensus 182 ~k~iA~~IK~~~Dk 195 (415)
+.+||.+||++.|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T PF06457_consen 21 SGSIATMIKRKCDK 34 (34)
T ss_dssp SCCHHHHHHHHCH-
T ss_pred cccHHHHHHHHhCC
Confidence 44699999999885
Done!