Query psy8080
Match_columns 415
No_of_seqs 378 out of 1994
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:55:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 6.5E-32 2.2E-36 220.3 8.7 87 148-234 1-88 (89)
2 4ds1_A Dynein light chain 1, c 100.0 1.1E-30 3.6E-35 216.2 8.7 85 150-234 11-96 (97)
3 1yo3_A Dynein light chain 1; s 100.0 2.5E-30 8.7E-35 215.6 10.2 85 150-234 16-101 (102)
4 1use_A VAsp, vasodilator-stimu 34.0 42 0.0014 23.2 3.4 34 162-197 10-43 (45)
5 1eci_A Ectatomin; pore-forming 31.4 87 0.003 20.1 4.4 33 161-195 4-36 (37)
6 3arc_L Photosystem II reaction 20.9 1.8E+02 0.0063 18.9 4.5 28 367-394 9-36 (37)
7 1eci_B Ectatomin; pore-forming 19.6 33 0.0011 21.7 0.7 14 182-195 21-34 (34)
8 3e9v_A Protein BTG2; B-cell tr 15.7 1.8E+02 0.006 24.1 4.6 44 159-202 1-48 (120)
9 3ajm_A Programmed cell death p 13.1 1.7E+02 0.0058 26.7 4.0 13 183-195 125-137 (213)
10 1wyo_A Protein EB3, microtubul 12.3 2.1E+02 0.0072 24.8 4.3 42 157-199 71-128 (159)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=99.97 E-value=6.5e-32 Score=220.30 Aligned_cols=87 Identities=45% Similarity=0.923 Sum_probs=83.1
Q ss_pred hhhhccccccCCCcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCc
Q psy8080 148 AENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGK 226 (415)
Q Consensus 148 ~e~~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~ 226 (415)
|++.+++|+.+|||+|||++|+++|.+|+++++.++|+|++||++||++|||+||||||++|||++||| +++|||++|+
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~ 80 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ 80 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence 345678999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEEEEEe
Q psy8080 227 VAILLLQW 234 (415)
Q Consensus 227 ~~~l~~k~ 234 (415)
+++|+||+
T Consensus 81 ~~iLlfKt 88 (89)
T 3rjs_A 81 VAVLLFKS 88 (89)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999997
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-30 Score=216.21 Aligned_cols=85 Identities=35% Similarity=0.818 Sum_probs=82.5
Q ss_pred hhccccccCCCcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCcEE
Q psy8080 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGKVA 228 (415)
Q Consensus 150 ~~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~~~ 228 (415)
..+++|+.+|||+|||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||| +++|||++|+++
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~a 90 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLA 90 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEE
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEe
Q psy8080 229 ILLLQW 234 (415)
Q Consensus 229 ~l~~k~ 234 (415)
+|+||+
T Consensus 91 iLlfKt 96 (97)
T 4ds1_A 91 FLVFKT 96 (97)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=99.96 E-value=2.5e-30 Score=215.61 Aligned_cols=85 Identities=45% Similarity=0.944 Sum_probs=81.7
Q ss_pred hhccccccCCCcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhccCCccEEEEccccceeEEee-CcEEEEEeCcEE
Q psy8080 150 NKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSYVSYD-DFYTYFYLGKVA 228 (415)
Q Consensus 150 ~~~~~I~~~dM~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkkyg~~WhcIVG~~fgs~vthe-~~~i~F~~~~~~ 228 (415)
..+++|+.+|||+|||++|+++|.+|++++++++|+|++||++||++|||+||||||++|||++||| +++|||++|+++
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~a 95 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVA 95 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEE
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEE
Confidence 4778999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEe
Q psy8080 229 ILLLQW 234 (415)
Q Consensus 229 ~l~~k~ 234 (415)
||+||+
T Consensus 96 iLlfKt 101 (102)
T 1yo3_A 96 ILLFKS 101 (102)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999996
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.98 E-value=42 Score=23.16 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhhcc
Q psy8080 162 KDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTY 197 (415)
Q Consensus 162 ~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dkky 197 (415)
+.++++++++.++-+++-+ +||-+.|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 4567888888888877553 458999999998875
No 5
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=31.43 E-value=87 Score=20.06 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHhhhhcCchHHHHHHHHHhhhh
Q psy8080 161 EKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDN 195 (415)
Q Consensus 161 ~~emq~~~~~~a~~al~~~~~~k~iA~~IK~~~Dk 195 (415)
|...-+.++-....-.++. +.+||.+||++.|+
T Consensus 4 pkkiweticpt~~~~akkc--~g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKC--SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTB--CHHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHc--cchHHHHHHHHhcc
Confidence 3344444444444433333 56799999999986
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.90 E-value=1.8e+02 Score=18.93 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy8080 367 NCNYPKSLIIIALPQDIFMFVLFADFYR 394 (415)
Q Consensus 367 ~C~~~~~~~~~~~~~~~~~l~LF~~Fy~ 394 (415)
+-+.++..+++++.......+||+++|.
T Consensus 9 ~VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 9 PVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 4566788888998888899999999875
No 7
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=19.56 E-value=33 Score=21.73 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhhhh
Q psy8080 182 EREVAGHVKQHFDN 195 (415)
Q Consensus 182 ~k~iA~~IK~~~Dk 195 (415)
+.+||.+||++.|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 45699999999875
No 8
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=15.66 E-value=1.8e+02 Score=24.09 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHHHHhhhh--cCch--HHHHHHHHHhhhhccCCccE
Q psy8080 159 TMEKDMQETAVNAAKEGLEK--YNIE--REVAGHVKQHFDNTYGPYWQ 202 (415)
Q Consensus 159 dM~~emq~~~~~~a~~al~~--~~~~--k~iA~~IK~~~Dkkyg~~Wh 202 (415)
||-.|.+..+-=.+.-+..+ .+.+ +..|+.|.+.|-++|.+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56666555443344333333 2222 34688899999999999998
No 9
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=13.05 E-value=1.7e+02 Score=26.67 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhh
Q psy8080 183 REVAGHVKQHFDN 195 (415)
Q Consensus 183 k~iA~~IK~~~Dk 195 (415)
||||+.||+-||.
T Consensus 125 KeIAsaIKklLDA 137 (213)
T 3ajm_A 125 KDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999996
No 10
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.26 E-value=2.1e+02 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=26.9
Q ss_pred cCCCcHHHHHHHHHHHHHhhhhcCc----------------hHHHHHHHHHhhhhccCC
Q psy8080 157 ETTMEKDMQETAVNAAKEGLEKYNI----------------EREVAGHVKQHFDNTYGP 199 (415)
Q Consensus 157 ~~dM~~emq~~~~~~a~~al~~~~~----------------~k~iA~~IK~~~Dkkyg~ 199 (415)
.+.++-|+.+++ +...+++++++. +-|.++.+|+.+|+.|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 455555555554 344445544432 347899999999999965
Done!