RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8080
(415 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 167 bits (426), Expect = 2e-49
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 241 RFTCMEVDYSDTPLGRSRAGAVWLF--FFSRVLDLVDT-------KDSQVTFLHVYHHTA 291
+ + V YS P + + F S+ L+L+DT K Q++FLHVYHH
Sbjct: 67 LYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHAT 126
Query: 292 VVMFAWLAVKFVPGGHGVFFGTINCFIHVVMYSYYSLTLYNPEYKNVWWKKYLTQIQMMQ 351
+++++WL +K+ PGGH F +N F+HV+MY YY L VWWKKY+TQ+Q++Q
Sbjct: 127 MLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGARGLPVWWKKYITQLQIIQ 186
Query: 352 FVAVGLHAILALLT---PNCNYPKSL-IIIALPQDIFMFVLFADFYRKTYMKPATSGK 405
FV H AL C P + + L + LF +FY K+Y KP K
Sbjct: 187 FVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKKKK 244
Score = 79.2 bits (196), Expect = 7e-17
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 3 GQVAFFGTVNSFVHGVMYGYYLVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQM 62
G F +NSFVH +MY YY ++A + +WWKKYITQLQ++
Sbjct: 141 GHFWFIALLNSFVHVIMYFYYFLAALGARGLP-VWWKKYITQLQII-------------- 185
Query: 63 ELVVEEVHHSATTGLETYLKFQFIICGIHC---TIQLCSSNCKYP-QFMLYFGLSQDIFM 118
QF++ H C P + GL +
Sbjct: 186 ---------------------QFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSY 224
Query: 119 FFLFFDFYKKTY 130
FLF +FY K+Y
Sbjct: 225 LFLFLNFYIKSY 236
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 114 bits (289), Expect = 2e-31
Identities = 39/80 (48%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 153 ALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSY 212
A++K M ++MQE A+ A E LEK+N+E+++A H+K+ FD YGP W C VG+NFGSY
Sbjct: 3 AVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSY 62
Query: 213 VSYD-DFYTYFYLGKVAILL 231
V+++ + YFY+G++A LL
Sbjct: 63 VTHETKHFIYFYIGQLAFLL 82
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 103 bits (258), Expect = 3e-27
Identities = 41/86 (47%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 149 ENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRN 208
++ A++K M +DMQ+ A++ A + LEK+NIE+++A ++K+ FD Y P W C VGRN
Sbjct: 3 SDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 62
Query: 209 FGSYVSYD-DFYTYFYLGKVAILLLQ 233
FGSYV+++ + YFYLG+VAILL +
Sbjct: 63 FGSYVTHETKHFIYFYLGQVAILLFK 88
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 53.8 bits (129), Expect = 5e-09
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 155 IKETTMEKDMQETAVNAAKEGLE----KYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFG 210
++ + M +Q A + A++ L+ K + +R +A +K+ FD+ YGP W C VG +FG
Sbjct: 38 VRASDMPLVLQNRAFSCARDILDAMPGKLDSKR-LALALKKEFDSAYGPAWHCIVGTSFG 96
Query: 211 SYVSYD-DFYTYFYLGKVAILLLQ 233
SYV++ + YF + KV ILL +
Sbjct: 97 SYVTHSTGGFLYFSIDKVYILLFK 120
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 45.2 bits (107), Expect = 3e-05
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 261 AVWLFFFSRVLDLVDT-----KDSQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVFF--GT 313
A+ LF S+V + DT ++ FL +HH + ++AW++ + G ++
Sbjct: 114 AMGLFSISKVPEFGDTFFLIMGGKKLPFLSWFHHVTIFLYAWMSYQ---QGSSIWICAAA 170
Query: 314 INCFIHVVMYSYYSLTLYNPEYKNVW--WKKYLTQIQMMQFVA---VGLHAILALLTPNC 368
+N F+H +MY Y++L+ +K + + Y+T +Q+ Q V V + I+ LT
Sbjct: 171 MNYFVHSIMYFYFALS--EAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGD 228
Query: 369 NYPKSLIIIALPQD-----IFMFVLFADFYRKTYMKPATSGKA 406
S +A + IF F LF++ + K Y+ P +
Sbjct: 229 PKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAKAG 271
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 33.6 bits (78), Expect = 0.21
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 96 LCSSNCKYPQFMLYFGLSQDIF---MFFLFFDF------YKKTYWSKGGAP-PPPPEENY 145
+ +S CKYP ++ ++ D + MFF F Y + ++++ G PE+ Y
Sbjct: 224 IVNSICKYPDYL---KMANDPYGDSMFF----FARREQMYARHFFTRAGTVGEAIPEDLY 276
Query: 146 LKAENK 151
LK +
Sbjct: 277 LKGASG 282
>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll
synthetase. This model describes a subfamily of a large
family of polyprenyltransferases (pfam01040) that also
includes 4-hydroxybenzoate octaprenyltransferase and
protoheme IX farnesyltransferase (heme O synthase).
Members of this family are found exclusively in
photosynthetic organisms, including a single copy in
Arabidopsis thaliana [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 283
Score = 30.9 bits (70), Expect = 1.2
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 266 FFSRVLDLVDTKD-----SQVTFLHVYHHTAVVMFAWLAVKFVPGGHGVFFGTINCFIHV 320
+F R +D ++ ++ V + V+ A L V V G + T+ +
Sbjct: 60 YFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLA 119
Query: 321 VMYSYYSLTLYNPEYKNVWWKKYLTQIQMMQFVAVGLHAILALLTP 366
V+YS + L +N W + + HAI A LT
Sbjct: 120 VIYSMPPIKL----KRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTW 161
>gnl|CDD|215953 pfam00500, Late_protein_L1, L1 (late) protein.
Length = 500
Score = 31.1 bits (71), Expect = 1.2
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 94 IQLCSSNCKYPQFMLYFGLSQDIFMFFLFF-----DFYKKTYWSKGGA-PPPPPEENYLK 147
+ + S CKYP Y ++ D + +FF Y + ++++ G P + Y+K
Sbjct: 220 LDIVQSICKYPD---YLKMAADPYGDSMFFYARREQMYARHFFNRAGTVGEAVPTDLYIK 276
Query: 148 AENKVALI 155
A I
Sbjct: 277 GTGPQATI 284
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 30.9 bits (70), Expect = 1.4
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 24 LVSAFDPQNKWNLWWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYLKF 83
LV + Q++W+ W K Q+++ P FG ++ E V E + + + KF
Sbjct: 403 LVPSLLTQSEWSKWSTK---AKQILKKNPNFGMDPKKKDEYVYRERPINLSE--KLSDKF 457
Query: 84 Q 84
+
Sbjct: 458 K 458
>gnl|CDD|184984 PRK15023, PRK15023, L-serine deaminase; Provisional.
Length = 454
Score = 30.8 bits (69), Expect = 1.5
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 126 YKKTYWSKGGAPPPPPEENYLKAENKVALIKETTMEKDMQETAVNAAKEGLEKYNIEREV 185
Y KTY+S GG E A N+V++ ++ N L ++ E+
Sbjct: 139 YSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAYC-NETGYSLSGLAMQNEL 197
Query: 186 AGHVKQHFDNTYGPYWQ 202
A H K+ D + WQ
Sbjct: 198 ALHSKKEIDEYFAHVWQ 214
>gnl|CDD|100026 cd02185, AroH, Chorismate mutase (AroH) is one of at least five
chorismate-utilizing enzymes present in microorganisms
that catalyze the rearrangement of chorismate to
prephenic acid, the first committed step in the
biosynthesis of aromatic amino acids. In prokaryotes,
chorismate mutase may be fused to prephenate
dehydratase, prephenate dehydrogenase, or
3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as
part of a bifunctional enzyme. The AroH domain forms a
homotrimer with three-fold symmetry.
Length = 117
Score = 29.0 bits (66), Expect = 1.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 269 RVLDLVDTKDSQVTFLHVYHHTAVV 293
RVL V+T +Q HVY A
Sbjct: 88 RVLIHVNTDKAQQEIKHVYLGGAKK 112
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 37 WWKKYITQLQLVRVLPGFGFRSSEQMELVVEEVHHSATTGL--ETYL 81
+ K Y T +++RVL +RS + E+ VE L ++Y+
Sbjct: 317 FMKLYGTTFRVLRVLQMVYYRSDRRREVFVEMCRDKDVQRLTFDSYM 363
>gnl|CDD|225730 COG3189, COG3189, Uncharacterized conserved protein [Function
unknown].
Length = 117
Score = 28.9 bits (65), Expect = 1.8
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 231 LLQWFSGDPIRFTCMEVDYSDTPLGRSRAGAVWLFFFSRVLDLVD-TKDSQVTFL----H 285
L +WF DP ++ Y L A A+ DL+D +T L
Sbjct: 51 LRKWFHHDPKKWDEFRERYRAE-LNAQDAQALE--------DLLDIASHGPLTLLYAAKD 101
Query: 286 VYHHTAVVMFAWL 298
H+ AVV+ L
Sbjct: 102 EAHNHAVVLAELL 114
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 29.7 bits (67), Expect = 2.8
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 149 ENKVALIKETTMEKDMQET----AVNAAKEGLEKYNIEREVAGHVKQH 192
K+A + +M D+ E A+ LE Y + ++ +++
Sbjct: 189 AIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESK 236
>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990). This
family of proteins are functionally uncharacterized.
Length = 158
Score = 28.4 bits (64), Expect = 4.3
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 226 KVAILLLQW--FSGDPIRFTCMEVDYSDTP-------LGRSRAGAVWLFFFSRVLDLVDT 276
+ A LL W F +R V TP L R+R G +W+ RV+ +VD
Sbjct: 35 RAAQALLSWRMFRLAGVR-----VIAPATPPEVGRTVLLRARLGGLWVLAPCRVVYVVDE 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.454
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,753,589
Number of extensions: 2121776
Number of successful extensions: 2499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 34
Length of query: 415
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 316
Effective length of database: 6,546,556
Effective search space: 2068711696
Effective search space used: 2068711696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)