RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8080
         (415 letters)



>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score = 99.0 bits (247), Expect = 3e-26
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 3/86 (3%)

Query: 153 ALIKETTMEKDMQETAVNAAKEGLEKYNIEREVAGHVKQHFDNTYGPYWQCTVGRNFGSY 212
           A+IK   M ++MQ+ AV+ A + LEKYNIE+++A ++K+ FD  Y P W C VGRNFGSY
Sbjct: 4   AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSY 63

Query: 213 VSYD-DFYTYFYLGKVAILLLQWFSG 237
           V+++   + YFYLG+VAILL  + SG
Sbjct: 64  VTHETRHFIYFYLGQVAILL--FKSG 87


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 34.7 bits (80), Expect = 0.020
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 94  IQLCSSNCKYPQFMLYFGLSQDIFMFFLFF-----DFYKKTYWSKGGAP-PPPPEENYLK 147
           + +C+S CKYP ++    +  + +   LFF       + +  +++ G      P++ Y+K
Sbjct: 203 LDICTSICKYPDYI---KMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIK 259

Query: 148 AEN 150
              
Sbjct: 260 GSG 262


>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 199

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 20/143 (13%)

Query: 46  QLVRVLPGFGFRSSEQMELVVEEVHHSATTGLETYL---KFQFIICGI-----HCTIQLC 97
           + +  LPG G +S++++   + E        L + L   K    +C I            
Sbjct: 12  RELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDV 71

Query: 98  SSNCKYPQFMLYFGLSQDIFMFFLFFDFYKKTYWSKGGAPPP-----PPEENYLKAENKV 152
            ++    Q  +         +       Y+  Y    G   P     P + +      +V
Sbjct: 72  CADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRV 131

Query: 153 ALIKETTMEKDMQETAVNAAKEG 175
               E  +       A     EG
Sbjct: 132 GQGMEVIL-------ATGTTVEG 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,693,407
Number of extensions: 81758
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 6
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)