BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8081
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 70 VIENANITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXX 128
I I +D++ G ENVPI CVN +D + P+ Y++E + I+ N L
Sbjct: 5 AIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHL-QH 63
Query: 129 XXXXXXXXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCK 188
QL+I+ W + + + P IFECN C C
Sbjct: 64 CTCVDDCSSSNCLCGQLSIR----CWYDKDGRLLQEFNKIEPPL-----IFECNQACSCW 114
Query: 189 HTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY 248
C NRVVQ + +LQL++T GWG+R L IPQGTFIC Y G L++D++A+
Sbjct: 115 RNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED-- 172
Query: 249 GDEYLAELD 257
D YL +LD
Sbjct: 173 -DSYLFDLD 180
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GNI R++NH C PN+ VF+ D RFP ++FF+ + I G EL
Sbjct: 182 KDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELG 241
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+DY + K C CGS +C+
Sbjct: 242 FDYGDRFWDIKSKYFTCQCGSEKCKH 267
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 70 VIENANITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXX 128
I I +D++ G ENVPI CVN +D + P+ Y++E + I+ N L
Sbjct: 3 AIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHL-QH 61
Query: 129 XXXXXXXXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCK 188
QL+I+ W + + + P IFECN C C
Sbjct: 62 CTCVDDCSSSNCLCGQLSIR----CWYDKDGRLLQEFNKIEPPL-----IFECNQACSCW 112
Query: 189 HTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY 248
C NRVVQ + +LQL++T GWG+R L IPQGTFIC Y G L++D++A+
Sbjct: 113 RNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED-- 170
Query: 249 GDEYLAELD 257
D YL +LD
Sbjct: 171 -DSYLFDLD 178
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GNI R++NH C PN+ VF+ D RFP ++FF+ + I G EL
Sbjct: 180 KDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELG 239
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+DY + K C CGS +C+
Sbjct: 240 FDYGDRFWDIKSKYFTCQCGSEKCKH 265
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 76 ITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXXXXXXXX 134
I +D++ G E +PI CVN +D++ P Y+++ + I+ N L
Sbjct: 4 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHL-QYCVCIDD 62
Query: 135 XXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG---IFECNDLCKCKHTC 191
QL+++ D KD R LPE ++ IFECN C C C
Sbjct: 63 CSSSNCMCGQLSMRCWYD-------KD-----GRLLPEFNMAEPPLIFECNHACSCWRNC 110
Query: 192 HNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE 251
NRVVQ + +LQL++T GWG+R L DIP GTF+C Y G L++DS+A+ + D
Sbjct: 111 RNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE---DS 167
Query: 252 YLAELD 257
YL +LD
Sbjct: 168 YLFDLD 173
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GN+ R++NH C PN+ VF+ D RFP ++FF+ + IEAG +L
Sbjct: 175 KDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLG 234
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+DY + K+ C CGS +CR
Sbjct: 235 FDYGERFWDIKGKLFSCRCGSPKCRH 260
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 76 ITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXXXXXXXX 134
I +D++ G E +PI CVN +D++ P Y+++ + I+ N L
Sbjct: 28 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHL-QYCVCIDD 86
Query: 135 XXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG---IFECNDLCKCKHTC 191
QL+++ D KD R LPE ++ IFECN C C C
Sbjct: 87 CSSSNCMCGQLSMRCWYD-------KD-----GRLLPEFNMAEPPLIFECNHACSCWRNC 134
Query: 192 HNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE 251
NRVVQ + +LQL++T GWG+R L DIP GTF+C Y G L++DS+A+ + D
Sbjct: 135 RNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE---DS 191
Query: 252 YLAELD 257
YL +LD
Sbjct: 192 YLFDLD 197
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GN+ R++NH C PN+ VF+ D RFP ++FF+ + IEAG +L
Sbjct: 199 KDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLG 258
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+DY + K+ C CGS +CR
Sbjct: 259 FDYGERFWDIKGKLFSCRCGSPKCRH 284
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 76 ITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXXXXXXXX 134
I +D++ G E +PI CVN +D++ P Y+++ + I+ N L
Sbjct: 30 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHL-QYCVCIDD 88
Query: 135 XXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG---IFECNDLCKCKHTC 191
QL+++ D KD R LPE ++ IFECN C C C
Sbjct: 89 CSSSNCMCGQLSMRCWYD-------KD-----GRLLPEFNMAEPPLIFECNHACSCWRNC 136
Query: 192 HNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE 251
NRVVQ + +LQL++T GWG+R L DIP GTF+C Y G L++DS+A+ + D
Sbjct: 137 RNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE---DS 193
Query: 252 YLAELD 257
YL +LD
Sbjct: 194 YLFDLD 199
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GN+ R++NH C PN+ VF+ D RFP ++FF+ + IEAG +L
Sbjct: 201 KDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLG 260
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+DY + K+ C CGS +CR
Sbjct: 261 FDYGERFWDIKGKLFSCRCGSPKCRH 286
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 76 ITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVXXXXXXXX 134
I +D++ G E +PI CVN +D++ P Y+++ + I+ N L
Sbjct: 29 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHL-QYCVCIDD 87
Query: 135 XXXXXXXXWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG---IFECNDLCKCKHTC 191
QL+++ D KD R LPE ++ IFECN C C C
Sbjct: 88 CSSSNCMCGQLSMRCWYD-------KD-----GRLLPEFNMAEPPLIFECNHACSCWRNC 135
Query: 192 HNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE 251
NRVVQ + +LQL++T GWG+R L DIP GTF+C Y G L++DS+A+ + D
Sbjct: 136 RNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE---DS 192
Query: 252 YLAELD 257
YL +LD
Sbjct: 193 YLFDLD 198
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+D VY +DAR GN+ R++NH C PN+ VF+ D RFP ++FF+ + IEAG +L
Sbjct: 200 KDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLG 259
Query: 435 WDYAYDIGSVPDKVVYCYCGSSECRQ 460
+D + K+ C CGS +CR
Sbjct: 260 FDAGERFWDIKGKLFSCRCGSPKCRH 285
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 153 LWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMK 212
L ++ EP F R+ + I+ECN C C C NRVVQ L++FKT+ K
Sbjct: 88 LDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEK 147
Query: 213 GWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE---YLAELDFIETVERY 265
GWG+R L P GTFI Y G ++T ++A + KNY D+ YL +LD + Y
Sbjct: 148 GWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEY 203
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPW-VSFFALKFIEAGSEL 433
+D + Y +DA+ G++ R+ NHSC+PN+ + + V H R + ++FFA+K I+ EL
Sbjct: 198 DDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSA-VRNHGFRTIYDLAFFAIKDIQPLEEL 256
Query: 434 TWDY--AYDIGSVPDKVV----------YCYCGSSECRQRLL 463
T+DY A D V + C CGS+ CR L
Sbjct: 257 TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Query: 178 IFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAG---- 233
+FECN LC+C C NRVVQ + Q+FKT KGWGLR L IP+G F+C YAG
Sbjct: 102 VFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLG 161
Query: 234 --------HLLTDSDAN 242
HL T SD+N
Sbjct: 162 FSEVQRRIHLQTKSDSN 178
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 349 SSLLMTLQANQKKKTKRLRSLRE--YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQN 406
S + + K + + ++RE Y G+ ++ D GNIGR+LNHSC PN+ +
Sbjct: 163 SEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFV-DPTYIGNIGRFLNHSCEPNLLMIP 221
Query: 407 VFVDTHDPRFPWVSFFALKFIEAGSELTWDYA-----YDIGSVPDKVVY------CYCGS 455
V +D+ P+ ++ FA K I EL++DY+ + + +++ + CYCG+
Sbjct: 222 VRIDSMVPK---LALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGA 278
Query: 456 SEC 458
C
Sbjct: 279 KSC 281
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 380 YIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDY-- 437
+ +DA GN+ ++NHSC PN+ V NVF+D D R P ++ F+ + I AG ELT+DY
Sbjct: 205 FTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQM 264
Query: 438 --AYDIGS-----VPDKV---VYCYCGSSECRQRL 462
+ DI S P K C CG+ CR L
Sbjct: 265 KGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 178 IFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTE-MKGWGLRCLNDIPQGTFICIYAGHLL 236
I+ECN C+C C NR+VQ L +F+T +GWG++ L I + +F+ Y G ++
Sbjct: 116 IYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVI 175
Query: 237 TDSDANEEGK---NYGDEYLAELDF 258
T +A G+ N G YL +LD+
Sbjct: 176 TSEEAERRGQFYDNKGITYLFDLDY 200
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 361 KKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVS 420
K+ R +++ YF +N I+DA GN R++NHSC PN Q V+ V
Sbjct: 161 KEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQ----LRVG 216
Query: 421 FFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQRL 462
FF K + +GSELT+DY + + C+CGS+ CR L
Sbjct: 217 FFTTKLVPSGSELTFDYQFQ--RYGKEAQKCFCGSANCRGYL 256
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%)
Query: 178 IFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLT 237
+ EC+ C C NR Q +++ TE KGWGLR D+P TF+ Y G +L
Sbjct: 93 MIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLD 152
Query: 238 DSDANEEGKNYG 249
+ K Y
Sbjct: 153 HKEFKARVKEYA 164
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 348 TSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNV 407
+++ ++Q ++++K + + Y ++ ++DA GN R++NHSC PN + + +
Sbjct: 82 AGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVI 141
Query: 408 FVDTHDPRFPWVSFFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQRL 462
+D + FA++ I G ELT+DY + I +K+ C CG+ +CR+ L
Sbjct: 142 NIDGQK----HIVIFAMRKIYRGEELTYDYKFPIEDASNKLP-CNCGAKKCRKFL 191
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 178 IFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLT 237
I+EC+ C C C NRVV+ LQ+F+T+ +GWG++C +I +G F+ Y G ++T
Sbjct: 109 IYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIIT 168
Query: 238 DSDAN 242
+A+
Sbjct: 169 SEEAD 173
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 392 RYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYDIGSV------P 445
R++NHSC PN+ + D D ++ FA+K I G+ELT+DY + + P
Sbjct: 222 RFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDP 281
Query: 446 DKV---VYCYCGSSECRQRL 462
K+ C CG+++CR L
Sbjct: 282 SKISEMTKCLCGTAKCRGYL 301
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 381 IMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
I+DA GN R++NH C PN Q V+ D R V FAL I+AG+ELT++ Y+
Sbjct: 156 IIDAGPKGNYARFMNHCCQPNCETQKWSVNG-DTR---VGLFALSDIKAGTELTFN--YN 209
Query: 441 IGSVPDKVVYCYCGSSEC 458
+ + + C CG+ C
Sbjct: 210 LECLGNGKTVCKCGAPNC 227
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 178 IFECND-LCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLL 236
++EC+ +C C N+ ++++F+T +GWGLR DI +G F+ Y G L+
Sbjct: 67 LYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELI 126
Query: 237 TDSDA 241
+ +
Sbjct: 127 DEEEC 131
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 381 IMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
++D+ GN R++NHSC PN +Q V+ + +ALK + AG+ELT+DY +
Sbjct: 137 VIDSYRMGNEARFINHSCDPNCEMQKWSVNG----VYRIGLYALKDMPAGTELTYDYNFH 192
Query: 441 IGSVPDKVVYCYCGSSECR 459
+V +K C CG +CR
Sbjct: 193 SFNV-EKQQLCKCGFEKCR 210
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 180 ECN-DLCKCKHTCHN-RVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLT 237
EC+ + C C C N R+ + +Q L+ F+ E KGWG+R + G FI Y G +++
Sbjct: 50 ECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVS 109
Query: 238 DSDAN----EEGKNYGDEYLAELDFIETVERYK 266
+ + E+ N+ D Y LD ++ Y+
Sbjct: 110 EQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYR 142
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 372 YFGEDENVYIMDA-RTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
YF Y +DA R + +GR +NHS + N + +D P + A + I AG
Sbjct: 87 YFQYLSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDG----VPHLILIASRDIAAG 142
Query: 431 SELTWDYA 438
EL +DY
Sbjct: 143 EELLYDYG 150
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 388 GNIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 181 ASLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 230
>pdb|3M57|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M58|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M59|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
pdb|3M5A|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me3 Peptide And
Adohcy
Length = 261
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 185 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 388 GNIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 179 ASLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 228
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 183 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 231
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 221 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 269
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 188 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 236
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 185 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 239 SLGHKANHSFTPNC-IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 287
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 372 YFGEDENVYIMDA-RTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
YF Y +DA R + +GR +NHS N + +D P + A + I AG
Sbjct: 83 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDG----VPHLILIASRDIAAG 138
Query: 431 SELTWDYA 438
EL +DY
Sbjct: 139 EELLYDYG 146
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + ++FV PRF P L+ +EA ELT Y YD
Sbjct: 185 SLGHKANHSFTPNC-IFDMFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 372 YFGEDENVYIMDA-RTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
YF Y +DA R + +GR +NHS N + +D P + A + I AG
Sbjct: 89 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDG----VPHLILIASRDIAAG 144
Query: 431 SELTWDYA 438
EL +DY
Sbjct: 145 EELLYDYG 152
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 372 YFGEDENVYIMDA-RTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
YF Y +DA R + +GR +NHS N + +D P + A + I AG
Sbjct: 88 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDG----VPHLILIASRDIAAG 143
Query: 431 SELTWDYA 438
EL +DY
Sbjct: 144 EELLYDYG 151
>pdb|1N6A|A Chain A, Structure Of Set7/9
Length = 259
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 389 NIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN + + FV PRF P L+ +EA ELT Y YD
Sbjct: 183 SLGHKANHSFTPNC-IYDXFVH---PRFGPIKCIRTLRAVEADEELTVAYGYD 231
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 201 LQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGK 246
L L+LF +K W L ++ +PQ IC + G T +D +EG+
Sbjct: 547 LDDLKLFTESVKRWDLSLVDQMPQQMKIC-FVGFYNTFNDIAKEGR 591
>pdb|3SNZ|A Chain A, Crystal Structure Of A Mutant W39d Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 48 SGWTVDVYENDNFTGTKWT 66
>pdb|3SNY|A Chain A, Crystal Structure Of A Mutant T82r Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 48 SGWTVDVYENDNFTGTKWT 66
>pdb|3SO0|A Chain A, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|B Chain B, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|C Chain C, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|D Chain D, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|E Chain E, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|F Chain F, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|G Chain G, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|H Chain H, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 48 SGWTVDVYENDNFTGTKWT 66
>pdb|3SO1|A Chain A, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|B Chain B, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|C Chain C, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|D Chain D, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|E Chain E, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|F Chain F, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|G Chain G, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|H Chain H, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 48 SGWTVDVYENDNFTGTKWT 66
>pdb|3I9H|A Chain A, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|B Chain B, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|C Chain C, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|D Chain D, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|E Chain E, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|F Chain F, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|G Chain G, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|H Chain H, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
Length = 88
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 46 SGWTVDVYENDNFTGTKWT 64
>pdb|3IAJ|A Chain A, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii-In Alternate Space Group I422
Length = 87
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 35 AKWTIDMFEYDHFVSSKWT 53
+ WT+D++E D+F +KWT
Sbjct: 45 SGWTVDVYENDNFTGTKWT 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,913,290
Number of Sequences: 62578
Number of extensions: 450372
Number of successful extensions: 1001
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 67
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)