RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8081
(463 letters)
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 165 bits (418), Expect = 1e-47
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 11/188 (5%)
Query: 62 FVDCLREFVIENANITIKDMSNGRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINT 120
D + I +D++ G E +PI CVN +D++ P Y+++ + I+
Sbjct: 16 LQDSAPDRPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDR 75
Query: 121 NKEFLVCCDCTDDCRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFE 180
N L C C DDC N C C QL+++ D P+ L IFE
Sbjct: 76 NITHLQYCVCIDDCSSSN-CMCGQLSMRCWYDKDGRLLPEF--NMAEPPL-------IFE 125
Query: 181 CNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSD 240
CN C C C NRVVQ + +LQL++T GWG+R L DIP GTF+C Y G L++DS+
Sbjct: 126 CNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSE 185
Query: 241 ANEEGKNY 248
A+ ++
Sbjct: 186 ADVREEDS 193
Score = 123 bits (311), Expect = 2e-32
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
+D VY +DAR GN+ R++NH C PN+ VF+ D RFP ++FF+ + IEAG
Sbjct: 198 LDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 257
Query: 432 ELTWDYAYDIGSVPDKVVYCYCGSSECR 459
+L +DY + K+ C CGS +CR
Sbjct: 258 QLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 163 bits (413), Expect = 8e-47
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 16/201 (7%)
Query: 84 GRENVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVCCDCTDDCR-DRNNCA 141
+PIS VN D + ++ + V + ++ F V C C D + C
Sbjct: 6 THAQLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA-DQSFRVGCSCASDEECMYSTCQ 64
Query: 142 CWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG--------IFECNDLCKCKHTCHN 193
C S + + K Y ++ + ++ I+EC+ C C C N
Sbjct: 65 CLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPN 124
Query: 194 RVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY----- 248
RVV+ LQ+F+T+ +GWG++C +I +G F+ Y G ++T +A+
Sbjct: 125 RVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARR 184
Query: 249 GDEYLAELDFIETVERYKEAY 269
D YL LD +
Sbjct: 185 KDVYLFALDKFSDPDSLDPLL 205
Score = 118 bits (296), Expect = 3e-30
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 371 EYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
+D R++NHSC PN+ + D D ++ FA+K I G
Sbjct: 201 LDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKG 260
Query: 431 SELTWDYAYDIGSV---------PDKVVYCYCGSSECRQRL 462
+ELT+DY + + ++ C CG+++CR L
Sbjct: 261 TELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 159 bits (403), Expect = 2e-45
Identities = 53/199 (26%), Positives = 78/199 (39%), Gaps = 15/199 (7%)
Query: 74 ANITIKDMSNGRENVPISCVNYIDTDVPKTVDYMTERKPKEGVTINTNKEFLVCCDCTDD 133
A D++ G+EN+P+ P Y + G I+ + C C
Sbjct: 10 APTEQLDVACGQENLPVGAWP--PGAAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKT 67
Query: 134 CRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHN 193
C+C + + + S +D P +FECN LC+C C N
Sbjct: 68 PCLPGTCSCLRH----GENYDDNSCLRDIGSGGKYAEP------VFECNVLCRCSDHCRN 117
Query: 194 RVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY---GD 250
RVVQ + Q+FKT KGWGLR L IP+G F+C YAG +L S+
Sbjct: 118 RVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDS 177
Query: 251 EYLAELDFIETVERYKEAY 269
Y+ + + E +
Sbjct: 178 NYIIAIREHVYNGQVMETF 196
Score = 113 bits (283), Expect = 2e-28
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 371 EYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
+ +D GNIGR+LNHSC PN+ + V +D+ P ++ FA K I
Sbjct: 186 HVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSM---VPKLALFAAKDIVPE 242
Query: 431 SELTWDYAYDIGSVPDKV-----------VYCYCGSSECRQRL 462
EL++DY+ ++ CYCG+ C L
Sbjct: 243 EELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 158 bits (402), Expect = 3e-45
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 63 VDCLREFVIENANITIKDMSNGRENVPISCVNYIDTDVPKTVD--YMTERKPKEGVTINT 120
+D + E ++ VN +D + ++D ++++ + +GV I
Sbjct: 3 LDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGV-IPP 61
Query: 121 NKEFLVCCDCTD----DCRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVS 176
+ F C+C+ D + + C C EP F R+ +
Sbjct: 62 DPNFQSGCNCSSLGGCDLNNPSRCECLDDL----------DEPTHFAYDAQGRVRADTGA 111
Query: 177 GIFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLL 236
I+ECN C C C NRVVQ L++FKT+ KGWG+R L P GTFI Y G ++
Sbjct: 112 VIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVI 171
Query: 237 TDSDANEEGKNYGDE---YLAELDFIETVERY 265
T ++A + KNY D+ YL +LD + Y
Sbjct: 172 TSAEAAKRDKNYDDDGITYLFDLDMFDDASEY 203
Score = 118 bits (298), Expect = 2e-30
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 373 FGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSE 432
+D + Y +DA+ G++ R+ NHSC+PN+ + + + ++FFA+K I+ E
Sbjct: 196 MFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEE 255
Query: 433 LTWDYAYDIGSVPD------------KVVYCYCGSSECRQRL 462
LT+DYA P C CGS+ CR L
Sbjct: 256 LTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 116 bits (292), Expect = 1e-29
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 79 KDMSNGRENVPISCVNYIDTDV-PKTVDYMTERKPKEGVTINTNKEFLVCCDCTDDCRDR 137
+ I N +D + P Y+ E KP G+++ E C CTD +
Sbjct: 33 ELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVN--EATFGCSCTDCFFQK 90
Query: 138 NNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHNRVVQ 197
C +N+++ + I+ECN C+C C NR+VQ
Sbjct: 91 C-CPA--------------EAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQ 135
Query: 198 FPMLQKLQLFKTE-MKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY---GDEYL 253
L +F+T +GWG++ L I + +F+ Y G ++T +A G+ Y G YL
Sbjct: 136 KGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYL 195
Query: 254 AELDF 258
+LD+
Sbjct: 196 FDLDY 200
Score = 108 bits (272), Expect = 6e-27
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 375 EDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELT 434
+ + + +DA GN+ ++NHSC PN+ V NVF+D D R P ++ F+ + I AG ELT
Sbjct: 200 YESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELT 259
Query: 435 WDYAYDIGSVPD------------KVVYCYCGSSECRQRL 462
+DY C CG+ CR L
Sbjct: 260 FDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 100 bits (251), Expect = 3e-24
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
YF +N I+DA GN R++NHSC PN Q V+ R V FF K + +GS
Sbjct: 172 YFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVN-GQLR---VGFFTTKLVPSGS 227
Query: 432 ELTWDYAYDIGSVPDKVVYCYCGSSECRQRL 462
ELT+DY + + C+CGS+ CR L
Sbjct: 228 ELTFDYQFQ--RYGKEAQKCFCGSANCRGYL 256
Score = 99.9 bits (249), Expect = 6e-24
Identities = 40/185 (21%), Positives = 57/185 (30%), Gaps = 37/185 (20%)
Query: 89 PISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVCCDC-----TDDCRDRNNCAC 142
P +P D + E N + + C + D R + AC
Sbjct: 24 PQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIAC 83
Query: 143 WQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHNRVVQFPMLQ 202
+ NR L + EC+ C C NR Q
Sbjct: 84 GE-------------------DCLNRLL-------MIECSSRCPNGDYCSNRRFQRKQHA 117
Query: 203 KLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDE-----YLAELD 257
+++ TE KGWGLR D+P TF+ Y G +L + K Y Y L
Sbjct: 118 DVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALK 177
Query: 258 FIETV 262
E +
Sbjct: 178 NDEII 182
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 98.9 bits (247), Expect = 4e-24
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 369 LREYFGEDENVYIM--------DARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVS 420
+ E + + Y + D+ GN R++NHSC PN +Q V+ R +
Sbjct: 117 MIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVN-GVYR---IG 172
Query: 421 FFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQRL 462
+ALK + AG+ELT+DY + +V +K C CG +CR +
Sbjct: 173 LYALKDMPAGTELTYDYNFHSFNV-EKQQLCKCGFEKCRGII 213
Score = 92.4 bits (230), Expect = 1e-21
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 33/148 (22%)
Query: 121 NKEFLVCCDCTDDCRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFE 180
+ C+C D C NR + E
Sbjct: 18 SGYEATTCNCKKPDDD-TRKGCVD-------------------DCLNRMI-------FAE 50
Query: 181 CN-DLCKCKHTCHNRVVQF-PMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTD 238
C+ + C C C N+ +Q +Q L+ F+ E KGWG+R + G FI Y G ++++
Sbjct: 51 CSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSE 110
Query: 239 SDA----NEEGKNYGDEYLAELDFIETV 262
+ E+ N+ D Y LD +
Sbjct: 111 QEFRNRMIEQYHNHSDHYCLNLDSGMVI 138
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 93.2 bits (232), Expect = 6e-22
Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 30/164 (18%)
Query: 109 ERKPKEGVTINTNKEFLVCCDCTDDCRDRNNCACWQLTIKGSRDLWNVSEPKDFVGY--- 165
++KP I N+ T D + C C + ++ G
Sbjct: 14 DKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNC-------------KATDENPCGIDSE 60
Query: 166 -QNRRLPEHVVSGIFECN-DLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIP 223
NR L ++EC+ +C C N+ ++++F+T +GWGLR DI
Sbjct: 61 CINRML-------LYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIK 113
Query: 224 QGTFICIYAGHLLTDSDANEEGKNY-----GDEYLAELDFIETV 262
+G F+ Y G L+ + + + + Y+ LD +
Sbjct: 114 KGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRII 157
Score = 91.7 bits (228), Expect = 2e-21
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
Y + I+DA GN R++NH C PN Q V+ D R V FAL I+AG+
Sbjct: 147 YMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVN-GDTR---VGLFALSDIKAGT 202
Query: 432 ELTWDYAYDIGSVPDKVVYCYCGSSECRQRL 462
ELT++Y + + + C CG+ C L
Sbjct: 203 ELTFNYNLE--CLGNGKTVCKCGAPNCSGFL 231
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 81.2 bits (201), Expect = 4e-18
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
F D++ + DA GN R++NHSC PN + + + +D + FA++ I G
Sbjct: 107 MFRIDDSEVV-DATMHGNAARFINHSCEPNCYSRVINID-GQKH---IVIFAMRKIYRGE 161
Query: 432 ELTWDYAYDIGSVPDKVVYCYCGSSECR 459
ELT+DY + I +K+ C CG+ +CR
Sbjct: 162 ELTYDYKFPIEDASNKLP-CNCGAKKCR 188
Score = 57.7 bits (140), Expect = 6e-10
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 180 ECNDLCKCKHTCHNRVVQFPMLQK-----LQLFKTEMKGWGLRCLNDIPQGTFICIYAGH 234
+ +F L+K + ++++ + G GL C +I G + YAG+
Sbjct: 27 KSARRATSMDLPMPM--RFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGN 84
Query: 235 LLTDSDANEEGKNYGDE----YLAELD 257
++ ++ K Y + Y+ +D
Sbjct: 85 VIRSIQTDKREKYYDSKGIGCYMFRID 111
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 71.2 bits (175), Expect = 8e-15
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 372 YFGEDENVYIMDARTSGN-IGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAG 430
YF Y +DA N +GR +NHS N + +D P + A + I AG
Sbjct: 88 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDID-GVPH---LILIASRDIAAG 143
Query: 431 SELTWDYAYDIGSVPDK 447
EL +DY + +
Sbjct: 144 EELLFDYGDRSKASIEA 160
Score = 68.5 bits (168), Expect = 7e-14
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 181 CNDLCKC-KHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDS 239
+ + + +++ + +++ + KG G+ +G F+ Y G L+ +
Sbjct: 8 SKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEIT 67
Query: 240 DANEEGKNYGDE 251
DA + Y +
Sbjct: 68 DAKKREALYAQD 79
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 68.2 bits (166), Expect = 5e-13
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 358 NQKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFP 417
++ ++ LR F + A+ ++NH C PN FV T
Sbjct: 173 SEIEENMLLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCK----FVSTGRDT-- 226
Query: 418 WVSFFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQR 461
AL+ IE G E++ Y + +C C + E R
Sbjct: 227 -ACVKALRDIEPGEEISCYYGDGF--FGENNEFCECYTCERRGT 267
Score = 37.0 bits (85), Expect = 0.010
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 207 FKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDEYLAELDF 258
+ +E G + + + I + G + S+ E E + +
Sbjct: 141 YSSEQNGAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMY 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 8e-11
Identities = 58/371 (15%), Positives = 104/371 (28%), Gaps = 108/371 (29%)
Query: 138 NNCACWQ-LTIKGSRDLWNVSEP--KDFVGYQNRRLPEHVVSGIFECNDLCKCKHTC--- 191
N ++ L RDL+ D + + L ++ + +
Sbjct: 165 NTDDYFEEL-----RDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFT--QGLNIL 216
Query: 192 ---HNRV------------VQFPMLQKLQL--FKTEMKGWGLR--CLNDIPQGTFIC--- 229
N + P++ +QL + K G L +G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 230 IYAGHLLTDSDANEEGKNYGDEYLAELDFIETVERYKEAYESDVPEEDMVEDDEAENENS 289
+ + ++D+ E + + L FI R EAY + ++ED NE
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEG- 333
Query: 290 DEESP-------------------NSNSNED--------NSQDKAILNSDDETENSSNAD 322
SP NS+ N ++ S
Sbjct: 334 -VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--------SGPPQ 384
Query: 323 S-DHIRSRLRKRKRKQKADKKE---GKRKT--------------SSLLMTLQANQKKKTK 364
S + LRK K D+ +RK S LL+ A+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV--PASDLINKD 442
Query: 365 RLRSLREYFGEDEN--VYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPW---V 419
+++ + +D VY D ++ R L+ S + + V + W
Sbjct: 443 LVKNNVSFNAKDIQIPVY--DTFDGSDL-RVLSGSISERI-VDCIIRLPVK----WETTT 494
Query: 420 SFFALKFIEAG 430
F A ++ G
Sbjct: 495 QFKATHILDFG 505
Score = 51.2 bits (122), Expect = 6e-07
Identities = 46/256 (17%), Positives = 71/256 (27%), Gaps = 122/256 (47%)
Query: 151 RDLWN-----------------VSE-PKD----FVGYQNRRLPEHVVSGIFE-CNDLCKC 187
+D+WN V P + F G + +R+ E+ + IFE D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK-- 1700
Query: 188 KHTCHNRVVQFPML-----------QKLQLFKTE----------------MKGWGLRCLN 220
++ F + +K L T+ +K GL
Sbjct: 1701 --LKTEKI--FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL---- 1752
Query: 221 DIPQGTFICIYAGHLLTDSDANEEGKNYGDEY-----LAE-LDFIETVE--RYK-EAYES 271
IP +AGH L G EY LA+ + VE Y+ +
Sbjct: 1753 -IPAD---ATFAGHSL--------G-----EYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 272 DVPEE-------DMVE----------DDEAENENSDEESPNS-------NSNEDNSQ--- 304
VP + M+ EA + + N N +N Q
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 305 -------DKA--ILNS 311
D +LN
Sbjct: 1856 AGDLRALDTVTNVLNF 1871
Score = 38.1 bits (88), Expect = 0.007
Identities = 49/342 (14%), Positives = 84/342 (24%), Gaps = 128/342 (37%)
Query: 150 SRDLWNVSEPKD-------FVGYQNRRLPEHVVS----------GIFEC-----NDLCKC 187
+ EP F+GY + + V FE ND+
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--- 101
Query: 188 KHTCHNRVVQFPMLQKLQLFKTEMKGWGLRC------LNDIPQGTFICIYAGHLLTDSDA 241
H + L KT K ++ + P + L +
Sbjct: 102 ----HALAAKLLQENDTTLVKT--KEL-IKNYITARIMAKRP----FDKKSNSALFRAVG 150
Query: 242 NEEGKNY----G----DEYLAELDFIETVERYKEAYESDVPEEDMVEDDEAENENSDEES 293
+ G D+Y EL + Y + Y V D+++ +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEEL-----RDLY-QTYHVLV--GDLIKFSAETLSELIRTT 202
Query: 294 PNSNSNEDNSQD-KAILNSDDETENSSNADSDHIRSRLRKRKRKQKADKKEGKRKTSSL- 351
++ + L + T D D++ S S
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNT-----PDKDYLLS------------------IPISCP 239
Query: 352 LMTL-QANQKKKTKRLRSLREYFGEDENVYIMDARTSG-NIGRYLNHSCTPNVFVQNVFV 409
L+ + Q Y++ A+ G G ++ Q +
Sbjct: 240 LIGVIQLAH--------------------YVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 410 -------DTHDPRFPWVSFF--ALKFIEAGSELTWDYAYDIG 442
D+ W SFF K I L + IG
Sbjct: 280 AVAIAETDS------WESFFVSVRKAITV---LFF-----IG 307
Score = 35.8 bits (82), Expect = 0.040
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 71/225 (31%)
Query: 62 FVDCLREFVIENANITIKDMSNGRENV-----PIS----CVNYIDTDVPKTVDY----MT 108
+V+ + + I + NG +N+ P S + P +D +
Sbjct: 352 YVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 109 ERKPKEGVTINTNKEFL-VCC--------DCTDDCRDRNNCACWQLTIKGSRDL----WN 155
ERK K FL V +D ++ D+ ++
Sbjct: 411 ERKLKFSN------RFLPVASPFHSHLLVPASDLINKD--LVKNNVSFNAK-DIQIPVYD 461
Query: 156 VSEPKDFVGYQNRRLPEHVVSGIFEC--------NDLCKCKHTCHNRVVQF-P--MLQKL 204
+ D R L + I +C + K T H ++ F P
Sbjct: 462 TFDGSDL-----RVLSGSISERIVDCIIRLPVKWETTTQFKAT-H--ILDFGPGGASGLG 513
Query: 205 QLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYG 249
L G G+R I AG L D + +++ YG
Sbjct: 514 VLTHRNKDGTGVR-----------VIVAGTL--DINPDDD---YG 542
Score = 30.8 bits (69), Expect = 1.4
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 21/62 (33%)
Query: 132 DDCRDRNN-CACWQLTIKG-SRDLWNVSEPKDFVGYQNRRLPEH--------------VV 175
+D + N L+I +++ + +D+V N LP VV
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQE-----QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 176 SG 177
SG
Sbjct: 380 SG 381
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 57.7 bits (140), Expect = 1e-10
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 370 REYFGEDENVYIMDAR----TSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALK 425
+ +G Y+ + + G NHS PN + + R + F +K
Sbjct: 40 NDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHE---LTAGLKR---MRIFTIK 93
Query: 426 FIEAGSELTWDYAYD 440
I G E+T Y D
Sbjct: 94 PIAIGEEITISYGDD 108
Score = 50.0 bits (120), Expect = 6e-08
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 202 QKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY 248
++ + K+ + G+G+ +G + + + D ++Y
Sbjct: 4 DRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDY 50
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 60.8 bits (147), Expect = 1e-10
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
Query: 359 QKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPW 418
++ LR+ F + A+ ++NH C PN +
Sbjct: 145 READEGLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNA------- 197
Query: 419 VSFFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQR 461
L+ IE G E+T Y +K +C C + E +
Sbjct: 198 ACVKVLRDIEPGDEVTCFYGEGFFG--EKNEHCECHTCERKGE 238
Score = 33.5 bits (76), Expect = 0.10
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 207 FKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGD 250
+ E G + + + + G + +A+E G+
Sbjct: 113 YSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGE 156
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 59.4 bits (143), Expect = 4e-10
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 380 YIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAY 439
Y ++ ++G NHS TPN + H P L+ +EA ELT Y Y
Sbjct: 176 YNHVSKYCASLGHKANHSFTPNCIYD---MFVHPRFGPIKCIRTLRAVEADEELTVAYGY 232
Query: 440 DI 441
D
Sbjct: 233 DH 234
Score = 48.2 bits (114), Expect = 2e-06
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 176 SGIFECNDLCKCKHTCHNRVVQFPMLQKLQLFK---TEMKGWGLRCLNDIPQGTFICIYA 232
+ ++ + N ++ P + G GL + T + Y
Sbjct: 83 NSVYHFDK-STSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYN 141
Query: 233 GHLLTDSDANEEGKNYGDEYLAELD 257
G +T + + + LD
Sbjct: 142 GVRITHQEVDSRDWAL-NGNTLSLD 165
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 45.8 bits (108), Expect = 4e-06
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 388 GNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
GN RY+N +C+ QN+F + + + LK I G EL Y +
Sbjct: 97 GNWLRYVNWACSGEE--QNLFPLEINRA---IYYKTLKPIAPGEELLVWYNGE 144
Score = 33.5 bits (76), Expect = 0.052
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 202 QKLQLFKTEM--KGWGLRCLNDIPQGTFICIYAGHLLTDSDANE 243
++++LF + + G+ I +G + G S
Sbjct: 29 EEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKN 72
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 45.5 bits (107), Expect = 5e-06
Identities = 11/106 (10%), Positives = 26/106 (24%), Gaps = 5/106 (4%)
Query: 356 QANQKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPR 415
+ K + + G + Y+ + QN+ V
Sbjct: 67 HVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQE--QNLEVVQIGTS 124
Query: 416 FPWVSFFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECRQR 461
+ + A++ I EL Y + + + +
Sbjct: 125 ---IFYKAIEMIPPDQELLVWYGNSHNTFLGIPGVPGLEEDQKKNK 167
Score = 30.1 bits (67), Expect = 1.1
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 212 KGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDEYLAELDFIETVERYKEAYES 271
+G G+ I GT + + G ++ + N L + E Y
Sbjct: 39 EGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNN-------NLMWEVFNEDGTVRYFI 91
Query: 272 DVPEEDMVEDDEAENENSDEESPNSNSNEDNSQ 304
D +ED +E+ N + +
Sbjct: 92 DASQEDHRSWMTYIKCARNEQEQNLEVVQIGTS 124
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 47.2 bits (111), Expect = 6e-06
Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 32/276 (11%)
Query: 203 KLQLFKTEMKGWGLRCLNDIPQGTFICI---YAGHLLTDSDANEEGKNYGDEYLAELDFI 259
K++ F T +G GLR + + G + A + D L + +
Sbjct: 6 KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVC-----KGSRGVVCDRCLLGKEKL 60
Query: 260 ETVERYKEA-YESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAI--LNSDDETE 316
+ + A Y S ++ D + E + P + + + L +E
Sbjct: 61 MRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSE 120
Query: 317 NSSNADSDHIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGED 376
+ + S + K +K ++ + + + +
Sbjct: 121 SEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI 180
Query: 377 ENVYIMDARTSGNIGR-------YLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEA 429
N + + +G LNHSC PN + VF H + A++ IE
Sbjct: 181 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSI--VFNGPH------LLLRAVRDIEV 232
Query: 430 GSELTWDYAYDIGSVPD-----KVVYCY-CGSSECR 459
G ELT Y + + + + YC+ C C+
Sbjct: 233 GEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQ 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 77/530 (14%), Positives = 149/530 (28%), Gaps = 188/530 (35%)
Query: 43 EYDHFVSSK----------WTIDMFE---YDHFV-DCLR---EFVIENANITIKDMSNGR 85
E DH + SK WT+ + FV + LR +F++ + S
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 86 ENVPISCVNYIDTDVPKTVDYMTER--------------KPKEGVTIN----TNKEFLV- 126
I + + D Y R +P + V I+ + K ++
Sbjct: 110 RMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 127 ----------------------CCDCTDDCRDRNNCACWQLT---IKGSRDLWNVSEPKD 161
C+ + + +Q+ S N+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 162 FVGYQNRRL---PEHVVS----------GIFECNDLCKCK-----------------HTC 191
+ + RRL + + +L CK T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTT 287
Query: 192 HNRVVQFPMLQKLQLFKTEMKGWGLRCLN----DIP----QGT--FICIYAGHLLTDSDA 241
H + M L E+K L+ L+ D+P + I A +
Sbjct: 288 HISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 242 NEEGKNYGDEYLAE-----LDFIETVERYKEAYES--------DVPEE-------DMVED 281
+ K+ + L L+ +E E Y++ ++ +P D+++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 282 DEAENENSD------EESPNSNS------------NEDNSQD--KAILNSDDETENSSNA 321
D N E+ P ++ +N ++I++ + + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 322 D-----SD-----HIRSRLRKRKRKQKAD--KK--------EGK-RKT-------SSLLM 353
D D HI L+ + ++ + E K R S+L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 354 TLQANQKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVF 403
TLQ +L+ + Y +++ Y R I +L N+
Sbjct: 523 TLQ--------QLKFYKPYICDNDPKY---ERLVNAILDFL-PKIEENLI 560
Score = 44.1 bits (103), Expect = 1e-04
Identities = 45/351 (12%), Positives = 93/351 (26%), Gaps = 99/351 (28%)
Query: 45 DHFVSSKWTIDMFEYDHFVDCLREFVI-ENANITIKDMSNGRENVPISCVNYIDTDVP-- 101
+ V + + F + C + + +T D + IS ++ T P
Sbjct: 251 LN-VQNAKAWNAFN----LSC-KILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDE 302
Query: 102 ------KTVDYMTERKPKEGVTINTNKEFLVCCDCTDDCRDRNN-------CACWQL--T 146
K +D + P+E +T N + RD C +L
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 147 IKGSRD------------------------------LWN---VSEPKDFV-GYQNRRLPE 172
I+ S + +W S+ V L E
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 173 -HVVSGIFECNDL-----CKCKH--TCHNRVV-QFPMLQKLQLFKTEMKGWGLRCLNDIP 223
+ K ++ H +V + + + L
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD----------LIPPY 468
Query: 224 QGTFICIYAGHLLTDSDANEEGKNYGDEYLAELDFIE-TVERYKEAYESDVPEEDMVEDD 282
+ + GH L + + E + +L + F+E + A+ + + ++
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 283 E------AENENSDEE--------SPNSNSNEDNSQDKAILNSDDETENSS 319
+ +N+ E P N S+ +L E+ +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 31.0 bits (69), Expect = 0.95
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 32/140 (22%)
Query: 6 NKKCI-MYTAPCGRTLRTSDQLVLYLFITKAKWTIDMFEYDHFVSSKWTIDMFEYDH--- 61
++ + Y P +T + D + YL D + Y H I+ E
Sbjct: 446 HRSIVDHYNIP--KTFDSDDLIPPYL---------DQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 62 --FVDCLREFVIENANITIKDMSNGRENVPISCVNYIDTDVPKTVDYMTERKPKEGVTIN 119
F+D R F +E I+ S N S +N + + Y+ + PK +N
Sbjct: 495 MVFLD-FR-F-LEQ---KIRHDSTAW-NASGSILNTL-QQLKFYKPYICDNDPKYERLVN 546
Query: 120 TNKEFL-------VCCDCTD 132
+FL +C TD
Sbjct: 547 AILDFLPKIEENLICSKYTD 566
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 42.7 bits (100), Expect = 4e-05
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 10/100 (10%)
Query: 343 EGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDART--SGNIGRYLNHSCTP 400
EG S L+ L + + N ++ +
Sbjct: 50 EGPLVRGS---ELKDCYIHLKVSLDKGDRKERDLHEDLWFELSDETLCNWMMFVRPAQNH 106
Query: 401 NVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
QN+ + V + +K +E EL YA
Sbjct: 107 LE--QNLVAYQYGHH---VYYTTIKNVEPKQELKVWYAAS 141
Score = 28.5 bits (63), Expect = 2.5
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 212 KGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY 248
G+ IP+ T G L+ S+ + +
Sbjct: 30 FLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHL 66
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 41.8 bits (98), Expect = 9e-05
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 343 EGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYI-MDARTSGNIGRYLNHSCTPN 401
G++ S + + Y I N ++ +
Sbjct: 54 IGQQSHSMEVAEWTDKAVNH-----IWKIYHNGVLEFCIITTDENECNWMMFVRKARNRE 108
Query: 402 VFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
QN+ HD + + F + I +EL + Y+ D
Sbjct: 109 E--QNLVAYPHDGK---IFFCTSQDIPPENELLFYYSRD 142
Score = 34.1 bits (78), Expect = 0.031
Identities = 6/36 (16%), Positives = 8/36 (22%)
Query: 212 KGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKN 247
G+ IP T G + E
Sbjct: 34 AEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDK 69
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 352 LMTLQANQKKKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDT 411
+ T K ++ GE + N RY+N + +P QN+
Sbjct: 93 IYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPRE--QNLAACQ 150
Query: 412 HDPRFPWVSFFALKFIEAGSELTWDYAYD 440
+ + F+ +K I A EL Y D
Sbjct: 151 NGMN---IYFYTIKPIPANQELLVWYCRD 176
Score = 33.2 bits (75), Expect = 0.10
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 197 QFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKN 247
P + + G+ IP+GT G + T+ +
Sbjct: 55 SLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANR 105
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 37.9 bits (87), Expect = 0.005
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 393 YLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDY 437
+NHSC PNV V + T A++ I G E+ Y
Sbjct: 204 LMNHSCCPNVIV--TYKGTL------AEVRAVQEIHPGDEVFTSY 240
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 37.2 bits (85), Expect = 0.011
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 393 YLNHSCTPNVFV-----QNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAY 439
+NH C PN V + V + + AL I G ELT Y
Sbjct: 203 LVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYID 254
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 35.6 bits (81), Expect = 0.022
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 371 EYFGEDENVYIMDAR--TSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIE 428
++ +D T N RY+ S QN+ H R + F A + I
Sbjct: 119 LIVDKNNRYKSIDGSDETKANWMRYVVISREER--EQNLLAFQHSER---IYFRACRDIR 173
Query: 429 AGSELTWDYAYDIG 442
G L Y+ D
Sbjct: 174 PGEWLRVWYSEDYM 187
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 34.3 bits (78), Expect = 0.030
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 269 YESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAILNSDDETENSSNADSDHIRS 328
YE + + +D SDEE+ + + T + D
Sbjct: 4 YEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 329 RLRKRKRKQKADKKEGKRKTSSLL 352
RK +++ K +R T+ +
Sbjct: 64 IRRKTLKEKAIPKD--QRATTPYM 85
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 31.8 bits (72), Expect = 0.41
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 243 EEGKNYGDEYLAELDFIETVERYKEAYESDVPEE----DMVEDDEAENENSDEESPNSNS 298
E+G N +AE + E + E Y EE D++ N D ++
Sbjct: 15 EDGINQVQCSVAE--YPEAITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 72
Query: 299 NEDNSQDKAILNSDDETENSSNADSDHIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQAN 358
+ SQ+ + D++ E+ + +D S + R++ A+ + T + +
Sbjct: 73 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 132
Query: 359 QKKKTKRLRSLREYFGE 375
+ + L E F +
Sbjct: 133 HATAQEEILKLSEVFKQ 149
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 31.6 bits (72), Expect = 0.43
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 388 GNIGRYLNHSCTPNVFVQNVFVDTHDPRF-PWVSFFALKFIEAGSELTWDYAYD 440
++G NHS TPN ++ PRF P L+ +EA ELT Y YD
Sbjct: 238 ASLGHKANHSFTPNC----IYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 287
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 32.2 bits (72), Expect = 0.44
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 252 YLAELDFIETVERYKEAYESDVPE----------EDMVEDDEAENENSDEESPNSNSNED 301
+ L V++ + ++ P ED+V D ++ + E S +N +
Sbjct: 575 PDSGLGNDNAVKQAETLFQQICPNEDFCPAPPNPEDIVLDGDSSQQEVPESSVTPETNSE 634
Query: 302 NSQDKAILNSDDE 314
++ +L + +E
Sbjct: 635 TPKESTVLGNPEE 647
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 31.1 bits (69), Expect = 0.82
Identities = 8/65 (12%), Positives = 23/65 (35%)
Query: 260 ETVERYKEAYESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAILNSDDETENSS 319
+E + SDV ++ + + + + N N ++++E E +
Sbjct: 292 IIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAK 351
Query: 320 NADSD 324
+ +
Sbjct: 352 SNEDP 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.84
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 359 QKKKTKRLR-SLREY 372
+K+ K+L+ SL+ Y
Sbjct: 18 EKQALKKLQASLKLY 32
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.85
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 320 NADSDHIRS-RLRKRKRKQKADKKEGKRKTSSLL---------MTLQANQKKKTKRL-RS 368
+ + IR R +RKR Q+ D + Q+ Q +K K R
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 369 LREYFGEDEN 378
+ F + +
Sbjct: 141 ADKAFYQQPD 150
Score = 28.6 bits (63), Expect = 2.9
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 260 ETVERYKEAYESDVPEEDMVE--DDEAENENSDEESPNSNSNEDNSQDKAIL-NSDDETE 316
E++ +++E + E D ++ E + ++ N + +K + N +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 317 NSSNADSDHI 326
D+D I
Sbjct: 145 FYQQPDADII 154
Score = 27.4 bits (60), Expect = 8.4
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 236 LTDSDANEEGKNYGDEYLAELDFIETVERYKEAYESDVPEEDMVEDDEAENENSDEE 292
L + DA + E E ++ E + + + VE ++ N +D+
Sbjct: 98 LQELDAASKVM------EQEW--REKAKKDLEEWNQR--QSEQVEKNKINNRIADKA 144
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 30.6 bits (68), Expect = 1.1
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 263 ERYKEAYESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAILNSDDETENSSNAD 322
+ + + D P +D + + E + + + + S+ E + D
Sbjct: 315 DMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSH---RSERERRRDRDRD 371
Query: 323 SDHIRSRLRK-RKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYI 381
D R R R ++ D+ G + N + + + EN Y+
Sbjct: 372 RDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYL 431
Query: 382 MDA 384
M+A
Sbjct: 432 MEA 434
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc
19718}
Length = 229
Score = 30.2 bits (67), Expect = 1.1
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 337 QKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIM 382
+KAD+ + + + + ++ + L + +EN +M
Sbjct: 14 EKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVM 59
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.5 bits (68), Expect = 1.2
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 2/121 (1%)
Query: 230 IYAGHLLTDSDANEEGKNYGDEYLAELDFIETVERYKEAYESDVPEEDMVEDDEAENENS 289
I G L D ++ L D + VE + ED N
Sbjct: 511 IRNGSRLQADDFLQD-YTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNG 569
Query: 290 DEESPNSNSNEDNSQDKAILNSDDETENSSNADSDHIRSRLRKRKRKQKADKKEGKRKTS 349
++ +++ QD ++ DE ++S+NAD R RKRK +K + + +
Sbjct: 570 SDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEE-ERSRKRKLDEKENLSAKRSRIE 628
Query: 350 S 350
Sbjct: 629 Q 629
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 29.3 bits (65), Expect = 1.3
Identities = 11/68 (16%), Positives = 23/68 (33%)
Query: 271 SDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAILNSDDETENSSNADSDHIRSRL 330
SD E++ D A E +E + N + Q + T + + S
Sbjct: 2 SDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSG 61
Query: 331 RKRKRKQK 338
+ ++ +
Sbjct: 62 KAVAKEDR 69
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40;
alpha-hairpin fold, coiled coil-helix-coiled coil-helix
domain; NMR {Homo sapiens} PDB: 2l0y_A
Length = 146
Score = 29.0 bits (64), Expect = 1.9
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 214 WGLRCLNDIPQGT--------FICIYAGHLLTDSDANEEGKNYGDEYLAELDFIETVERY 265
W CL + G F C S +G + D++ A E +++Y
Sbjct: 55 WNCPCLGGMASGPCGEQFKSAFSC------FHYSTEEIKGSDCVDQFRA---MQECMQKY 105
Query: 266 KEAYESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKA 307
+ Y + +E+ E ++ E ++E +P + + +
Sbjct: 106 PDLYPQEDEDEE-EEREKKPAEQAEETAPIEATATKEEEGSS 146
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.5 bits (63), Expect = 2.7
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKR 365
+ +L+ K K+KA+K K + + T + K+ +
Sbjct: 104 NREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAK 144
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/48 (16%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 260 ETVERYKEAYESDVPEEDMVEDDEAENE--NSDEESPNSNSNEDNSQD 305
+ ++ + + ++ +D ED++ + +SD+E+ +N + + D
Sbjct: 234 DLLQEAIDFAQKEINGDDD-EDEDDSDNVMSSDDENAPVATNANATTD 280
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 28.5 bits (63), Expect = 3.2
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDA 384
H RSR R ++ + G K + +R R LR +
Sbjct: 58 HSRSRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRK--------Y 109
Query: 385 RTSGNIGRYLNHS----CTPNVF 403
R + I ++ H N++
Sbjct: 110 RAAKKIDKHQYHEFYLGSKGNLY 132
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 3.7
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 250 DEYLAELDFIETVERYKEAYESDVPEEDMVEDDEAENENSDEESPNSNSNEDNSQDKAIL 309
++ +A + E R KEA E E ++ E + + +E K L
Sbjct: 12 EKEMASMK--EEFTRLKEALEK---SEARRKELEEKMVSLLQE-------------KNDL 53
Query: 310 NSDDETENSSNADSDHIRSRLRKRKRKQKADKKEGKRK---TSSLLMTLQANQKKKTKRL 366
+ E + AD++ +L K K + +A KE ++ + L A ++K
Sbjct: 54 QLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113
Query: 367 RSLRE 371
L+
Sbjct: 114 SELKR 118
>2ys0_A Ectonucleotide pyrophosphatase/phosphodiesterase family member 1;
E-NPP 1, phosphodiesterase I/nucleotide pyrophosphatase
1; NMR {Homo sapiens}
Length = 56
Score = 26.4 bits (58), Expect = 3.8
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 128 CDCTDDCRDRNNC 140
C C+DDC+D+ +C
Sbjct: 25 CACSDDCKDQGDC 37
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 28.1 bits (62), Expect = 4.1
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKR 365
+ LR+ K + K K E K K + + + + K +
Sbjct: 107 AREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQ 147
>3lwc_A Uncharacterized protein; structural genomics, unknown function,
joint center for STRU genomics, JCSG, protein structure
initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Length = 119
Score = 27.3 bits (60), Expect = 4.9
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 401 NVFVQNVFVDTHDPRFPWVSFFALKFIEAGSELTWDYAYD 440
++ V N+ + H + + G LT A D
Sbjct: 25 DISVGNLVDERHGGPIT-IGYGRY---APGQSLTETMAVD 60
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 28.1 bits (62), Expect = 5.3
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDA 384
H +SR R + ++ + G K +Q +RLR LR +
Sbjct: 58 HSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAK--------Y 109
Query: 385 RTSGNIGRYLNHS 397
R +G I ++L H
Sbjct: 110 RDAGKIDKHLYHV 122
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 28.4 bits (62), Expect = 6.2
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 128 CDCTDDCRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLC 185
C C++DC R +C + W + ++ + IF +
Sbjct: 82 CHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDGFR 139
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.9 bits (63), Expect = 6.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 234 HLLTDSD-ANEEGKNYGDEYLAEL-DFIETVERYKEAYESDVPEEDMVEDDEAENENSDE 291
LL D E+ KNYG EY A++ + R KE + + ++E E E ++
Sbjct: 10 KLLARPDLTPEQMKNYGMEY-AKIEEIENITNRIKET-QEFIELLREEGENELEIEKYEK 67
Query: 292 E 292
E
Sbjct: 68 E 68
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 28.2 bits (63), Expect = 7.0
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 247 NYGDEYLAELDFIE-------TVERYKEAYESDVPEEDMVEDDEAENE 287
Y E + E++F E V Y++ ++ E+ E++E E+E
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDE 444
>1j8i_A Lymphotactin; chemokine, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1
PDB: 1j9o_A 2jp1_A 2nyz_D 2hdm_A
Length = 93
Score = 26.4 bits (58), Expect = 7.2
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 84 GRENVPIS-CVNYIDTDVPKT--VDYMTERKPKEGVTINTNKEFLVCCD 129
G E CV+ +P + Y V T + VC D
Sbjct: 2 GSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIFITKRGLKVCAD 50
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 27.8 bits (61), Expect = 7.6
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 328 SRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDARTS 387
+ +K R +K +K + + ++ + + + + + E + + R +
Sbjct: 8 NVQKKLARDEKL-RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 388 GNIGRYLNHSCTPNVFV 404
G + + F
Sbjct: 67 RKTGAFYVPAEAKVAFA 83
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 27.9 bits (63), Expect = 8.0
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 217 RCLNDIPQGTFICIYAGHL--LTDSDANEEGKNYGDEYLAELDF---IETVERYKEAYES 271
R L+ + GT +G L S + GK+ D Y DF ET +R Y S
Sbjct: 694 RALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMAADYAS 753
Query: 272 D 272
D
Sbjct: 754 D 754
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 26.9 bits (59), Expect = 10.0
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKR 365
+R K +KA + K ++ +A K+K +
Sbjct: 104 QREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVK 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,014,888
Number of extensions: 414375
Number of successful extensions: 1420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 114
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)