RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8081
(463 letters)
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 127 bits (319), Expect = 4e-34
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 11/212 (5%)
Query: 87 NVPISCVNYIDTD-VPKTVDYMTERKPKEGVTINTNKEFLVCCDCTDDCR-DRNNCACWQ 144
+PIS VN D + ++ + V + ++ F V C C D + C C
Sbjct: 1 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA-DQSFRVGCSCASDEECMYSTCQCLD 59
Query: 145 LTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSG--------IFECNDLCKCKHTCHNRVV 196
S + + K Y ++ + ++ I+EC+ C C C NRVV
Sbjct: 60 EMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVV 119
Query: 197 QFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDEYLAEL 256
+ LQ+F+T+ +GWG++C +I +G F+ Y G ++T +A+ ++
Sbjct: 120 ERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDV 179
Query: 257 DFIETVERYKEAYESDVPEEDMVEDDEAENEN 288
+ + +E D
Sbjct: 180 YLFALDKFSDPDSLDPLLAGQPLEVDGEYMSG 211
Score = 67.7 bits (164), Expect = 3e-13
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
+D R++NHSC PN+ + D D ++ FA+K I G+
Sbjct: 194 DPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGT 253
Query: 432 ELTWDYAYDIGSVPD---------KVVYCYC 453
ELT+DY + + ++ C C
Sbjct: 254 ELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 112 bits (281), Expect = 7e-29
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 80 DMSNGRENVPISCVNYIDTDVPKTVD--YMTERKPKEGVTINTNKEFLVCCDCTD----D 133
E ++ VN +D + ++D ++++ + +GV I + F C+C+ D
Sbjct: 19 KKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGV-IPPDPNFQSGCNCSSLGGCD 77
Query: 134 CRDRNNCACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHN 193
+ + C C EP F R+ + I+ECN C C C N
Sbjct: 78 LNNPSRCECLDDLD----------EPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPN 127
Query: 194 RVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNYGDEY 252
RVVQ L++FKT+ KGWG+R L P GTFI Y G ++T ++A + KNY D+
Sbjct: 128 RVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDG 186
Score = 76.8 bits (188), Expect = 2e-16
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 372 YFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEAGS 431
+D + Y +DA+ G++ R+ NHSC+PN+ + + + ++FFA+K I+
Sbjct: 194 DMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLE 253
Query: 432 ELTWDYAYDIGSVP 445
ELT+DYA P
Sbjct: 254 ELTFDYAGAKDFSP 267
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 63.2 bits (153), Expect = 2e-12
Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 361 KKTKRLRSLREYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVS 420
L E + Y ++ ++G NHS TPN P
Sbjct: 69 LNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPI---KC 125
Query: 421 FFALKFIEAGSELTWDYAYDIGSVPDKVVYCYCGSSECR 459
L+ +EA ELT Y YD E
Sbjct: 126 IRTLRAVEADEELTVAYGYDHSP-------PGKSGPEAP 157
Score = 48.2 bits (114), Expect = 3e-07
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 180 ECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDS 239
+ C + + + + G GL + T + Y G +T
Sbjct: 2 KSTSSCISTNALLPDPYESERV-YVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQ 60
Query: 240 DANEEGKNYGDEYLAELD 257
+ + + LD
Sbjct: 61 EVDSRDWAL-NGNTLSLD 77
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 47.1 bits (111), Expect = 3e-07
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 370 REYFGEDENVYIMDARTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPWVSFFALKFIEA 429
+ + + G NHS PN + + F +K I
Sbjct: 44 GTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHE------LTAGLKRMRIFTIKPIAI 97
Query: 430 GSELTWDYAYD 440
G E+T Y D
Sbjct: 98 GEEITISYGDD 108
Score = 38.2 bits (88), Expect = 4e-04
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 202 QKLQLFKTEMKGWGLRCLNDIPQGTFICIYAGHLLTDSDANEEGKNY 248
++ + K+ + G+G+ +G + + + D ++Y
Sbjct: 4 DRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDY 50
>d1aola_ b.20.1.1 (A:) F-MuLV receptor-binding domain {Friend murine
leukemia virus [TaxId: 11795]}
Length = 228
Score = 30.8 bits (69), Expect = 0.28
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 140 CACWQLTIKGSRDLWNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHNRVVQFP 199
CA W G W S D++ N V CK C+ +QF
Sbjct: 133 CASWGCETTGRVY-WKPSSSWDYITVDNNLTTSQAVQV-------CKDNKWCNPLAIQFT 184
Query: 200 MLQKLQLFKTEMKGWGLR 217
K T WGLR
Sbjct: 185 NAGKQVTSWTTGHYWGLR 202
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.9 bits (62), Expect = 0.64
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 7 KKCIMYTAPCGRTLRTSDQLVLYL 30
K + P G+ R+ +L+ Y
Sbjct: 43 KYDVYLINPQGKAFRSKVELIAYF 66
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 28.8 bits (63), Expect = 1.3
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 325 HIRSRLRKRKRKQKADKKEGKRKTSSLLMTLQANQKKKTKRLRSLREYFGEDENVYIMDA 384
+ K K + + +++ L + + + +
Sbjct: 123 QLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNEN 182
Query: 385 RTSGNIGRYLNHSCTPNVFVQNVFVDTHDPRFPW---VSFFALKFIEAGSELTWDY 437
+ +NHS V F W S + ++AG ++ Y
Sbjct: 183 LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 57 FEYDHFVDCLREFVIENANITIKDMSNGRE 86
E D F+ C+RE V E A + I DM++
Sbjct: 29 MESDKFI-CIREKVGEQAQVVIIDMNDPSN 57
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Haemophilus influenzae [TaxId: 727]}
Length = 107
Score = 26.7 bits (59), Expect = 2.4
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 324 DHIRSRLRKRKRKQKADKKEGKRK 347
+ + +L K + K ++ + + + K
Sbjct: 79 EKLERQLNKLQHKSESRRADERLK 102
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 25.9 bits (57), Expect = 2.8
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 7 KKCIMYTAPCGRTLRTSDQLVLYLFITKAKWTIDMFEY 44
+ Y +P G +R+ +L YL + +F++
Sbjct: 30 RSDTYYQSPTGDRIRSKVELTRYL---GPACDLTLFDF 64
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 27.6 bits (61), Expect = 3.4
Identities = 6/37 (16%), Positives = 8/37 (21%), Gaps = 3/37 (8%)
Query: 117 TINTNKEFLVCCDCTDD---CRDRNNCACWQLTIKGS 150
F V +DD R C +
Sbjct: 121 EQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAG 157
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 26.6 bits (59), Expect = 4.3
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 325 HIRSRLRKRK--RKQKADKKEGKRK-TSSLLMTLQANQKKKTKRLRS-LREYFGEDENVY 380
+ R R R+R+ R K G RK + + + + + + R+ LRE
Sbjct: 57 NSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLREL-------- 108
Query: 381 IMDARTSGNIGRYLNHS 397
R G +
Sbjct: 109 ----RDEGTLSSSQYRD 121
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 25.6 bits (56), Expect = 6.6
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 324 DHIRSRLRKRKRKQKADKKEGKRKTSSL 351
+ + +L K + K +A + K ++
Sbjct: 78 NKLERQLNKLQHKGEARRAATSVKDANF 105
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 23.5 bits (51), Expect = 8.8
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 180 ECNDLCKCKHTCHNRV 195
EC D C C N
Sbjct: 3 ECQDPDTCSQLCVNLE 18
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 269
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 426 FIEAGSELTWDYAYDIGSVPDKVVYCYCGSSE 457
FI+A L DYA +G D ++ + E
Sbjct: 93 FIDAEHALDPDYAKKLGVDTDSLLVSQPDTGE 124
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
{Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 26.3 bits (56), Expect = 9.7
Identities = 24/223 (10%), Positives = 50/223 (22%), Gaps = 4/223 (1%)
Query: 37 WTIDMFEYDHFVSSKWTIDMFEYDHFVDCLREFVIENANITIKDMSNGRENVPISCVNYI 96
S+ W +D E + + + +I N R + +
Sbjct: 142 PLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCK 201
Query: 97 DTDVPKTVDYMTE---RKPKEGVTINTNKEFLVCCDCTDDCRDRNNCACWQLTIKGSRDL 153
+V D + E +P E + I T + W++ +
Sbjct: 202 KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA 261
Query: 154 WNVSEPKDFVGYQNRRLPEHVVSGIFECNDLCKCKHTCHNRVVQFPMLQKLQLFKTEMKG 213
+ + K + +
Sbjct: 262 LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL 321
Query: 214 WGLRCLNDIPQGT-FICIYAGHLLTDSDANEEGKNYGDEYLAE 255
+ +PQG F+ L + D +E D +
Sbjct: 322 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTK 364
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0381 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,772,584
Number of extensions: 85128
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 29
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.9 bits)