BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8082
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 156/263 (59%), Gaps = 5/263 (1%)
Query: 21 GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFG 80
GSC+ + ++ LPK ET+ G+ F F GKGANQCV AA+L A +++ K+G D FG
Sbjct: 31 GSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFG 90
Query: 81 KSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140
Y+E L++ N I+T++ + +D TG S +++N+G + I+ GAN L+ D+ AA
Sbjct: 91 NDYIENLKQ-NDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAA 149
Query: 141 NLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200
N++ +AKV++ Q E T+L L+ ++ S K + NP+PA+ L+P L+D+ C
Sbjct: 150 NVISRAKVMVCQLEITPATSLEALT---MARRSGVKTLFNPAPAIADLDPQFYTLSDVFC 206
Query: 201 INEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260
NE EAEI+T + + + D + LL C VIITLG G V ++ P K I +
Sbjct: 207 CNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTE 266
Query: 261 HVEYPIESEGVGDCFVGALAYYF 283
V+ +++ G GD FVGALA+Y
Sbjct: 267 KVK-AVDTTGAGDSFVGALAFYL 288
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 16/273 (5%)
Query: 11 LKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVAL 70
+++ +VV+GS + I +Q+ P P ETV G H++ F GKGANQ VAA + A++A
Sbjct: 1 MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAF 60
Query: 71 ISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTY 130
I+ G+D G+S ++L N I+ + +++ +TGV ++ +G + I GAN
Sbjct: 61 IACTGDDSIGESVRQQLATDN-IDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAA 119
Query: 131 LSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNP 190
LS + ++A + + A ++ Q E+P E+ + H +++ + +NP+PA L
Sbjct: 120 LSPALVEAQRERIANASALLMQLESPLESVMAAAKIAH---QNKTIVALNPAPA-RELPD 175
Query: 191 IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
++ L DII NE EAE +T +++ N+ED A + L + TV+ITLG GV +
Sbjct: 176 ELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNG 235
Query: 251 N----PRLKTITVDHVEYPIESEGVGDCFVGAL 279
P + VD + GD F GAL
Sbjct: 236 EGQRVPGFRVQAVDTI-------AAGDTFNGAL 261
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 136/268 (50%), Gaps = 17/268 (6%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSG-KGANQCVAAAKLRASVALISKLG 75
+V++GS V+ V+ +P ET+ ++ F G KGANQ +A A+++A I+K+G
Sbjct: 5 VVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIG 64
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
D LE+ K I+T YI + TG ++ +G + + GAN ++ D
Sbjct: 65 TDGVADFILEDF-KVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPED 123
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
+ AK+ ++ A ++ Q E P +S ++ ++NP+PA N ++ ++
Sbjct: 124 VINAKDAIINADFVVAQLEVPIPA---IISAFEIAKAHGVTTVLNPAPAKALPNELLSLI 180
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255
DII NE EAE+++ +K+ NE+ + D L + TV+ITLG G +AT++ +
Sbjct: 181 -DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQ-- 237
Query: 256 TITVDHVEY----PIESEGVGDCFVGAL 279
H+E I++ GD F+GA
Sbjct: 238 -----HIEAYKVNAIDTTAAGDTFIGAF 260
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 119/276 (43%), Gaps = 25/276 (9%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL-RASVALISKLG 75
I VVGS ++ + V KP ET K GKGANQ V AK+ ++ +G
Sbjct: 17 ISVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIG 76
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
ND + +E K T YI + + TG + G ++ I PGAN L
Sbjct: 77 NDDYSDLLIENYEKLGI--TGYIRV--SLPTGRAFIEVDKTGQNRIIIFPGANAELKKEL 132
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
ID N L ++ +++ Q E P+ETTL C + + +I +P+PA +N +
Sbjct: 133 IDW--NTLSESDILLLQNEIPFETTLECAKRFN------GIVIFDPAPA-QGINEEIFQY 183
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN---- 251
D + NE+E E ++ + EK L++ VI+ LG GV+ ++
Sbjct: 184 LDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHF 243
Query: 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
P K VD + GD F GA A G+
Sbjct: 244 PTFKVKAVD-------TTAAGDVFNGAFAVALSEGK 272
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 118/278 (42%), Gaps = 20/278 (7%)
Query: 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVA 69
+L+ E ++V G+ +V+ + + +P + G H + F G N A++ +
Sbjct: 2 SLRKEPYLLVFGASVVDVFGFSKASYRPYNSTPG-HVKISFGGVCRNIAENXARVGVNTN 60
Query: 70 LISKLGNDKFGKSYLEELRK--YNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGA 127
S LGND+ GKS +E +K Y+ ++ +++ +T ++ G + I
Sbjct: 61 FXSILGNDEHGKSIVEHSKKIGYHXDDSX---VIEGGSTPTYLAILDENGEXVSAIADXK 117
Query: 128 NTYLSASD-IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY 186
+ +D ID+ + + A+ + + P E Y L + + + I++P A
Sbjct: 118 SIGAXNTDFIDSKREIFENAEYTVLDSDNP-EIXEYLLK----NFKDKTNFILDPVSA-E 171
Query: 187 PLNPIVMILADIICI--NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV 244
+ + ++ D I N EAEI+ I + +DL L + V I+L G+
Sbjct: 172 KASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGI 231
Query: 245 VYATRDNPRLKTITVDHVEYPIES-EGVGDCFVGALAY 281
Y N + + E +++ G GD FV L Y
Sbjct: 232 FY----NDGVSCGKIKATEVDVKNVTGAGDSFVAGLGY 265
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 44/252 (17%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
G AN V A+L I LG+D G+ +L ++ + N ++ ++ L D+T+ V
Sbjct: 51 GASANVGVCVARLGGECGFIGCLGDDDAGR-FLRQVFQDNGVDVTFLRLDADLTSAVLIV 109
Query: 112 VISNKGTHQTNII--PGANTYLSASDIDAAKNL-LLKAKVIMFQGETPWETTLYCLSKLH 168
++ G + PGA+TY+S D+ + I E L ++
Sbjct: 110 NLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMR 169
Query: 169 ---------VSLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKIN 215
V+L S+ + P + L I + AD +C +++
Sbjct: 170 EAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELC------------QLS 217
Query: 216 NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLKTITVDHVEYPIESE 269
D L D+ C+T II+LG G + T + PR+ +++
Sbjct: 218 GASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDV---------VDTT 268
Query: 270 GVGDCFVGALAY 281
G GD FVG L +
Sbjct: 269 GAGDAFVGGLLF 280
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 48/254 (18%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
G AN V A+L I LG+D G+ +L ++ + N ++ ++ L D+T+ V
Sbjct: 51 GASANVGVCVARLGGECGFIGCLGDDDAGR-FLRQVFQDNGVDVTFLRLDADLTSAVLIV 109
Query: 112 VISNKGTHQTNII--PGANTYLSASDIDAAKNLLL-----------KAKVIMFQG-ETPW 157
++ G + PGA+TY+S D+ + A+ +G
Sbjct: 110 NLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRXR 169
Query: 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMK 213
E Y L V+L S+ + P + L I + AD +C +
Sbjct: 170 EAGGYVL--FDVNLRSKXWGNTDEIPELIARSAALASICKVSADELC------------Q 215
Query: 214 INNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLKTITVDHVEYPIE 267
++ D L D+ C+T II+LG G + T + PR+ ++
Sbjct: 216 LSGASHWQDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDV---------VD 266
Query: 268 SEGVGDCFVGALAY 281
+ G GD FVG L +
Sbjct: 267 TTGAGDAFVGGLLF 280
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D++ +G L++F ++ P P V +FE+ +G N C+A + S +LI+++G
Sbjct: 3 DVIALGEPLIQFNSFN---PGPLRFVN--YFEKHVAGSELNFCIAVVRNHLSCSLIARVG 57
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGV 108
ND+FGK+ +E R I+T +I + + TG+
Sbjct: 58 NDEFGKNIIEYSRA-QGIDTSHIKVDNESFTGI 89
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 31/277 (11%)
Query: 12 KDEADIVVVGSCLVEFITY--VQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVA 69
K + D+V +G LV+ I+ V +L + E + + F G AN V ++L VA
Sbjct: 19 KGDLDVVSLGEILVDXISTEEVNSLSQSRE------YTRHFGGSPANIAVNLSRLGKKVA 72
Query: 70 LISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GA 127
LIS+LG D FG +YL ++ K I T I ++ T + V +K T + +P A
Sbjct: 73 LISRLGADAFG-NYLLDVLKGEQIITDGIQQDKERRTTI---VYVSKSTRTPDWLPYREA 128
Query: 128 NTYLSASDIDAAKNLLLKAKVIMFQ----GETPWETTLYCLSKLHVSLESRAKIIVNP-- 181
+ YL DI L+ ++KV P T + + + E + +P
Sbjct: 129 DXYLQEDDI--IFELIKRSKVFHLSTFILSRKPARDT--AIKAFNYAREQGKIVCFDPCY 184
Query: 182 SPAVYPL-NPIVMILADIICINEQEAEIITDMK-INNEEDLADCMEKLLDMKCNTVIITL 239
++P + ++ +II + + D + + + + +++ L++ VI+TL
Sbjct: 185 RKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPENYVKRYLELGVKAVILTL 244
Query: 240 GGSGVVYATRDN-PRLKTITVDHVEYPIESEGVGDCF 275
G GV+ + + R+ + D V+ G GD F
Sbjct: 245 GEEGVIASDGEEIIRIPAFSEDAVDVT----GAGDAF 277
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 46 FEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVT 105
FE+ G AN V ++L +LISK+GND FG+ +EEL K N ++T+ I +
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKEN-VDTRGIVKDEKKH 86
Query: 106 TGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMF 151
TG+ + KG + ++ Y + + D +++ +AK++ F
Sbjct: 87 TGIV--FVQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNF 130
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 46 FEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVT 105
FE+ G AN V ++L +LISK+GND FG+ +EEL K N ++T+ I +
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKEN-VDTRGIVKDEKKH 86
Query: 106 TGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMF 151
TG+ + KG + ++ Y + + D +++ +AK++ F
Sbjct: 87 TGIV--FVQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNF 130
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 114/298 (38%), Gaps = 42/298 (14%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+ VVGS ++ V LP+P ETV + GKGANQ VAAA+ A V G+
Sbjct: 22 VCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGD 81
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVT----TGVCSKVISNKGTHQTNIIPGANTYLS 132
D LR + L + VT +G V+ + + PGAN +L+
Sbjct: 82 DPAAAQLRAHLRA------NAVGLDRTVTVPGPSGTAIIVVDASAENTVLVAPGANAHLT 135
Query: 133 ASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIV 192
+ + V++ Q E P L+ + + A ++VN SPA + +
Sbjct: 136 P-----VPSAVANCDVLLTQLEIP---VATALAAARAAQSADAVVMVNASPAGQDRSSL- 186
Query: 193 MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252
Q+ I D+ I NE + D +ITLG G Y D
Sbjct: 187 -----------QDLAAIADVVIANEHEANDWPSPPTHF-----VITLGVRGARYVGADGV 230
Query: 253 -RLKTITVDHVEYPIESEGVGDCFVGALA--YYFKAGQKGGNLDSCRLRNGRGILKEL 307
+ TV P+++ G GD F G LA + G L + R G L L
Sbjct: 231 FEVPAPTV----TPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAGALATL 284
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase
(form 1) From Sulfolobus Tokodaii
Length = 311
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
A ++ +G L+EF P P V +FE+ +G AN CVA K +I+K+
Sbjct: 2 AKLITLGEILIEFNALS---PGPLRHVS--YFEKHVAGSEANYCVAFIKQGNECGIIAKV 56
Query: 75 GNDKFGKSYLEELR 88
G+D+FG + +E LR
Sbjct: 57 GDDEFGYNAIEWLR 70
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 30/205 (14%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+ V G+ V+ + +PK ++ G Q GKGANQ + ++ LI+ GN
Sbjct: 5 VYVTGNITVDETWSIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGN 64
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQD--VTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
D G ++++ + + LL D + +I N II T +A+
Sbjct: 65 DSNGAWIRQQIKN------EPLXLLPDGHFNQHSDTSIILNSADGDNAII----TTTAAA 114
Query: 135 DIDAAKNLL------LKAKVIMFQGETPWETTLYCLSKLHVSLE---SRAKIIV-NPSPA 184
D + + + +++ QG + L K + SR V NPSP
Sbjct: 115 DTFSLDEXIPHXADAVAGDILLQQGN-------FSLDKTRALFQYARSRGXTTVFNPSP- 166
Query: 185 VYPLNPIVMILADIICINEQEAEII 209
V P + L DI +NE EAE++
Sbjct: 167 VNPDFCHLWPLIDIAVVNESEAELL 191
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALIS 72
+E I+ VG +++ I+ V PK + ++ + G +N C + L A A +
Sbjct: 2 EEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMG 61
Query: 73 KLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLS 132
+ L++LR+Y S++ +Y + Q + + VI N+ + I+ +
Sbjct: 62 SMAPGHVADFVLDDLRRY-SVDLRYT-VFQTTGSVPIATVIINEASGSRTILYYDRSLPD 119
Query: 133 ASDIDAAKNLLLKAKVIMFQGETPWE 158
S D K L + K I +G E
Sbjct: 120 VSATDFEKVDLTQFKWIHIEGRNASE 145
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ +ADII N+ EAE++T KI+++E+ + M+ L M +TV+IT
Sbjct: 140 VVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVIT 186
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 148 VIMFQGETPWETTLYCLSKL-HVSLESRAKIIVNP----SPAVYPLNPIVMILADIICIN 202
+++ G P +++ ++ ++ AK++V+ + +V P +P+ I N
Sbjct: 128 IVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEKELAESVLPYHPL------FIKPN 181
Query: 203 EQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD------NPRLKT 256
+ E E++ + +N++ D+ L+D +VI++LGG G +Y ++ NP+ K
Sbjct: 182 KDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNPQGKV 241
Query: 257 I 257
+
Sbjct: 242 V 242
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT
Sbjct: 154 VVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVIT 200
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT
Sbjct: 155 VVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVIT 201
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT
Sbjct: 140 VVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVIT 186
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT
Sbjct: 140 VVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVIT 186
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
V+ LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT
Sbjct: 140 VVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVIT 186
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 19/259 (7%)
Query: 38 EETVKGYHFEQRFSGKGANQCVAAAKL----RASVALISKLGNDKFGKSYLEELRKYNSI 93
+E VK + E G N A + + +G DKFG+ L+ +
Sbjct: 50 DELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGE-ILKRKAAEAHV 108
Query: 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLL--KAKVIMF 151
+ Y + + TG C+ I+ + AN Y +D KN +L KA+V
Sbjct: 109 DAHY-YEQNEQPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYI 167
Query: 152 QGETPWETTLYCLSKLHVSLESRAKIIVNPS-PAVYPLNP----IVMILADIICINEQEA 206
G + L H + E+ +N S P + VM DI+ NE EA
Sbjct: 168 AGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEA 227
Query: 207 EIITDMKINNEEDLAD------CMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260
+ +D+ + + K+ + VI T G + AT +
Sbjct: 228 ATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQ 287
Query: 261 HVEYPIESEGVGDCFVGAL 279
+ I++ G GD FVG
Sbjct: 288 DQKEIIDTNGAGDAFVGGF 306
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
LA I +N+ EA+++ D +E+++A + +IIT G G RD
Sbjct: 185 LATYIAVNDYEAKLVCDKTGWSEDEIAS--------RVQALIITRGEHGATIRHRDG--T 234
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ I E I+ G GD F G L Y + G
Sbjct: 235 EQIPAVRAERVIDPTGCGDAFRGGLLYGIEHG 266
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
LA I +N+ EA+++ D +E+++A + +IIT G G RD
Sbjct: 193 LATYIAVNDYEAKLVCDKTGWSEDEIAS--------RVQALIITRGEHGATIRHRDG--T 242
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ I E I+ G GD F G L Y + G
Sbjct: 243 EQIPAVRAERVIDPTGCGDAFRGGLLYGIEHG 274
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 33/243 (13%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
I+V+G ++ ++T P + G E+ G G N ++L V +I+ G
Sbjct: 6 ILVLGGAHIDRRGMIETETAPGASNPGSWMEE-AGGGGFNAARNLSRLGFEVRIIAPRGG 64
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D G+ E R+ +T + +L D T + ++ G N ++ +D+
Sbjct: 65 DVTGEVVAEAARQAGVEDTPFTFL--DRRTPSYTAILERDG----------NLVIALADM 112
Query: 137 D-------------AAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPS 182
D A + ++ + ++ P E TL L + + E A I ++P+
Sbjct: 113 DLYKLFTPRRLKVRAVREAIIASDFLLCDANLP-EDTLTALGLIARACEKPLAAIAISPA 171
Query: 183 PAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS 242
AV + I DI+ +NE EA +T N D + + K + ++T G S
Sbjct: 172 KAVKLKAALGDI--DILFMNEAEARALTGETAENVRDWPNILRK---AGLSGGVVTRGAS 226
Query: 243 GVV 245
VV
Sbjct: 227 EVV 229
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 2/144 (1%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+ I+ VG +++ I+ V PK + ++ + G +N C + L A A
Sbjct: 18 SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFXGSX 77
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
L++LR+Y S++ +Y + Q + + VI N+ + I+ + S
Sbjct: 78 APGHVADFVLDDLRRY-SVDLRYT-VFQTTGSVPIATVIINEASGSRTILYYDRSLPDVS 135
Query: 135 DIDAAKNLLLKAKVIMFQGETPWE 158
D K L + K I +G E
Sbjct: 136 ATDFEKVDLTQFKWIHIEGRNASE 159
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 120/304 (39%), Gaps = 35/304 (11%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
++ VG+ +++ + V PK E V Y Q G ++ A + +L +G+
Sbjct: 32 VLCVGAAVLDTLFRVADXPKGEGKVLPYEVLQIAEGXASSAAYAVHRXGGRASLWGAVGD 91
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D+ G L +L + + I+T + + + + +I N+G + I+P + L
Sbjct: 92 DETGTRILRDLSE-SGIDTSGXTVAPGARSALSTIIIDNRG--ERLIVPFYDHRLHEK-- 146
Query: 137 DAAKNLLLKAKVIMFQG---ETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVM 193
K + +F + W +L + + + A+ + P+ + P+
Sbjct: 147 ---KRACTPEDIALFDAVLVDVRW-------PELALDVLTVARALGKPAILDGDVAPVET 196
Query: 194 I-----LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI-ITLGGSGVVYA 247
+ A I +E A +T + E + D + L T I +T G +G +
Sbjct: 197 LEGLAPAATHIVFSEPAATRLTGL-----ETVKDXLPVLHARYPQTFIAVTAGPAGCWWT 251
Query: 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKEL 307
D+P + T VE +++ GD F G A G + + + RL + + L
Sbjct: 252 EADDPTVHFQTTXQVEA-VDTLAAGDIFHGTFALAXAEGXQ--SRAAVRLSS---VAAAL 305
Query: 308 QCLV 311
+C V
Sbjct: 306 KCTV 309
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 86/239 (35%), Gaps = 45/239 (18%)
Query: 63 KLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQT- 121
+L +IS +GND FG + L + ++ + I +L TG N G
Sbjct: 49 RLGVPCGIISCVGNDGFGDINIHRLAA-DGVDIRGISVLPLEATGSAFVTYHNSGDRDFI 107
Query: 122 -NIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN 180
NI A LSA +D +N+L G ++L+ V +A IV
Sbjct: 108 FNIKNAACGKLSAQHVD--ENILKDCTHFHIXG-----SSLFSFHX--VDAVKKAVTIVK 158
Query: 181 PSPAVYPLNP-----------------IVMILADIICINEQEAEIITDMKINNEEDLADC 223
+ V +P V+ L DI +E E +++
Sbjct: 159 ANGGVISFDPNIRKEXLDIPEXRDALHFVLELTDIYXPSEGEVLLLSPHSTPER-----A 213
Query: 224 MEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE-YPIES---EGVGDCFVGA 278
+ L+ VI+ G G Y + + HVE YP+E G GDCF GA
Sbjct: 214 IAGFLEEGVKEVIVKRGNQGASYYSANEQF-------HVESYPVEEVDPTGAGDCFGGA 265
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 2/146 (1%)
Query: 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALIS 72
+E I+ VG +++ I+ V PK + ++ + G +N C + L A A +
Sbjct: 2 EEKQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMG 61
Query: 73 KLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLS 132
+ + + R+ ++ W + T C +I+N ++T I+ +
Sbjct: 62 SMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCC-IINNSNGNRT-IVLHDTSLPD 119
Query: 133 ASDIDAAKNLLLKAKVIMFQGETPWE 158
S D K L + K I +G E
Sbjct: 120 VSATDFEKVDLTQFKWIHIEGRNASE 145
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 103/266 (38%), Gaps = 25/266 (9%)
Query: 34 LPKPEETVKGYHFEQRFSGKGANQCVAAAKL--RASVALISK-LGNDKFGKSYLEELRKY 90
+P +E ++ Y E G N A + R A+ +G D++ + LEE
Sbjct: 63 MPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYAR-ILEERATS 121
Query: 91 NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS-DIDAAKNLLLKAKVI 149
N +N +Y TG C+ +++ + AN + D + L A+
Sbjct: 122 NGVNVQY-QRSATSPTGTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFF 180
Query: 150 MFQGETPWETTLYCLSKLHVSLESRAK---IIVNPS----PAVYPLN-PIVMILADIICI 201
G + T+ S L V+ E+ A ++N S P Y N + D++
Sbjct: 181 YVSG---FFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFG 237
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDM------KCNTVIITLGGSGV--VYATRDNPR 253
NE EA + EDL + +++ + + VIIT G V + A DN R
Sbjct: 238 NETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVR 297
Query: 254 LKTITVDHVEYPIESEGVGDCFVGAL 279
+ E +++ G GD FVG
Sbjct: 298 EFPVQKLAPEQMVDTNGAGDAFVGGF 323
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 96/241 (39%), Gaps = 32/241 (13%)
Query: 68 VALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVT---TGVCSKVISNKGTHQTNII 124
V + + +D++GK L+E ++ I + ++ T +G C+ I+ G +T +
Sbjct: 86 VTYVGCIADDRYGK-VLKEAAEHEGI----VMAVEHTTKAGSGACAVCIT--GKERTLVA 138
Query: 125 P-GANTYLSASDID--AAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNP 181
GA +LS+ + A + ++++ F G T + L + E ++N
Sbjct: 139 DLGAANHLSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINL 198
Query: 182 S-PAVYPLNPI----VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236
S P + V+ DII N EA+ +M + DC+E++ + V
Sbjct: 199 SAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWD----TDCVEEIARRAVSEVP 254
Query: 237 ITLGGSGVVYATRDNPRLKTITVDHVEYP----------IESEGVGDCFVGALAYYFKAG 286
T VV TRD T D VE I+ G GD F+G + G
Sbjct: 255 YTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVG 314
Query: 287 Q 287
+
Sbjct: 315 K 315
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
28
Length = 111
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8 VANLKDEADIVVVGSCLVEF--ITYVQTLPKPE-ETVKGYHFEQRFSGKGANQCVAAAKL 64
+ NL +++ +G L +F + YV+ + P+ E KG F Q + + A +C+AAA L
Sbjct: 20 IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASL 79
Query: 65 RA 66
A
Sbjct: 80 EA 81
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 2/144 (1%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+ I+ VG +++ I+ V PK + ++ + G +N C + L A A + +
Sbjct: 19 SQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSM 78
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
+ + R+ ++ W + T C +I+N ++T I+ + S
Sbjct: 79 APGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCC-IINNSNGNRT-IVLHDTSLPDVS 136
Query: 135 DIDAAKNLLLKAKVIMFQGETPWE 158
D K L + K I +G E
Sbjct: 137 ATDFEKVDLTQFKWIHIEGRNASE 160
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 ALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVC 109
AL+S++GND FG+ L EL + ++ +Y+ Q T V
Sbjct: 59 ALLSRVGNDPFGEYLLAELERLG-VDNQYVATDQTFKTPVT 98
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-LGGSGVVYATRDNPRL 254
+DII N E EI+ + +NN E+ +L+ V++ L +G +RD +
Sbjct: 140 SDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGY---SRDRFEM 196
Query: 255 KTITVD---HVEYPI------ESEGVGDCFVGAL 279
+T D H+ P+ + GVGD G L
Sbjct: 197 LLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLL 230
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVT-TGVCS 110
G+GA V AK RA I ++ ++ K+++ ELR+ + +N I L VC
Sbjct: 17 GRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCL 76
Query: 111 KVISNKGTHQTNIIPGAN 128
+ +G N++ GA
Sbjct: 77 VMEYAEGGSLYNVLHGAE 94
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVT-TGVCS 110
G+GA V AK RA I ++ ++ K+++ ELR+ + +N I L VC
Sbjct: 18 GRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCL 77
Query: 111 KVISNKGTHQTNIIPGAN 128
+ +G N++ GA
Sbjct: 78 VMEYAEGGSLYNVLHGAE 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,385,927
Number of Sequences: 62578
Number of extensions: 471309
Number of successful extensions: 1023
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 52
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)