Query psy8082
Match_columns 379
No_of_seqs 169 out of 1732
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:56:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11142 ribokinase; Provision 100.0 4.8E-47 1E-51 362.7 35.6 298 14-331 2-300 (306)
2 PTZ00292 ribokinase; Provision 100.0 8.1E-47 1.8E-51 364.7 35.8 303 12-332 13-322 (326)
3 cd01174 ribokinase Ribokinase 100.0 4.5E-46 9.7E-51 353.5 35.3 291 16-326 1-292 (292)
4 TIGR02152 D_ribokin_bact ribok 100.0 1.6E-43 3.5E-48 336.3 33.8 291 21-330 1-292 (293)
5 PRK09850 pseudouridine kinase; 100.0 3.4E-43 7.4E-48 337.6 34.0 303 12-336 2-307 (313)
6 KOG2855|consensus 100.0 1.9E-44 4E-49 336.2 24.1 305 10-336 5-326 (330)
7 PLN02341 pfkB-type carbohydrat 100.0 2.7E-43 5.8E-48 354.7 31.0 311 2-339 61-411 (470)
8 cd01945 ribokinase_group_B Rib 100.0 6.1E-43 1.3E-47 330.8 30.5 283 16-326 1-284 (284)
9 cd01168 adenosine_kinase Adeno 100.0 2.3E-43 5E-48 338.5 26.5 283 15-322 2-311 (312)
10 PLN02813 pfkB-type carbohydrat 100.0 6.5E-43 1.4E-47 347.4 29.7 299 13-337 68-407 (426)
11 PF00294 PfkB: pfkB family car 100.0 1.8E-43 3.9E-48 336.5 23.4 292 14-327 1-301 (301)
12 PTZ00247 adenosine kinase; Pro 100.0 1.2E-42 2.6E-47 338.2 27.9 291 11-322 2-336 (345)
13 PLN02323 probable fructokinase 100.0 1E-41 2.2E-46 329.8 32.3 297 10-336 6-326 (330)
14 PRK09954 putative kinase; Prov 100.0 3.2E-41 6.9E-46 330.3 34.7 285 14-321 57-346 (362)
15 cd01944 YegV_kinase_like YegV- 100.0 2.4E-41 5.2E-46 320.9 30.8 278 16-319 1-289 (289)
16 PLN02967 kinase 100.0 3.1E-41 6.7E-46 340.9 31.2 299 14-331 196-542 (581)
17 COG0524 RbsK Sugar kinases, ri 100.0 6.4E-41 1.4E-45 321.4 30.8 296 16-334 1-307 (311)
18 PRK15074 inosine/guanosine kin 100.0 7.9E-41 1.7E-45 330.9 29.5 303 8-336 27-432 (434)
19 PLN02543 pfkB-type carbohydrat 100.0 1.3E-40 2.7E-45 333.5 31.0 299 14-331 125-484 (496)
20 cd01942 ribokinase_group_A Rib 100.0 1.1E-40 2.4E-45 314.4 28.3 269 16-320 1-278 (279)
21 PRK09434 aminoimidazole ribosi 100.0 1.7E-40 3.7E-45 317.4 29.2 277 14-329 2-302 (304)
22 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.7E-40 3.7E-45 315.3 27.6 276 16-320 1-293 (294)
23 TIGR03828 pfkB 1-phosphofructo 100.0 6.9E-40 1.5E-44 312.9 31.5 288 19-336 4-300 (304)
24 TIGR02198 rfaE_dom_I rfaE bifu 100.0 1.7E-39 3.7E-44 312.0 34.3 293 12-331 5-311 (315)
25 cd01939 Ketohexokinase Ketohex 100.0 7.3E-40 1.6E-44 311.1 30.3 277 16-320 1-289 (290)
26 cd01941 YeiC_kinase_like YeiC- 100.0 9.8E-40 2.1E-44 309.4 30.6 281 17-316 2-287 (288)
27 cd01172 RfaE_like RfaE encodes 100.0 1.5E-39 3.2E-44 310.6 31.2 285 16-325 1-299 (304)
28 cd01167 bac_FRK Fructokinases 100.0 7.4E-40 1.6E-44 311.2 25.5 271 16-320 1-294 (295)
29 PLN02379 pfkB-type carbohydrat 100.0 8.4E-39 1.8E-43 312.9 29.9 292 13-329 18-350 (367)
30 cd01164 FruK_PfkB_like 1-phosp 100.0 1.8E-38 3.9E-43 301.3 30.5 276 17-320 3-288 (289)
31 cd01947 Guanosine_kinase_like 100.0 8.9E-39 1.9E-43 299.6 27.6 263 16-321 1-265 (265)
32 TIGR03168 1-PFK hexose kinase, 100.0 5E-38 1.1E-42 300.2 31.9 285 22-336 7-300 (303)
33 PRK09513 fruK 1-phosphofructok 100.0 8E-38 1.7E-42 300.2 33.1 290 17-336 5-304 (312)
34 cd01940 Fructoselysine_kinase_ 100.0 9.5E-39 2.1E-43 299.1 25.9 259 16-320 1-263 (264)
35 PRK10294 6-phosphofructokinase 100.0 1.6E-37 3.5E-42 297.7 32.8 291 16-336 3-305 (309)
36 cd01943 MAK32 MAK32 kinase. M 100.0 4.3E-39 9.3E-44 311.0 19.2 274 16-320 1-304 (328)
37 TIGR01231 lacC tagatose-6-phos 100.0 3.6E-37 7.8E-42 295.3 30.1 277 19-321 4-290 (309)
38 PLN02548 adenosine kinase 100.0 8.2E-38 1.8E-42 302.7 25.0 270 33-322 34-325 (332)
39 PRK13508 tagatose-6-phosphate 100.0 5.9E-37 1.3E-41 293.8 30.5 278 17-321 3-290 (309)
40 PLN02630 pfkB-type carbohydrat 100.0 1.8E-37 4E-42 299.1 26.7 300 12-374 9-334 (335)
41 PRK11316 bifunctional heptose 100.0 2.8E-36 6.2E-41 305.3 33.5 296 13-336 9-313 (473)
42 PRK09813 fructoselysine 6-kina 100.0 8.2E-37 1.8E-41 285.7 26.8 254 15-320 1-259 (260)
43 COG1105 FruK Fructose-1-phosph 100.0 1.8E-34 3.8E-39 269.4 29.6 281 21-330 7-297 (310)
44 cd01937 ribokinase_group_D Rib 100.0 9.6E-34 2.1E-38 263.9 26.1 247 16-316 1-254 (254)
45 cd01946 ribokinase_group_C Rib 100.0 7.9E-34 1.7E-38 267.9 23.8 263 16-321 1-276 (277)
46 COG2870 RfaE ADP-heptose synth 100.0 4.6E-33 9.9E-38 261.8 25.0 294 13-336 9-313 (467)
47 KOG2854|consensus 100.0 2.4E-31 5.1E-36 245.5 19.4 288 16-321 8-335 (343)
48 KOG2947|consensus 100.0 4.2E-29 9.1E-34 220.2 20.6 285 13-319 3-297 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 7.5E-29 1.6E-33 221.3 21.6 190 16-284 1-196 (196)
50 PRK12412 pyridoxal kinase; Rev 99.8 1E-17 2.3E-22 157.4 22.7 217 70-317 4-246 (268)
51 PRK12413 phosphomethylpyrimidi 99.8 5.4E-17 1.2E-21 151.3 22.6 217 68-317 4-242 (253)
52 TIGR00097 HMP-P_kinase phospho 99.8 2.4E-17 5.2E-22 153.8 18.5 155 145-317 67-240 (254)
53 cd01173 pyridoxal_pyridoxamine 99.8 1.4E-17 3E-22 155.3 16.9 171 128-316 49-250 (254)
54 cd01169 HMPP_kinase 4-amino-5- 99.8 3.5E-17 7.5E-22 151.4 18.6 154 145-316 68-240 (242)
55 TIGR00687 pyridox_kin pyridoxa 99.7 3.6E-17 7.8E-22 155.2 16.8 166 129-312 52-250 (286)
56 PRK07105 pyridoxamine kinase; 99.7 9.3E-17 2E-21 152.2 19.0 162 145-320 75-258 (284)
57 PRK06427 bifunctional hydroxy- 99.7 1.1E-16 2.4E-21 150.2 18.6 155 145-317 73-248 (266)
58 PRK05756 pyridoxamine kinase; 99.7 7.9E-17 1.7E-21 152.9 17.4 170 129-317 52-255 (286)
59 PRK08573 phosphomethylpyrimidi 99.7 2.8E-16 6.1E-21 157.8 21.0 218 69-316 4-243 (448)
60 PRK08176 pdxK pyridoxal-pyrido 99.7 2E-16 4.4E-21 149.6 18.7 158 143-316 86-265 (281)
61 PRK12616 pyridoxal kinase; Rev 99.7 5.4E-16 1.2E-20 145.9 16.7 155 145-317 74-249 (270)
62 KOG3009|consensus 99.7 1.3E-15 2.9E-20 145.7 16.2 239 17-317 343-600 (614)
63 PTZ00347 phosphomethylpyrimidi 99.6 1.5E-13 3.2E-18 140.4 19.3 170 130-317 281-478 (504)
64 PTZ00344 pyridoxal kinase; Pro 99.5 1.8E-13 3.9E-18 130.5 17.0 174 128-316 54-257 (296)
65 PLN02898 HMP-P kinase/thiamin- 99.5 2.4E-13 5.2E-18 138.8 17.9 155 145-317 78-253 (502)
66 cd01171 YXKO-related B.subtili 99.5 2.3E-13 4.9E-18 126.9 15.3 156 142-317 74-235 (254)
67 PF08543 Phos_pyr_kin: Phospho 99.5 2.8E-13 6.1E-18 125.7 15.2 154 145-316 60-233 (246)
68 COG0351 ThiD Hydroxymethylpyri 99.5 6.1E-12 1.3E-16 115.5 19.0 216 68-316 4-244 (263)
69 PRK09517 multifunctional thiam 99.4 6.1E-12 1.3E-16 133.9 20.7 219 68-317 242-484 (755)
70 PRK14713 multifunctional hydro 99.4 4.2E-12 9.1E-17 130.3 17.7 219 65-315 27-270 (530)
71 cd01170 THZ_kinase 4-methyl-5- 99.4 3E-12 6.6E-17 118.4 14.6 148 140-298 44-211 (242)
72 PLN02978 pyridoxal kinase 99.4 4.1E-11 8.9E-16 114.8 18.6 154 146-316 87-266 (308)
73 TIGR00196 yjeF_cterm yjeF C-te 99.3 4E-11 8.7E-16 113.0 16.9 147 141-298 88-236 (272)
74 COG2240 PdxK Pyridoxal/pyridox 99.3 1.4E-10 3E-15 107.2 16.3 161 129-298 51-239 (281)
75 PTZ00493 phosphomethylpyrimidi 99.1 1.6E-08 3.4E-13 96.6 22.7 219 68-316 5-284 (321)
76 PRK09355 hydroxyethylthiazole 99.0 2.1E-08 4.7E-13 93.9 16.3 157 128-298 40-215 (263)
77 TIGR00694 thiM hydroxyethylthi 98.8 2.3E-07 4.9E-12 86.3 16.1 156 129-298 36-210 (249)
78 KOG2599|consensus 98.7 7.6E-07 1.6E-11 81.1 14.7 164 129-298 60-252 (308)
79 KOG2598|consensus 98.6 5.9E-07 1.3E-11 86.6 12.5 170 130-317 74-283 (523)
80 PRK14039 ADP-dependent glucoki 97.9 0.0011 2.3E-08 66.1 19.3 188 45-238 85-330 (453)
81 PRK10565 putative carbohydrate 97.9 0.00041 8.9E-09 71.0 15.6 144 143-298 318-464 (508)
82 PF02110 HK: Hydroxyethylthiaz 97.8 0.0009 2E-08 61.7 15.3 156 129-298 36-210 (246)
83 PRK03979 ADP-specific phosphof 97.8 0.001 2.2E-08 66.4 16.3 186 47-238 98-345 (463)
84 TIGR02045 P_fruct_ADP ADP-spec 97.7 0.0033 7.3E-08 62.5 18.9 184 48-239 86-332 (446)
85 PRK14038 ADP-dependent glucoki 97.5 0.0077 1.7E-07 60.0 17.0 185 47-239 106-342 (453)
86 COG2145 ThiM Hydroxyethylthiaz 97.4 0.005 1.1E-07 56.5 14.0 158 127-298 40-217 (265)
87 PF01256 Carb_kinase: Carbohyd 97.4 0.0013 2.8E-08 60.9 10.1 145 141-298 63-211 (242)
88 PF04587 ADP_PFK_GK: ADP-speci 96.8 0.011 2.4E-07 59.5 11.5 182 48-238 92-333 (444)
89 KOG3974|consensus 96.8 0.036 7.8E-07 50.8 12.9 161 142-319 98-269 (306)
90 COG0063 Predicted sugar kinase 95.6 0.29 6.3E-06 46.3 13.3 145 143-298 99-249 (284)
91 cd01938 ADPGK_ADPPFK ADP-depen 94.4 1.1 2.5E-05 45.0 14.1 182 45-230 100-318 (445)
92 COG4809 Archaeal ADP-dependent 83.4 49 0.0011 32.7 16.0 104 132-238 212-347 (466)
93 PRK10076 pyruvate formate lyas 78.4 36 0.00079 30.7 11.3 99 129-233 17-129 (213)
94 COG0269 SgbH 3-hexulose-6-phos 74.4 18 0.00039 32.7 7.9 40 143-185 78-117 (217)
95 COG1180 PflA Pyruvate-formate 70.6 66 0.0014 30.0 11.3 100 130-235 68-176 (260)
96 COG1646 Predicted phosphate-bi 69.6 29 0.00063 31.7 8.2 72 130-211 28-106 (240)
97 PRK04169 geranylgeranylglycery 63.6 50 0.0011 30.3 8.7 76 126-211 15-96 (232)
98 TIGR00334 5S_RNA_mat_M5 ribonu 59.8 48 0.001 29.0 7.4 80 145-227 22-108 (174)
99 PRK06702 O-acetylhomoserine am 59.4 1.5E+02 0.0033 29.8 12.1 69 131-204 135-207 (432)
100 cd00757 ThiF_MoeB_HesA_family 55.7 1.4E+02 0.003 27.0 10.3 34 142-179 108-141 (228)
101 COG1159 Era GTPase [General fu 53.8 96 0.0021 29.5 8.9 106 65-178 3-118 (298)
102 PRK08134 O-acetylhomoserine am 47.2 2.3E+02 0.005 28.5 11.2 56 144-202 148-207 (433)
103 TIGR01768 GGGP-family geranylg 44.8 99 0.0021 28.2 7.3 71 131-211 15-91 (223)
104 PRK11557 putative DNA-binding 43.8 2.3E+02 0.005 26.2 10.1 105 130-246 112-217 (278)
105 PF13986 DUF4224: Domain of un 43.3 35 0.00076 22.9 3.2 32 200-236 2-33 (47)
106 TIGR02826 RNR_activ_nrdG3 anae 41.1 1.2E+02 0.0025 25.7 6.8 75 129-206 44-120 (147)
107 PRK05613 O-acetylhomoserine am 39.1 3.5E+02 0.0077 27.2 11.1 56 145-203 155-214 (437)
108 TIGR02495 NrdG2 anaerobic ribo 38.9 2.6E+02 0.0055 24.1 11.4 105 130-238 46-160 (191)
109 PF10087 DUF2325: Uncharacteri 38.7 71 0.0015 24.6 4.8 39 142-183 45-84 (97)
110 TIGR01769 GGGP geranylgeranylg 37.4 1E+02 0.0023 27.6 6.2 60 144-211 23-89 (205)
111 PHA00438 hypothetical protein 35.4 29 0.00064 25.8 1.9 20 266-285 44-63 (81)
112 cd05014 SIS_Kpsf KpsF-like pro 34.1 2.4E+02 0.0051 22.4 11.0 40 218-259 61-100 (128)
113 PRK08641 sdhA succinate dehydr 33.4 55 0.0012 34.4 4.4 23 51-73 12-34 (589)
114 PRK13018 cell division protein 32.5 2.2E+02 0.0048 28.2 8.2 30 48-78 34-64 (378)
115 PRK05690 molybdopterin biosynt 32.1 3.5E+02 0.0077 24.8 9.1 42 131-179 111-152 (245)
116 COG2248 Predicted hydrolase (m 31.9 3.7E+02 0.008 25.2 8.8 74 104-182 162-247 (304)
117 COG1737 RpiR Transcriptional r 31.2 1.8E+02 0.004 27.2 7.2 102 128-242 112-215 (281)
118 PF10911 DUF2717: Protein of u 30.9 38 0.00083 25.2 1.9 20 266-285 44-63 (77)
119 COG1618 Predicted nucleotide k 30.8 3.7E+02 0.0079 23.5 9.7 121 75-200 17-157 (179)
120 COG1053 SdhA Succinate dehydro 30.5 71 0.0015 33.4 4.6 25 51-75 15-39 (562)
121 PRK06197 short chain dehydroge 30.5 1.5E+02 0.0033 27.7 6.6 22 51-72 26-47 (306)
122 PRK08401 L-aspartate oxidase; 30.0 61 0.0013 32.9 4.0 23 51-73 10-32 (466)
123 PRK15482 transcriptional regul 29.7 2.4E+02 0.0053 26.3 7.8 106 129-246 118-224 (285)
124 cd02812 PcrB_like PcrB_like pr 29.6 2.5E+02 0.0053 25.6 7.4 72 131-211 12-90 (219)
125 PRK13397 3-deoxy-7-phosphohept 28.9 1.9E+02 0.004 26.9 6.6 82 157-243 65-162 (250)
126 COG0136 Asd Aspartate-semialde 28.5 5.6E+02 0.012 24.9 12.8 148 66-239 2-158 (334)
127 KOG4184|consensus 27.7 54 0.0012 31.9 2.8 68 144-212 237-318 (478)
128 PRK05968 hypothetical protein; 27.7 5.9E+02 0.013 25.0 12.4 38 143-183 145-186 (389)
129 TIGR00065 ftsZ cell division p 27.6 3.5E+02 0.0076 26.4 8.6 31 48-78 23-53 (349)
130 PRK07050 cystathionine beta-ly 27.1 6.2E+02 0.013 24.9 12.0 38 144-184 149-190 (394)
131 COG0075 Serine-pyruvate aminot 26.6 6.4E+02 0.014 25.0 13.0 131 51-212 64-217 (383)
132 PTZ00139 Succinate dehydrogena 26.3 82 0.0018 33.3 4.2 23 51-73 38-60 (617)
133 PRK06370 mercuric reductase; V 26.1 89 0.0019 31.5 4.4 20 53-72 16-35 (463)
134 PRK13396 3-deoxy-7-phosphohept 25.8 5.9E+02 0.013 24.9 9.7 80 158-242 152-247 (352)
135 PRK11145 pflA pyruvate formate 25.4 4.9E+02 0.011 23.5 8.9 81 147-233 72-163 (246)
136 PF04127 DFP: DNA / pantothena 25.2 1.5E+02 0.0034 26.0 5.2 146 67-241 19-169 (185)
137 TIGR02494 PFLE_PFLC glycyl-rad 24.7 4.7E+02 0.01 24.4 8.8 82 147-234 127-217 (295)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 24.6 1.3E+02 0.0028 26.3 4.7 57 143-202 75-133 (202)
139 PF01884 PcrB: PcrB family; I 24.5 2.5E+02 0.0055 25.7 6.5 62 130-200 19-80 (230)
140 PRK08328 hypothetical protein; 24.2 5E+02 0.011 23.5 8.5 42 131-179 107-148 (231)
141 PRK06481 fumarate reductase fl 24.2 1.1E+02 0.0025 31.3 4.8 25 49-73 68-92 (506)
142 COG0320 LipA Lipoate synthase 23.7 1.2E+02 0.0027 28.6 4.3 27 52-78 100-126 (306)
143 TIGR01745 asd_gamma aspartate- 23.4 7.2E+02 0.016 24.5 10.1 97 67-185 2-100 (366)
144 cd02201 FtsZ_type1 FtsZ is a G 23.3 4.2E+02 0.0091 25.2 8.2 29 49-78 7-36 (304)
145 TIGR03127 RuMP_HxlB 6-phospho 23.0 4.8E+02 0.01 22.2 8.4 97 129-243 13-111 (179)
146 PRK11337 DNA-binding transcrip 22.9 3.2E+02 0.0068 25.5 7.2 106 129-246 123-229 (292)
147 TIGR02355 moeB molybdopterin s 22.6 6E+02 0.013 23.2 9.4 43 130-179 102-144 (240)
148 PRK00278 trpC indole-3-glycero 22.5 2.1E+02 0.0046 26.6 5.8 70 131-206 121-191 (260)
149 cd05013 SIS_RpiR RpiR-like pro 22.5 2E+02 0.0044 22.8 5.2 28 218-245 74-101 (139)
150 cd02752 MopB_Formate-Dh-Na-lik 22.3 4.5E+02 0.0098 28.1 8.8 82 143-230 167-267 (649)
151 TIGR03128 RuMP_HxlA 3-hexulose 22.3 1.9E+02 0.0042 25.3 5.4 57 143-202 74-133 (206)
152 COG2321 Predicted metalloprote 21.9 1.8E+02 0.004 27.3 5.0 56 272-337 212-276 (295)
153 PLN02762 pyruvate kinase compl 21.6 2.3E+02 0.0049 29.3 6.2 70 136-208 259-350 (509)
154 PRK06115 dihydrolipoamide dehy 21.2 1.2E+02 0.0027 30.6 4.3 21 53-73 14-34 (466)
155 COG2117 Predicted subunit of t 21.1 3E+02 0.0065 23.9 5.8 49 49-98 7-57 (198)
156 PLN00128 Succinate dehydrogena 21.1 1.2E+02 0.0027 32.1 4.4 25 50-74 58-82 (635)
157 PF01118 Semialdhyde_dh: Semia 21.0 3.1E+02 0.0067 21.8 5.9 38 143-186 64-101 (121)
158 PRK06124 gluconate 5-dehydroge 20.9 3.3E+02 0.0072 24.4 6.8 37 51-89 21-57 (256)
159 PRK12409 D-amino acid dehydrog 20.8 1.3E+02 0.0028 29.6 4.3 20 53-72 12-31 (410)
160 PRK06598 aspartate-semialdehyd 20.8 8.2E+02 0.018 24.1 12.7 97 67-185 3-101 (369)
161 TIGR00762 DegV EDD domain prot 20.6 1.1E+02 0.0023 28.7 3.4 80 216-298 63-144 (275)
162 KOG3361|consensus 20.6 72 0.0016 26.5 1.9 29 267-298 85-114 (157)
163 PLN02461 Probable pyruvate kin 20.5 2.4E+02 0.0051 29.2 6.0 73 133-208 245-339 (511)
164 PRK07804 L-aspartate oxidase; 20.3 1.6E+02 0.0034 30.6 4.9 23 51-73 25-47 (541)
165 PRK08133 O-succinylhomoserine 20.2 8.3E+02 0.018 23.9 11.5 37 144-183 145-185 (390)
166 PF11469 Ribonucleas_3_2: Ribo 20.1 1.6E+02 0.0034 23.4 3.6 30 266-298 53-83 (120)
No 1
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=4.8e-47 Score=362.75 Aligned_cols=298 Identities=31% Similarity=0.454 Sum_probs=269.8
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++..++++|.++..+........+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~-~gV 80 (306)
T PRK11142 2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAK-DGI 80 (306)
T ss_pred CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHH-cCC
Confidence 4679999999999999999999999888888999999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccC
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES 173 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~ 173 (379)
+++++...++.+|+.+.+.++++|+|++..+.++...+++++++...+.++.++++|+++..+.+....+++.+ ++.
T Consensus 81 ~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~~ 157 (306)
T PRK11142 81 DTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADALLMQLETPLETVLAAAKIA---KQH 157 (306)
T ss_pred ChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHHH---HHc
Confidence 99999878888899999999989999988888888889998887655668999999999877778888999999 999
Q ss_pred CcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy8082 174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (379)
Q Consensus 174 ~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~ 253 (379)
+.++++|+++.. .....+++++|++++|++|++.+++....+.++..++++.+.+.+++.++||+|++|+++++++ +
T Consensus 158 g~~v~~d~~~~~-~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--~ 234 (306)
T PRK11142 158 GTKVILNPAPAR-ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENG--E 234 (306)
T ss_pred CCEEEEECCCCc-ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCC--c
Confidence 999999997532 2446789999999999999999999766565677788888888999999999999999998876 5
Q ss_pred eEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
.+++|+ ++++++|||||||+|+|||++++++ |+++++|+++ |+++| ++|++.|+.+++|+.+++.
T Consensus 235 ~~~~~~-~~v~vvDt~GAGDaF~Agfi~~l~~---g~~~~~al~~---------a~~~Aa~~~~~~G~~~~~~~~~~~~ 300 (306)
T PRK11142 235 GQRVPG-FRVQAVDTIAAGDTFNGALVTALLE---GKPLPEAIRF---------AHAAAAIAVTRKGAQPSIPWREEID 300 (306)
T ss_pred ceeccC-CCcccccCCCchhHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHcCCCcccccCCCHHHHH
Confidence 788998 8889999999999999999999999 9999999999 99999 9999999988889888763
No 2
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=8.1e-47 Score=364.68 Aligned_cols=303 Identities=32% Similarity=0.543 Sum_probs=271.5
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
.++++|+|+|.+++|++..++++|.+++.+....+...+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 13 ~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~-~ 91 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKR-N 91 (326)
T ss_pred CCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHH-c
Confidence 356789999999999999999999998888888889999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEc-CCCceeEEecCCcCCCCCHHHHHHHHhhccC-ccEEEEeCCCCHHHHHHHHHHhhh
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVIS-NKGTHQTNIIPGANTYLSASDIDAAKNLLLK-AKVIMFQGETPWETTLYCLSKLHV 169 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~-~~~v~~~~~~~~~~~~~~~~~a~~ 169 (379)
||++++++..++.+|++++++++ .+|++.++.+++++..+++++++.....+.. ++++++++..+.+...++++.+
T Consensus 92 GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a-- 169 (326)
T PTZ00292 92 GVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLDALKEA-- 169 (326)
T ss_pred CCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhhCCEEEECCCCCHHHHHHHHHHH--
Confidence 99999997777889999999998 7899998888888888999888765555777 9999998877878888999999
Q ss_pred hccCCcEEEEecCCCCC----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy8082 170 SLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (379)
Q Consensus 170 ~~~~~~~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~ 245 (379)
+++++++++|+++... +.+.++++++|++++|++|++.+++....+.++..++.+.+.+.+++.|+||+|++|++
T Consensus 170 -~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~ 248 (326)
T PTZ00292 170 -KERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANGCL 248 (326)
T ss_pred -HHcCCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCCCcEE
Confidence 8899999999985432 45678889999999999999999997665556677788888889999999999999999
Q ss_pred EEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCC
Q psy8082 246 YATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSE 324 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~ 324 (379)
++++++ ..+++|+ +++++||||||||+|+|||++++++ |+++++|+++ |+++| +++++.|+..++
T Consensus 249 ~~~~~~-~~~~~~~-~~~~vvDttGAGDaF~ag~l~~l~~---g~~~~~al~~---------a~a~Aa~~v~~~G~~~~~ 314 (326)
T PTZ00292 249 IVEKEN-EPVHVPG-KRVKAVDTTGAGDCFVGSMAYFMSR---GKDLKESCKR---------ANRIAAISVTRHGTQSSY 314 (326)
T ss_pred EEeCCC-ceEEccC-CccccCCCcchHHHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHcCCCCccccC
Confidence 998764 4588998 8889999999999999999999999 9999999999 99999 999999999889
Q ss_pred CChhHHHH
Q psy8082 325 RKSNSAFV 332 (379)
Q Consensus 325 p~~~~~~~ 332 (379)
|+.+++.+
T Consensus 315 ~~~~~~~~ 322 (326)
T PTZ00292 315 PHPSELPA 322 (326)
T ss_pred CCHHHHHH
Confidence 99877643
No 3
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=4.5e-46 Score=353.47 Aligned_cols=291 Identities=36% Similarity=0.557 Sum_probs=265.8
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+|+|++++|++..++++|.+++.+.......++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 79 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLRE-EGIDV 79 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHH-cCCCc
Confidence 58999999999999999988888888888899999999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
++++..++.+|+.+.+.++++|+|++..+.++...+++++++...+.++.++++++++..+.+....+++.+ ++++.
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~~g~ 156 (292)
T cd01174 80 SYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADVLLLQLEIPLETVLAALRAA---RRAGV 156 (292)
T ss_pred eEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHHH---HhcCC
Confidence 999777788999999999988999988888888888888888766678999999999988888899999999 99999
Q ss_pred EEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceE
Q psy8082 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255 (379)
Q Consensus 176 ~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~ 255 (379)
++++|+.+.. .....+++++|++++|++|++.+++....+.++..++++.+.+.+++.+++|+|++|+++++++ +.+
T Consensus 157 ~v~~D~~~~~-~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--~~~ 233 (292)
T cd01174 157 TVILNPAPAR-PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGG--EVE 233 (292)
T ss_pred EEEEeCCCcC-cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCC--ceE
Confidence 9999998643 2346889999999999999999999876666677788899999999999999999999999876 578
Q ss_pred EEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCC
Q psy8082 256 TITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERK 326 (379)
Q Consensus 256 ~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~ 326 (379)
++|+ ++.+++|||||||+|+|||++++++ |+++++|+++ |+.+| +++++.|+.+++|+
T Consensus 234 ~~~~-~~~~~vdt~GaGD~F~ag~l~~l~~---g~~~~~al~~---------a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 234 HVPA-FKVKAVDTTGAGDTFIGALAAALAR---GLSLEEAIRF---------ANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred EecC-CCcccCCCCCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCcCCCCCCCC
Confidence 8998 7889999999999999999999999 9999999999 99999 99999999988885
No 4
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.6e-43 Score=336.35 Aligned_cols=291 Identities=36% Similarity=0.544 Sum_probs=264.1
Q ss_pred CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceee
Q psy8082 21 GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWL 100 (379)
Q Consensus 21 G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~ 100 (379)
|++++|++..++++|.+++.+....+..++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||++++++.
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~~~~~~ 79 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKS-NGIDTEYVGT 79 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHH-cCCCeeEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred eCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEe
Q psy8082 101 LQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN 180 (379)
Q Consensus 101 ~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D 180 (379)
.++.+|++++++++++|+++++.+.+++..+++++++...+.+..+|+++++++.+.+.+..+++.+ ++++.++++|
T Consensus 80 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~D 156 (293)
T TIGR02152 80 VKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIA---KKHGVKVILN 156 (293)
T ss_pred cCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecCCCHHHHHHHHHHH---HHcCCEEEEE
Confidence 7777899999999988999988777888889999988766668999999999888888899999999 8899999999
Q ss_pred cCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccC
Q psy8082 181 PSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260 (379)
Q Consensus 181 ~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~ 260 (379)
+++........+++++|++++|++|++.+++....+.++..+.++.+.++|++.++||+|++|+++++++ +.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~--~~~~~~~- 233 (293)
T TIGR02152 157 PAPAIKDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKD--ESKLIPA- 233 (293)
T ss_pred CCcCcccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCC--ceeEccC-
Confidence 9865433446889999999999999999999866565677888888999999999999999999999877 5788888
Q ss_pred CCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 261 HVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 261 ~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
++.+++||+||||+|+|||++++++ |+++++|+++ |+.+| +++++.|+...+|+.+++
T Consensus 234 ~~~~~vdt~GAGDaf~Ag~l~~l~~---g~~~~~al~~---------a~~~Aa~~~~~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 234 FKVKAVDTTAAGDTFNGAFAVALAE---GKSLEDAIRF---------ANAAAAISVTRKGAQSSIPYLEEV 292 (293)
T ss_pred CCCceeCCCCcHHHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHHcccCcccCCCChHHc
Confidence 7889999999999999999999999 9999999999 99999 999999998878887653
No 5
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=3.4e-43 Score=337.64 Aligned_cols=303 Identities=17% Similarity=0.226 Sum_probs=255.8
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
+.+++|+|+|++++|++..++..+.++.. ........+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~~~~~~~~~-~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~-~ 79 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSHESLNYADS-NPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQ-S 79 (313)
T ss_pred CCCCcEEEECcEEEeeeccCCCcCcCCCC-CceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHH-c
Confidence 45679999999999999887654443333 345678889999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecC-CcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhh
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVS 170 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~ 170 (379)
||+++++...++.+|+.++++++++|++.+.... ++...++++.++...+.+++++++++++..+.+....+++.+
T Consensus 80 gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--- 156 (313)
T PRK09850 80 GVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNA--- 156 (313)
T ss_pred CCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhc---
Confidence 9999988777777899999999999999876542 445567777766544558899999999887777777666644
Q ss_pred ccCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 171 LESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
.+.++++||.+.+. ..+.++++++|++++|++|++.|++....+.+++.++++.+.+.|++.++||+|++|++++++
T Consensus 157 --~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~ 234 (313)
T PRK09850 157 --ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDI 234 (313)
T ss_pred --cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcC
Confidence 47899999986421 234577889999999999999999976655667888888898899999999999999999986
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
++ +..++|+ +++++||||||||+|+|||++++++ |+++++|+++ |+++| ++++..++....|+.+
T Consensus 235 ~~-~~~~~~~-~~~~vvDttGAGDaF~agfi~~l~~---g~~~~eal~~---------a~a~aa~~~~~~~~~~~~~~~~ 300 (313)
T PRK09850 235 SG-ESGWSAP-IKTNVINVTGAGDAMMAGLASCWVD---GMPFAESVRF---------AQGCSSMALSCEYTNNPDLSIA 300 (313)
T ss_pred CC-CeEecCC-CCcccccCCCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCCCCcccCHH
Confidence 54 4567888 7889999999999999999999999 9999999999 99999 9999999999999998
Q ss_pred HHHHHHHH
Q psy8082 329 SAFVSWFK 336 (379)
Q Consensus 329 ~~~~~~~~ 336 (379)
++. ++..
T Consensus 301 ~~~-~~~~ 307 (313)
T PRK09850 301 NVI-SLVE 307 (313)
T ss_pred HHH-HHHH
Confidence 864 5544
No 6
>KOG2855|consensus
Probab=100.00 E-value=1.9e-44 Score=336.19 Aligned_cols=305 Identities=28% Similarity=0.394 Sum_probs=256.1
Q ss_pred ccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhh
Q psy8082 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRK 89 (379)
Q Consensus 10 ~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~ 89 (379)
+.++++.|+|+|+.++|++..++.+|.++++.....+...+||+++|+|++++|||.++.|||+||+|.||+.+.+.|++
T Consensus 5 ~~~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~ 84 (330)
T KOG2855|consen 5 VYGEPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQ 84 (330)
T ss_pred cccCCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhh
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhh-
Q psy8082 90 YNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLH- 168 (379)
Q Consensus 90 ~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~- 168 (379)
++|+++++..+.+.+|+++++.+..||++.+.++.+++....++..+...+.++.+.++|+.++.+.+......+.++
T Consensus 85 -~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~ 163 (330)
T KOG2855|consen 85 -NGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAV 163 (330)
T ss_pred -CCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhh
Confidence 999999999999999999999999999999999888876655554333345699999999998776544444433330
Q ss_pred -hhccCCcEEEEecCCCC--C-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEE
Q psy8082 169 -VSLESRAKIIVNPSPAV--Y-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238 (379)
Q Consensus 169 -~~~~~~~~v~~D~~~~~--~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT 238 (379)
..++.+..+..||...+ | .....++..+|+++++.+|+.+++|.. ..+. . +|++.+++.||||
T Consensus 164 ~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~---~~~~---~-~L~~~~~k~viVT 236 (330)
T KOG2855|consen 164 KVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIE---DDKI---L-KLWHMKLKLVIVT 236 (330)
T ss_pred hhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCc---cchH---H-HHhccCCCEEEEE
Confidence 11566666666776432 3 124567778888888888888888762 1111 3 7888899999999
Q ss_pred ecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC--CC---HHHHHhhccCCcccHHHHHHH-
Q psy8082 239 LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG--GN---LDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 239 ~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g--~~---l~~A~~~~~~~~~~~~A~~~A- 312 (379)
+|++||+||+++... .++|+ +.+++||||||||+|.|||+.+|.+ | .+ +++++.+ |++++
T Consensus 237 lG~kG~~y~tk~~~~-~~v~~-~~V~~VDtTGAGDsFvgal~~~L~~---~~~~~~~~L~~~l~~---------A~a~~a 302 (330)
T KOG2855|consen 237 LGEKGCRYYTKDFKG-SHVPA-FKVKAVDTTGAGDSFVGALAVQLVR---GSLLPELSLEEALRF---------ANACGA 302 (330)
T ss_pred eCCCceEEEecCCCC-CCCCC-cccccccCCCchHHHHHHHHHHHhh---ccccchHHHHHHHHH---------HHHhhh
Confidence 999999999998633 68888 8999999999999999999999999 7 55 8899999 99999
Q ss_pred HHHhccccCCCCCChhHHHHHHHH
Q psy8082 313 RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 313 ~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
+++++.|+.+++|+.+++...+..
T Consensus 303 i~v~~~Ga~~s~p~~~~~~~~~~~ 326 (330)
T KOG2855|consen 303 ITVQRKGAIPSMPTEKEVQSLLKS 326 (330)
T ss_pred HHhhccCCCccCccHHHHHHHhhh
Confidence 999999999999999998665544
No 7
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.7e-43 Score=354.73 Aligned_cols=311 Identities=18% Similarity=0.223 Sum_probs=252.6
Q ss_pred CCccccccccCCCCcEEEECccccceecccCCCCCCCCcee-----------cCcEEEecCChHHHHHHHHHHCCCCeeE
Q psy8082 2 GDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVK-----------GYHFEQRFSGKGANQCVAAAKLRASVAL 70 (379)
Q Consensus 2 ~~~~~~~~~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~-----------~~~~~~~~GG~a~nvA~~l~~LG~~v~l 70 (379)
|+|.-..+. ++|++|+++|++++|+++.++++|.+++... .......+|| ++|+|+++++||.++.+
T Consensus 61 ~~~~~~~~~-~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~l 138 (470)
T PLN02341 61 GDTEVGSAA-GKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCST 138 (470)
T ss_pred ccccccccc-cccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEE
Confidence 344443333 5778999999999999999999998775321 1234455677 68999999999999999
Q ss_pred EEEecCChhHHHHHHHHhhhcCCcccceeeeC--------CcCceeEEEEEcCCCceeEEecCCcCCCCCHHHH----HH
Q psy8082 71 ISKLGNDKFGKSYLEELRKYNSINTKYIWLLQ--------DVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI----DA 138 (379)
Q Consensus 71 vs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~--------~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l----~~ 138 (379)
+|.+|+|.+|+.+++.|++ +||++.++...+ ..+|+.++++++++|++.+............+.+ +.
T Consensus 139 ig~VG~D~~G~~i~~~L~~-~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~ 217 (470)
T PLN02341 139 IGHVGDEIYGKFLLDVLAE-EGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAE 217 (470)
T ss_pred EEEecCcHHHHHHHHHHHH-cCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHH
Confidence 9999999999999999999 999999887654 3469999999998898765433221111111111 11
Q ss_pred HHhhccCccEEEEeCC----CCHHHHHHHHHHhhhhccCCcEEEEecCCCC---C-------CCchhhcccCeEEEeCHH
Q psy8082 139 AKNLLLKAKVIMFQGE----TPWETTLYCLSKLHVSLESRAKIIVNPSPAV---Y-------PLNPIVMILADIICINEQ 204 (379)
Q Consensus 139 ~~~~l~~~~~v~~~~~----~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~---~-------~~~~~ll~~~dil~~N~~ 204 (379)
..+.++++|++|+++. .+.+....+++.+ ++.+.++++||++.. | +.+..+++++|++++|++
T Consensus 218 ~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~A---k~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~ 294 (470)
T PLN02341 218 AKMAIRQSKALFCNGYVFDELSPSAIASAVDYA---IDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSE 294 (470)
T ss_pred HHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHH---HHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHH
Confidence 2234789999999874 4678888999999 999999999997542 1 235678999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcC--CCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHH
Q psy8082 205 EAEIITDMKINNEEDLADCMEKLLDMK--CNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYY 282 (379)
Q Consensus 205 E~~~l~~~~~~~~~~~~~~~~~l~~~g--~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~ 282 (379)
|++.++|. ++..++++.+.+.+ .+.||||+|++|+++++++ +.+++|+ +++++||||||||+|+|||+++
T Consensus 295 Ea~~l~g~-----~~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~--~~~~vpa-~~v~vVDTtGAGDaF~Agfl~g 366 (470)
T PLN02341 295 EAEALTGI-----RNPILAGQELLRPGIRTKWVVVKMGSKGSILVTRS--SVSCAPA-FKVNVVDTVGCGDSFAAAIALG 366 (470)
T ss_pred HHHHHhCC-----CCHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECC--eeEEeCC-CCcCCCCCcCccHHHHHHHHHH
Confidence 99999987 35677888887776 5899999999999999987 5788999 8999999999999999999999
Q ss_pred HHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHHHHHHHhcC
Q psy8082 283 FKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAFVSWFKNNG 339 (379)
Q Consensus 283 l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~~~~ 339 (379)
+++ |+++++|+++ |+++| ++|++.|+..++|+.+++ .++++.++
T Consensus 367 ll~---G~~l~eal~~---------A~a~aA~~v~~~Ga~~~~p~~~ev-~~~l~~~~ 411 (470)
T PLN02341 367 YIH---NLPLVNTLTL---------ANAVGAATAMGCGAGRNVATLEKV-LELLRASN 411 (470)
T ss_pred HHc---CCCHHHHHHH---------HHHHHHHHHcCcCCCCCCCCHHHH-HHHHHhcC
Confidence 999 9999999999 99999 999999999999999887 56666655
No 8
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=6.1e-43 Score=330.83 Aligned_cols=283 Identities=22% Similarity=0.284 Sum_probs=244.0
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+++|++++|++..++++|.+++.+....+...+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gI~~ 79 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAA-EGVDT 79 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHH-cCCCc
Confidence 68999999999999999998888888888999999999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
.+++..++.+|+++.+ ...+|+++...+.+....+..++++.. .+++++++|+++..+ +...++++.+ ++.|.
T Consensus 80 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~i~~~~~-~~~~~~~~~~---~~~g~ 152 (284)
T cd01945 80 SFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDA--ILGGADAVLVDGRQP-EAALHLAQEA---RARGI 152 (284)
T ss_pred cceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHH--HhCcCCEEEEcCCCH-HHHHHHHHHH---HHcCC
Confidence 9998776777888766 455677777666666666666666543 379999999998754 6777889998 88888
Q ss_pred EEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceE
Q psy8082 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255 (379)
Q Consensus 176 ~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~ 255 (379)
++++|..+.......++++++|++++|++|++.+++.. +. ++.+.+.+.+++.++||+|++|++++++++ +.+
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~dil~~n~~e~~~l~~~~-----~~-~~~~~l~~~~~~~vivt~G~~G~~~~~~~~-~~~ 225 (284)
T cd01945 153 PIPLDLDGGGLRVLEELLPLADHAICSENFLRPNTGSA-----DD-EALELLASLGIPFVAVTLGEAGCLWLERDG-ELF 225 (284)
T ss_pred CeeEeccCCcccchHHHhccCCEEEeChhHHhhhcCCC-----HH-HHHHHHHhcCCcEEEEEECCCCeEEEcCCC-CEE
Confidence 77666654333226688999999999999999998863 22 677778888999999999999999998433 588
Q ss_pred EEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCC
Q psy8082 256 TITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERK 326 (379)
Q Consensus 256 ~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~ 326 (379)
++|+ ++++++|||||||+|+|||++++++ |+++++|+++ |+++| +++++.|+.+++|+
T Consensus 226 ~~~~-~~~~vvDt~GAGDaf~ag~l~~l~~---g~~~~~al~~---------a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 226 HVPA-FPVEVVDTTGAGDVFHGAFAHALAE---GMPLREALRF---------ASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred ecCC-CccccccCCCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhccCCcccCCC
Confidence 9998 7899999999999999999999999 9999999999 99999 99999999988885
No 9
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=2.3e-43 Score=338.52 Aligned_cols=283 Identities=28% Similarity=0.403 Sum_probs=246.5
Q ss_pred CcEEEECccccceecccCCCC------CCCCceecC-----------cEEEecCChHHHHHHHHHHCCCCeeEEEEecCC
Q psy8082 15 ADIVVVGSCLVEFITYVQTLP------KPEETVKGY-----------HFEQRFSGKGANQCVAAAKLRASVALISKLGND 77 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p------~~~~~~~~~-----------~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D 77 (379)
.+|+++|++++|++..++++| .+++.+... .....+||+++|+|.++++||.++.++|.+|+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 579999999999999999887 446655553 468889999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCC---
Q psy8082 78 KFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGE--- 154 (379)
Q Consensus 78 ~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~--- 154 (379)
.+|+.+++.|++ +||+++++... +.+|+.++++++++|+|+++.+.++...+++++++. ..+++++++|+++.
T Consensus 82 ~~g~~i~~~l~~-~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~l~~~~~v~~~~~~~~ 157 (312)
T cd01168 82 KLGDFLLKDLRA-AGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW--SLLAKAKYLYLEGYLLT 157 (312)
T ss_pred hhHHHHHHHHHH-CCCccccccCC-CCCceEEEEEEcCCCceeeecccchhhcCChhHCCH--HHHccCCEEEEEEEecC
Confidence 999999999999 99999988754 578999999999899999887778888888888764 34889999999874
Q ss_pred CCHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh
Q psy8082 155 TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD 229 (379)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~ 229 (379)
.+.+.+..+++.+ ++.+.++++|+....+ +.+..+++++|++++|++|++.|++.+ .++..+.++.+++
T Consensus 158 ~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~---~~~~~~~a~~l~~ 231 (312)
T cd01168 158 VPPEAILLAAEHA---KENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEAE---TTDDLEAALKLLA 231 (312)
T ss_pred CCHHHHHHHHHHH---HHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC---CCChHHHHHHHHh
Confidence 3458888899998 8899999999974321 234578899999999999999999852 1355678888999
Q ss_pred cCCCEEEEEecCCceEEEecCCCceEEEccCCC-cCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHH
Q psy8082 230 MKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQ 308 (379)
Q Consensus 230 ~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~-~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A 308 (379)
.+++.+|||+|++|+++++++ +.+++|+ ++ +++||||||||+|+|||++++++ |+++++|+++ |
T Consensus 232 ~g~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~~~~vvDttGAGDaf~ag~l~~l~~---g~~~~~a~~~---------a 296 (312)
T cd01168 232 LRCRIVVITQGAKGAVVVEGG--EVYPVPA-IPVEKIVDTNGAGDAFAGGFLYGLVQ---GEPLEECIRL---------G 296 (312)
T ss_pred cCCCEEEEecCCCCeEEEECC--EEEeCCC-CCCCCcccCCchHHHHHHHHHHHHHc---CCCHHHHHHH---------H
Confidence 999999999999999999866 6788998 77 89999999999999999999999 9999999999 9
Q ss_pred HHHH-HHHhccccCC
Q psy8082 309 CLVA-RRVQLEGKNS 322 (379)
Q Consensus 309 ~~~A-~~v~~~G~~~ 322 (379)
+++| ++|++.|+..
T Consensus 297 ~~~Aa~~v~~~G~~~ 311 (312)
T cd01168 297 SYAAAEVIQQLGPRL 311 (312)
T ss_pred HHHHHHHHhccCCCC
Confidence 9999 9999999753
No 10
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6.5e-43 Score=347.43 Aligned_cols=299 Identities=21% Similarity=0.268 Sum_probs=252.9
Q ss_pred CCCcEEEECccccceecccCC-------CCCCC-------------CceecCcEEEecCChHHHHHHHHHHCC-------
Q psy8082 13 DEADIVVVGSCLVEFITYVQT-------LPKPE-------------ETVKGYHFEQRFSGKGANQCVAAAKLR------- 65 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~-------~p~~~-------------~~~~~~~~~~~~GG~a~nvA~~l~~LG------- 65 (379)
+..+|+++|++++|++..+++ +|+++ +++....+...+||++.|+|+++++||
T Consensus 68 ~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~~ 147 (426)
T PLN02813 68 ERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGP 147 (426)
T ss_pred CcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccCC
Confidence 457899999999999999998 88877 444666788999999999999999999
Q ss_pred -CCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhcc
Q psy8082 66 -ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLL 144 (379)
Q Consensus 66 -~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~ 144 (379)
.++.++|.+|+|.+|+.+++.|++ +||++..+.. .+.+|+.++++++++|+|+++.+.+++..++++++. .+.++
T Consensus 148 ~~~v~~ig~VG~D~~G~~i~~~L~~-~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~--~~~i~ 223 (426)
T PLN02813 148 ALNVAMAGSVGSDPLGDFYRTKLRR-ANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL--ASAIS 223 (426)
T ss_pred CCcEEEEEEeCCChHHHHHHHHHHH-cCCcccceec-CCCCceEEEEEEcCCCCceeeeccCchhhCCccccC--HHHHh
Confidence 799999999999999999999999 9999988764 456899999999999999999888877777665543 23488
Q ss_pred CccEEEEeCC---CC--HHHHHHHHHHhhhhccCCcEEEEecCCCCC------CCchhhcccCeEEEeCHHHHHHhhCCC
Q psy8082 145 KAKVIMFQGE---TP--WETTLYCLSKLHVSLESRAKIIVNPSPAVY------PLNPIVMILADIICINEQEAEIITDMK 213 (379)
Q Consensus 145 ~~~~v~~~~~---~~--~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~------~~~~~ll~~~dil~~N~~E~~~l~~~~ 213 (379)
+++++|+++. .+ .+.+.++++.+ ++.++++++|+.+... ...+.+++++|++++|++|+..|++..
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~a---k~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~ 300 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEA---HRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGLG 300 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHH---HHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCC
Confidence 9999999873 23 36778888888 8999999999886421 123445689999999999999999863
Q ss_pred CCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCC-CH
Q psy8082 214 INNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGG-NL 292 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~-~l 292 (379)
. .++..++.+.+. ++++.||||+|++|+++++++ +.+++|+ +++++||||||||+|+|||++++++ |+ ++
T Consensus 301 ~--~~~~~~a~~~L~-~~~~~VVVT~G~~Ga~~~~~~--~~~~~pa-~~v~vVDTtGAGDAF~Agfl~~l~~---G~~~l 371 (426)
T PLN02813 301 S--EESPESATRYLS-HFCPLVSVTDGARGSYIGVKG--EAVYIPP-SPCVPVDTCGAGDAYAAGILYGLLR---GVSDL 371 (426)
T ss_pred C--CCCHHHHHHHHH-cCCCEEEEEeCCCCeEEEECC--EEEEeCC-CCCCcccCCChHHHHHHHHHHHHHc---CCCCH
Confidence 1 134556666554 689999999999999998876 6889999 8899999999999999999999999 99 99
Q ss_pred HHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHHHHHHHh
Q psy8082 293 DSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAFVSWFKN 337 (379)
Q Consensus 293 ~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~~ 337 (379)
++|+++ |+++| ++|++.|+..++|+.+++. +.+++
T Consensus 372 ~~al~~---------A~a~Aa~~v~~~Ga~~~~~~~~e~~-~~~~~ 407 (426)
T PLN02813 372 RGMGEL---------AARVAATVVGQQGTRLRVEDAVELA-ESFAL 407 (426)
T ss_pred HHHHHH---------HHHHHHHHHcccCCCcCHHHHHHHH-HHHHH
Confidence 999999 99999 9999999999999888865 44443
No 11
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.8e-43 Score=336.49 Aligned_cols=292 Identities=28% Similarity=0.395 Sum_probs=254.3
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++..++.+ .++..+.......+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~-~gv 77 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF--KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKE-RGV 77 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH--TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHH-TTE
T ss_pred CCcEEEECccceEEEeecCCc--CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccc-ccc
Confidence 578999999999999998877 44445888999999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeC-----CCCHHHHHHHHHHhh
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSKLH 168 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~-----~~~~~~~~~~~~~a~ 168 (379)
+++++.+.++.+|++++...+++|+|++..+.++...++++++. ...+.+++++|+++ ..+......+.+.+
T Consensus 78 ~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (301)
T PF00294_consen 78 DTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELD--EEAIDEADILHLSGVSLPEGIPEDLLEALAKAA- 154 (301)
T ss_dssp EETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHH--HHHHHTESEEEEESGHCSTTSHHHHHHHHHHHH-
T ss_pred cccccccccccccceeEeeecccccceeeecccccccccccccc--ccccccccceeecccccccccccceeeeccccc-
Confidence 99999988888999999999999999998888878888887763 34588999999999 55567777777777
Q ss_pred hhccCC--cEEEEecCCC-CCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy8082 169 VSLESR--AKIIVNPSPA-VYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (379)
Q Consensus 169 ~~~~~~--~~v~~D~~~~-~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~ 245 (379)
++.+ .+++.++... ..+.+.++++.+|++++|++|+..+++....+.++..+..+.++.++++.+++|+|++|++
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~ 232 (301)
T PF00294_consen 155 --KKNGPFDPVFRDPSWDDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGAL 232 (301)
T ss_dssp --HHTTEEEEEEEGGGSHHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEE
T ss_pred --ccccccccccccccccccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCcc
Confidence 7777 3455555432 1245667889999999999999999999876777888888888889999999999999999
Q ss_pred EEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCC
Q psy8082 246 YATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSE 324 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~ 324 (379)
+++++ +.+++++.++.+++|||||||+|+|||++++++ |+++++|+++ |+.+| ++|++.|+.+++
T Consensus 233 ~~~~~--~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~---~~~~~~a~~~---------a~~~aa~~v~~~g~~~~~ 298 (301)
T PF00294_consen 233 YYTND--ESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLS---GMSLEEALKF---------ANAAAALKVQQPGPRSPL 298 (301)
T ss_dssp EEETT--EEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHT---THHHHHHHHH---------HHHHHHHHHTSSSSSGGT
T ss_pred ccccc--ccccccccccccccceeccchhhhHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhCCCCCcCCC
Confidence 99976 677877734679999999999999999999999 9999999999 99999 999999999999
Q ss_pred CCh
Q psy8082 325 RKS 327 (379)
Q Consensus 325 p~~ 327 (379)
||.
T Consensus 299 p~~ 301 (301)
T PF00294_consen 299 PTA 301 (301)
T ss_dssp T--
T ss_pred CCC
Confidence 973
No 12
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.2e-42 Score=338.24 Aligned_cols=291 Identities=19% Similarity=0.253 Sum_probs=244.3
Q ss_pred cCCCCcEEEECccccceecccCC------CCCCCCceecCc--------------EEEecCChHHHHHHHHHHCC---C-
Q psy8082 11 LKDEADIVVVGSCLVEFITYVQT------LPKPEETVKGYH--------------FEQRFSGKGANQCVAAAKLR---A- 66 (379)
Q Consensus 11 ~~~~~~i~viG~~~iD~i~~~~~------~p~~~~~~~~~~--------------~~~~~GG~a~nvA~~l~~LG---~- 66 (379)
.|+.++|+++|++++|++..+++ .|.+++.....+ ....+||+++|+|+++++|| .
T Consensus 2 ~~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~ 81 (345)
T PTZ00247 2 SSAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKG 81 (345)
T ss_pred CCCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCC
Confidence 46678899999999999999985 467777666555 47899999999999999875 5
Q ss_pred CeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH--Hhhcc
Q psy8082 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA--KNLLL 144 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~--~~~l~ 144 (379)
++.++|.+|+|.+|+.+++.|++ .||+++++. .++.+|+++++++++ |+|+++.+.+++..+++++++.. .+.++
T Consensus 82 ~v~~ig~vG~D~~G~~i~~~l~~-~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~ 158 (345)
T PTZ00247 82 FVCYVGCVGDDRFAEILKEAAEK-DGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVANLGAANHLSAEHMQSHAVQEAIK 158 (345)
T ss_pred cEEEEEEeccchhHHHHHHHHHH-cCCeeeccc-cCCCCcEEEEEEEcC-CCcccccCcchhhcCChHHcCcHHHHHHHh
Confidence 89999999999999999999999 999998875 567789999998874 79988877888888998887642 23488
Q ss_pred CccEEEEeCC---CCHHHHHHHHHHhhhhccCCcEEEEecCCCC-----CCCchhhcccCeEEEeCHHHHHHhhCCCCCC
Q psy8082 145 KAKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINN 216 (379)
Q Consensus 145 ~~~~v~~~~~---~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-----~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~ 216 (379)
+++++|+++. .+.+....+++.+ +++++++++|+.... ++.+.++++++|++++|++|++.|+|....+
T Consensus 159 ~~~~v~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~ 235 (345)
T PTZ00247 159 TAQLYYLEGFFLTVSPNNVLQVAKHA---RESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWD 235 (345)
T ss_pred hCCEEEEEEEEecccHHHHHHHHHHH---HHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCC
Confidence 9999999874 4678899999999 999999999987432 1235678999999999999999999842111
Q ss_pred hhhHHHHHHHHHh------cCCCEEEEEecCCceEEEecCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHHhcC
Q psy8082 217 EEDLADCMEKLLD------MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFKAGQ 287 (379)
Q Consensus 217 ~~~~~~~~~~l~~------~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~~~~ 287 (379)
.++..++++.+.+ .+++.|+||+|++|+++++++ +.+++|+ +++ ++||||||||+|+|||++++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~--~~~~~~~-~~v~~~~vVDTtGAGDaF~agfl~~l~~-- 310 (345)
T PTZ00247 236 TEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKD--GVTSVPV-PPLDQEKIVDTNGAGDAFVGGFLAQYAN-- 310 (345)
T ss_pred ccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECC--EEEEEec-cccCCCCccCCCChHHHHHHHHHHHHHc--
Confidence 2356666666654 257899999999999999976 5778887 666 5999999999999999999999
Q ss_pred CCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCC
Q psy8082 288 KGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNS 322 (379)
Q Consensus 288 ~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~ 322 (379)
|+++++|+++ |+++| ++|++.|+..
T Consensus 311 -g~~~~~al~~---------a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 311 -GKDIDRCVEA---------GHYSAQVIIQHNGCTY 336 (345)
T ss_pred -CCCHHHHHHH---------HHHHHHHHHhccCCCC
Confidence 9999999999 99999 9999999863
No 13
>PLN02323 probable fructokinase
Probab=100.00 E-value=1e-41 Score=329.76 Aligned_cols=297 Identities=21% Similarity=0.292 Sum_probs=245.5
Q ss_pred ccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhh
Q psy8082 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRK 89 (379)
Q Consensus 10 ~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~ 89 (379)
+-.+.++|+++|++++|++..+++.|. .....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++
T Consensus 6 ~~~~~~~i~~iG~~~vD~~~~~~~~~~----~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~ 81 (330)
T PLN02323 6 STAESSLVVCFGEMLIDFVPTVSGVSL----AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKK 81 (330)
T ss_pred ccCCCCcEEEechhhhhhccCCCCCCc----ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHH
Confidence 334667899999999999987766543 2345677889999999999999999999999999999999999999999
Q ss_pred hcCCcccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCC-----CHHHHHH
Q psy8082 90 YNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLY 162 (379)
Q Consensus 90 ~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~ 162 (379)
.||+++++.+.++.+|+.+++.++++|+|++..+. +++..+++++++. +.+++++++|+++.. .......
T Consensus 82 -~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (330)
T PLN02323 82 -NGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL--DLIRKAKIFHYGSISLITEPCRSAHLA 158 (330)
T ss_pred -cCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh--HHHccCCEEEEechhccCchHHHHHHH
Confidence 99999999888888899999988889999987664 5566778877764 237889999887532 2245567
Q ss_pred HHHHhhhhccCCcEEEEecCCC--CC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCC
Q psy8082 163 CLSKLHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCN 233 (379)
Q Consensus 163 ~~~~a~~~~~~~~~v~~D~~~~--~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~ 233 (379)
+++.+ ++.|.++++||+.. .| +.+..+++++|++++|++|+..+++....+. .+.. +++..|++
T Consensus 159 ~~~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~---~~~~-~~~~~g~~ 231 (330)
T PLN02323 159 AMKIA---KEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDD---DTVV-KLWHPNLK 231 (330)
T ss_pred HHHHH---HHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccH---HHHH-HHHhcCCC
Confidence 88888 88999999999743 22 1245678899999999999999998643222 2222 45567999
Q ss_pred EEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCC-------HHHHHhhccCCcccH
Q psy8082 234 TVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGN-------LDSCRLRNGRGILKE 306 (379)
Q Consensus 234 ~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~-------l~~A~~~~~~~~~~~ 306 (379)
.+|||+|++|+++++++ +.+++|+ +++++||||||||+|+|||++++++ |++ +++|+++
T Consensus 232 ~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaf~Agfl~~l~~---g~~~~~~~~~l~~al~~-------- 297 (330)
T PLN02323 232 LLLVTEGEEGCRYYTKD--FKGRVEG-FKVKAVDTTGAGDAFVGGLLSQLAK---DLSLLEDEERLREALRF-------- 297 (330)
T ss_pred EEEEecCCCceEEEeCC--CceEeCC-ccCCCCCCCCcHHHHHHHHHHHHHc---CCccccchHHHHHHHHH--------
Confidence 99999999999999876 4678898 8889999999999999999999999 986 8999999
Q ss_pred HHHHHH-HHHhccccCCCCCChhHHHHHHHH
Q psy8082 307 LQCLVA-RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 307 ~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
|+++| ++|++.|+..++|+.+++ +++++
T Consensus 298 -a~a~Aa~~v~~~g~~~~~~~~~~v-~~~l~ 326 (330)
T PLN02323 298 -ANACGAITTTERGAIPALPTKEAV-LKLLK 326 (330)
T ss_pred -HHHHHHHHHhccCCccCCCCHHHH-HHHHH
Confidence 99999 999999998889999886 44544
No 14
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=3.2e-41 Score=330.30 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=238.5
Q ss_pred CCcEEEECccccceecccC-CCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 14 EADIVVVGSCLVEFITYVQ-TLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~-~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
...|+|+|++++|++..++ ++|.+++ ........+||+|.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .|
T Consensus 57 ~~~v~viG~~~vD~~~~~~~~~p~~~~--~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~-~G 133 (362)
T PRK09954 57 QEYCVVVGAINMDIRGMADIRYPQAAS--HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRR-AG 133 (362)
T ss_pred CccEEEEEEEEEEEEEeeCCcCcCCCC--CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHH-cC
Confidence 3479999999999998887 6676554 345778889999999999999999999999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCC--cCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhh
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG--ANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVS 170 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~--~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~ 170 (379)
|+++++...++.+|+.++.+.++++++.+ .+.+ ....++++.++.....+..+++++++++.+.+....+++.+
T Consensus 134 Vd~~~~~~~~~~~T~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--- 209 (362)
T PRK09954 134 VNVSGCIRLHGQSTSTYLAIANRQDETVL-AINDTHILQQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFTLA--- 209 (362)
T ss_pred CCccceEEcCCCCCeEEEEEEcCCCCEEE-EEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHhC---
Confidence 99999888777789988887776555444 4433 34577887777655557889999999888877777776655
Q ss_pred ccCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 171 LESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
+ ++++++|+.+..+ ..+.++++++|++++|++|++.++|....+.++..++++.+.++|++.|+||+|++|++++++
T Consensus 210 ~--~~~v~~D~~~~~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~ 287 (362)
T PRK09954 210 D--EIPVFVDTVSEFKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEK 287 (362)
T ss_pred C--CCcEEEECCCHHHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeC
Confidence 3 6899999986432 335678999999999999999999976655566778888899999999999999999998876
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
++ +.+++|+ +++++||||||||+|+|||++++++ |+++++|+++ |+++| +++....+.
T Consensus 288 ~~-~~~~~~~-~~v~vvDttGAGDaF~Ag~l~~l~~---g~~~~eal~~---------a~a~Aal~~~s~~~~ 346 (362)
T PRK09954 288 DG-EQFLLTA-PAHTTVDSFGADDGFMAGLVYSFLE---GYSFRDSARF---------AMACAAISRASGSLN 346 (362)
T ss_pred CC-ceEeccC-CCcccccccchHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCcC
Confidence 54 4677788 7889999999999999999999999 9999999999 99999 986654443
No 15
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.4e-41 Score=320.91 Aligned_cols=278 Identities=19% Similarity=0.237 Sum_probs=236.7
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+++|++++|++..++++|.++..+....+...+|| +.|+|.++++||.++.++|.+|+|.+|+.+.+.|++ .||++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 78 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRD-EGIEI 78 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHH-cCCcc
Confidence 5899999999999999999888888888889999999 999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCC------CHHHHHHHHHHhhh
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGET------PWETTLYCLSKLHV 169 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~------~~~~~~~~~~~a~~ 169 (379)
+++... +.+|+.++++++++|+|+++.+.+++..+++++++.. .+.+++++|+++.. ..+.+.++++.+
T Consensus 79 ~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (289)
T cd01944 79 LLPPRG-GDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATL--TVAPYDYVYLSGYTLASENASKVILLEWLEAL-- 153 (289)
T ss_pred cccccc-CCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccc--cCCCCCEEEEeCccccCcchhHHHHHHHHHhc--
Confidence 988764 6678888888888999998888887778888777653 27899999998642 134445555554
Q ss_pred hccCCcEEEEecCCCCC----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy8082 170 SLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (379)
Q Consensus 170 ~~~~~~~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~ 245 (379)
+ .+.++++|+++..+ +.+..+++++|++++|++|++.+++.... +....++.+.+.+++.++||+|++|++
T Consensus 154 -~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~---~~~~~~~~~~~~~~~~vvvt~G~~Ga~ 228 (289)
T cd01944 154 -P-AGTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERGDP---AAEASALRIYAKTAAPVVVRLGSNGAW 228 (289)
T ss_pred -c-CCCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCCCc---chHHHHHHHHhccCCeEEEEECCCcEE
Confidence 4 46889999986543 23567789999999999999999996422 222345677788999999999999999
Q ss_pred EEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccc
Q psy8082 246 YATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEG 319 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G 319 (379)
++++++ +.+++|+ ++++++|||||||+|+|||++++++ |+++++|+++ |+++| ++|++.|
T Consensus 229 ~~~~~~-~~~~~~~-~~~~vvDt~GAGDaf~ag~l~~~~~---g~~~~~a~~~---------a~a~aa~~~~~~G 289 (289)
T cd01944 229 IRLPDG-NTHIIPG-FKVKAVDTIGAGDTHAGGMLAGLAK---GMSLADAVLL---------ANAAAAIVVTRSG 289 (289)
T ss_pred EEecCC-CeEEecC-CCCCCccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHhhhccCC
Confidence 998654 5788888 7889999999999999999999999 9999999999 99999 9999876
No 16
>PLN02967 kinase
Probab=100.00 E-value=3.1e-41 Score=340.90 Aligned_cols=299 Identities=20% Similarity=0.228 Sum_probs=240.6
Q ss_pred CCcEEEECccccceecccCCCC--CCC---C-----ceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHH
Q psy8082 14 EADIVVVGSCLVEFITYVQTLP--KPE---E-----TVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSY 83 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p--~~~---~-----~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i 83 (379)
.+.|+|||++++|++....... ... . ......+...+||+++|+|+++++||.++.|+|.||+|.+|+.+
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 4579999999999976321100 000 0 11235778889999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEe-cCCcCCCCCHHHHHHHHhhccCccEEEEeCC-----CCH
Q psy8082 84 LEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNI-IPGANTYLSASDIDAAKNLLLKAKVIMFQGE-----TPW 157 (379)
Q Consensus 84 ~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~~ 157 (379)
++.|++ +||+++++...++.+|+.+++.++++|+++++. .++++..+++++++. ..+++++++|+++. ...
T Consensus 276 l~~L~~-~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~--~~l~~A~i~hfgg~~ll~e~~~ 352 (581)
T PLN02967 276 LYYLNV-NKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI--DVLKEAKMFYFNTHSLLDPTMR 352 (581)
T ss_pred HHHHHH-cCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH--hHhcCCCEEEEeCchhcccchH
Confidence 999999 999999998888889999999999999988753 467888888887764 34889999999874 234
Q ss_pred HHHHHHHHHhhhhccCCcEEEEecCC--CCCC-------CchhhcccCeEEEeCHHHHHHhhCCCCCChh----------
Q psy8082 158 ETTLYCLSKLHVSLESRAKIIVNPSP--AVYP-------LNPIVMILADIICINEQEAEIITDMKINNEE---------- 218 (379)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~D~~~--~~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~---------- 218 (379)
+.+..+++.+ ++.|++|+|||+. .+|. .+.++++++||+++|++|+..|+|.......
T Consensus 353 ~all~alk~A---k~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~ 429 (581)
T PLN02967 353 STTLRAIKIS---KKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKF 429 (581)
T ss_pred HHHHHHHHHH---HHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhcc
Confidence 6788899998 9999999999973 3442 3467889999999999999999985311000
Q ss_pred --hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC-ceEEEccCCCcC--cccCCChhHHHHHHHHHHHHhcCCC----
Q psy8082 219 --DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-RLKTITVDHVEY--PIESEGVGDCFVGALAYYFKAGQKG---- 289 (379)
Q Consensus 219 --~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~-~~~~~~~~~~~~--vvDttGAGDaF~ag~~~~l~~~~~g---- 289 (379)
...+.+..+...+++.|+||+|++|+++++++.. ....+++ ++++ +||||||||+|.|||+++|++ |
T Consensus 430 ~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a-~~V~V~vVDTTGAGDAF~AGfL~~Ll~---g~~~~ 505 (581)
T PLN02967 430 VHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMED-APITPFTSDMSASGDGIVAGLMRMLTV---QPHLI 505 (581)
T ss_pred ccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccC-CCCCCCCCCCCchhHHHHHHHHHHHHh---ccCcc
Confidence 0123456677779999999999999999987531 2334454 4555 599999999999999999997 5
Q ss_pred ---CCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 290 ---GNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 290 ---~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
.++++|+++ |+++| ++++..|+..++|+.+++.
T Consensus 506 ~g~~~LeeaLrf---------AnAaAAL~vt~~GA~~glPt~~eV~ 542 (581)
T PLN02967 506 TDKGYLEKTIKY---------AIDCGVIDQWLLARTRGFPPKEDME 542 (581)
T ss_pred cccccHHHHHHH---------HHHHHHHHhccCCCccCCCCHHHHh
Confidence 579999999 99999 9999999999999998874
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-41 Score=321.36 Aligned_cols=296 Identities=31% Similarity=0.415 Sum_probs=254.9
Q ss_pred cEEEECccccceecc-cCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 16 DIVVVGSCLVEFITY-VQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 16 ~i~viG~~~iD~i~~-~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
+|+++|++++|++.. .+.+|.+++..........+||++.|+|+++++||.++.|+|++|+|.+|+.+++.|++ +||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~-~GVd 79 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRK-EGVD 79 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHH-cCCc
Confidence 589999999999996 77788877777776788999999999999999999999999999999999999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecCC-cCCCCCHHHHHHHHhhccCccEEEEeCC---CCHHHHHHHHHHhhhh
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG-ANTYLSASDIDAAKNLLLKAKVIMFQGE---TPWETTLYCLSKLHVS 170 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~-~~~~l~~~~l~~~~~~l~~~~~v~~~~~---~~~~~~~~~~~~a~~~ 170 (379)
++++......+|+.+++.++++|+|.+..+.+ +...+++++++. ..+..++.+|+++. .+++....+++.+
T Consensus 80 ~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a--- 154 (311)
T COG0524 80 TSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE--DELAGADVLHISGIQLEIPPEALLAALELA--- 154 (311)
T ss_pred cceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh--HHHhhcCeeeEEEeecCCChHHHHHHHHHH---
Confidence 99998887778999999999999999998887 577788888874 23779999998753 3348899999999
Q ss_pred ccCCcEEEEecCCC--CC--CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy8082 171 LESRAKIIVNPSPA--VY--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (379)
Q Consensus 171 ~~~~~~v~~D~~~~--~~--~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~ 246 (379)
++.+.++++|+++. .| +.+..+++.+|++++|++|++.+++.. .+..+....++..+++.++||+|++|+++
T Consensus 155 ~~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~----~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~ 230 (311)
T COG0524 155 KAAGVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGLE----EDAEAAAALLLAKGVKTVVVTLGAEGAVV 230 (311)
T ss_pred HHcCCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCCC----ccHHHHHHHHhhcCCCEEEEEeCCCcEEE
Confidence 99999988888754 33 557789999999999999999999851 24444446678889999999999999999
Q ss_pred EecCCC-ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCC
Q psy8082 247 ATRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSE 324 (379)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~ 324 (379)
+++++. .....+. +++++||||||||+|.|||++++++ |+++++|+++ |+++| ++++..|+..++
T Consensus 231 ~~~~~~~~~~~~~~-~~~~vvDttGAGDaF~agfl~~~~~---g~~~~~a~~~---------a~a~aa~~~~~~g~~~~~ 297 (311)
T COG0524 231 FTGGGEVTVPVPAA-FKVKVVDTTGAGDAFAAGFLAGLLE---GKSLEEALRF---------ANAAAALAVTRPGARPSL 297 (311)
T ss_pred EeCCCceeeccCCC-CccccccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHhhhhhccCCCCCCC
Confidence 998642 1222335 7789999999999999999999999 9999999999 99999 999999999999
Q ss_pred CChhHHHHHH
Q psy8082 325 RKSNSAFVSW 334 (379)
Q Consensus 325 p~~~~~~~~~ 334 (379)
|+.+++...+
T Consensus 298 p~~~~~~~~~ 307 (311)
T COG0524 298 PTREEVEAFL 307 (311)
T ss_pred CCHHHHHHHH
Confidence 9998875443
No 18
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=7.9e-41 Score=330.93 Aligned_cols=303 Identities=18% Similarity=0.190 Sum_probs=245.5
Q ss_pred ccccCCCCcEEEECccccceecccC-------CCCCCCCceecC-------------c--EEEecCChHHHHHHHHHHCC
Q psy8082 8 VANLKDEADIVVVGSCLVEFITYVQ-------TLPKPEETVKGY-------------H--FEQRFSGKGANQCVAAAKLR 65 (379)
Q Consensus 8 ~~~~~~~~~i~viG~~~iD~i~~~~-------~~p~~~~~~~~~-------------~--~~~~~GG~a~nvA~~l~~LG 65 (379)
-+++.+.-+|+.+|++++|+...++ .+++.+..+... . ....+||++.|+|+++++||
T Consensus 27 ~~~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLG 106 (434)
T PRK15074 27 PENETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLA 106 (434)
T ss_pred cccCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcC
Confidence 3455666789999999999998876 232222211100 1 35569999999999999996
Q ss_pred -CCeeEEEEecCC-hhHHHHHHHHh--hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHh
Q psy8082 66 -ASVALISKLGND-KFGKSYLEELR--KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKN 141 (379)
Q Consensus 66 -~~v~lvs~vG~D-~~g~~i~~~l~--~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~ 141 (379)
.++.|+|+||+| .+|+.+.+.|+ + .||++.++... +.+|++++++++++|+|+++.+.+++..+++++++. .
T Consensus 107 G~~~~fig~VGdDd~~G~~~~~~L~~~~-~GVdt~~v~~~-~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~--~ 182 (434)
T PRK15074 107 DDRSVLLGVMSSNIEIGSYAYRYLCNTS-SRTDLNYLQGV-DGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE--D 182 (434)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHhhhhh-CCccCcceEEc-CCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH--h
Confidence 999999999999 79999999996 6 89999988654 458999999999999999999999999999998875 3
Q ss_pred hccCccEEEEeCCC--------CHHHHHHHHHHhhhhccCCcEEEEecCCCC--C---CC-chhhcccCeEEEeCHHHHH
Q psy8082 142 LLLKAKVIMFQGET--------PWETTLYCLSKLHVSLESRAKIIVNPSPAV--Y---PL-NPIVMILADIICINEQEAE 207 (379)
Q Consensus 142 ~l~~~~~v~~~~~~--------~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~--~---~~-~~~ll~~~dil~~N~~E~~ 207 (379)
.+++++++|+++.. ..+...++++.+ ++.|+++++|++... + +. ...+++++|++++|++|+.
T Consensus 183 ~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~A---ke~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~ 259 (434)
T PRK15074 183 VIAGASALVLTAYLVRCKPGEPMPEATMKAIEYA---KKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAE 259 (434)
T ss_pred HhccCCEEEEeeeehhcccCCCcHHHHHHHHHHH---HHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHH
Confidence 48999999998743 257788899999 999999999998652 1 11 2245579999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC-----ce----------------------------
Q psy8082 208 IITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-----RL---------------------------- 254 (379)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~-----~~---------------------------- 254 (379)
.|++. ++.+++++.+.+ .++.|+||+|++|++++..... ..
T Consensus 260 ~LtG~-----~d~eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15074 260 ALTGE-----SDPLLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNP 333 (434)
T ss_pred HHhCC-----CCHHHHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccc
Confidence 99986 356677777765 5899999999999999652210 11
Q ss_pred ----EEEccCC---CcCcccCCChhHHHHHHHHHHHHhcCCCC--------------------CHHHHHhhccCCcccHH
Q psy8082 255 ----KTITVDH---VEYPIESEGVGDCFVGALAYYFKAGQKGG--------------------NLDSCRLRNGRGILKEL 307 (379)
Q Consensus 255 ----~~~~~~~---~~~vvDttGAGDaF~ag~~~~l~~~~~g~--------------------~l~~A~~~~~~~~~~~~ 307 (379)
+++|+ + ++++||||||||+|+|||+|+|++ |+ ++++|+++
T Consensus 334 ~~~~~~~~~-~~~~~~~~vDttGAGD~f~~gfl~~l~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 400 (434)
T PRK15074 334 LRVYSHIAP-YMGGPEKIMNTNGAGDGALSALLHDITA---NSYHRSNVPNSSKHKRTYLTYSSLAQVCKY--------- 400 (434)
T ss_pred cccccccCc-ccCCCCcceeCCCcHHHHHHHHHHHHHC---CCcccccccccccccccccccCCHHHHHHH---------
Confidence 27887 6 788999999999999999999999 87 89999999
Q ss_pred HHHHH-HHHhcccc--CCCCCChhHHHHHHHH
Q psy8082 308 QCLVA-RRVQLEGK--NSSERKSNSAFVSWFK 336 (379)
Q Consensus 308 A~~~A-~~v~~~G~--~~~~p~~~~~~~~~~~ 336 (379)
|+.+| .++++.|+ ..++|+.++.+++-++
T Consensus 401 ~~~~a~~vi~~~G~~~~~~~p~~~~~~~~~~~ 432 (434)
T PRK15074 401 ANRVSYEVLNQHSPRLSRGLPEREDSLEESYW 432 (434)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCccchhhhhhc
Confidence 99999 99999999 6678888776665443
No 19
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.3e-40 Score=333.45 Aligned_cols=299 Identities=17% Similarity=0.199 Sum_probs=232.8
Q ss_pred CCcEEEECccccceecccCCCCCC----------CCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHH
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKP----------EETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSY 83 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~----------~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i 83 (379)
.++|+|+|++++|++........+ .-......+...+||+++|+|+++++||.++.|+|+||+|.+|+.+
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 456999999999998653210000 0001356788999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccceeeeCCcCceeEEEEEc--CCCceeEE-e-cCCcCCCCCHHHHHHHHhhccCccEEEEeCCC---C
Q psy8082 84 LEELRKYNSINTKYIWLLQDVTTGVCSKVIS--NKGTHQTN-I-IPGANTYLSASDIDAAKNLLLKAKVIMFQGET---P 156 (379)
Q Consensus 84 ~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~--~~g~~~~~-~-~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~---~ 156 (379)
++.|++ +||+++++.+.++.+|+.+++.++ ++| +.++ . ..+++..+.+++++. ..+++++++|+++.. +
T Consensus 205 ~~~L~~-~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~--~~l~~a~ilh~~~~~l~~~ 280 (496)
T PLN02543 205 VLMMNK-ERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNL--AVLKEARMFHFNSEVLTSP 280 (496)
T ss_pred HHHHHH-cCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCH--hHhCCCceEEECChhhcCc
Confidence 999999 999999999888889999998874 445 5543 2 336667788887764 348899999998753 1
Q ss_pred --HHHHHHHHHHhhhhccCCcEEEEecCC--CCCC-------CchhhcccCeEEEeCHHHHHHhhCCCCC------Chh-
Q psy8082 157 --WETTLYCLSKLHVSLESRAKIIVNPSP--AVYP-------LNPIVMILADIICINEQEAEIITDMKIN------NEE- 218 (379)
Q Consensus 157 --~~~~~~~~~~a~~~~~~~~~v~~D~~~--~~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~------~~~- 218 (379)
.+....+++.+ ++.|++|+|||+. .+|. .+..+++++||+++|++|++.|+|.... +++
T Consensus 281 ~~~~a~~~al~~A---k~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~ 357 (496)
T PLN02543 281 SMQSTLFRAIELS---KKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQY 357 (496)
T ss_pred hHHHHHHHHHHHH---HHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchh
Confidence 46778888998 9999999999983 4452 2456788999999999999999986311 111
Q ss_pred -----------------hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccC----CCcCcccCCChhHHHHH
Q psy8082 219 -----------------DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD----HVEYPIESEGVGDCFVG 277 (379)
Q Consensus 219 -----------------~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~----~~~~vvDttGAGDaF~a 277 (379)
+.++ +..+.+.+++.|+||+|++|+++++++. ...++.. .+..+||||||||+|.|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~VVVT~G~~Ga~~~t~~~--~g~v~~~~~~~v~~~~VDTTGAGDAF~A 434 (496)
T PLN02543 358 YAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKLLLVTDGTLRIHYYTPKF--DGVVVGTEDVLITPFTCDRTGSGDAVVA 434 (496)
T ss_pred hhhhhhhhhcccccccCCHHH-HHHHHHCCCCEEEEEcCCCcEEEEECCC--cccccccccccCCCCCcCCCchHHHHHH
Confidence 2223 4567778999999999999999998742 1111110 11224899999999999
Q ss_pred HHHHHHHhc----CCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 278 ALAYYFKAG----QKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 278 g~~~~l~~~----~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
||+++|++. ..+.++++|+++ |+++| ++|++.|+.+++|+.+++.
T Consensus 435 GfL~~Ll~~~~~~~~g~~l~ealrf---------AnAaaAl~vt~~GA~~~lPt~~ev~ 484 (496)
T PLN02543 435 AIMRKLTTCPEMFEDQDVLERQLRF---------AVAAGIISQWTIGAVRGFPTESATQ 484 (496)
T ss_pred HHHHHHHhccccccccccHHHHHHH---------HHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 999999841 016789999999 99999 9999999999999998874
No 20
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.1e-40 Score=314.41 Aligned_cols=269 Identities=24% Similarity=0.352 Sum_probs=231.3
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+|+|++++|++..++++|.+++..........+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 79 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELRE-EGVDT 79 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHH-cCCCc
Confidence 58999999999999999999888888888999999999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
+++...++.+|+.+++.++++|++.+...+++...+++++ . ...+++++++|+++.. .+.++++.+ ++.+.
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~g~ 150 (279)
T cd01942 80 SHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-E--ADPDGLADIVHLSSGP---GLIELAREL---AAGGI 150 (279)
T ss_pred cceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-c--hhhhcccCEEEeCCch---HHHHHHHHH---HHcCC
Confidence 9997666778999999998888888776667666666554 2 2347899999998763 466777777 77899
Q ss_pred EEEEecCCCCC----CCchhhcccCeEEEeCHHHH---HHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe
Q psy8082 176 KIIVNPSPAVY----PLNPIVMILADIICINEQEA---EIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248 (379)
Q Consensus 176 ~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~---~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~ 248 (379)
++++|+++... +.+..+++++|++++|++|+ ..+++.. +.. ..++++.|++|+|++|+++++
T Consensus 151 ~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~-----~~~------~~~~~~~vvvt~G~~G~~~~~ 219 (279)
T cd01942 151 TVSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGLS-----EAE------LASGVRVVVVTLGPKGAIVFE 219 (279)
T ss_pred eEEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCCC-----hHH------HhcCCCEEEEEECCCceEEEE
Confidence 99999986432 23567889999999999999 5555542 211 127899999999999999998
Q ss_pred cCCCceEEEccCC-CcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 249 RDNPRLKTITVDH-VEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 249 ~~~~~~~~~~~~~-~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
++ +.+++|+ + ++++||||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+
T Consensus 220 ~~--~~~~~~~-~~~~~vvDttGAGDaf~a~~i~~l~~---g~~l~~al~~---------a~~~Aa~~~~~~G~ 278 (279)
T cd01942 220 DG--EEVEVPA-VPAVKVVDTTGAGDAFRAGFLYGLLR---GYDLEESLRL---------GNLAASLKVERRGA 278 (279)
T ss_pred CC--ceEEccC-cCcCCCcCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcccCC
Confidence 76 5788888 6 889999999999999999999999 9999999999 99999 99999996
No 21
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.7e-40 Score=317.38 Aligned_cols=277 Identities=19% Similarity=0.343 Sum_probs=234.2
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+++|++++|++. .++ ......+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 2 ~~~il~iG~~~iD~~~------~~~-----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~-~gI 69 (304)
T PRK09434 2 MNKVWVLGDAVVDLIP------EGE-----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQD-EGV 69 (304)
T ss_pred CCcEEEecchheeeec------CCC-----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHH-cCC
Confidence 4589999999999973 221 2456779999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCC-----CHHHHHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYCLSK 166 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~~~~~ 166 (379)
++.++...++.+|+.+++.++++|+|++.... +++..+++++++. +++++++|+++.. ..+...++++.
T Consensus 70 ~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (304)
T PRK09434 70 DTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLPP----FRQGEWLHLCSIALSAEPSRSTTFEAMRR 145 (304)
T ss_pred CCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhhh----hcCCCEEEEccccccCchHHHHHHHHHHH
Confidence 99999888888999999999888999865433 4445566766653 6689999997532 23556678888
Q ss_pred hhhhccCCcEEEEecCCC--CC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCCEEE
Q psy8082 167 LHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVI 236 (379)
Q Consensus 167 a~~~~~~~~~v~~D~~~~--~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vi 236 (379)
+ ++.+.++++|++.. .| +.++++++++|++++|++|+..+++. .+..++++.+.+ .+++.++
T Consensus 146 ~---~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~-----~~~~~~~~~l~~~~g~~~vv 217 (304)
T PRK09434 146 I---KAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT-----SQLEDAIYALADRYPIALLL 217 (304)
T ss_pred H---HHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC-----CCHHHHHHHHHhhcCCcEEE
Confidence 8 88999999999743 23 22345688999999999999999986 366778888877 6899999
Q ss_pred EEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCC------CHHHHHhhccCCcccHHHHH
Q psy8082 237 ITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGG------NLDSCRLRNGRGILKELQCL 310 (379)
Q Consensus 237 vT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~------~l~~A~~~~~~~~~~~~A~~ 310 (379)
||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||++++++ |+ ++++|+++ |++
T Consensus 218 vt~G~~G~~~~~~~--~~~~~~~-~~~~~vDttGAGD~f~ag~~~~l~~---g~~~~~~~~~~~a~~~---------a~~ 282 (304)
T PRK09434 218 VTLGAEGVLVHTRG--QVQHFPA-PSVDPVDTTGAGDAFVAGLLAGLSQ---AGLWTDEAELAEIIAQ---------AQA 282 (304)
T ss_pred EEecCCceEEEeCC--ceeEeCC-CCCCCCcCCCchHHHHHHHHHHHHc---CCCccchHHHHHHHHH---------HHH
Confidence 99999999999876 5789998 8899999999999999999999999 96 89999999 999
Q ss_pred HH-HHHhccccCCCCCChhH
Q psy8082 311 VA-RRVQLEGKNSSERKSNS 329 (379)
Q Consensus 311 ~A-~~v~~~G~~~~~p~~~~ 329 (379)
+| +++++.|+..++|+.++
T Consensus 283 ~Aa~~v~~~g~~~~~~~~~~ 302 (304)
T PRK09434 283 CGALATTAKGAMTALPNRQE 302 (304)
T ss_pred HHHHHHcccCCcCCCCChHH
Confidence 99 99999999989998755
No 22
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.7e-40 Score=315.28 Aligned_cols=276 Identities=22% Similarity=0.280 Sum_probs=233.0
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
||+|+|++++|++...+ ++.....+....+||++.|+|.++++||.++.++|.+|+|.+|+.+.+.|++ .||++
T Consensus 1 ~i~~iG~~~iD~~~~~~-----~~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~-~gi~~ 74 (294)
T cd01166 1 DVVTIGEVMVDLSPPGG-----GRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRR-EGVDT 74 (294)
T ss_pred CeEEechhheeeecCCC-----CccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH-cCCCC
Confidence 68999999999986533 3345566778889999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCCC------HHHHHHHHHHh
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSKL 167 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~~~~~~a 167 (379)
+++...++.+|+.+++.++++|+|++..+. ++...++.++++. ..+++++++|+++..+ .+.+.++++.+
T Consensus 75 ~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
T cd01166 75 SHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDE--AALAGADHLHLSGITLALSESAREALLEALEAA 152 (294)
T ss_pred ceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCH--HHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHH
Confidence 999877888999999999888888877664 3445666666552 3478999999998653 26777888888
Q ss_pred hhhccCCcEEEEecCCCC--C------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEe
Q psy8082 168 HVSLESRAKIIVNPSPAV--Y------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITL 239 (379)
Q Consensus 168 ~~~~~~~~~v~~D~~~~~--~------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~ 239 (379)
++.+.++++||.... | +....+++++|++++|++|++.+++... .++..+.++.+ +++++.++||.
T Consensus 153 ---~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~--~~~~~~~~~~l-~~g~~~viit~ 226 (294)
T cd01166 153 ---KARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDED--PTDAAERALAL-ALGVKAVVVKL 226 (294)
T ss_pred ---HHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCC--chhHHHHHHhh-cCCccEEEEEE
Confidence 888999999997532 1 2345678899999999999999998642 23455555556 68999999999
Q ss_pred cCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 240 GGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 240 G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
|++|+++++++ +.+++|+ ++.+++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.
T Consensus 227 G~~G~~~~~~~--~~~~~~~-~~~~~vdt~GAGD~f~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~i~~~ 291 (294)
T cd01166 227 GAEGALVYTGG--GRVFVPA-YPVEVVDTTGAGDAFAAGFLAGLLE---GWDLEEALRF---------ANAAAALVVTRP 291 (294)
T ss_pred cCCceEEEECC--ceEEeCC-CCcccccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhcC
Confidence 99999999876 5789998 7889999999999999999999999 9999999999 99999 999999
Q ss_pred cc
Q psy8082 319 GK 320 (379)
Q Consensus 319 G~ 320 (379)
|+
T Consensus 292 G~ 293 (294)
T cd01166 292 GD 293 (294)
T ss_pred CC
Confidence 85
No 23
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=6.9e-40 Score=312.91 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=243.1
Q ss_pred EECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccce
Q psy8082 19 VVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (379)
Q Consensus 19 viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i 98 (379)
|.=++.+|+++.++++| +++.+.......++||+++|+|.++++||.++.++|.+|+| +|+.+++.|++ .||+++++
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~-~gId~~~~ 80 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLRE-EGIKTDFV 80 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHH-CCCcceEE
Confidence 33488999999999998 88899999999999999999999999999999999999999 69999999999 99999988
Q ss_pred eeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH----HhhccCccEEEEeCCC----CHHHHHHHHHHhhhh
Q psy8082 99 WLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGET----PWETTLYCLSKLHVS 170 (379)
Q Consensus 99 ~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~----~~~l~~~~~v~~~~~~----~~~~~~~~~~~a~~~ 170 (379)
+.. ..|+.++.+++++|+++++...+ ..+++++++.+ .+.+++++++|+++.. +.+.+..+++.+
T Consensus 81 ~~~--~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~--- 153 (304)
T TIGR03828 81 RVP--GETRINVKIKEPSGTETKLNGPG--PEISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALA--- 153 (304)
T ss_pred ECC--CCCeeeEEEEeCCCCEEEEECCC--CCCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHH---
Confidence 765 35777778888888887765444 34566655532 2247899999998743 457788899998
Q ss_pred ccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecC
Q psy8082 171 LESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~ 250 (379)
++.+.++++|++... ..+.+...+|++++|++|++.+++....+.+++.++++.+.+++++.||||+|++|+++++++
T Consensus 154 ~~~~~~v~~D~~~~~--~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 231 (304)
T TIGR03828 154 REKGAKVILDTSGEA--LRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADGALLVTKE 231 (304)
T ss_pred HHcCCEEEEECChHH--HHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCC
Confidence 899999999997531 122233457899999999999999866666778888888999999999999999999999876
Q ss_pred CCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhH
Q psy8082 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNS 329 (379)
Q Consensus 251 ~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~ 329 (379)
+.+++|+ ++++++|||||||+|.|||+++|++ |+++++|+++ |+++| ++|++.|+. +|+.++
T Consensus 232 --~~~~~~~-~~~~vvDttGAGDaF~a~~l~~l~~---g~~~~~a~~~---------a~~~Aa~~~~~~G~~--~p~~~~ 294 (304)
T TIGR03828 232 --GALFAQP-PKGEVVSTVGAGDSMVAGFLAGLES---GLSLEEALRL---------AVAAGSAAAFSEGTG--LPDPED 294 (304)
T ss_pred --ceEEEeC-CCccccCCcChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCcCCC--CCCHHH
Confidence 4678888 8889999999999999999999999 9999999999 99999 999999974 899877
Q ss_pred HHHHHHH
Q psy8082 330 AFVSWFK 336 (379)
Q Consensus 330 ~~~~~~~ 336 (379)
+ +.++.
T Consensus 295 ~-~~~~~ 300 (304)
T TIGR03828 295 I-EELLP 300 (304)
T ss_pred H-HHHHh
Confidence 6 45554
No 24
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=1.7e-39 Score=311.96 Aligned_cols=293 Identities=22% Similarity=0.263 Sum_probs=233.9
Q ss_pred CCCCcEEEECccccceecc--cCCC-C-CCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHH
Q psy8082 12 KDEADIVVVGSCLVEFITY--VQTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEEL 87 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~--~~~~-p-~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l 87 (379)
++.++|+++|++++|.+.. ++++ | .+............+|| +.|+|.++++||.++.++|.+|+|.+|+.+++.|
T Consensus 5 ~~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l 83 (315)
T TIGR02198 5 FKGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALL 83 (315)
T ss_pred hCCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHH
Confidence 4578999999999999876 4443 2 23333344566778898 7999999999999999999999999999999999
Q ss_pred hhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHH----HHHHHHhhccCccEEEEeCC----CCHHH
Q psy8082 88 RKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS----DIDAAKNLLLKAKVIMFQGE----TPWET 159 (379)
Q Consensus 88 ~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~----~l~~~~~~l~~~~~v~~~~~----~~~~~ 159 (379)
++ .||++.++...++.+|+.++.+++.++.. +.........++.+ .++.....++++|++|+++. .+.+.
T Consensus 84 ~~-~gI~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 161 (315)
T TIGR02198 84 AE-EGIDTSGLIRDKDRPTTTKTRVLARNQQL-LRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRV 161 (315)
T ss_pred HH-CCCCcceEEECCCCCcceEEEEEcCCeEE-EEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHHH
Confidence 99 99999988777777899998888764322 21111222234432 23333345889999999753 45778
Q ss_pred HHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCCEEEEE
Q psy8082 160 TLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIIT 238 (379)
Q Consensus 160 ~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vivT 238 (379)
...+++.+ +++++++++||++..+ ..++++|++++|++|++.+++. ..+.++..++++.+.+ +|++.++||
T Consensus 162 ~~~~~~~a---~~~g~~v~~D~~~~~~----~~~~~~d~l~~n~~E~~~l~~~-~~~~~~~~~~~~~l~~~~g~~~vivT 233 (315)
T TIGR02198 162 VQEVIAAA---RKHGKPVLVDPKGKDF----SRYRGATLITPNRKEAEAAVGA-CDTEAELVQAAEKLLEELDLEALLVT 233 (315)
T ss_pred HHHHHHHH---HhcCCCEEEeCCCcch----hhcCCCcEECCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 88999999 9999999999986532 4578899999999999999983 3344567777777764 689999999
Q ss_pred ecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 239 LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 239 ~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+|++|++++++++ +.+++|+ ++++++|||||||+|.|||++++++ |+++++|+++ |+++| ++|++
T Consensus 234 ~G~~G~~~~~~~~-~~~~~~~-~~~~vvdt~GAGDaf~ag~~~~l~~---g~~~~~al~~---------A~~~aa~~~~~ 299 (315)
T TIGR02198 234 RSEKGMTLFTREG-EPIHIPA-QAREVYDVTGAGDTVIATLALALAA---GASLEEACRL---------ANAAAGVVVGK 299 (315)
T ss_pred cCCCCeEEEecCC-CeEEecC-CCCCCCCCcCccHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHhhhhhcc
Confidence 9999999998543 5788998 7889999999999999999999999 9999999999 99999 99999
Q ss_pred cccCCCCCChhHHH
Q psy8082 318 EGKNSSERKSNSAF 331 (379)
Q Consensus 318 ~G~~~~~p~~~~~~ 331 (379)
.|+.. ++.+++.
T Consensus 300 ~G~~~--~~~~~~~ 311 (315)
T TIGR02198 300 LGTAT--VSPAELA 311 (315)
T ss_pred CCCCC--CCHHHHH
Confidence 99863 5666653
No 25
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=7.3e-40 Score=311.08 Aligned_cols=277 Identities=18% Similarity=0.229 Sum_probs=229.3
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
.|+|+|++++|++..++++|.+++..........+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~-~gId~ 79 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQS-RGIDI 79 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHH-cCCce
Confidence 48999999999999999999988877777888999999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCC-
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR- 174 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~- 174 (379)
.++...++..++.++++.+++|+|+++.+.++...++.++++... +++++++|+++..+ +...++++.+ ++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~---~~~~~ 153 (290)
T cd01939 80 SHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKID--LTQYGWIHFEGRNP-DETLRMMQHI---EEHNN 153 (290)
T ss_pred eeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhh--hccCCEEEEeccCH-HHHHHHHHHH---HHhcC
Confidence 988655554555567777778899888777777888888887643 68999999998765 3445666666 5555
Q ss_pred ------cEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHH--HhcCCCEEEEEecCCceEE
Q psy8082 175 ------AKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKL--LDMKCNTVIITLGGSGVVY 246 (379)
Q Consensus 175 ------~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l--~~~g~~~vivT~G~~G~~~ 246 (379)
+++++|+.... +....+++++|++++|++|++.+ +.. +..+.+..+ ...+++.++||+|++|+++
T Consensus 154 ~~~~~~~~v~~d~~~~~-~~~~~~l~~~di~~~n~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~vvvt~G~~G~~~ 226 (290)
T cd01939 154 RRPEIRITISVEVEKPR-EELLELAAYCDVVFVSKDWAQSR-GYK-----SPEECLRGEGPRAKKAALLVCTWGDQGAGA 226 (290)
T ss_pred cCCCcceEEEEEeccCc-hhhhhHHhhCCEEEEEhHHHHhc-CcC-----CHHHHHHhhhhhccCCcEEEEEcccCCeEE
Confidence 67888887543 33458899999999999998764 532 223333332 2458999999999999999
Q ss_pred EecCCCceEEEccCCCc-CcccCCChhHHHHHHHHHHHHhcCCCCC-HHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 247 ATRDNPRLKTITVDHVE-YPIESEGVGDCFVGALAYYFKAGQKGGN-LDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~vvDttGAGDaF~ag~~~~l~~~~~g~~-l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+.+++ +.+++|+ ++. ++||||||||+|.|||++++++ |++ +++|+++ |+++| +++++.|.
T Consensus 227 ~~~~~-~~~~~~~-~~~~~vvDt~GAGDsf~agfl~~l~~---g~~~~~~a~~~---------a~a~aa~~i~~~G~ 289 (290)
T cd01939 227 LGPDG-EYVHSPA-HKPIRVVDTLGAGDTFNAAVIYALNK---GPDDLSEALDF---------GNRVASQKCTGVGF 289 (290)
T ss_pred EcCCC-CEEEecC-CCCCCcccCCCchHHHHHHHHHHHHc---CCccHHHHHHH---------HHHHHHHHHhhhcC
Confidence 88754 5788998 654 6999999999999999999999 995 9999999 99999 99999883
No 26
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9.8e-40 Score=309.35 Aligned_cols=281 Identities=26% Similarity=0.315 Sum_probs=235.8
Q ss_pred EEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCccc
Q psy8082 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (379)
Q Consensus 17 i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~ 96 (379)
|+++|++++|+++.+++.|.+++.... .....+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||++.
T Consensus 2 v~~~G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~-~gI~~~ 79 (288)
T cd01941 2 IVVIGAANIDLRGKVSGSLVPGTSNPG-HVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEK-AGLNVR 79 (288)
T ss_pred eEEEEeEEEeeeecccCccccCCCCCe-eEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHH-cCCccc
Confidence 789999999999999987777665543 578899999999999999999999999999999999999999999 999999
Q ss_pred ceeeeCCcCceeEEEEEcCCCceeEEe-cCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 97 YIWLLQDVTTGVCSKVISNKGTHQTNI-IPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 97 ~i~~~~~~~T~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
.+. .++.+|+.++.+++.+|++++.. .......++++.++.....+..++++++++..+.+....+++.+ ++.+.
T Consensus 80 ~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~~~~ 155 (288)
T cd01941 80 GIV-FEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPIVVDANLPEEALEYLLALA---AKHGV 155 (288)
T ss_pred eee-eCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhh---hhcCC
Confidence 887 56778999999999889988733 23333455655555545568899999999888888888999999 88899
Q ss_pred EEEEecCCCC-CCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec--CCC
Q psy8082 176 KIIVNPSPAV-YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR--DNP 252 (379)
Q Consensus 176 ~v~~D~~~~~-~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~--~~~ 252 (379)
++++||.... +.....+++++|++++|++|+..+++....+.+...+.++.+.+.+++.+++|+|++|++++++ ++
T Consensus 156 ~v~~d~~~~~~~~~~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~- 234 (288)
T cd01941 156 PVAFEPTSAPKLKKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGV- 234 (288)
T ss_pred cEEEEccchHHhccchhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCc-
Confidence 9999987432 1111158899999999999999999876444344455667778889999999999999999987 33
Q ss_pred ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 253 RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 253 ~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
..+++|++++.++||||||||+|.|||++++++ |+++++|+++ |+++| ++|+
T Consensus 235 ~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~---g~~~~~al~~---------a~~~Aa~~~~ 287 (288)
T cd01941 235 ETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE---GMSLDDSLRF---------AQAAAALTLE 287 (288)
T ss_pred eeEEecCCCCccceeCCCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhc
Confidence 568888723778999999999999999999999 9999999999 99999 9886
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1.5e-39 Score=310.59 Aligned_cols=285 Identities=24% Similarity=0.303 Sum_probs=231.7
Q ss_pred cEEEECccccceeccc--CCCCCCCC--ceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 16 DIVVVGSCLVEFITYV--QTLPKPEE--TVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~--~~~p~~~~--~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
+|+++|+.++|+++.+ +++|.+.. ..........+|| +.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~-~ 78 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEK-E 78 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHh-C
Confidence 6899999999998874 45433222 2334456778999 689999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHH----HHHHhhccCccEEEEeCC----CCHHHHHHH
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI----DAAKNLLLKAKVIMFQGE----TPWETTLYC 163 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l----~~~~~~l~~~~~v~~~~~----~~~~~~~~~ 163 (379)
||+++++ ..++.+|+.++.++++ +++.+.........++.+.. +.....++++|++|+++. .+.+....+
T Consensus 79 gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~ 156 (304)
T cd01172 79 GIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEAL 156 (304)
T ss_pred CCCcceE-ecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHH
Confidence 9999985 4566678888887775 45555444444445554432 222334899999999753 456788889
Q ss_pred HHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCCEEEEEecCC
Q psy8082 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLGGS 242 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vivT~G~~ 242 (379)
++.+ ++.+.++++|++...+ ..++++|++++|++|++.+++....+.++..+.++.+.+ .|++.++||+|++
T Consensus 157 ~~~a---~~~~~~v~~D~~~~~~----~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~ 229 (304)
T cd01172 157 IAAA---RELGIPVLVDPKGRDY----SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEE 229 (304)
T ss_pred HHHH---HhcCCCEEEeCCCcch----hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 9999 8899999999986543 567899999999999999999865555677778887764 6899999999999
Q ss_pred ceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 243 GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 243 G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
|++++++++ +.+++|+ +++++||||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.|+.
T Consensus 230 G~~~~~~~~-~~~~~~~-~~~~vvdttGAGDaf~ag~i~~l~~---g~~~~~al~~---------a~a~Aa~~~~~~g~~ 295 (304)
T cd01172 230 GMTLFERDG-EVQHIPA-LAKEVYDVTGAGDTVIATLALALAA---GADLEEAAFL---------ANAAAGVVVGKVGTA 295 (304)
T ss_pred ccEEEcCCC-cEEEecC-CCCCCCCCcCccHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHhheeeecCCCC
Confidence 999998333 6899999 8899999999999999999999999 9999999999 99999 999999987
Q ss_pred CCCC
Q psy8082 322 SSER 325 (379)
Q Consensus 322 ~~~p 325 (379)
+.+|
T Consensus 296 ~~~~ 299 (304)
T cd01172 296 PVTP 299 (304)
T ss_pred CcCH
Confidence 6544
No 28
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=7.4e-40 Score=311.23 Aligned_cols=271 Identities=23% Similarity=0.319 Sum_probs=226.9
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
||+|+|++++|++...++. .......+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||++
T Consensus 1 ~ilviG~~~~D~~~~~~~~--------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~-~gi~~ 71 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKE-AGVDT 71 (295)
T ss_pred CEEEEcceeEEEecCCCCC--------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHH-cCCCc
Confidence 6999999999998755432 44667889999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCH-HHHHHHHhhccCccEEEEeCCC-----CHHHHHHHHHHhhh
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSA-SDIDAAKNLLLKAKVIMFQGET-----PWETTLYCLSKLHV 169 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~~~~~a~~ 169 (379)
.++.+.++.+|+++++.++++|+|.+....++...... .++. .+.+++++++|+++.. ..+.+.++++.+
T Consensus 72 ~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-- 147 (295)
T cd01167 72 RGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELN--PDLLSEADILHFGSIALASEPSRSALLELLEAA-- 147 (295)
T ss_pred hheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCC--hhHhccCCEEEEechhhccchHHHHHHHHHHHH--
Confidence 99986778899999999988899988766554322111 1111 1237899999997531 235677888888
Q ss_pred hccCCcEEEEecCCC--CCC-------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEec
Q psy8082 170 SLESRAKIIVNPSPA--VYP-------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240 (379)
Q Consensus 170 ~~~~~~~v~~D~~~~--~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G 240 (379)
++.+.++++||+.. .|. .++.+++++|++++|++|+..+++.. +..+..+.+.+++++.++||+|
T Consensus 148 -~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~-----~~~~~~~~l~~~g~~~vvvt~G 221 (295)
T cd01167 148 -KKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEE-----DPEEIAALLLLFGLKLVLVTRG 221 (295)
T ss_pred -HHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCC-----CHHHHHHHHhhcCCCEEEEecC
Confidence 88999999999743 231 24567899999999999999999863 4456667788899999999999
Q ss_pred CCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCC-------CHHHHHhhccCCcccHHHHHHH-
Q psy8082 241 GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGG-------NLDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 241 ~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~-------~l~~A~~~~~~~~~~~~A~~~A- 312 (379)
++|+++++++ +.+++|+ ++.+++|||||||+|+|||+++|++ |+ ++++|+++ |+++|
T Consensus 222 ~~G~~~~~~~--~~~~~~a-~~~~vvDttGAGD~f~a~~~~~l~~---g~~~~~~~~~~~~a~~~---------a~~~aa 286 (295)
T cd01167 222 ADGALLYTKG--GVGEVPG-IPVEVVDTTGAGDAFVAGLLAQLLS---RGLLALDEDELAEALRF---------ANAVGA 286 (295)
T ss_pred CcceEEEECC--cceeeCC-CCcceeeCCCccHHHHHHHHHHHHh---CCcccccHHHHHHHHHH---------HHHhhH
Confidence 9999999876 5789999 8899999999999999999999999 99 99999999 99999
Q ss_pred HHHhcccc
Q psy8082 313 RRVQLEGK 320 (379)
Q Consensus 313 ~~v~~~G~ 320 (379)
++|++.|+
T Consensus 287 ~~~~~~G~ 294 (295)
T cd01167 287 LTCTKAGA 294 (295)
T ss_pred HHhcccCC
Confidence 99999986
No 29
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.4e-39 Score=312.90 Aligned_cols=292 Identities=15% Similarity=0.180 Sum_probs=234.9
Q ss_pred CCCcEEEEC-ccccceecccC-------CCCCCCCce-------------e---------cCcEEEecCChHHHHHHHHH
Q psy8082 13 DEADIVVVG-SCLVEFITYVQ-------TLPKPEETV-------------K---------GYHFEQRFSGKGANQCVAAA 62 (379)
Q Consensus 13 ~~~~i~viG-~~~iD~i~~~~-------~~p~~~~~~-------------~---------~~~~~~~~GG~a~nvA~~l~ 62 (379)
+.++|+.+| +.++|+...++ .+++.+..+ . ....+..+||++.|++++++
T Consensus 18 ~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la 97 (367)
T PLN02379 18 RPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLS 97 (367)
T ss_pred CCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHH
Confidence 567899999 99999998875 122111111 0 11366789999999999998
Q ss_pred H-CCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHh
Q psy8082 63 K-LRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKN 141 (379)
Q Consensus 63 ~-LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~ 141 (379)
+ ||.++.++|++|+|.+|+.+++.|++ .||+++.+.. .+.+|++++++++++|+|++..+.++...++++++.. +
T Consensus 98 ~~LG~~~~~ig~VG~D~~G~~~~~~L~~-~GI~~~~~~~-~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~--~ 173 (367)
T PLN02379 98 AGFGVSTGIIGACGDDEQGKLFVSNMGF-SGVDLSRLRA-KKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK--E 173 (367)
T ss_pred HhcCCCEEEEEEeCCChhHHHHHHHHHH-cCCCccCccc-CCCCCceEEEEECCCCCccccCCccccccCChhHCCH--H
Confidence 6 99999999999999999999999999 9999888754 3458999999999999999876667777777777654 2
Q ss_pred hccCccEEEEeCC-CCHHHHHHHHHHhhhhccCCcEEEEecCCCC-----CCCchhhc--ccCeEEEeCHHHHHHhhCCC
Q psy8082 142 LLLKAKVIMFQGE-TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVM--ILADIICINEQEAEIITDMK 213 (379)
Q Consensus 142 ~l~~~~~v~~~~~-~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-----~~~~~~ll--~~~dil~~N~~E~~~l~~~~ 213 (379)
.+++++++|++.. .+.+.+.++++.+ +++++++++|++... ++.+.+++ +++|++++|++|+..+++..
T Consensus 174 ~~~~~~~v~v~~~~~~~~~~~~~~~~A---~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~ 250 (367)
T PLN02379 174 DFKGSKWLVLRYGFYNLEVIEAAIRLA---KQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGE 250 (367)
T ss_pred HHhcCCEEEEEcccCCHHHHHHHHHHH---HHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCC
Confidence 4889999999832 3578889999999 999999999998632 23344555 48999999999999998742
Q ss_pred CCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCC-cCcccCCChhHHHHHHHHHHHHhcCCCCCH
Q psy8082 214 INNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYFKAGQKGGNL 292 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~-~~vvDttGAGDaF~ag~~~~l~~~~~g~~l 292 (379)
.. .+.+++.+ +++.+++.++||+|++|+++++++ +.+++|+ ++ .++||||||||+|+|||+|++++ |+++
T Consensus 251 ~~--~~~~~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~--~~~~v~a-~~~~~vVDTtGAGDaFaagfl~gl~~---G~~l 321 (367)
T PLN02379 251 QE--SDPEAALE-FLAKYCNWAVVTLGSKGCIARHGK--EVVRVPA-IGETNAVDATGAGDLFASGFLYGLIK---GLSL 321 (367)
T ss_pred CC--CCHHHHHH-HHHhcCCEEEEEECCCCeEEEECC--EEEEecC-CCCCCcccCCChhHHHHHHHHHHHHC---CCCH
Confidence 11 23444444 455689999999999999999876 6888998 65 58999999999999999999999 9999
Q ss_pred HHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhH
Q psy8082 293 DSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNS 329 (379)
Q Consensus 293 ~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~ 329 (379)
++|+++ |+.+| .+|++.|+....+.+++
T Consensus 322 ~~a~~~---------g~~aAa~vi~~~G~~~~~~~~~~ 350 (367)
T PLN02379 322 EECCKV---------GACSGGSVVRALGGEVTPENWQW 350 (367)
T ss_pred HHHHHH---------HHHHHHHHHhccCCCCChHHHHH
Confidence 999999 99999 99999998754433333
No 30
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=1.8e-38 Score=301.31 Aligned_cols=276 Identities=20% Similarity=0.252 Sum_probs=236.1
Q ss_pred EEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCccc
Q psy8082 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (379)
Q Consensus 17 i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~ 96 (379)
..++|+.++|.++.++++| .++.+........+||+++|+|.++++||.++.++|.+|+| +|+.+++.|++ .||++.
T Consensus 3 ~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~-~gi~~~ 79 (289)
T cd01164 3 YTVTLNPAIDLTIELDQLQ-PGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKE-EGIPDD 79 (289)
T ss_pred EEEecChHHeEEEEcCccc-CCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHH-cCCCce
Confidence 4678999999999999996 46788888999999999999999999999999999999999 89999999999 999999
Q ss_pred ceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH----HhhccCccEEEEeCCCCH----HHHHHHHHHhh
Q psy8082 97 YIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGETPW----ETTLYCLSKLH 168 (379)
Q Consensus 97 ~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~----~~~l~~~~~v~~~~~~~~----~~~~~~~~~a~ 168 (379)
+++.. .+|+..+.+.+.+|+++.+... ...+++++++.+ .+.+++++++|+++..+. +....+++.+
T Consensus 80 ~~~~~--~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~- 154 (289)
T cd01164 80 FVEVA--GETRINVKIKEEDGTETEINEP--GPEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLA- 154 (289)
T ss_pred EEECC--CCCEEEEEEEeCCCCEEEEeCC--CCCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHH-
Confidence 88654 4577777777776766665433 345666666543 234688999999987654 6788888888
Q ss_pred hhccCCcEEEEecCCCCCCCchhhc-ccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 169 VSLESRAKIIVNPSPAVYPLNPIVM-ILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 169 ~~~~~~~~v~~D~~~~~~~~~~~ll-~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
++.+.++++|++... ..+.+ +.+|++++|++|++.+++....+.++..++++.+.+++++.++||+|++|++++
T Consensus 155 --~~~~~~i~~D~~~~~---~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~ 229 (289)
T cd01164 155 --REKGARVILDTSGEA---LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLV 229 (289)
T ss_pred --HHcCCeEEEECChHH---HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEE
Confidence 888999999997531 22344 799999999999999999876666788888899999999999999999999998
Q ss_pred ecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
.++ +.+++++ ++.+++|||||||+|+|||++++++ |+++++|+++ |+++| ++|++.|+
T Consensus 230 ~~~--~~~~~~~-~~~~vvDttGAGDaf~a~~i~~l~~---g~~~~~a~~~---------A~~~Aa~~~~~~G~ 288 (289)
T cd01164 230 TKD--GVYRASP-PKVKVVSTVGAGDSMVAGFVAGLAQ---GLSLEEALRL---------AVAAGSATAFSPGT 288 (289)
T ss_pred cCC--cEEEecC-CCccccCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCccC
Confidence 876 5788888 8889999999999999999999999 9999999999 99999 99999985
No 31
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.9e-39 Score=299.58 Aligned_cols=263 Identities=21% Similarity=0.234 Sum_probs=220.8
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+|+|++++|++..++++|.+++......+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ ++++
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~--~~~~ 78 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES--GGDK 78 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh--cCCc
Confidence 68999999999999999998888888888999999999999999999999999999999999999999999987 6667
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
..+.. .+..|+.++++++++|+|+++...... +++++. +.++++|++|+++..+ ..++++.+ ++.+
T Consensus 79 ~~~~~-~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~a---~~~~- 144 (265)
T cd01947 79 HTVAW-RDKPTRKTLSFIDPNGERTITVPGERL----EDDLKW--PILDEGDGVFITAAAV---DKEAIRKC---RETK- 144 (265)
T ss_pred ceEEe-cCCCCceEEEEECCCCcceEEecCCCC----cccCCH--hHhccCCEEEEecccc---cHHHHHHH---HHhC-
Confidence 76764 456899999999989999887544322 122211 2378999999998652 34566777 6654
Q ss_pred EEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCce
Q psy8082 176 KIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254 (379)
Q Consensus 176 ~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~ 254 (379)
.+++|+..... ..+.++++++|++++|++|+..+++ .+.+.+.+++.++||+|++|+++++++ +.
T Consensus 145 ~~~~d~~~~~~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~~~~~~~~viit~G~~Ga~~~~~~--~~ 210 (265)
T cd01947 145 LVILQVTPRVRVDELNQALIPLDILIGSRLDPGELVV------------AEKIAGPFPRYLIVTEGELGAILYPGG--RY 210 (265)
T ss_pred CeEeccCccccchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHHHhccCCEEEEEeCCCCeEEEECC--ee
Confidence 56788875432 2456788999999999999988753 345667899999999999999999876 58
Q ss_pred EEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 255 ~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
+++|+ ++++++|||||||+|.|||++++++ |+++++|+++ |+++| +++++.|++
T Consensus 211 ~~~~~-~~~~vvDttGAGDaF~ag~l~~l~~---g~~~~~al~~---------a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 211 NHVPA-KKAKVPDSTGAGDSFAAGFIYGLLK---GWSIEEALEL---------GAQCGAICVSHFGPY 265 (265)
T ss_pred EECCC-CCCCCCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhccCCC
Confidence 89998 7889999999999999999999999 9999999999 99999 999999963
No 32
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=5e-38 Score=300.22 Aligned_cols=285 Identities=19% Similarity=0.241 Sum_probs=240.1
Q ss_pred ccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceeee
Q psy8082 22 SCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLL 101 (379)
Q Consensus 22 ~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~ 101 (379)
++.+|++..++++ .+++..........+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++ .||++.+++..
T Consensus 7 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~-~gI~~~~i~~~ 83 (303)
T TIGR03168 7 NPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAE-EGIKNDFVEVK 83 (303)
T ss_pred chHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHH-cCCCceEEECC
Confidence 6679999999996 667788888889999999999999999999999999999999 79999999999 99999988754
Q ss_pred CCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH----hhccCccEEEEeCC----CCHHHHHHHHHHhhhhccC
Q psy8082 102 QDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGE----TPWETTLYCLSKLHVSLES 173 (379)
Q Consensus 102 ~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~----~~l~~~~~v~~~~~----~~~~~~~~~~~~a~~~~~~ 173 (379)
..|++++.+.+++|++..+.+.+ ..+++++++.+. +.+++++++|+++. .+.+....+++.+ +++
T Consensus 84 --~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~ 156 (303)
T TIGR03168 84 --GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIA---RKR 156 (303)
T ss_pred --CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHH---HHC
Confidence 35777777777778776654433 357777665432 34889999999864 3567788899999 899
Q ss_pred CcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy8082 174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (379)
Q Consensus 174 ~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~ 253 (379)
+.++++|++.. ...+.+..++|++++|++|+..+++.+..+.++..++++.+.+++++.++||+|.+|+++++++ +
T Consensus 157 g~~v~~D~~~~--~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~--~ 232 (303)
T TIGR03168 157 GAKVILDTSGE--ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALLVTKE--G 232 (303)
T ss_pred CCEEEEECCcH--HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCC--c
Confidence 99999999853 1222344579999999999999999876666677888888989999999999999999999887 5
Q ss_pred eEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHHH
Q psy8082 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAFV 332 (379)
Q Consensus 254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~ 332 (379)
.+++|+ ++.+++|||||||+|.|+|++++++ |+++++|+++ |+.+| ++|++.|+. .|+.+++.
T Consensus 233 ~~~~~~-~~~~~vDttGAGD~F~a~~~~~l~~---g~~i~~a~~~---------A~~~aa~~~~~~G~~--~~~~~~~~- 296 (303)
T TIGR03168 233 ALKATP-PKVEVVNTVGAGDSMVAGFLAGLAR---GLSLEEALRF---------AVAAGSAAAFSPGTG--LPDPEDVE- 296 (303)
T ss_pred eEEeeC-CcceeecCcCHHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCcC--CCCHHHHH-
Confidence 788998 8889999999999999999999999 9999999999 99999 999999984 68888763
Q ss_pred HHHH
Q psy8082 333 SWFK 336 (379)
Q Consensus 333 ~~~~ 336 (379)
+++.
T Consensus 297 ~~~~ 300 (303)
T TIGR03168 297 ELLD 300 (303)
T ss_pred HHHh
Confidence 4443
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=8e-38 Score=300.23 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=242.5
Q ss_pred EEEE-CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 17 IVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 17 i~vi-G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
|+++ =++++|++..++++| +++.........++||++.|+|.++++||.++.++|.+|+|.+|+. .+.|++ +||++
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~-~gv~~ 81 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSE-LGIAN 81 (312)
T ss_pred EEEEecChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHH-cCCCc
Confidence 6655 499999999999997 6888889999999999999999999999999999999999999986 688999 99998
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH----HhhccCccEEEEeCCCC----HHHHHHHHHHh
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGETP----WETTLYCLSKL 167 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~----~~~l~~~~~v~~~~~~~----~~~~~~~~~~a 167 (379)
.+++ .+ .+|+.++.+++.+|+++++...+ ..+++.+++.+ .+.++++|++|+++..+ .+...++++.+
T Consensus 82 ~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a 157 (312)
T PRK09513 82 RFQV-VQ-GRTRINVKLTEKDGEVTDFNFSG--FEVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRL 157 (312)
T ss_pred cEEE-CC-CCCEEEEEEEeCCCcEEEEeCCC--CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 7664 33 36888888888888888665544 34666655432 24588999999998654 46778888888
Q ss_pred hhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 168 HVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 168 ~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
++.+.++++|++... ....+....+++++|++|+..+++.+..+.+++.++++.+.++|++.++||+|.+|++++
T Consensus 158 ---~~~g~~v~~D~~~~~--~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 232 (312)
T PRK09513 158 ---RSQCPCIIFDSSREA--LVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVISLGAEGALWV 232 (312)
T ss_pred ---HhcCCEEEEECChHH--HHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEE
Confidence 888999999998532 223345578899999999999999876666677788888989999999999999999998
Q ss_pred ecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCC
Q psy8082 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERK 326 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~ 326 (379)
.++ +.++.++ +.++++|||||||+|+|||++++++ |+++++|+++ |+++| +++++.| .+.|+
T Consensus 233 ~~~--~~~~~~~-~~~~~vDttGAGDaf~ag~i~~l~~---g~~~~~a~~~---------A~a~Aa~~~~~~~--~~~~~ 295 (312)
T PRK09513 233 NAS--GEWIAKP-PACDVVSTVGAGDSMVGGLIYGLLM---RESSEHTLRL---------ATAVSALAVSQSN--VGITD 295 (312)
T ss_pred eCC--ceEEecC-CCccccCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhhCCC--CCCCC
Confidence 876 4677887 7789999999999999999999999 9999999999 99999 9999997 46888
Q ss_pred hhHHHHHHHH
Q psy8082 327 SNSAFVSWFK 336 (379)
Q Consensus 327 ~~~~~~~~~~ 336 (379)
.+|+ ++|+.
T Consensus 296 ~~e~-~~~l~ 304 (312)
T PRK09513 296 RPQL-AAMMA 304 (312)
T ss_pred HHHH-HHHHh
Confidence 8886 45553
No 34
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=9.5e-39 Score=299.12 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=215.0
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
||+++|++++|.+.. ....++||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~~D~~~~--------------~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gI~~ 65 (264)
T cd01940 1 RLAAIGDNVVDKYLH--------------LGKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKR-LGVDI 65 (264)
T ss_pred CeEEEcceEEEEecc--------------CceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHH-cCCCh
Confidence 689999999999842 134678999999999999999999999999999999999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecC-CcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCC
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR 174 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~ 174 (379)
++++..+ .+|+.+++. .++|+|++..+. ++.....+.+.+ ...+++++++|+++..+.+...++++.+ ++.+
T Consensus 66 ~~v~~~~-~~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~~g 138 (264)
T cd01940 66 SHCRVKE-GENAVADVE-LVDGDRIFGLSNKGGVAREHPFEAD--LEYLSQFDLVHTGIYSHEGHLEKALQAL---VGAG 138 (264)
T ss_pred hheEEcC-CCCceEEEE-ecCCceEEEeecCCcHHhcccCccc--HhHHhcCCEEEEcccccHHHHHHHHHHH---HHcC
Confidence 9998654 468887744 567888876553 322222221111 1237899999999776667888999999 9999
Q ss_pred cEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy8082 175 AKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (379)
Q Consensus 175 ~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~ 253 (379)
+++++|++.... +.+..+++++|++++|++|... ++..++++.+.+++++.++||+|++|+++++++ +
T Consensus 139 ~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~--~ 207 (264)
T cd01940 139 ALISFDFSDRWDDDYLQLVCPYVDFAFFSASDLSD---------EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGA--V 207 (264)
T ss_pred CEEEEcCcccCCHHHHHhhcccCCEEEechhhcCc---------chHHHHHHHHHHcCCCEEEEEECCCCeEEEeCC--e
Confidence 999999987542 2245778999999999877521 356677788888999999999999999999866 6
Q ss_pred eEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCC-HHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGN-LDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~-l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
.+++|+ ++++++|||||||+|+|||++++++ |++ +++|+++ |+++| +++++.|+
T Consensus 208 ~~~~~~-~~~~~vDttGAGDaf~ag~i~~l~~---g~~~~~~al~~---------a~~~aa~~~~~~G~ 263 (264)
T cd01940 208 FYSVAP-RPVEVVDTLGAGDSFIAGFLLSLLA---GGTAIAEAMRQ---------GAQFAAKTCGHEGA 263 (264)
T ss_pred EEecCC-cCCCCCCCCCchHHHHHHHHHHHHh---CCchHHHHHHH---------HHHHHHHHhcccCC
Confidence 788898 8899999999999999999999999 999 9999999 99999 99999996
No 35
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.6e-37 Score=297.75 Aligned_cols=291 Identities=15% Similarity=0.186 Sum_probs=238.9
Q ss_pred cEEEE-CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 16 DIVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 16 ~i~vi-G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
+|+.+ =++.+|.++++++++ +++.+++......+||++.|+|+++++||.++.+++.+|+ .+|+.+++.|++ .||+
T Consensus 3 ~i~~~~~~p~~d~~~~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~-~gv~ 79 (309)
T PRK10294 3 RIYTLTLAPSLDSATITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLAD-ENVP 79 (309)
T ss_pred eEEEEecChHHeEEEEeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHH-cCCC
Confidence 35555 599999999999985 7788888999999999999999999999999999999996 799999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH---hhccCccEEEEeCCCC----HHHHHHHHHHh
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK---NLLLKAKVIMFQGETP----WETTLYCLSKL 167 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~---~~l~~~~~v~~~~~~~----~~~~~~~~~~a 167 (379)
+.++...+. .++...+..+++|++.++..+++ .++.++++.+. ..+++++++|+++..+ .+.+.++++.+
T Consensus 80 ~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a 156 (309)
T PRK10294 80 VATVEAKDW-TRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAA 156 (309)
T ss_pred ceEEECCCC-CeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 999876543 34444456677788776655443 36666665432 2367899999988654 47788999999
Q ss_pred hhhccCCcEEEEecCCCCCCCchhh--cccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcC-CCEEEEEecCCce
Q psy8082 168 HVSLESRAKIIVNPSPAVYPLNPIV--MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK-CNTVIITLGGSGV 244 (379)
Q Consensus 168 ~~~~~~~~~v~~D~~~~~~~~~~~l--l~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g-~~~vivT~G~~G~ 244 (379)
++.|.++++|+.... .... ++++|++++|++|+..|++....+.+++.++++.+++.+ ++.++||+|.+|+
T Consensus 157 ---~~~g~~v~~D~~~~~---~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~ 230 (309)
T PRK10294 157 ---QKQGIRCIIDSSGDA---LSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQGA 230 (309)
T ss_pred ---HHcCCeEEEeCCCHH---HHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCce
Confidence 899999999997432 2222 457999999999999999987666677888888898876 8999999999999
Q ss_pred EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCC
Q psy8082 245 VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSS 323 (379)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~ 323 (379)
++++++ +.+++++ ++++++|||||||+|+|||++++++ |+++++|+++ |+++| ++|++.|+.+
T Consensus 231 ~~~~~~--~~~~~~~-~~v~vvDttGAGDaf~ag~l~~l~~---g~~~~~al~~---------a~a~aa~~v~~~G~~~- 294 (309)
T PRK10294 231 LGVDSE--NCIQVVP-PPVKSQSTVGAGDSMVGAMTLKLAE---NASLEEMVRF---------GVAAGSAATLNQGTRL- 294 (309)
T ss_pred EEEcCC--ccEEEeC-CCcccCCCcchHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCCCC-
Confidence 998876 4678888 7889999999999999999999999 9999999999 99999 9999999852
Q ss_pred CCChhHHHHHHHH
Q psy8082 324 ERKSNSAFVSWFK 336 (379)
Q Consensus 324 ~p~~~~~~~~~~~ 336 (379)
++.++ .+++.+
T Consensus 295 -~~~~~-~~~~~~ 305 (309)
T PRK10294 295 -CSHDD-TQKIYA 305 (309)
T ss_pred -CCHHH-HHHHHH
Confidence 33333 345444
No 36
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=4.3e-39 Score=310.98 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=225.1
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHC-CC--Ce--eEEEEecCChhHHHHHHHHhhh
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL-RA--SV--ALISKLGNDKFGKSYLEELRKY 90 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~L-G~--~v--~lvs~vG~D~~g~~i~~~l~~~ 90 (379)
+++++|++++|++...+. ..+...+||+++|+|+++++| |. ++ .+++.+|+| +|+.+++.|++
T Consensus 1 ~~~~~G~~~~d~i~~~~~----------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~- 68 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS----------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELES- 68 (328)
T ss_pred CccccCcEEeeccccCCC----------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHh-
Confidence 478999999999864331 355677999999999999999 44 66 889999999 99999999999
Q ss_pred cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCH--HHHHHHHHHhh
Q psy8082 91 NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPW--ETTLYCLSKLH 168 (379)
Q Consensus 91 ~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~--~~~~~~~~~a~ 168 (379)
+||++++ ...++.+|+.+++.++++|+|.++.+.++...+++++++.. .+..++++|+++..+. +...++++.+
T Consensus 69 ~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~--~~~~a~~~hl~~~~~~~~~~~~~~~~~a- 144 (328)
T cd01943 69 WGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNST--PLIRSSCIHLICSPERCASIVDDIINLF- 144 (328)
T ss_pred cCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccc--cccCCCeEEEECCHHHHHHHHHHHHHHH-
Confidence 9999988 66677789999888888889888777777778888887642 3789999999887544 6778888888
Q ss_pred hhcc------CCcEEEEecCCCC-----CCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHH--------HHHHh
Q psy8082 169 VSLE------SRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCM--------EKLLD 229 (379)
Q Consensus 169 ~~~~------~~~~v~~D~~~~~-----~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~--------~~l~~ 229 (379)
++ .+.++++||.+.. ++.+..+++++|++++|++|+..+++....+.....+.. .++..
T Consensus 145 --~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
T cd01943 145 --KLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQ 222 (328)
T ss_pred --HhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhc
Confidence 77 7888999998653 234568999999999999999999997533221121111 12345
Q ss_pred cCCCEEEEEecCCceEEEecCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccH
Q psy8082 230 MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKE 306 (379)
Q Consensus 230 ~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~ 306 (379)
.+++.||||+|++|+++++.++.+.+++|+ +++ +++|||||||+|+|||++++++ |+++++|+++
T Consensus 223 ~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~-~~v~~~~vvDttGAGDaF~agfl~~l~~---g~~~~~al~~-------- 290 (328)
T cd01943 223 DPGGGVVLRCGKLGCYVGSADSGPELWLPA-YHTKSTKVVDPTGGGNSFLGGFAAGLAL---TKSIDEACIY-------- 290 (328)
T ss_pred cCCCEEEEEeCCCCCEEEecCCCceEecCC-ccCCCCcccCCCCchHHHHHHHHHHHHc---CCCHHHHHHH--------
Confidence 689999999999999999851225788898 777 9999999999999999999999 9999999999
Q ss_pred HHHHHH-HHHhcccc
Q psy8082 307 LQCLVA-RRVQLEGK 320 (379)
Q Consensus 307 ~A~~~A-~~v~~~G~ 320 (379)
|+++| +++++.|.
T Consensus 291 -a~a~Aa~~v~~~G~ 304 (328)
T cd01943 291 -GSVAASFAIEQVGL 304 (328)
T ss_pred -HHHHHHHHHccCCC
Confidence 99999 99999994
No 37
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3.6e-37 Score=295.29 Aligned_cols=277 Identities=16% Similarity=0.166 Sum_probs=225.9
Q ss_pred EECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccce
Q psy8082 19 VVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (379)
Q Consensus 19 viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i 98 (379)
|.=++.+|.++.++++|.++ ..++..+...+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++ .||++.++
T Consensus 4 ~~~~p~~d~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~-~GV~~~~~ 80 (309)
T TIGR01231 4 VTLNPSVDISYPLTALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDH-SDIKHAFY 80 (309)
T ss_pred EEcchHHeEEEEcCCeeeCc-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHH-cCCceeEE
Confidence 44578899999999886655 66888899999999999999999999999999999975 99999999999 99999988
Q ss_pred eeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHH----HHHHHHhhccCccEEEEeCCC----CHHHHHHHHHHhhhh
Q psy8082 99 WLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS----DIDAAKNLLLKAKVIMFQGET----PWETTLYCLSKLHVS 170 (379)
Q Consensus 99 ~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~----~l~~~~~~l~~~~~v~~~~~~----~~~~~~~~~~~a~~~ 170 (379)
... ..|+.+..++. +|+++++...++. +..+ .++...+.+++++++|+++.. +......+++.+
T Consensus 81 ~~~--~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a--- 152 (309)
T TIGR01231 81 KIS--GETRNCIAILH-EGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERC--- 152 (309)
T ss_pred ECC--CCCEEeEEEEe-CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHH---
Confidence 653 35666666664 6888887665543 3222 223333457899999998864 356788899998
Q ss_pred ccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 171 LESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKIN-NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~-~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
++.+.++++|++..........++++|++++|++|++.+++.+.. +.++..+.++.+.+.|++.+++|+|++|++++++
T Consensus 153 ~~~g~~v~~D~~~~~~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~ 232 (309)
T TIGR01231 153 QNKGVPVVLDCSGATLQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHG 232 (309)
T ss_pred HhCCCeEEEECChHHHHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeC
Confidence 889999999998542111223456899999999999999996532 4455667777777789999999999999999987
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
+ +.+++|+ +++++||||||||+|+|||++++++ |+++++|+++ |+++| +++++.++.
T Consensus 233 ~--~~~~~~~-~~v~vvDttGAGDaF~agfl~~l~~---g~~~~~a~~~---------a~a~aa~~~~~~~~~ 290 (309)
T TIGR01231 233 H--TFYKVNI-PTISVVNPVGSGDSTVAGITSALLN---HESDHDLLKK---------ANTLGMLNAQEAQTG 290 (309)
T ss_pred C--eeEEeeC-CccCcCCCcchHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCcccC
Confidence 6 5788888 8889999999999999999999999 9999999999 99999 999888863
No 38
>PLN02548 adenosine kinase
Probab=100.00 E-value=8.2e-38 Score=302.67 Aligned_cols=270 Identities=21% Similarity=0.277 Sum_probs=216.8
Q ss_pred CCCCCCCceecCcEEEecCChHHHHHHHH---HHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeE
Q psy8082 33 TLPKPEETVKGYHFEQRFSGKGANQCVAA---AKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVC 109 (379)
Q Consensus 33 ~~p~~~~~~~~~~~~~~~GG~a~nvA~~l---~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~ 109 (379)
++|.+++.+...+....+||++.|+|..+ +++|.++.|+|.+|+|.+|+.+++.|++ +||+++++. ..+.+|+.+
T Consensus 34 ~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~-~gVd~~~~~-~~~~~T~~~ 111 (332)
T PLN02548 34 HLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATA-AGVNVHYYE-DESTPTGTC 111 (332)
T ss_pred HHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHH-cCCceeeec-cCCCCCceE
Confidence 44555666677788999999999986544 5669999999999999999999999999 999999875 466789998
Q ss_pred EEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhccCccEEEEeCC---CCHHHHHHHHHHhhhhccCCcEEEEecCCC
Q psy8082 110 SKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKAKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPA 184 (379)
Q Consensus 110 ~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~~~~~v~~~~~---~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~ 184 (379)
++.++ +|+|+++.+.++...++++++.. ..+.++.++++|+++. .+.+....+++.+ ++++.++.+|++..
T Consensus 112 ~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a---~~~g~~~~~~~~~~ 187 (332)
T PLN02548 112 AVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHA---AANNKTFMMNLSAP 187 (332)
T ss_pred EEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHH---HHcCCEEEEECCCh
Confidence 88886 78998876666666666665532 1234789999999863 4567888888888 88899889998755
Q ss_pred CC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhc------CCCEEEEEecCCceEEEecCCCc
Q psy8082 185 VY-----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM------KCNTVIITLGGSGVVYATRDNPR 253 (379)
Q Consensus 185 ~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~------g~~~vivT~G~~G~~~~~~~~~~ 253 (379)
.| +.+.++++++|++++|++|++.+++....+.++..+.++.+.++ +++.+|||+|++|++++.++ +
T Consensus 188 ~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~--~ 265 (332)
T PLN02548 188 FICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDG--K 265 (332)
T ss_pred hHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECC--e
Confidence 43 23567889999999999999999986433323455555544432 58899999999999998866 5
Q ss_pred eEEEccC--CCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCC
Q psy8082 254 LKTITVD--HVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNS 322 (379)
Q Consensus 254 ~~~~~~~--~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~ 322 (379)
.+++|+. ++.++||||||||+|+|||++++++ |+++++|+++ |+++| ++|++.|+..
T Consensus 266 ~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~---g~~l~eal~~---------a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 266 VKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQ---GKDIEECVRA---------GNYAANVIIQRSGCTY 325 (332)
T ss_pred EEEeccccCCcCccccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhccCCCC
Confidence 7777751 2457999999999999999999999 9999999999 99999 9999999863
No 39
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=5.9e-37 Score=293.80 Aligned_cols=278 Identities=15% Similarity=0.185 Sum_probs=226.0
Q ss_pred EEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCccc
Q psy8082 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (379)
Q Consensus 17 i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~ 96 (379)
+.+..++++|.+..+++++.+ ..+.+......+||++.|+|.++++||.++.++|.+|+ .+|+.+++.|++ ||++.
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~--gI~~~ 78 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLD-TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD--QIKHA 78 (309)
T ss_pred EEEecChHHeEEEEeCCeeeC-CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc--CCCce
Confidence 345689999999999998654 46677788999999999999999999999999999996 689999999987 99998
Q ss_pred ceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHH----HHHhhccCccEEEEeCCCC----HHHHHHHHHHhh
Q psy8082 97 YIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDID----AAKNLLLKAKVIMFQGETP----WETTLYCLSKLH 168 (379)
Q Consensus 97 ~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~l~~~~~v~~~~~~~----~~~~~~~~~~a~ 168 (379)
++.. ..+|+.+..+++ +|+++++...++ .++.++.. .+.+.++++|++|+++..+ .+....+++.+
T Consensus 79 ~~~~--~~~t~~~~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a- 152 (309)
T PRK13508 79 FYKI--KGETRNCIAILH-EGQQTEILEKGP--EISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELA- 152 (309)
T ss_pred EEEC--CCCCeeeEEEEe-CCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHH-
Confidence 7653 335777776665 688887765554 34444332 2234578999999987643 46677888888
Q ss_pred hhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 169 VSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKIN-NEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 169 ~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~-~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
++.|.++++|++..........+.++|++++|++|++.+++.+.. +.++..+.++++...|++.|+||+|++|++++
T Consensus 153 --~~~g~~v~~D~~~~~~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~ 230 (309)
T PRK13508 153 --NQAGKPVVLDCSGAALQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAK 230 (309)
T ss_pred --HHCCCEEEEECCcHHHHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEE
Confidence 899999999998542111112346899999999999999987543 34566677777777899999999999999998
Q ss_pred ecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
.++ +.+++|+ +++++||||||||+|+|||++++++ |+++++|+++ |+++| +++++.+..
T Consensus 231 ~~~--~~~~~~~-~~v~vvDttGAGDaF~Agfi~~l~~---g~~~~~al~~---------a~a~aa~~~~~~~~~ 290 (309)
T PRK13508 231 HND--TFYKVDI-PKIEVVNPVGSGDSTVAGIASGLLH---QEDDADLLKK---------ANVLGMLNAQEKQTG 290 (309)
T ss_pred eCC--ceEEEeC-CCccccCCcChhHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCcCcC
Confidence 766 5788888 8899999999999999999999999 9999999999 99999 999999964
No 40
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.8e-37 Score=299.05 Aligned_cols=300 Identities=16% Similarity=0.090 Sum_probs=241.4
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
...++|+|+|++++|++..+ ++ .....+||+++|+|.++++||.++.++|++|+|. . .
T Consensus 9 ~~~~~vlvvG~~~~D~i~~~------g~-----~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~----------~-~ 66 (335)
T PLN02630 9 IPQRRVLIVGNYCHDVLIQN------GS-----VTAESLGGAASFISNVLDALSVECELVSKVGPDF----------L-Y 66 (335)
T ss_pred CCCCCEEEEeeeeeeEEEeC------Cc-----EEEEecCcHHHHHHHHHHHcCCceEEEEEecCCc----------c-c
Confidence 34578999999999998653 22 1456789999999999999999999999999995 2 4
Q ss_pred CCcccceeeeCCcCceeEEEEEcC-----CCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHH
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISN-----KGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSK 166 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~-----~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~ 166 (379)
+++...+.. ++.+|+.++.++++ +|+++++...+++..+++++++.. .+..++++++.++.++++...+++.
T Consensus 67 ~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~--~~~~~~~~~l~~ei~~e~~~~~~~~ 143 (335)
T PLN02630 67 QVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM--RYEFGMAVGVAGEILPETLERMVEI 143 (335)
T ss_pred cccccceec-CCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHH--HhcccceeeecCCCcHHHHHHHHHH
Confidence 676655543 67789999988876 568899888999999999998763 2778899999998888999999998
Q ss_pred hhhhcc-----CCcEEEEecCCCC---CC----CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCE
Q psy8082 167 LHVSLE-----SRAKIIVNPSPAV---YP----LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNT 234 (379)
Q Consensus 167 a~~~~~-----~~~~v~~D~~~~~---~~----~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~ 234 (379)
+ +. ++..++|||.+.. |+ ...++++++|++++|++|+..+ . .+ ++ .+ ...
T Consensus 144 a---~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne~Ea~~l-~-----~~---~~----~~--~~~ 205 (335)
T PLN02630 144 C---DVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASSEEALFI-D-----VE---EV----RQ--KCC 205 (335)
T ss_pred h---hhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecHHHHhhc-C-----HH---HH----cc--CCE
Confidence 8 77 7889999998631 21 2347899999999999999886 1 12 21 12 237
Q ss_pred EEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-H
Q psy8082 235 VIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-R 313 (379)
Q Consensus 235 vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~ 313 (379)
++||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||++++++ |+++++|+++ |+++| +
T Consensus 206 vvvt~G~~G~~~~~~~--~~~~~~~-~~v~~vDttGAGDaF~agfi~~l~~---g~~~~~a~~~---------A~a~aa~ 270 (335)
T PLN02630 206 VIVTNGKKGCRIYWKD--GEMRVPP-FPAIQVDPTGAGDSFLGGFVAGLVQ---GLAVPDAALL---------GNYFGSL 270 (335)
T ss_pred EEEEECCCceEEEECC--eeEEeCC-CCCCCCCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHH
Confidence 9999999999999876 5788998 8899999999999999999999999 9999999999 99999 9
Q ss_pred HHhccccCCCCCChhHH-HHHHHHhcCCCCCcee-------eeeeeeeeccCcceeeeecCCCCccccc
Q psy8082 314 RVQLEGKNSSERKSNSA-FVSWFKNNGNERGVFG-------LAMKEVYVPLPLHKLIVPISPDKCRYST 374 (379)
Q Consensus 314 ~v~~~G~~~~~p~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (379)
++++.|. |+.+.. +.+++++ -..+++.+ ..++|++.+|..++++++.+.+.|+|.+
T Consensus 271 ~v~~~G~----~~~~~~~l~~~~~~-i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
T PLN02630 271 AVEQVGI----PKFDLRQLQRVKDE-VQRRKMQCELSFLKPNGHNQFHASLSAAKLIPVDSQQEPKLLV 334 (335)
T ss_pred HhCcCCC----CCCCHHHHHHHhhc-EEEEEeecceeecccccHHHHHHhhhhhccCChhhhhcccccc
Confidence 9999994 433332 2344333 22233333 2677999999999999999999999975
No 41
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=2.8e-36 Score=305.33 Aligned_cols=296 Identities=16% Similarity=0.188 Sum_probs=231.6
Q ss_pred CCCcEEEECccccceeccc--CCC-C-CCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHh
Q psy8082 13 DEADIVVVGSCLVEFITYV--QTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELR 88 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~--~~~-p-~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~ 88 (379)
..++|+|+|++++|++..+ +++ | .+...+........+|| ++|+|.++++||.++.++|.+|+|.+|+.+.+.|+
T Consensus 9 ~~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~ 87 (473)
T PRK11316 9 ERAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLA 87 (473)
T ss_pred CCCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 4568999999999999874 333 2 34445667788888999 69999999999999999999999999999999999
Q ss_pred hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHH-HHHHhhccCccEEEEeCCC--CHHHHHHHHH
Q psy8082 89 KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI-DAAKNLLLKAKVIMFQGET--PWETTLYCLS 165 (379)
Q Consensus 89 ~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l-~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~ 165 (379)
+ .||+++++.. .+.+|+.++.+++.+++............++++.+ +.....+++++++|+++.. ..+....+++
T Consensus 88 ~-~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~~~ 165 (473)
T PRK11316 88 A-VGVKCDFVSV-PTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAMIQ 165 (473)
T ss_pred H-cCCceeEEEc-CCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHHHH
Confidence 9 9999998865 56789988888875443222111122223344443 2233458899999997532 2256778888
Q ss_pred HhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHH-hcCCCEEEEEecCCce
Q psy8082 166 KLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLL-DMKCNTVIITLGGSGV 244 (379)
Q Consensus 166 ~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~-~~g~~~vivT~G~~G~ 244 (379)
.+ ++.+.++++||.+.. ...++.+|++++|++|++.+++.. .+.++..+.++.++ +.|++.++||.|++|+
T Consensus 166 ~~---k~~g~~vv~Dp~~~~----~~~~~~~dil~pN~~Ea~~l~g~~-~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~ 237 (473)
T PRK11316 166 LA---RKAGVPVLIDPKGTD----FERYRGATLLTPNLSEFEAVVGKC-KDEAELVEKGMKLIADYDLSALLVTRSEQGM 237 (473)
T ss_pred HH---HhcCCeEEEeCCCCC----ccccCCCeEECcCHHHHHHHhCCC-CCHHHHHHHHHHHHHhcCCCEEEEEecCCCc
Confidence 88 889999999998542 144678999999999999999852 23345555555555 5799999999999999
Q ss_pred EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCC
Q psy8082 245 VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSS 323 (379)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~ 323 (379)
+++++++ ..+++|+ ++++++|||||||+|.|||+++|++ |+++++|+++ |+++| +++++.|+.+
T Consensus 238 ~~~~~~~-~~~~~~~-~~v~vvDttGAGDaF~aa~~~~l~~---g~~~~~al~~---------A~a~Aa~~v~~~G~~~- 302 (473)
T PRK11316 238 TLLQPGK-APLHLPT-QAREVYDVTGAGDTVISVLAAALAA---GNSLEEACAL---------ANAAAGVVVGKLGTST- 302 (473)
T ss_pred EEEecCC-ceEEecC-cCCCCCCCCCCcHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHhhcccCCCcc-
Confidence 9888763 3578898 8889999999999999999999999 9999999999 99999 9999999863
Q ss_pred CCChhHHHHHHHH
Q psy8082 324 ERKSNSAFVSWFK 336 (379)
Q Consensus 324 ~p~~~~~~~~~~~ 336 (379)
++.+++ ..++.
T Consensus 303 -~~~~~l-~~~l~ 313 (473)
T PRK11316 303 -VSPIEL-ENALR 313 (473)
T ss_pred -CCHHHH-HHHHh
Confidence 566665 34444
No 42
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=8.2e-37 Score=285.74 Aligned_cols=254 Identities=16% Similarity=0.182 Sum_probs=209.8
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
++|+++|++++|++...+ +.++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .||+
T Consensus 1 ~~v~~iG~~~~D~~~~~~--------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~-~gI~ 65 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG--------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLAR-MGVD 65 (260)
T ss_pred CeEEEeccceeeecccCC--------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHH-cCCc
Confidence 479999999999985321 1478999999999999999999999999999999999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecC-CcC--CCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GAN--TYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~--~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
++++...+. +|+.+.+.++ +++|++..+. +.. ..+++.+++ .+++++++|++... ...++++.+ +
T Consensus 66 ~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~----~l~~~~~v~~~~~~---~~~~~~~~~---~ 133 (260)
T PRK09813 66 ISHVHTKHG-VTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYA----WLAQYDIVHAAIWG---HAEDAFPQL---H 133 (260)
T ss_pred chheeeecC-CCceEEEEEe-CCcEEeeccCCCcccccccCHHHHH----HHHhCCEEEEeccc---hHHHHHHHH---H
Confidence 999987654 6888777775 6888876554 333 334444433 36789999997532 235677778 8
Q ss_pred cCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecC
Q psy8082 172 ESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~ 250 (379)
+++.++++|+..... +.+..+++++|+++.|+++. ..++.++++.+.+++++.++||.|++|+++++++
T Consensus 134 ~~~~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~ 203 (260)
T PRK09813 134 AAGKLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQE----------DEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGA 203 (260)
T ss_pred HcCCeEEEEcCCCccHHHHHHhCCceeEEEecCCcc----------hHHHHHHHHHHHHcCCCEEEEEECCCceEEEECC
Confidence 899999999986432 34567889999999886531 1356778888888999999999999999999876
Q ss_pred CCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 251 ~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+.+++|+ ++.+++|||||||+|+|||++++++ |+++++|+++ |+++| +++++.|+
T Consensus 204 --~~~~~~~-~~~~~vDttGAGDaF~ag~i~~~~~---g~~~~~al~~---------a~~~aa~~~~~~G~ 259 (260)
T PRK09813 204 --QFWRQAP-EPVTVVDTMGAGDSFIAGFLCGWLA---GMTLPQAMAQ---------GTACAAKTIQYHGA 259 (260)
T ss_pred --EEEecCC-cccCCCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhccCC
Confidence 6889998 8889999999999999999999999 9999999999 99999 99999996
No 43
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=269.38 Aligned_cols=281 Identities=17% Similarity=0.225 Sum_probs=245.7
Q ss_pred CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceee
Q psy8082 21 GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWL 100 (379)
Q Consensus 21 G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~ 100 (379)
=++.+|.++.++.+ ..++.++.......+||+|.|||..|+.||.++...|.+|.+ .|+.+.+.|++ .||...++++
T Consensus 7 LNPaiD~~~~l~~l-~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~-~gi~~~fv~v 83 (310)
T COG1105 7 LNPALDYTVFLDEL-ELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKD-EGIPDAFVEV 83 (310)
T ss_pred cChhHhheeecccc-cccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHh-cCCCceEEEc
Confidence 48899999999887 678899999999999999999999999999999999999997 79999999999 9999999876
Q ss_pred eCCcCceeEEEEEcC-CCceeEEecCCcCCCCCHHHHHHHHh----hccCccEEEEeCCC----CHHHHHHHHHHhhhhc
Q psy8082 101 LQDVTTGVCSKVISN-KGTHQTNIIPGANTYLSASDIDAAKN----LLLKAKVIMFQGET----PWETTLYCLSKLHVSL 171 (379)
Q Consensus 101 ~~~~~T~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~l~~~~~----~l~~~~~v~~~~~~----~~~~~~~~~~~a~~~~ 171 (379)
. ..|+.++.+.+. +|+.+.+ ..+.+.+++++++.+.+ .+++.|+|.++|+. +.+...++++.+ +
T Consensus 84 ~--g~TRinvki~~~~~~~~Tei--n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~---~ 156 (310)
T COG1105 84 K--GDTRINVKILDEEDGEETEI--NFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRIL---R 156 (310)
T ss_pred c--CCCeeeEEEEecCCCcEEEe--cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHH---H
Confidence 4 469999888886 4444443 56778899988877543 36789999999965 578899999999 9
Q ss_pred cCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCC
Q psy8082 172 ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~ 251 (379)
+.+.++++|.++.. +...+-...+++|||.+|++.++|.+..+.+|..++++.+...|+++|||++|.+|+++.+++
T Consensus 157 ~~g~~vilD~Sg~~--L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~- 233 (310)
T COG1105 157 QQGAKVILDTSGEA--LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAE- 233 (310)
T ss_pred hcCCeEEEECChHH--HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccC-
Confidence 99999999998653 223333458999999999999999999888899999999999999999999999999999998
Q ss_pred CceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 252 ~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
..++..+ |++++++|+||||++.|||++++.+ ++++++++++ |+++| .++++.+.. .|+.++.
T Consensus 234 -~~~~a~~-p~~~vvstVGAGDs~VAGf~~~~~~---~~~~e~~l~~---------avA~g~a~~~~~~~~--~~~~~~~ 297 (310)
T COG1105 234 -GVYFASP-PKVQVVSTVGAGDSMVAGFLAGLLK---GKSLEEALRF---------AVACGAAAASQKGTG--IPDLDQL 297 (310)
T ss_pred -CeEEEeC-CCcceecCcCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhhcCCCC--CCCHHHH
Confidence 5788877 7899999999999999999999999 9999999999 99999 999998864 6777754
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9.6e-34 Score=263.87 Aligned_cols=247 Identities=19% Similarity=0.241 Sum_probs=196.5
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
||+++|++++|++... + .....+||+++|+|.++++||.++.++|.+|+|.+|+ .+.|++ .||++
T Consensus 1 ~il~iG~~~iD~~~~~------~------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~-~gv~~ 65 (254)
T cd01937 1 KIVIIGHVTIDEIVTN------G------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFD-NGIEV 65 (254)
T ss_pred CeEEEcceeEEEEecC------C------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHH-CCcEE
Confidence 6899999999998632 1 4467889999999999999999999999999999998 688999 99996
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCc
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~ 175 (379)
..+ ....|+.+...++.+|++++..+.++....... . ..+.++|++|+++ .+.+....+.+. ..
T Consensus 66 ~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~ 129 (254)
T cd01937 66 ISL---LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES--P---LSTITAEIVILGP-VPEEISPSLFRK-------FA 129 (254)
T ss_pred EEe---cCCCeEEEEEEecCCCCeeeeeccccCCccccc--c---cccCcccEEEECC-CcchhcHHHHhh-------hh
Confidence 432 334677777777777888877665543332221 1 2378999999975 344444333332 26
Q ss_pred EEEEecCCCC--CC----CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 176 KIIVNPSPAV--YP----LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 176 ~v~~D~~~~~--~~----~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
++++|+++.+ +. ..+++++++|++++|++|++.+ .+..++++.+.++|++.++||.|++|++++++
T Consensus 130 ~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~ 201 (254)
T cd01937 130 FISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVI--------STPTELARLIKETGVKEIIVTDGEEGGYIFDG 201 (254)
T ss_pred heeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhc--------CCHHHHHHHHHHcCCCEEEEeeCCcceEEEEC
Confidence 8899998542 11 1357889999999999999983 24567778888899999999999999999988
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
+ +.+++|+ ++.+++|||||||+|.|||++++.+ |+++++|+.+ |+.+| ++++
T Consensus 202 ~--~~~~~~~-~~~~~vdt~GAGD~f~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~i~ 254 (254)
T cd01937 202 N--GKYTIPA-SKKDVVDPTGAGDVFLAAFLYSRLS---GKDIKEAAEF---------AAAAAAKFIE 254 (254)
T ss_pred C--ccEEccc-cCceeccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhC
Confidence 7 4688888 7888999999999999999999999 9999999999 99999 8874
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=7.9e-34 Score=267.94 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=202.9
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
.|+|+|++++|++.. +. . .....+||++.|+|.++++|| ++.++|.+|+| +|+.++++|++ .||++
T Consensus 1 ~v~~~G~~~~D~~~~------~~----~-~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~-~gi~~ 66 (277)
T cd01946 1 SLLVVGSVAFDAIET------PF----G-KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNS-HNIVT 66 (277)
T ss_pred CeEEEEEeeeeeecC------CC----c-eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHh-ccCcc
Confidence 389999999999821 11 1 245678999999999999998 69999999999 89999999999 99999
Q ss_pred cceeeeCCcCceeEEEEE--cCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccC
Q psy8082 96 KYIWLLQDVTTGVCSKVI--SNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES 173 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~--~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~ 173 (379)
+++++.++.+|....... +.++++...........+.+. ++ ..+++++++|+++ .+++...++++.+ ++.
T Consensus 67 ~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~~ 138 (277)
T cd01946 67 LGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ-LP---EHYKDSEFVFLGN-IAPELQREVLEQV---KDP 138 (277)
T ss_pred eeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC-Ch---HHhhcCCEEEECC-CCHHHHHHHHHHH---HhC
Confidence 999887665563221111 112222221111111122221 11 2378899999975 4667888888888 766
Q ss_pred CcEEEEecCCCC----CCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 174 RAKIIVNPSPAV----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 174 ~~~v~~D~~~~~----~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
.++++||...+ .+.+.++++++|++++|++|++.+++. ++..++++.+.+++++.|++|+|.+|++++++
T Consensus 139 -~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~-----~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 212 (277)
T cd01946 139 -KLVVMDTMNFWISIKPEKLKKVLAKVDVVIINDGEARQLTGA-----ANLVKAARLILAMGPKALIIKRGEYGALLFTD 212 (277)
T ss_pred -CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhCC-----chHHHHHHHHHHcCCCEEEEecCCCcEEEEEC
Confidence 78999985322 123567899999999999999999986 46778888899999999999999999999887
Q ss_pred CCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCC-----CCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 250 DNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKG-----GNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g-----~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
+ +.+++|+ ++++ ++|||||||+|+|||+++|++ | .++++|+.+ |+++| ++|++.|+.
T Consensus 213 ~--~~~~~~~-~~~~~~vDttGAGDaF~Agfl~~l~~---~~~~~~~~~~~a~~~---------a~~~aa~~~~~~G~~ 276 (277)
T cd01946 213 D--GYFAAPA-YPLESVFDPTGAGDTFAGGFIGYLAS---QKDTSEANMRRAIIY---------GSAMASFCVEDFGTK 276 (277)
T ss_pred C--ceEEcCC-cccCccCCCCCchHHHHHHHHHHHHh---CCCcchhhHHHHHHH---------hHHHHhhhhhhcCCC
Confidence 6 5788888 6765 899999999999999999998 7 468999999 99999 999999963
No 46
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.6e-33 Score=261.83 Aligned_cols=294 Identities=20% Similarity=0.224 Sum_probs=239.1
Q ss_pred CCCcEEEECccccceecccC--CC-C-CCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHh
Q psy8082 13 DEADIVVVGSCLVEFITYVQ--TL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELR 88 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~--~~-p-~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~ 88 (379)
++.+|+|+|++++|.+++-+ ++ | .|-..+++.+...++|| ++|||.+++.||.++.++|.+|+|+.|+.+.+.|.
T Consensus 9 ~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~ 87 (467)
T COG2870 9 KQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKALIELLK 87 (467)
T ss_pred cCCcEEEEcceeeeeeccccccccCCCCCCceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHH
Confidence 45789999999999998843 33 2 35557788889999999 57999999999999999999999999999999999
Q ss_pred hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCC-CCCHHHHHHHHhhccCccEEEEeCCCC--HHHHHHH
Q psy8082 89 KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANT-YLSASDIDAAKNLLLKAKVIMFQGETP--WETTLYC 163 (379)
Q Consensus 89 ~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~-~l~~~~l~~~~~~l~~~~~v~~~~~~~--~~~~~~~ 163 (379)
+ .+++..++ .++..+|.....++..+ .|.+..+ .... ......++.+.+.+.+.++++++.+.- ......+
T Consensus 88 ~-~~i~~~l~-~~~~r~T~~K~Rv~s~n--QQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~ 163 (467)
T COG2870 88 A-NGIDSDLL-RDKNRPTIVKLRVLSRN--QQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKM 163 (467)
T ss_pred h-cCcccceE-eecCCCceeeeeeeccc--ceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchhHHHH
Confidence 9 99996655 56788999998888754 3444333 2122 223334455556689999999985421 1226789
Q ss_pred HHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCCEEEEEecCC
Q psy8082 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLGGS 242 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vivT~G~~ 242 (379)
++.| +++|++|++||.+... +....|+.++||..|++...|....+ +++.+..++|.+ .....++||++++
T Consensus 164 I~~a---r~~~~pVLvDPKg~Df----~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~~~~~L~alLvTRsE~ 235 (467)
T COG2870 164 IDLA---REAGIPVLVDPKGKDF----EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLKEELDLSALLVTRSEK 235 (467)
T ss_pred HHHH---HHcCCcEEECCCCcch----hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHHHhhCcceEEEEeccC
Confidence 9999 9999999999997643 66788999999999999999986544 567776777765 5899999999999
Q ss_pred ceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 243 GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 243 G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
|..+++++ +..|+|+ ...++.|.|||||+.+|.|+.+|+. |.+++||+.+ ||.+| .++.+.|+.
T Consensus 236 GMtL~~~~--~~~h~pt-~AkEVyDVTGAGDTVIa~la~~laa---G~s~~eAc~l---------AN~AagiVVgKlGTa 300 (467)
T COG2870 236 GMTLFQEG--KPLHFPA-RAKEVYDVTGAGDTVIAVLAAALAA---GASLEEACEL---------ANAAAGIVVGKLGTA 300 (467)
T ss_pred CceeecCC--cccccch-hheeeeeccCCCchHHHHHHHHHHc---CCCHHHHHHH---------hhhhcceEEeeccce
Confidence 99999988 4599999 7889999999999999999999999 9999999999 99999 999999986
Q ss_pred CCCCChhHHHHHHHH
Q psy8082 322 SSERKSNSAFVSWFK 336 (379)
Q Consensus 322 ~~~p~~~~~~~~~~~ 336 (379)
. -+.+|+..+...
T Consensus 301 t--vs~~EL~nAV~p 313 (467)
T COG2870 301 T--VSPEELEMAVAP 313 (467)
T ss_pred e--ecHHHHHhhhcc
Confidence 4 456665544333
No 47
>KOG2854|consensus
Probab=99.98 E-value=2.4e-31 Score=245.46 Aligned_cols=288 Identities=23% Similarity=0.286 Sum_probs=230.4
Q ss_pred cEEEECccccceecccCC-----CC-CCCC--------------ceecCcEEEecCChHHHHHHHHHHCCC---CeeEEE
Q psy8082 16 DIVVVGSCLVEFITYVQT-----LP-KPEE--------------TVKGYHFEQRFSGKGANQCVAAAKLRA---SVALIS 72 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~-----~p-~~~~--------------~~~~~~~~~~~GG~a~nvA~~l~~LG~---~v~lvs 72 (379)
-++.+|++++|+...++. ++ +.+. ..........+||++.|+++++++++. ++.|+|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 456689999999988762 11 1111 223446788999999999999999987 899999
Q ss_pred EecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhccCccEEE
Q psy8082 73 KLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKAKVIM 150 (379)
Q Consensus 73 ~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~~~~~v~ 150 (379)
.+|.|.+|+.+.+.+++ .||++.+.. ..+.+|++|.++++.++ |+...+.++...++.++++. .+..++++.+++
T Consensus 88 svG~Dk~ge~l~~~~~~-aGv~~~yq~-~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~v~y 164 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARA-AGVNVHYQV-KEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAKVFY 164 (343)
T ss_pred eccCchHHHHHHHHHHh-cCceEEEEe-ccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhheeEEE
Confidence 99999999999999999 999998774 56889999999999776 88888889999999998865 345689999999
Q ss_pred EeCC---CCHHHHHHHHHHhhhhccCCcEEEEecCCCC-C----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHH
Q psy8082 151 FQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-Y----PLNPIVMILADIICINEQEAEIITDMKINNEEDLAD 222 (379)
Q Consensus 151 ~~~~---~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-~----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~ 222 (379)
+.|. ..++++..+.+.+ .+.+.+.+++.+-+. . +.+..+++++|+++.|++|++.+.........++.+
T Consensus 165 v~Gffltv~p~ai~~v~qh~---~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~e 241 (343)
T KOG2854|consen 165 VAGFFLTVSPDAIRKVAQHA---AENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKE 241 (343)
T ss_pred EEEEEEEeChHHHHHHHHHH---HHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHH
Confidence 9874 4678999999998 888877778877432 1 445678899999999999999997764332234433
Q ss_pred HHHHHHh------cCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHH
Q psy8082 223 CMEKLLD------MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCR 296 (379)
Q Consensus 223 ~~~~l~~------~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~ 296 (379)
....+.. ..++++++|.|.++++...++....+.+.+.+..+++||+||||+|.+||+++|.+ |+++++++
T Consensus 242 ia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~q---g~~l~~ci 318 (343)
T KOG2854|consen 242 IALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQ---GKSLEECI 318 (343)
T ss_pred HhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHc---CCCHHHHH
Confidence 3332222 35789999999999999988643344444423448999999999999999999999 99999999
Q ss_pred hhccCCcccHHHHHHH-HHHhccccC
Q psy8082 297 LRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 297 ~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
.. |+.+| .++...|..
T Consensus 319 r~---------g~~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 319 RA---------GSYAASHVIRRVGCT 335 (343)
T ss_pred HH---------HHHHhhheeeccCCC
Confidence 99 99999 999999973
No 48
>KOG2947|consensus
Probab=99.97 E-value=4.2e-29 Score=220.21 Aligned_cols=285 Identities=17% Similarity=0.193 Sum_probs=231.9
Q ss_pred CCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
.++.|+++|.+.+|++..++..|.++...+..+...+-||.++|++.+++.||.++.|+|.+.....-+.+++.|++ .|
T Consensus 3 ~~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~-rg 81 (308)
T KOG2947|consen 3 EPKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRR-RG 81 (308)
T ss_pred CcceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHh-cC
Confidence 45789999999999999999999999988888999999999999999999999999999999999899999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhh-hh-
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLH-VS- 170 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~-~~- 170 (379)
||++++.+....+.-..++.....|.|+++.+..+.+.++.+++.... +.++.|+|+.+..+.|++.-+....+ |-
T Consensus 82 Idishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvd--l~qy~WihfE~Rnp~etlkM~~~I~~~N~r 159 (308)
T KOG2947|consen 82 IDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVD--LTQYGWIHFEARNPSETLKMLQRIDAHNTR 159 (308)
T ss_pred CCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcc--cceeeeEEEecCChHHHHHHHHHHHHhhcC
Confidence 999999876554444444555567899999888899999999988654 89999999999888877643333220 00
Q ss_pred -c-cCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhc----CC-CEEEEEecCCc
Q psy8082 171 -L-ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM----KC-NTVIITLGGSG 243 (379)
Q Consensus 171 -~-~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~----g~-~~vivT~G~~G 243 (379)
. +.++.+.+|.... ++....+...+|+++++.+-++.+.= ....|+++.+..+ +. ..+|+-.+++|
T Consensus 160 ~pe~qrI~vSvd~en~-req~~~l~am~DyVf~sK~~a~~~gf------ks~rea~~~l~~r~~~~~pkpv~I~~w~~eG 232 (308)
T KOG2947|consen 160 QPEEQRIRVSVDVENP-REQLFQLFAMCDYVFVSKDVAKHLGF------KSPREACEGLYGRVPKGKPKPVLICPWASEG 232 (308)
T ss_pred CCccceEEEEEEecCc-HHHHHHHhhcccEEEEEHHHHhhhcc------CCHHHHHHHHHhhcccCCCCcEEEecccccc
Confidence 1 1356677777643 33445788899999999988877632 2555666665543 23 35778889999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccc
Q psy8082 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEG 319 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G 319 (379)
+-....++ +.+++++.++.++||+.|+||+|.|||+|+++++ +.++.||+.+ ||.+| ++++..|
T Consensus 233 A~~l~adg-~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~--~r~l~eAvdf---------g~rvas~Kl~g~G 297 (308)
T KOG2947|consen 233 AGALGADG-KYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQ--GRSLAEAVDF---------GNRVASKKLGGQG 297 (308)
T ss_pred ccccCCCC-CEEecCCCCCccceeeccCCCcchHHHHHHHHHh--hhhHHHHHHH---------HHHhhhccccccc
Confidence 98887776 7999998566799999999999999999995553 9999999999 99999 9998877
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.97 E-value=7.5e-29 Score=221.29 Aligned_cols=190 Identities=31% Similarity=0.417 Sum_probs=168.9
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
+|+++|++.+|.+..+++.|.+++.++.......+||+|.|+|.++++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 589999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCH-HHHHHHHHHhhhhccCC
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPW-ETTLYCLSKLHVSLESR 174 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~-~~~~~~~~~a~~~~~~~ 174 (379)
+|++|+++..+. +...++++.+ ++.+
T Consensus 58 --------------------------------------------------~~~v~i~~~~~~~~~~~~~~~~~---~~~~ 84 (196)
T cd00287 58 --------------------------------------------------ADAVVISGLSPAPEAVLDALEEA---RRRG 84 (196)
T ss_pred --------------------------------------------------ccEEEEecccCcHHHHHHHHHHH---HHcC
Confidence 799999987765 7888899999 8889
Q ss_pred cEEEEecCCCCCCC----chhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe-c
Q psy8082 175 AKIIVNPSPAVYPL----NPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT-R 249 (379)
Q Consensus 175 ~~v~~D~~~~~~~~----~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~-~ 249 (379)
.++++|+.+..... +.++++++|++++|++|++.+++....+.++..+.++.+.+++++.+++|+|++|+++++ +
T Consensus 85 ~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~ 164 (196)
T cd00287 85 VPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRG 164 (196)
T ss_pred CeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecC
Confidence 99999998654311 356889999999999999999998655556677888889999999999999999999998 5
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
+ ..+++|+ ++.+++||+||||+|+|||+++++
T Consensus 165 ~--~~~~~~~-~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 165 G--TEVHVPA-FPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred C--ceEEcCC-ccCCcccCCCchHHHHHHHHHHhC
Confidence 4 5788888 778899999999999999999974
No 50
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.80 E-value=1e-17 Score=157.40 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=155.4
Q ss_pred EEEEecCChhHHH-HHHHHhhh--cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH-HhhccC
Q psy8082 70 LISKLGNDKFGKS-YLEELRKY--NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA-KNLLLK 145 (379)
Q Consensus 70 lvs~vG~D~~g~~-i~~~l~~~--~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~-~~~l~~ 145 (379)
.++--|.|..|.. +...++-. .|+. .....+++...+..+.......+ .+++.+... ..+++.
T Consensus 4 vl~iag~D~sggaGi~aD~~t~~~lg~~--------~~~v~Ta~t~q~~~~~~~~~v~~-----~~~~~i~~q~~~l~~d 70 (268)
T PRK12412 4 ALTIAGSDTSGGAGIQADLKTFQELGVY--------GMTSLTTIVTMDPHNGWAHNVFP-----IPASTLKPQLETTIEG 70 (268)
T ss_pred EEEEEeeCCCchHHHHHHHHHHHHcCCe--------eceeeeEEEeEcCCCCcEEEEEe-----CCHHHHHHHHHHHHhC
Confidence 4566677765543 55544431 3432 12233444455544322222222 344444432 233444
Q ss_pred --ccEEEEeCCCCHHHHHHHHHHhhhhccCCcE-EEEecCCCC-------C-----CCchhhcccCeEEEeCHHHHHHhh
Q psy8082 146 --AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV-------Y-----PLNPIVMILADIICINEQEAEIIT 210 (379)
Q Consensus 146 --~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~-v~~D~~~~~-------~-----~~~~~ll~~~dil~~N~~E~~~l~ 210 (379)
.+++.++.-.+.+.+..+.+.+ ++.+.+ +++||.... . ...+.+++++|+++||..|++.|+
T Consensus 71 ~~~~~ikiG~l~~~~~v~~i~~~~---~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 147 (268)
T PRK12412 71 VGVDALKTGMLGSVEIIEMVAETI---EKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLS 147 (268)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH---HhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHh
Confidence 7999998887889999999988 877765 999996321 1 113457899999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCCCEEEEEecCCce------EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 211 DMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV------VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~------~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
|.+..+.++..++++.+.++|++.|+||.|.+|+ +++.++ +.++++. ++++.+|++||||+|+|+|+++|+
T Consensus 148 g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~--~~~~~~~-~~v~~~~t~GaGD~f~aa~aa~l~ 224 (268)
T PRK12412 148 GVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGE--TFDLLES-EKIDTTNTHGAGCTYSAAITAELA 224 (268)
T ss_pred CcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCC--EEEEEEe-CccCCCCCCchHHHHHHHHHHHHH
Confidence 9877777788999999999999999999998763 344433 4567888 788899999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |+++++|+++ |+.+. ..+..
T Consensus 225 ~---g~~l~eA~~~---------A~~~~~~~i~~ 246 (268)
T PRK12412 225 K---GKPVKEAVKT---------AKEFITAAIRY 246 (268)
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9 9999999999 99888 66654
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.78 E-value=5.4e-17 Score=151.27 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=147.9
Q ss_pred eeEEEEecCChhHHH-HHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCc
Q psy8082 68 VALISKLGNDKFGKS-YLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKA 146 (379)
Q Consensus 68 v~lvs~vG~D~~g~~-i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 146 (379)
...++--|.|..|.. +...++- . ... ......+.++...++..|. .+. . ...+.+....+.+...
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~-~--~~~---~~~~~~~~t~~t~~~~~G~-~v~--~-----~~~~~l~~~l~~l~~~ 69 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLAT-Y--TRN---GLHGFVAVTCLTAMTEKGF-EVF--P-----VDKEIFQQQLDSLKDV 69 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHH-H--HHc---CCccCeeeEEEecccCCce-EEE--E-----CCHHHHHHHHHHhhCC
Confidence 456777788866544 6666665 1 111 1234455566666666664 222 1 2222332222223344
Q ss_pred cEEEEe-CCC-CHHHHHHHHHHhhhhc-cCCcEEEEecCCC--CC---------CCchhhcccCeEEEeCHHHHHHhhCC
Q psy8082 147 KVIMFQ-GET-PWETTLYCLSKLHVSL-ESRAKIIVNPSPA--VY---------PLNPIVMILADIICINEQEAEIITDM 212 (379)
Q Consensus 147 ~~v~~~-~~~-~~~~~~~~~~~a~~~~-~~~~~v~~D~~~~--~~---------~~~~~ll~~~dil~~N~~E~~~l~~~ 212 (379)
++..+. +.. +.+....+++.+ + +.+.++++||... .| +.+.++++++|+++||++|++.|+|.
T Consensus 70 ~~~~i~~G~l~~~~~~~~~~~~~---~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~ 146 (253)
T PRK12413 70 PFSAIKIGLLPNVEIAEQALDFI---KGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGK 146 (253)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCc
Confidence 444443 433 456667777777 5 4688999999733 22 12335788999999999999999998
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCCce------EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc
Q psy8082 213 KINNEEDLADCMEKLLDMKCNTVIITLGGSGV------VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286 (379)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~------~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~ 286 (379)
+..+.++..++++.+.++|++.|+||.|.+|. ++++++ ..+.+. ++...+|++||||+|+|+|++++++
T Consensus 147 ~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~GaGDaf~a~~~~~l~~- 221 (253)
T PRK12413 147 EIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGK---EFVILE-SPVLEKNNIGAGCTFASSIASQLVK- 221 (253)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCC---EEEEEe-ecccCCCCCChHHHHHHHHHHHHHc-
Confidence 77777788899999999999999999998642 344332 344555 5667799999999999999999999
Q ss_pred CCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 287 QKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 287 ~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
|+++++|+++ |..+. ..+++
T Consensus 222 --g~~l~ea~~~---------A~~~~~~~l~~ 242 (253)
T PRK12413 222 --GKSPLEAVKN---------SKDFVYQAIQQ 242 (253)
T ss_pred --CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9999999999 98888 66654
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.77 E-value=2.4e-17 Score=153.79 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=129.4
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCc-EEEEecCCCC------CC------CchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRA-KIIVNPSPAV------YP------LNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~-~v~~D~~~~~------~~------~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+++.++.-.+.+.+..+.+.+ ++++. ++++||.... .+ ....+++++|+++||..|++.|++
T Consensus 67 ~~~aikiG~l~~~~~~~~i~~~~---~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGMLASAEIVEAVARKL---REYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhC
Confidence 46888888777788999999998 88888 6999986321 11 123577999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCEEEEEecC----Cce-EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc
Q psy8082 212 MKINNEEDLADCMEKLLDMKCNTVIITLGG----SGV-VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~g~~~vivT~G~----~G~-~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~ 286 (379)
.+..+.++..++++.+.++|++.|+||.|. +|. ++++++ +.++++. ++++++|++|+||+|.|+|+++|++
T Consensus 144 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~d~~GaGD~f~aalaa~la~- 219 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGG--EIHILKA-PRIETKNTHGTGCTLSAAIAANLAK- 219 (254)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECC--eEEEEEe-cccCCCCCCChHHHHHHHHHHHHHC-
Confidence 876666788889999999999999999997 344 556655 4678888 7889999999999999999999999
Q ss_pred CCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 287 QKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 287 ~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
|+++++|+++ |+.++ ..+..
T Consensus 220 --g~~l~eA~~~---------A~~~~~~~i~~ 240 (254)
T TIGR00097 220 --GLSLKEAVKE---------AKEFVTGAIRY 240 (254)
T ss_pred --CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9999999999 99999 77754
No 53
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.77 E-value=1.4e-17 Score=155.27 Aligned_cols=171 Identities=22% Similarity=0.221 Sum_probs=127.7
Q ss_pred CCCCCHHHHHHHHhhc------cCccEEEEeCCCC---HHHHHHHHHHhhhhccC--CcEEEEecCC----CCC------
Q psy8082 128 NTYLSASDIDAAKNLL------LKAKVIMFQGETP---WETTLYCLSKLHVSLES--RAKIIVNPSP----AVY------ 186 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~l------~~~~~v~~~~~~~---~~~~~~~~~~a~~~~~~--~~~v~~D~~~----~~~------ 186 (379)
...+++++++.+.+.+ ...+++.++.-.+ .+.+.++++.+ ++. +.++++||.. ..|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~---~~~~~~~~vv~Dpv~~~~~~~~~~~~~~ 125 (254)
T cd01173 49 GFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRL---KEKNPNLLYVCDPVMGDNGKLYVVAEEI 125 (254)
T ss_pred CeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHH---HHhCCCceEEECCCCCcCCcceecChhH
Confidence 3446666655442221 4677775443222 45566777777 665 8899999952 222
Q ss_pred -CCchhhcc-cCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC------ceEEEecCCCceEEEc
Q psy8082 187 -PLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS------GVVYATRDNPRLKTIT 258 (379)
Q Consensus 187 -~~~~~ll~-~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~------G~~~~~~~~~~~~~~~ 258 (379)
+.+.+++. ++|+++||.+|++.|+|.+..+.++..++++.+.++|++.|+||.|.. |++++++++ .++++
T Consensus 126 ~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~--~~~~~ 203 (254)
T cd01173 126 VPVYRDLLVPLADIITPNQFELELLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATE--AWLVQ 203 (254)
T ss_pred HHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCc--cEEEE
Confidence 22335555 999999999999999998777777888999999999999999999985 788887653 34444
Q ss_pred cCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 259 VDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 259 ~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
. +..+ ++|++||||+|+|+|+++|++ |+++++|+++ |+.+. ..+.
T Consensus 204 ~-~~~~~~~~~~GaGD~f~a~~~~~l~~---g~~~~~a~~~---------A~~~~~~~i~ 250 (254)
T cd01173 204 R-PKIPFPAYFNGTGDLFAALLLARLLK---GKSLAEALEK---------ALNFVHEVLE 250 (254)
T ss_pred e-eccCCCCCcCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHH
Confidence 4 3444 699999999999999999999 9999999999 98887 6553
No 54
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.76 E-value=3.5e-17 Score=151.37 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=126.1
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccC-CcEEEEecCCCC--C----------CCchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPAV--Y----------PLNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~D~~~~~--~----------~~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+++.++.-...+....+.+.+ ++. +.++++||.... + .....+++++|+++||..|++.|+|
T Consensus 68 ~~~~i~~G~l~~~~~~~~i~~~~---~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGMLGSAEIIEAVAEAL---KDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 67888886555678888888888 765 789999996421 1 1223466899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCEEEEEecCCc-----eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc
Q psy8082 212 MKINNEEDLADCMEKLLDMKCNTVIITLGGSG-----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G-----~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~ 286 (379)
....+.++..++++.+.++|++.|+||.|.+| .++++++ +.++++. ++.+++|++|+||+|+|+|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~GaGD~f~a~l~a~l~~- 220 (242)
T cd01169 145 LEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGG--GFFEFES-PRIDTKNTHGTGCTLSSAIAANLAK- 220 (242)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECC--cEEEEec-ceeCCCCCCChHHHHHHHHHHHHHC-
Confidence 87666667778888899999999999999875 3566665 4678888 7788899999999999999999999
Q ss_pred CCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 287 QKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 287 ~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
|+++++|+++ |+.+- ..+.
T Consensus 221 --g~~~~~A~~~---------A~~~~~~~i~ 240 (242)
T cd01169 221 --GLSLEEAVRE---------AKEYVTQAIR 240 (242)
T ss_pred --CCCHHHHHHH---------HHHHHHHHHH
Confidence 9999999999 98887 6654
No 55
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.75 E-value=3.6e-17 Score=155.21 Aligned_cols=166 Identities=19% Similarity=0.232 Sum_probs=123.4
Q ss_pred CCCCHHHHHHHHhh------ccCccEEEEeCCCCH---HHHHHHHHHhhhhccCC--cEEEEecC-----CCCC------
Q psy8082 129 TYLSASDIDAAKNL------LLKAKVIMFQGETPW---ETTLYCLSKLHVSLESR--AKIIVNPS-----PAVY------ 186 (379)
Q Consensus 129 ~~l~~~~l~~~~~~------l~~~~~v~~~~~~~~---~~~~~~~~~a~~~~~~~--~~v~~D~~-----~~~~------ 186 (379)
..+++++++.+.+. +.++|+++.+.-.+. +.+.++++.+ ++.+ ..+++||. ...+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~---~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~ 128 (286)
T TIGR00687 52 QVLPPDELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQV---KQANPQALYVCDPVMGDPEKGCYVAPDLL 128 (286)
T ss_pred eECCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHH---HHhCCCCcEEECCeeeeCCCCeeeChhHH
Confidence 44555665554333 357898754433333 4566777766 6554 66889993 1111
Q ss_pred CCc-hhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEE-ecCCce--------EEEecCCCceEE
Q psy8082 187 PLN-PIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-LGGSGV--------VYATRDNPRLKT 256 (379)
Q Consensus 187 ~~~-~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT-~G~~G~--------~~~~~~~~~~~~ 256 (379)
+.+ ..+++++|+++||..|++.|+|.+..+.++..++++.++++|++.++|| .|.+|+ ++++++ +.++
T Consensus 129 ~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~--~~~~ 206 (286)
T TIGR00687 129 EVYREKAIPVADIITPNQFELELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQE--GRWH 206 (286)
T ss_pred HHHHHhccccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCC--ceEE
Confidence 112 3477899999999999999999877677788888999999999999999 688775 445544 4666
Q ss_pred EccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH
Q psy8082 257 ITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA 312 (379)
Q Consensus 257 ~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A 312 (379)
++. +..+ ++|++||||+|+|+|++++++ |+++++|+++ |+.+.
T Consensus 207 ~~~-~~~~~~~d~~GaGD~f~A~~l~~l~~---g~~~~~al~~---------A~~~v 250 (286)
T TIGR00687 207 ISR-PLAVFMRQPVGTGDLIAALLLATLLH---GNSLKEALEK---------TVSAV 250 (286)
T ss_pred Eec-cCcCCCCCCCChHHHHHHHHHHHHhc---CCCHHHHHHH---------HHHHH
Confidence 776 5566 689999999999999999999 9999999999 98884
No 56
>PRK07105 pyridoxamine kinase; Validated
Probab=99.74 E-value=9.3e-17 Score=152.23 Aligned_cols=162 Identities=21% Similarity=0.199 Sum_probs=123.0
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCC----CCC--------CchhhcccCeEEEeCHHHHHHhhCC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA----VYP--------LNPIVMILADIICINEQEAEIITDM 212 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~----~~~--------~~~~ll~~~dil~~N~~E~~~l~~~ 212 (379)
.+|+|+++.-.+.+....+.+.++..++.+.++++||... .|. .+.++++++|+++||..|++.|+|.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 6788887655555554444443311155678899999732 121 2346899999999999999999997
Q ss_pred CCC----ChhhHHHHHHHHHhcCCCEEEEEe-----cCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHH
Q psy8082 213 KIN----NEEDLADCMEKLLDMKCNTVIITL-----GGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYF 283 (379)
Q Consensus 213 ~~~----~~~~~~~~~~~l~~~g~~~vivT~-----G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l 283 (379)
+.. +.++..++++.+.+.|++.|+||. |..|++++++++...++.+. +... +|++||||+|+|+|++++
T Consensus 155 ~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~-~~~~-~~~~GaGD~f~aa~~~~l 232 (284)
T PRK07105 155 PYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFC-KYIP-AHYPGTGDIFTSVITGSL 232 (284)
T ss_pred CcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEee-cccC-CCcCChhHHHHHHHHHHH
Confidence 643 356788888999999999999999 67788888754324555655 4444 799999999999999999
Q ss_pred HhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 284 KAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 284 ~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
++ |+++++|+++ |+.++ ..+..-..
T Consensus 233 ~~---g~~l~~av~~---------A~~~~~~~i~~~~~ 258 (284)
T PRK07105 233 LQ---GDSLPIALDR---------AVQFIEKGIRATLG 258 (284)
T ss_pred hC---CCCHHHHHHH---------HHHHHHHHHHHHHh
Confidence 99 9999999999 99999 87775443
No 57
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.74 E-value=1.1e-16 Score=150.22 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=125.8
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCc-EEEEecCCC------CCC------CchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRA-KIIVNPSPA------VYP------LNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~-~v~~D~~~~------~~~------~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+.+.+..-...+....+.+.+ ++.+. ++++||... .+. ..+++++++|+++||..|++.|+|
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~---~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEAL---KRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 57888887655678888888888 77665 799999621 111 223578999999999999999999
Q ss_pred CCCCChhh-HHHHHHHHHhcCCCEEEEEecC--Cce----EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 MKINNEED-LADCMEKLLDMKCNTVIITLGG--SGV----VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~~~~~~~~-~~~~~~~l~~~g~~~vivT~G~--~G~----~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
.+..+.++ ..++++.+.++|++.|+||.|. +|. ++++++ +.++++. +..+.+|++|+||+|+|+|+++++
T Consensus 150 ~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~--~~~~~~~-~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 150 LPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGE--GEERFSA-PRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCC--cEEEEEe-eeECCCCCCChHHHHHHHHHHHHH
Confidence 86555444 7888999999999999999998 554 566655 4577887 778888999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |+++++|+++ |+.++ ..+.+
T Consensus 227 ~---g~~l~~A~~~---------A~~~~~~~i~~ 248 (266)
T PRK06427 227 K---GASLLDAVQT---------AKDYVTRAIRH 248 (266)
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9 9999999999 99888 77755
No 58
>PRK05756 pyridoxamine kinase; Validated
Probab=99.74 E-value=7.9e-17 Score=152.90 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCCCHHHHHHHHhh------ccCccEEEEeCCCC----HHHHHHHHHHhhhhccCC--cEEEEecCCCC-----C-----
Q psy8082 129 TYLSASDIDAAKNL------LLKAKVIMFQGETP----WETTLYCLSKLHVSLESR--AKIIVNPSPAV-----Y----- 186 (379)
Q Consensus 129 ~~l~~~~l~~~~~~------l~~~~~v~~~~~~~----~~~~~~~~~~a~~~~~~~--~~v~~D~~~~~-----~----- 186 (379)
..+++++++.+.+. +..++++ +.|..+ .+.+.++++.+ ++.+ ..+++||.-.. +
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-~~G~l~~~~~~~~v~~~i~~~---k~~~~~~~~v~DPv~~d~~~~~~~~~~~ 127 (286)
T PRK05756 52 CVMPPSHLTEIVQGIADIGWLGECDAV-LSGYLGSAEQGEAILDAVRRV---KAANPQALYFCDPVMGDPEKGCIVAPGV 127 (286)
T ss_pred eeCCHHHHHHHHHHHHhcCccccCCEE-EECCCCCHHHHHHHHHHHHHH---HHhCCCceEEECCccccCCCCEEECccH
Confidence 33455555544222 3477866 444432 34566666666 6554 55788986211 1
Q ss_pred --CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC--------ceEEEecCCCceEE
Q psy8082 187 --PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS--------GVVYATRDNPRLKT 256 (379)
Q Consensus 187 --~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~--------G~~~~~~~~~~~~~ 256 (379)
...+.+++++|+++||..|++.|+|.+..+.++..++++++.++|++.|+||.|.. |+++++++ +.++
T Consensus 128 ~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~--~~~~ 205 (286)
T PRK05756 128 AEFLRDRALPAADIITPNLFELEWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTAD--GAWH 205 (286)
T ss_pred hHHHHHhhcccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECC--ceEE
Confidence 12234889999999999999999998776777888889999999999999999876 47777766 4667
Q ss_pred EccCCCcCc-ccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 257 ITVDHVEYP-IESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 257 ~~~~~~~~v-vDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
++. +..++ +|++||||+|+|+|+++|++ |+++++|+++ |+.+. ..+..
T Consensus 206 ~~~-~~~~~~v~~~GaGD~f~a~~~a~l~~---g~~~~~al~~---------A~~~~~~~i~~ 255 (286)
T PRK05756 206 ISR-PLVDFMRQPVGVGDLTSALFLARLLQ---GGSLEEALEH---------TTAAVYEVMAR 255 (286)
T ss_pred Eec-CccCCCCCCCChHHHHHHHHHHHHhc---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 776 66777 79999999999999999999 9999999999 99888 77654
No 59
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.73 E-value=2.8e-16 Score=157.83 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=151.9
Q ss_pred eEEEEecCChhHHH-HHHHHhhh--cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccC
Q psy8082 69 ALISKLGNDKFGKS-YLEELRKY--NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (379)
Q Consensus 69 ~lvs~vG~D~~g~~-i~~~l~~~--~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~ 145 (379)
..++--|.|..|.. |...++-. .|+... ...|. +...+..+...+ ......+..++++.+.+.+.
T Consensus 4 ~vltiaG~D~~ggaGi~aDi~t~~alg~~~~------~v~Ta--~t~Qnt~~~~~i---~~~~~~~~~~q~~a~~~d~~- 71 (448)
T PRK08573 4 VALTIAGSDSGGGAGIEADLKTFAALGVHGA------VAITS--VTAQNTYEVRAI---HDLPPEVVAAQIEAVWEDMG- 71 (448)
T ss_pred EEEEEeeeCCCCHHHHHHHHHHHHHcCCeec------ccceE--EEeecCCCceEE---EECCHHHHHHHHHHHHhcCC-
Confidence 45666777866543 55555431 333221 11233 222222222222 22233344455554433222
Q ss_pred ccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCC------CCC------CchhhcccCeEEEeCHHHHHHhhCCC
Q psy8082 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------VYP------LNPIVMILADIICINEQEAEIITDMK 213 (379)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~------~~~------~~~~ll~~~dil~~N~~E~~~l~~~~ 213 (379)
.+.+.++.-.+.+.+..+++.+ ++++.++++||... ++. ....+++++|+++||..|++.|+|.+
T Consensus 72 ~~~ik~G~l~~~e~~~~i~~~~---k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~ 148 (448)
T PRK08573 72 IDAAKTGMLSNREIIEAVAKTV---SKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMK 148 (448)
T ss_pred CCEEEECCcCCHHHHHHHHHHH---HHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCC
Confidence 3555555444678889999999 88999999999521 221 22467899999999999999999987
Q ss_pred CCChhhHHHHHHHHHh-cCCCEEEEEecC----Cce-EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcC
Q psy8082 214 INNEEDLADCMEKLLD-MKCNTVIITLGG----SGV-VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~-~g~~~vivT~G~----~G~-~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~ 287 (379)
..+.++..+++++|.+ .|++.|+||.|. +|+ +++.++ +.++++. ++++++|++||||+|+|+|++++++
T Consensus 149 i~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~--~~~~~~~-~~v~~~dt~GAGDaFsAa~aa~l~~-- 223 (448)
T PRK08573 149 IRSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNG--TFREFRA-PRVESGCTHGTGCSFSAAIAAGLAK-- 223 (448)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECC--eEEEEEe-cCcCCCCCCChHHHHHHHHHHHHHc--
Confidence 7777788889999985 799999999985 354 444544 4677888 7888999999999999999999999
Q ss_pred CCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 288 KGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 288 ~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
|+++++|+++ |+.+. ..++
T Consensus 224 -G~~l~eAl~~---------A~~~~~~al~ 243 (448)
T PRK08573 224 -GLDPEEAIKT---------AKKFITMAIK 243 (448)
T ss_pred -CCCHHHHHHH---------HHHHHHHHHH
Confidence 9999999999 99988 8877
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.73 E-value=2e-16 Score=149.62 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=119.2
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhcc--CCcEEEEecCCCC-----C------CCc-hhhcccCeEEEeCHHHHHH
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLE--SRAKIIVNPSPAV-----Y------PLN-PIVMILADIICINEQEAEI 208 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~--~~~~v~~D~~~~~-----~------~~~-~~ll~~~dil~~N~~E~~~ 208 (379)
+.++|+++++.-...+....+.+.++.-+. .+.++++||.... + +.. +.+++++|+++||..|++.
T Consensus 86 l~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~ 165 (281)
T PRK08176 86 LRQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEI 165 (281)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHH
Confidence 347899998765555544444444400022 4678999996211 1 113 3588999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc-------eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHH
Q psy8082 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG-------VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAY 281 (379)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G-------~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~ 281 (379)
|+|.+..+.++..++++++.++|++.|+||.|..| +++++++ +.+..+. +...+|++|+||+|+|+|++
T Consensus 166 L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 166 LTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTAD--SVNVISH--PRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCC--ceEEEec--CccCCCCCChhHHHHHHHHH
Confidence 99987767778888999999999999999999988 5667765 3343333 44457999999999999999
Q ss_pred HHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 282 YFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 282 ~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
++++ |+++++|+++ |+.+- ..+.
T Consensus 242 ~l~~---g~~l~~Av~~---------A~~~v~~~i~ 265 (281)
T PRK08176 242 GLLK---GKALTDAAHR---------AGLRVLEVMR 265 (281)
T ss_pred HHhc---CCCHHHHHHH---------HHHHHHHHHH
Confidence 9999 9999999999 88777 5553
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.70 E-value=5.4e-16 Score=145.91 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=125.9
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCC-cEEEEecCCCC-------C----C-CchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPSPAV-------Y----P-LNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~D~~~~~-------~----~-~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+.+.+..-...+.+..+.+.+ ++.+ .++++||.... + + ....+++.+|+++||..|++.|+|
T Consensus 74 ~~~aikiG~l~s~~~i~~i~~~l---~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGMLPTVDIIELAADTI---KEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 46888888766778888888888 7766 46899997421 1 1 123478899999999999999999
Q ss_pred C-CCCChhhHHHHHHHHHhcCCCEEEEEecCCce------EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 M-KINNEEDLADCMEKLLDMKCNTVIITLGGSGV------VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~-~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~------~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
. ...+.++..++++.+.++|++.|+||.|.+|. ++++++ +.++++. +..+.+|++|+||+|+|+|+++|+
T Consensus 151 ~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~--~~~~~~~-~~~~~~~t~GaGD~fsaalaa~l~ 227 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGE--TAEVLES-EMIDTPYTHGAGCTFSAAVTAELA 227 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECC--eEEEEEe-eeeCCCCCCcHHHHHHHHHHHHHH
Confidence 7 46667788899999999999999999998762 455554 4567777 777888999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |.++++|+++ |..+. ..+..
T Consensus 228 ~---g~~l~~Av~~---------A~~~~~~~i~~ 249 (270)
T PRK12616 228 K---GSEVKEAIYA---------AKEFITAAIKE 249 (270)
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9 9999999999 98888 66654
No 62
>KOG3009|consensus
Probab=99.67 E-value=1.3e-15 Score=145.70 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=167.1
Q ss_pred EEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCccc
Q psy8082 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (379)
Q Consensus 17 i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~ 96 (379)
=+++|...+|+...++.-.+.+.........+..||.|.|.|.++++||.++.|++.+|+|..+++.+
T Consensus 343 Pv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~------------ 410 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFR------------ 410 (614)
T ss_pred ceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhh------------
Confidence 38999999999998876444333333446778899999999999999999999999999983211100
Q ss_pred ceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcE
Q psy8082 97 YIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAK 176 (379)
Q Consensus 97 ~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~ 176 (379)
..+.+.++...+ +..+++++++++++...+.++++ + +.+..+
T Consensus 411 ---------------------------------~~~~~~~e~~~d-l~~a~~I~~DsNiS~~~Ma~il~-a---k~~k~~ 452 (614)
T KOG3009|consen 411 ---------------------------------QNSHKIVESNED-LLSADFILLDSNISVPVMARILE-A---KKHKKQ 452 (614)
T ss_pred ---------------------------------hhhhhhhhhhhh-hhcCCEEEEcCCCCHHHHHHHHH-h---hhccCc
Confidence 001111111122 33899999999999999999999 7 899999
Q ss_pred EEEecCCCCC--CCchhhc-ccCeEEEeCHHHHHHhhCCC-C-C------ChhhHHHHHHHHHh---cCCCEEEEEecCC
Q psy8082 177 IIVNPSPAVY--PLNPIVM-ILADIICINEQEAEIITDMK-I-N------NEEDLADCMEKLLD---MKCNTVIITLGGS 242 (379)
Q Consensus 177 v~~D~~~~~~--~~~~~ll-~~~dil~~N~~E~~~l~~~~-~-~------~~~~~~~~~~~l~~---~g~~~vivT~G~~ 242 (379)
|+|+|.+... +.++.+. -..+.++||..|+-...... . . ....+.+.++.+.+ ..-...|+|.-++
T Consensus 453 V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~ 532 (614)
T KOG3009|consen 453 VWFEPTDIDKVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANK 532 (614)
T ss_pred eEecCCCchhhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccC
Confidence 9999986432 2222222 24889999999984332221 1 1 12234444444433 3667899999999
Q ss_pred ceEEEecCCCc---eEEEccCCCc-CcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 243 GVVYATRDNPR---LKTITVDHVE-YPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 243 G~~~~~~~~~~---~~~~~~~~~~-~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
|+++..++... ....|++... ++|+..||||+|++|+++++++ +.++.++++- +..++ ...++
T Consensus 533 G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~---~~~v~es~~g---------g~~~~ralls~ 600 (614)
T KOG3009|consen 533 GSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAH---NKTVVESLQG---------GQECARALLST 600 (614)
T ss_pred ceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhc---CcchHhhccc---------cHHHHHHHHhc
Confidence 98876554212 2334441222 8999999999999999999999 9999999999 87777 55443
No 63
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.57 E-value=1.5e-13 Score=140.41 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=126.2
Q ss_pred CCCHHHHHHH-HhhccCc--cEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCC------CCCC------c----h
Q psy8082 130 YLSASDIDAA-KNLLLKA--KVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------VYPL------N----P 190 (379)
Q Consensus 130 ~l~~~~l~~~-~~~l~~~--~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~------~~~~------~----~ 190 (379)
.++++.+... ..+++.. +++.++.-.+.+.+..+.+.+ + +.++++||... +++. . .
T Consensus 281 ~~~~~~~~~ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l---~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~ 355 (504)
T PTZ00347 281 VVNEDFFAAQIDSVMSDFNISVVKLGLVPTARQLEIVIEKL---K--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKE 355 (504)
T ss_pred eCCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHh---c--CCCEEEcccceeCCCCcccchhHHHHHHHHHHH
Confidence 3555555442 2334544 445455455678888888887 5 56899998532 1111 1 2
Q ss_pred hhcccCeEEEeCHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCCEEEEEecCCc-------eEEEecCCCceEEEccCCC
Q psy8082 191 IVMILADIICINEQEAEIITDMK-INNEEDLADCMEKLLDMKCNTVIITLGGSG-------VVYATRDNPRLKTITVDHV 262 (379)
Q Consensus 191 ~ll~~~dil~~N~~E~~~l~~~~-~~~~~~~~~~~~~l~~~g~~~vivT~G~~G-------~~~~~~~~~~~~~~~~~~~ 262 (379)
.+++.+|+++||..|++.|+|.+ ..+.++..++++.+.+.|++.|+||.|.+| .+++.+++.+.++++. ++
T Consensus 356 ~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 434 (504)
T PTZ00347 356 RIFPMATIITPNIPEAERILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTA-NR 434 (504)
T ss_pred hccCcceEEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEe-ee
Confidence 57789999999999999999974 556667888899999999999999999863 3455533224677888 77
Q ss_pred cCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 263 EYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 263 ~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
++++|++|+||+|+|+|++++++ |.++++|+++ |..+- ..+..
T Consensus 435 i~~~~~~GaGD~fsaaiaa~la~---G~~l~eAv~~---------A~~~v~~~i~~ 478 (504)
T PTZ00347 435 IATINTHGTGCTLASAISSFLAR---GYTVPDAVER---------AIGYVHEAIVR 478 (504)
T ss_pred ECCCCCCChHHHHHHHHHHHHhC---CCCHHHHHHH---------HHHHHHHHHHh
Confidence 88899999999999999999999 9999999999 87777 55543
No 64
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.55 E-value=1.8e-13 Score=130.54 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=117.6
Q ss_pred CCCCCHHHHHHHHhhcc------CccEEEEeCCCCHHHHHHHHHHhhhhccCC--cEEEEecCCC----CC------CCc
Q psy8082 128 NTYLSASDIDAAKNLLL------KAKVIMFQGETPWETTLYCLSKLHVSLESR--AKIIVNPSPA----VY------PLN 189 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~l~------~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~--~~v~~D~~~~----~~------~~~ 189 (379)
...+++++++...+.++ ..+++..+.-.+.+....+.+.+...++.+ .++++||.-. .| +.+
T Consensus 54 g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~ 133 (296)
T PTZ00344 54 GHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAY 133 (296)
T ss_pred CeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHH
Confidence 35667766665543332 234444443334555555555441003344 4789997531 12 234
Q ss_pred hhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEE---ecCCc----eEEEec--CC--CceEEEc
Q psy8082 190 PIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT---LGGSG----VVYATR--DN--PRLKTIT 258 (379)
Q Consensus 190 ~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT---~G~~G----~~~~~~--~~--~~~~~~~ 258 (379)
..+++++|+++||++|++.|+|.+..+.++..++++.+.+.|++.|+|| .|.+| +++.+. ++ .+.+.+.
T Consensus 134 ~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 213 (296)
T PTZ00344 134 RELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGK 213 (296)
T ss_pred HHHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEe
Confidence 4678899999999999999999876666777888899998999999999 55566 444432 11 1345566
Q ss_pred cCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 259 VDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 259 ~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
. +..+ ++++|+||+|+|+|++.+.+ | ++++|+++ |.... ..+.
T Consensus 214 ~-~~~~-~~~~GaGD~f~A~~~a~l~~---g-~~~~a~~~---------A~a~~~~~i~ 257 (296)
T PTZ00344 214 V-PYIE-GRYTGTGDLFAALLLAFSHQ---H-PMDLAVGK---------AMGVLQDIIK 257 (296)
T ss_pred c-cccC-CCCCCchHHHHHHHHHHHhc---C-CHHHHHHH---------HHHHHHHHHH
Confidence 5 5555 57899999999999977877 7 99999999 87777 5553
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.54 E-value=2.4e-13 Score=138.78 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=124.1
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCcE-EEEecCCCCC------------CCchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAVY------------PLNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~-v~~D~~~~~~------------~~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+++.++.-.+.+++..+++.+ ++.+.+ +++||.-... .....+++.+|+++||..|++.|+|
T Consensus 78 ~~~aik~G~l~~~~~i~~i~~~l---~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGMLPSAEIVKVLCQAL---KEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 46777777666788888888888 777764 9999952111 1113578899999999999999998
Q ss_pred CC-CCChhhHHHHHHHHHhcCCCEEEEEecCCc------eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 MK-INNEEDLADCMEKLLDMKCNTVIITLGGSG------VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~~-~~~~~~~~~~~~~l~~~g~~~vivT~G~~G------~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
.. ..+.++..++++.+.++|++.|+||.|..+ .++++++ +.++++. +..+.+|++|+||+|+|+|+++++
T Consensus 155 ~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~--~~~~~~~-~~i~~~~t~GaGD~fsaaiaa~l~ 231 (502)
T PLN02898 155 GDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGT--EFHELRS-SRIKTRNTHGTGCTLASCIAAELA 231 (502)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCC--eEEEEec-ceeCCCCCCchhhhHHHHHHHHHH
Confidence 53 445567888999999999999999999753 3556543 4667787 778889999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |+++++|+++ |+.+. ..+..
T Consensus 232 ~---G~~l~eAv~~---------A~~~v~~ai~~ 253 (502)
T PLN02898 232 K---GSDMLSAVKV---------AKRYVETALEY 253 (502)
T ss_pred c---CCCHHHHHHH---------HHHHHHHHHHh
Confidence 9 9999999999 99998 77765
No 66
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.52 E-value=2.3e-13 Score=126.92 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=118.1
Q ss_pred hccCccEEEEeCCCCH-HHHHHHHHHhhhhccCCcEEEEecCCCCC-CCch--hhcccCeEEEeCHHHHHHhhCCCCCC-
Q psy8082 142 LLLKAKVIMFQGETPW-ETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNP--IVMILADIICINEQEAEIITDMKINN- 216 (379)
Q Consensus 142 ~l~~~~~v~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~--~ll~~~dil~~N~~E~~~l~~~~~~~- 216 (379)
.+...|++++++..+. +....+++.+ ++++.++++|+..... .... .+.+.+++++||..|++.|++.+..+
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~---~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~ 150 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKA---LAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEI 150 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHH---HhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhh
Confidence 3678999999876654 7888889888 8889999999985321 1000 24567999999999999999976433
Q ss_pred hhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHH
Q psy8082 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCR 296 (379)
Q Consensus 217 ~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~ 296 (379)
.++..++++.+.+++. .++|+.|. +.+++++++ .++++. .....++++|+||+|+|.+++.+.+ |+++.+|+
T Consensus 151 ~~~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~--~~~~~~-~~~~~~~~~GaGD~lag~iaa~la~---g~~~~eA~ 222 (254)
T cd01171 151 QADRLAAAREAAAKLG-ATVVLKGA-VTVIADPDG--RVYVNP-TGNPGLATGGSGDVLAGIIAALLAQ---GLSPLEAA 222 (254)
T ss_pred hhHHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCC--cEEEEC-CCCcccccCchHHHHHHHHHHHHHc---CCCHHHHH
Confidence 2345677788888764 45556674 666676543 455666 6778899999999998888888889 99999999
Q ss_pred hhccCCcccHHHHHHH-HHHhc
Q psy8082 297 LRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 297 ~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
++ |+.+. ++.+.
T Consensus 223 ~~---------A~~~~~~a~~~ 235 (254)
T cd01171 223 AL---------AVYLHGLAGDL 235 (254)
T ss_pred HH---------HHHHHHHHHHH
Confidence 99 88877 76654
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.52 E-value=2.8e-13 Score=125.73 Aligned_cols=154 Identities=25% Similarity=0.261 Sum_probs=115.0
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCC-------C----C-CchhhcccCeEEEeCHHHHHHhhCC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAV-------Y----P-LNPIVMILADIICINEQEAEIITDM 212 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-------~----~-~~~~ll~~~dil~~N~~E~~~l~~~ 212 (379)
..+.+.++.-...+.+..+.+.+ ++.+.++++||--.. . + ..+.+++.+|++.||..|++.|+|.
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l---~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFL---KKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHH---HHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcccCCchhhhhHHHHH---hccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 68899988776778888888888 777889999995211 1 1 2234899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCC----c---eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHh
Q psy8082 213 KINNEEDLADCMEKLLDMKCNTVIITLGGS----G---VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKA 285 (379)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vivT~G~~----G---~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~ 285 (379)
++.+.+++.+++++|+++|++.|+||-+.. + -++++++ +.+.++. +..+..+..|.||.|+|++++.|++
T Consensus 137 ~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~~~~~~GTGd~fss~laa~l~~ 213 (246)
T PF08543_consen 137 EINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGG--EFYWLSS-PRIPTGSFHGTGDLFSSALAAFLAK 213 (246)
T ss_dssp --SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTS--EEEEEEE-EEECTSGCTTHHHHHHHHHHHHHHT
T ss_pred CCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeecc--ceeecce-eEEcCCCCCCchhHHHHHHHHHHHc
Confidence 888889999999999999999999998862 2 2344333 5666665 4455578999999999999999999
Q ss_pred cCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 286 GQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 286 ~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
|+++++|+.. |...- ..+.
T Consensus 214 ---g~~l~~Av~~---------A~~~v~~~i~ 233 (246)
T PF08543_consen 214 ---GYSLEEAVEK---------AKNFVRRAIK 233 (246)
T ss_dssp ---TSSHHHHHHH---------HHHHHHHHHH
T ss_pred ---CCCHHHHHHH---------HHHHHHHHHH
Confidence 9999999999 87766 5543
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.46 E-value=6.1e-12 Score=115.51 Aligned_cols=216 Identities=17% Similarity=0.207 Sum_probs=153.4
Q ss_pred eeEEEEecCChhHH-HHHHHHhhh--cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHh-hc
Q psy8082 68 VALISKLGNDKFGK-SYLEELRKY--NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKN-LL 143 (379)
Q Consensus 68 v~lvs~vG~D~~g~-~i~~~l~~~--~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~-~l 143 (379)
...++--|.|.-|. =|...|+-+ .|+ - +...-+++...+..|-..+ ..+.++.+....+ .+
T Consensus 4 ~~~LtIAGsD~sGGAGIqADLKTf~a~gv--y------g~saITaltaQNt~gV~~v-------~~v~~~~v~~Ql~av~ 68 (263)
T COG0351 4 PVVLTIAGSDSSGGAGIQADLKTFQALGV--Y------GMSAITALTAQNTLGVHGV-------HPVPPEFVEAQLDAVF 68 (263)
T ss_pred ceEEEEeccCCCccHHHHHHHHHHHhcCC--c------cceEEEEEEEeecCceeeE-------EeCCHHHHHHHHHHHh
Confidence 35677788887653 377767652 122 1 1111122223333332122 2355555543211 12
Q ss_pred c--CccEEEEeCCCCHHHHHHHHHHhhhhccCC-cEEEEecCC------CC-C-----CCchhhcccCeEEEeCHHHHHH
Q psy8082 144 L--KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPSP------AV-Y-----PLNPIVMILADIICINEQEAEI 208 (379)
Q Consensus 144 ~--~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~D~~~------~~-~-----~~~~~ll~~~dil~~N~~E~~~ 208 (379)
+ ..+++-+..-...+++..+.+.+ ++++ .++++||-- .+ . .+.++++|+++++.||..|++.
T Consensus 69 ~D~~v~avKtGML~~~eiie~va~~l---~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~ 145 (263)
T COG0351 69 SDIPVDAVKTGMLGSAEIIEVVAEKL---KKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEA 145 (263)
T ss_pred hcCCCCEEEECCcCCHHHHHHHHHHH---HhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHH
Confidence 2 45677777766788888888888 8888 779999941 11 1 2335899999999999999999
Q ss_pred hhCC-CCCChhhHHHHHHHHHhcCCCEEEEEecCCc----eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHH
Q psy8082 209 ITDM-KINNEEDLADCMEKLLDMKCNTVIITLGGSG----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYF 283 (379)
Q Consensus 209 l~~~-~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G----~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l 283 (379)
|+|. ++.+.++..++++.+.+.|++.|+||-|... -++|.++ ..+.+.. +.++--++.|+|++|.|++++.|
T Consensus 146 L~g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~--~~~~f~~-~ri~t~~tHGTGCTlSaAIaa~L 222 (263)
T COG0351 146 LSGLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGG--SFYTFEA-PRIPTKNTHGTGCTLSAAIAANL 222 (263)
T ss_pred HcCCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCC--ceEEEec-cccCCCCCCCccHHHHHHHHHHH
Confidence 9995 8888899999988899999999999988633 3455554 5777777 77777899999999999999999
Q ss_pred HhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 284 KAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 284 ~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
++ |.++++|++. |-.+- ..++
T Consensus 223 A~---G~~l~~AV~~---------Ak~fv~~AI~ 244 (263)
T COG0351 223 AK---GLSLEEAVKK---------AKEFVTRAIR 244 (263)
T ss_pred Hc---CCCHHHHHHH---------HHHHHHHHHh
Confidence 99 9999999999 87777 6665
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.45 E-value=6.1e-12 Score=133.90 Aligned_cols=219 Identities=11% Similarity=0.092 Sum_probs=148.6
Q ss_pred eeEEEEecCChhHHH-HHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH-Hhhcc-
Q psy8082 68 VALISKLGNDKFGKS-YLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA-KNLLL- 144 (379)
Q Consensus 68 v~lvs~vG~D~~g~~-i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~-~~~l~- 144 (379)
..+++--|.|..|.. |...++-.... +++ ...-.+++...+..|-..+ ..++++.+... ..+++
T Consensus 242 ~~vLtIaGsD~sggAGi~aDlkt~~al---g~~---~~~viTaltaQn~~~v~~v-------~~~~~~~v~~Ql~~~~~d 308 (755)
T PRK09517 242 PRVLSIAGTDPTGGAGIQADLKSIAAG---GGY---GMCVVTALVAQNTHGVNTI-------HTPPLTFLEEQLEAVFSD 308 (755)
T ss_pred CeEEEEeccCCCcHHHHHHHHHHHHHc---CCc---ccchheeEeeEcccceeEE-------eeCCHHHHHHHHHHHHcC
Confidence 556888899977654 66666551111 111 1112222233332221111 22444444322 22344
Q ss_pred -CccEEEEeCCCCHHHHHHHHHHhhhhccC-CcEEEEecCCCC------C-----CCchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 -KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPAV------Y-----PLNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 -~~~~v~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~D~~~~~------~-----~~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+.+-++.-.+.+....+.+.+ ++. +.++++||.... . +.+.++++.+|+++||..|++.|+|
T Consensus 309 ~~~~aiKiGmL~s~e~v~~i~~~l---~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g 385 (755)
T PRK09517 309 VTVDAVKLGMLGSADTVDLVASWL---GSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCG 385 (755)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH---HhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhC
Confidence 35778887666678888888888 764 467999996321 1 1234688999999999999999999
Q ss_pred CC-CCChhhHHHHHHHHHhcCCCEEEEEecC------CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 MK-INNEEDLADCMEKLLDMKCNTVIITLGG------SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~~-~~~~~~~~~~~~~l~~~g~~~vivT~G~------~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
.. ..+.++..++++.+.+.+...|+||.|. .|++++.++ +.++++. +.++.+|++|+||+|+|+|+++|+
T Consensus 386 ~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~--~~~~~~~-~~v~~~~t~GaGDtfsaaiaa~La 462 (755)
T PRK09517 386 EAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDG--SVHQVEN-PRVNTTNSHGTGCSLSAALATLIA 462 (755)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCC--eEEEEee-cccCCCCCcChHHHHHHHHHHHHH
Confidence 53 3455677888888887644589999883 466655433 4677888 788899999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |.++++|++. |+.+- ..+..
T Consensus 463 ~---G~sl~eAv~~---------A~~~v~~~i~~ 484 (755)
T PRK09517 463 A---GESVEKALEW---------ATRWLNEALRH 484 (755)
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHHh
Confidence 9 9999999999 99888 66644
No 70
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.43 E-value=4.2e-12 Score=130.32 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=142.5
Q ss_pred CCCeeEEEEecCChhHHH-HHHHHhhh--cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHH-H
Q psy8082 65 RASVALISKLGNDKFGKS-YLEELRKY--NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA-K 140 (379)
Q Consensus 65 G~~v~lvs~vG~D~~g~~-i~~~l~~~--~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~-~ 140 (379)
+....+++.-|.|..|.. |...++-. .|+..- ...|.. ...+..| +.. -..++++.+... .
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~------~v~Tal--t~q~t~~---v~~----v~~~~~~~i~~ql~ 91 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGM------AVITAL--VAQNTRG---VRA----VHVPPADFLRAQLD 91 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeec------chhheE--eeecCcc---eee----eccCCHHHHHHHHH
Confidence 344566777888877654 55555431 343211 122332 2222222 211 122444444322 2
Q ss_pred hhcc--CccEEEEeCCCCHHHHHHHHHHhhhhccC-CcEEEEecCCC------CC-----CCchhhcccCeEEEeCHHHH
Q psy8082 141 NLLL--KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPA------VY-----PLNPIVMILADIICINEQEA 206 (379)
Q Consensus 141 ~~l~--~~~~v~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~D~~~~------~~-----~~~~~ll~~~dil~~N~~E~ 206 (379)
.+++ ..+.+.++.-...+....+.+.. ++. +.++++||.-. +. +.+.++++.+|+++||..|+
T Consensus 92 ~l~~d~~~~aikiG~l~s~~~i~~v~~~l---~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea 168 (530)
T PRK14713 92 AVSDDVTVDAVKIGMLGDAEVIDAVRTWL---AEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPEL 168 (530)
T ss_pred HHHhCCCCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHH
Confidence 2233 35778776555556666666665 443 34589999632 11 12346899999999999999
Q ss_pred HHhhCCCC-CChhhHHHHHHHHHhcCCCEEEEEecCCc-----eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHH
Q psy8082 207 EIITDMKI-NNEEDLADCMEKLLDMKCNTVIITLGGSG-----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALA 280 (379)
Q Consensus 207 ~~l~~~~~-~~~~~~~~~~~~l~~~g~~~vivT~G~~G-----~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~ 280 (379)
+.|+|.+. .+.++..++++.+.+.+...||||.|..+ .+++..++ +.++++. ++++.+|++|+||+|.|+|+
T Consensus 169 ~~Ltg~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~-~~~~~~~-~~v~~~~t~GaGD~fsaala 246 (530)
T PRK14713 169 AVLLGEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDG-AVTEVPG-PRVDTRNTHGTGCSLSSALA 246 (530)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCC-eEEEEee-eeeCCCCCCcHHHHHHHHHH
Confidence 99999764 35567778888888765578999988632 34444443 4677887 78888999999999999999
Q ss_pred HHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHH
Q psy8082 281 YYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRV 315 (379)
Q Consensus 281 ~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v 315 (379)
++|++ |.++++|++. |+..- ..+
T Consensus 247 a~La~---G~~l~eAv~~---------A~~~v~~~i 270 (530)
T PRK14713 247 TRLGR---GGDWAAALRW---------ATAWLHGAI 270 (530)
T ss_pred HHHHC---CCCHHHHHHH---------HHHHHHHHH
Confidence 99999 9999999999 88755 544
No 71
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.42 E-value=3e-12 Score=118.41 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=110.2
Q ss_pred HhhccCccEEEEeCCC----CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhccc--CeEEEeCHHHHHH
Q psy8082 140 KNLLLKAKVIMFQGET----PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMIL--ADIICINEQEAEI 208 (379)
Q Consensus 140 ~~~l~~~~~v~~~~~~----~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~--~dil~~N~~E~~~ 208 (379)
.+.++++|++++..-. ..+.+..+++.+ ++.+.++++||..... +...+++.. +|+++||..|+..
T Consensus 44 ~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~---~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~ 120 (242)
T cd01170 44 EELAKIAGALVINIGTLTSEQIEAMLKAGKAA---NQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAA 120 (242)
T ss_pred HHHHHHcCcEEEeCCCCChHHHHHHHHHHHHH---HhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHH
Confidence 3457899999997432 234455555667 7889999999974322 112344554 9999999999999
Q ss_pred hhCCCCCC---------hhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHH
Q psy8082 209 ITDMKINN---------EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGAL 279 (379)
Q Consensus 209 l~~~~~~~---------~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 279 (379)
|++.+..+ .++..++++.+.+++...|++| |.... +++++ +.++++. .+..+.++.|+||+|+|++
T Consensus 121 L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~--~~~~~~~-~~~~~~~v~GtGdtLa~ai 195 (242)
T cd01170 121 LAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGE--RVVVVKN-GHPLLTKITGTGCLLGAVI 195 (242)
T ss_pred HhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECC--EEEEEeC-CCccccCCCchHHHHHHHH
Confidence 99975421 4577888888888766678898 66664 45544 5778876 4555566799999999999
Q ss_pred HHHHHhcCCCCCHHHHHhh
Q psy8082 280 AYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 280 ~~~l~~~~~g~~l~~A~~~ 298 (379)
++.+++ |.++.+|+..
T Consensus 196 Aa~LA~---g~~~~~A~~~ 211 (242)
T cd01170 196 AAFLAV---GDDPLEAAVS 211 (242)
T ss_pred HHHHhC---CCCHHHHHHH
Confidence 999999 9999999999
No 72
>PLN02978 pyridoxal kinase
Probab=99.36 E-value=4.1e-11 Score=114.84 Aligned_cols=154 Identities=22% Similarity=0.215 Sum_probs=108.9
Q ss_pred ccEEEEeCCCC---HHHHHHHHHHhhhhcc--CCcEEEEecCCCC----C------CCc-hhhcccCeEEEeCHHHHHHh
Q psy8082 146 AKVIMFQGETP---WETTLYCLSKLHVSLE--SRAKIIVNPSPAV----Y------PLN-PIVMILADIICINEQEAEII 209 (379)
Q Consensus 146 ~~~v~~~~~~~---~~~~~~~~~~a~~~~~--~~~~v~~D~~~~~----~------~~~-~~ll~~~dil~~N~~E~~~l 209 (379)
++.+.++.-.. .+.+.++++.+ +. .++++++||.... + +.+ ..+++.+|+++||..|++.|
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~---~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKL---RSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHH---HHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 67776654333 34455666655 54 3467899997321 1 112 35899999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCCEEEEEecC-CceEEEe---cC----CCceEEEccCCCcCcccCCChhHHHHHHHHH
Q psy8082 210 TDMKINNEEDLADCMEKLLDMKCNTVIITLGG-SGVVYAT---RD----NPRLKTITVDHVEYPIESEGVGDCFVGALAY 281 (379)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~-~G~~~~~---~~----~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~ 281 (379)
+|.+..+.++..++++.+.++|++.|+||.+. +|.+... .+ ..+.++++. +..+.. ++|+||+|+|.+++
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-~~GtGD~fsA~laa 241 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVI-PKIPAY-FTGTGDLMAALLLG 241 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEc-cCCCCC-CCCchHHHHHHHHH
Confidence 99876666678888999999999999998854 3433221 11 013566666 556554 58999999998888
Q ss_pred HHHhcCCC-CCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 282 YFKAGQKG-GNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 282 ~l~~~~~g-~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
.+.+ | .++++|++. |...- ..+.
T Consensus 242 ~l~~---g~~~l~~A~~~---------A~~~v~~~i~ 266 (308)
T PLN02978 242 WSHK---YPDNLDKAAEL---------AVSSLQAVLR 266 (308)
T ss_pred HHhc---CCcCHHHHHHH---------HHHHHHHHHH
Confidence 8888 8 799999999 87666 5543
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.34 E-value=4e-11 Score=112.98 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=107.4
Q ss_pred hhccCccEEEEeCCCC-HHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChh
Q psy8082 141 NLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEE 218 (379)
Q Consensus 141 ~~l~~~~~v~~~~~~~-~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~ 218 (379)
+.++.+|++.+++..+ .+...++++.+ ++.+.++++|+..... .........+++++||..|++.|+|....+.+
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~---~~~~~pvVlDa~g~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~ 164 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEV---LELDKPVVLDADALNLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQG 164 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHH---HhcCCCEEEEhHHHHHHhhcccccCCCEEECCCHHHHHHHhCCchhhhh
Confidence 3467899999987443 34467788888 8889999999974311 11101134689999999999999997655556
Q ss_pred hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 219 DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 219 ~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
+..++++++.++. ..++++.|..+.++..++ ..+..+. .....+++|+||+++|.+++.+.+ |.++.+|+..
T Consensus 165 ~~~~aa~~l~~~~-~~vVv~kG~~~~i~~~~~--~~~~~~~--~~~~~~~~GaGD~lag~iaa~la~---g~~~~~A~~~ 236 (272)
T TIGR00196 165 DRLEAAQDIAQKL-QAVVVLKGAADVIAAPDG--DLWINKT--GNAALAKGGTGDVLAGLIGGLLAQ---NLDPFDAACN 236 (272)
T ss_pred hHHHHHHHHHHHh-CCEEEEcCCCCEEEcCCC--eEEEECC--CCCccCCCCchHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 7788888888863 458888999998665333 3555443 456788999999966666666668 9999999977
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.28 E-value=1.4e-10 Score=107.16 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHh------hccCccEEEEeCCCCH---HHHHHHHHHhhhhccCC--cEEEEecCC--C--CC-------
Q psy8082 129 TYLSASDIDAAKN------LLLKAKVIMFQGETPW---ETTLYCLSKLHVSLESR--AKIIVNPSP--A--VY------- 186 (379)
Q Consensus 129 ~~l~~~~l~~~~~------~l~~~~~v~~~~~~~~---~~~~~~~~~a~~~~~~~--~~v~~D~~~--~--~~------- 186 (379)
....++++..+.+ .+..+|.++.+--.+. ..+..+++.. ++.+ ..+++||-- . ..
T Consensus 51 ~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~v---k~~~P~~~~l~DPVMGD~gglYV~~~~~~ 127 (281)
T COG2240 51 IVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAV---KEANPNALYLCDPVMGDPGGLYVAPEVAE 127 (281)
T ss_pred cCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHH---hccCCCeEEEeCCcccCCCceeeccchHH
Confidence 3455666665543 3566777766533333 3445566666 5554 447889851 1 11
Q ss_pred CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC-----ceEEEecCCC-ceEEEccC
Q psy8082 187 PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS-----GVVYATRDNP-RLKTITVD 260 (379)
Q Consensus 187 ~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~-----G~~~~~~~~~-~~~~~~~~ 260 (379)
....++++.||++.||.-|++.|+|..+++.++..++++.|.++|+++|+||.=.. |.+++..... ...|+.+
T Consensus 128 ~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~- 206 (281)
T COG2240 128 AYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHISP- 206 (281)
T ss_pred HHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhhh-
Confidence 12237899999999999999999999999999999999999999999999996443 4555554421 1223211
Q ss_pred CCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 261 HVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 261 ~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
.+ ..+++|.||.|+|.|++++++ |.++++|+..
T Consensus 207 -~v-~~~~~GtGDL~sallla~lL~---g~~~~~al~~ 239 (281)
T COG2240 207 -LV-PFIPNGTGDLFSALLLARLLE---GLSLTQALER 239 (281)
T ss_pred -cC-CCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH
Confidence 11 234999999999999999999 9999999999
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.13 E-value=1.6e-08 Score=96.62 Aligned_cols=219 Identities=11% Similarity=0.142 Sum_probs=137.8
Q ss_pred eeEEEEecCChhHHH-HHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH-hhcc-
Q psy8082 68 VALISKLGNDKFGKS-YLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK-NLLL- 144 (379)
Q Consensus 68 v~lvs~vG~D~~g~~-i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~-~~l~- 144 (379)
...++--|.|..|.. |...++-.....+. ...-.+++...+..|-..+ ..++++.+..-. .+++
T Consensus 5 p~VLtIAGsDpsGGAGiqADlkt~~alGv~------g~sviTalTaQnt~~V~~v-------~~v~~~~i~~Ql~all~D 71 (321)
T PTZ00493 5 SNILSIAGSDSCGGAGMQADIKTAMGLGCH------CCTALVVLTAQNTKEVKRI-------VEIEEKFIVEQLDSIFAD 71 (321)
T ss_pred CEEEEEeeeCCCCchHHHHHHHHHHHcCCc------cceEEEEEEEEcCCceEEE-------EECCHHHHHHHHHHHHhC
Confidence 456777888876643 66666541111111 1112223333333332222 224444444322 2233
Q ss_pred -CccEEEEeCCCCHHHHHHHHHHhhhhccCC------cEEEEecCC------CC-C--CCc----hhhcccCeEEEeCHH
Q psy8082 145 -KAKVIMFQGETPWETTLYCLSKLHVSLESR------AKIIVNPSP------AV-Y--PLN----PIVMILADIICINEQ 204 (379)
Q Consensus 145 -~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~------~~v~~D~~~------~~-~--~~~----~~ll~~~dil~~N~~ 204 (379)
..+++=++.-...+++..+.+.+ ++++ .++++||-- .+ . +.. +.+++++|++.||..
T Consensus 72 ~~i~aIKiGmL~s~e~i~~v~~~l---~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~ 148 (321)
T PTZ00493 72 VTIDVVKLGVLYSKKIISLVHNYI---TNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFY 148 (321)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHH---HHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHH
Confidence 35778887766777777777776 5542 248999951 11 1 112 458999999999999
Q ss_pred HHHHhhC-----CCCCChhhHHHHHHHHHh-cCCCEEEEEecCCc----------e--EEEecC--------------CC
Q psy8082 205 EAEIITD-----MKINNEEDLADCMEKLLD-MKCNTVIITLGGSG----------V--VYATRD--------------NP 252 (379)
Q Consensus 205 E~~~l~~-----~~~~~~~~~~~~~~~l~~-~g~~~vivT~G~~G----------~--~~~~~~--------------~~ 252 (379)
|++.|++ ... +.+++.++++.+.+ +|++.|+||-|... + +++.++ +.
T Consensus 149 Ea~~L~g~~~~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~ 227 (321)
T PTZ00493 149 ECKVILEALDCQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGG 227 (321)
T ss_pred HHHHHhCCCcccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccccccccccccccc
Confidence 9999998 322 35678899999986 69999999977521 1 333311 10
Q ss_pred -----ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 253 -----RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 253 -----~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
+.+.+.. +.....++.|.||+|++++++.|++ |+++++|++. |..+- ..+.
T Consensus 228 ~~~~~~~~~~~~-~ri~~~~~hGTGc~fASAIAa~LA~---G~~l~~Av~~---------A~~fv~~aI~ 284 (321)
T PTZ00493 228 VTYLYDVYKLRS-KRKPGKDIHGTGCTLSTAIACYLAK---KHNILQSCIE---------SKKYIYNCIR 284 (321)
T ss_pred ccccceEEEEEe-cccCCCCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHH
Confidence 1244555 4555567899999999999999999 9999999999 87766 5554
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.98 E-value=2.1e-08 Score=93.94 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=107.2
Q ss_pred CCCCCHHHHHHHHhhccCccEEEEeC-CCCHHH---HHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcc--cC
Q psy8082 128 NTYLSASDIDAAKNLLLKAKVIMFQG-ETPWET---TLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI--LA 196 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~l~~~~~v~~~~-~~~~~~---~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~--~~ 196 (379)
-+...++++.+ .++.++.+++.. ....+. +..+++.+ ++.+.++++||..... +....+++ ++
T Consensus 40 ~m~~~~~e~~~---~~~~~~alvi~~G~l~~~~~~~i~~~~~~a---~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~ 113 (263)
T PRK09355 40 AMAHAPEEAEE---MAKIAGALVINIGTLTEERIEAMLAAGKIA---NEAGKPVVLDPVGVGATSYRTEFALELLAEVKP 113 (263)
T ss_pred ccCCCHHHHHH---HHHhcCceEEeCCCCCHHHHHHHHHHHHHH---HhcCCCEEECCcccCcchhhHHHHHHHHHhcCC
Confidence 34455555554 367888888863 333333 44455556 7788999999975422 11123443 68
Q ss_pred eEEEeCHHHHHHhhCCCCC--------ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccC
Q psy8082 197 DIICINEQEAEIITDMKIN--------NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIES 268 (379)
Q Consensus 197 dil~~N~~E~~~l~~~~~~--------~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDt 268 (379)
++++||..|+..|++.... +.++..+.++.+.++....+++|-+.+ ++++++ +.+.++. .....-+.
T Consensus 114 ~vItPN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~d--~I~~~~--~~~~~~~-g~~~~~~v 188 (263)
T PRK09355 114 AVIRGNASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEVD--YITDGE--RVVSVHN-GHPLMTKV 188 (263)
T ss_pred cEecCCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCC--EEEEEeC-CCcccCCc
Confidence 9999999999999986421 234677888888887666788884432 344433 4566664 33445566
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 269 EGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 269 tGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
+|+||++.|.+++.+.. |.++.+|+..
T Consensus 189 ~GtGc~L~~~iaa~lA~---g~~~~~A~~~ 215 (263)
T PRK09355 189 TGTGCLLSAVVAAFAAV---EKDYLEAAAA 215 (263)
T ss_pred ccccHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 99999999999999999 9999999888
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.79 E-value=2.3e-07 Score=86.34 Aligned_cols=156 Identities=12% Similarity=0.012 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeC-CCCH---HHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcc--cCe
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQG-ETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI--LAD 197 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~-~~~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~--~~d 197 (379)
+.-.++++.+ .++.++.+.+.. .... +.+..+++.+ ++++.++++||..... .....+++ +++
T Consensus 36 m~~~~~e~~~---~~~~~~al~ik~G~l~~~~~~~i~~~~~~~---~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~ 109 (249)
T TIGR00694 36 MSEAEEEVAE---LAKIAGALVINIGTLDKESIEAMIAAGKSA---NELGVPVVLDPVGVGATKFRTETALELLSEGRFA 109 (249)
T ss_pred hcCCHHHHHH---HHHHcCceEEeCCCCCHHHHHHHHHHHHHH---HhcCCCEEEcccccccchhHHHHHHHHHhhcCCc
Confidence 4445555554 356788888853 2332 3445556666 7778999999975332 12234666 479
Q ss_pred EEEeCHHHHHHhhCCCC-------C-ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCC
Q psy8082 198 IICINEQEAEIITDMKI-------N-NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESE 269 (379)
Q Consensus 198 il~~N~~E~~~l~~~~~-------~-~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDtt 269 (379)
+++||..|+..|++... . +.++..+.++.+.++....|++|-+ .- ++++++ +.+.+.. .+...-..+
T Consensus 110 vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~D-~i~~~~--~~~~~~~-g~~~~~~~~ 184 (249)
T TIGR00694 110 AIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-VD-YVSDGT--SVYTIHN-GTELLGKIT 184 (249)
T ss_pred eeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-Cc-EEEeCC--EEEEECC-CChHHhCCc
Confidence 99999999999998541 1 2456777888888874446777643 32 444443 4555443 222122248
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 270 GVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 270 GAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
|.||++.|.+++.+.+ |.++.+|+..
T Consensus 185 GtGc~LssaIaa~LA~---g~~~~~A~~~ 210 (249)
T TIGR00694 185 GSGCLLGSVVAAFCAV---EEDPLDAAIS 210 (249)
T ss_pred cchHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 9999999999999999 9999999988
No 78
>KOG2599|consensus
Probab=98.67 E-value=7.6e-07 Score=81.06 Aligned_cols=164 Identities=23% Similarity=0.247 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHhh-----ccCccEEEEeCCCC---HHHHHHHHHHhhhhccC--CcEEEEecC--CCCC--------CC
Q psy8082 129 TYLSASDIDAAKNL-----LLKAKVIMFQGETP---WETTLYCLSKLHVSLES--RAKIIVNPS--PAVY--------PL 188 (379)
Q Consensus 129 ~~l~~~~l~~~~~~-----l~~~~~v~~~~~~~---~~~~~~~~~~a~~~~~~--~~~v~~D~~--~~~~--------~~ 188 (379)
...+++++.++.+. +..++.++.+--.. ...+..+.+.. ++. +...++||- +..+ +.
T Consensus 60 ~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~l---k~~np~~~wv~DPVmGDnG~lYV~eelipv 136 (308)
T KOG2599|consen 60 QVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKL---KKKNPNLTWVCDPVMGDNGRLYVPEELIPV 136 (308)
T ss_pred cccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHH---HhcCCCeEEEeCccccCCccEeccHHHHHH
Confidence 44566676665432 34566665432222 23344455544 444 455567885 1111 12
Q ss_pred ch-hhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC----c-eEE---EecCCCceEEEcc
Q psy8082 189 NP-IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS----G-VVY---ATRDNPRLKTITV 259 (379)
Q Consensus 189 ~~-~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~----G-~~~---~~~~~~~~~~~~~ 259 (379)
.+ .+.+.||++.||.-|++.|+|..+.+.++..+++++|+++|++.||||..+- | .++ ...+. +.+.+..
T Consensus 137 Yr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~-~~f~~~i 215 (308)
T KOG2599|consen 137 YRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGS-ERFRYLI 215 (308)
T ss_pred HHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCC-ceEEEEe
Confidence 22 3455699999999999999999999999999999999999999999997653 3 111 22222 4444444
Q ss_pred CCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 260 DHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 260 ~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
|.... =-||.||.|+|-+++-+....+..++..|+..
T Consensus 216 -pki~~-~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~ 252 (308)
T KOG2599|consen 216 -PKIDG-VFTGTGDLFSALLLAWLHESPDNDDLSKAVEQ 252 (308)
T ss_pred -cccce-EEecccHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 33322 35899999999888887662112445555544
No 79
>KOG2598|consensus
Probab=98.59 E-value=5.9e-07 Score=86.61 Aligned_cols=170 Identities=19% Similarity=0.139 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHhh-cc--CccEEEEeCCCCHHHHHHHHHHhhhhccCC-cEEEEecCC------CCC------CCchhhc
Q psy8082 130 YLSASDIDAAKNL-LL--KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPSP------AVY------PLNPIVM 193 (379)
Q Consensus 130 ~l~~~~l~~~~~~-l~--~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~D~~~------~~~------~~~~~ll 193 (379)
.+.++.+.+..+. |+ +|+++-.++-..+++..-+.+.+ .+.+ .++++||-- .+. -..++++
T Consensus 74 ~lpp~~V~qqidacL~Di~C~VvKTGML~~~~I~~vi~q~l---~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~ 150 (523)
T KOG2598|consen 74 LLPPSFVSQQIDACLSDIKCDVVKTGMLPSPEIVKVIEQSL---QKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELL 150 (523)
T ss_pred cCCHHHHHHHHHHHhhcCcccEEeecCcCchHHHHHHHHHH---HhhcCcceeecceEEeccCCcccCCccHHHHHHHhh
Confidence 3555555543211 22 47788777766777776666666 4444 567888841 111 2457899
Q ss_pred ccCeEEEeCHHHHHHhhCC------CCCChhhHHHHHHHHHhcCCCEEEEEecCCc----------------e-EEEecC
Q psy8082 194 ILADIICINEQEAEIITDM------KINNEEDLADCMEKLLDMKCNTVIITLGGSG----------------V-VYATRD 250 (379)
Q Consensus 194 ~~~dil~~N~~E~~~l~~~------~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G----------------~-~~~~~~ 250 (379)
|.+|++.||..|+-.|++. ++.+-.|+...+.++.+.|++.|+|+.|.-. . ++|.+.
T Consensus 151 P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~ 230 (523)
T KOG2598|consen 151 PFADILTPNIPEAFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGK 230 (523)
T ss_pred hhHHHhCCChHHHHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecc
Confidence 9999999999999999983 2456678888899999999999999987522 1 233333
Q ss_pred CCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 251 ~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+.+.++. +-..--.+.|.|-+.++++++.|+. |.++.+|++. |...- ..++.
T Consensus 231 --~F~~f~~-~~~~t~~tHGtgCtLaSAIASnLA~---g~sl~qAv~~---------ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 231 --EFYIFKS-PYLATKHTHGTGCTLASAIASNLAR---GYSLLQAVQG---------AIEYVQNAIAI 283 (523)
T ss_pred --eEEEecc-cccccccccCccchHHHHHHHHHhh---cCCHHHHHHH---------HHHHHHHHHHh
Confidence 6788887 6667789999999999999999999 9999999999 77666 55543
No 80
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.94 E-value=0.0011 Score=66.13 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=105.1
Q ss_pred cEEEecCChHHHHHHHHHHCCCCeeE--EEEecCChhHHHHHHHHhhhcCC----------------------cccceee
Q psy8082 45 HFEQRFSGKGANQCVAAAKLRASVAL--ISKLGNDKFGKSYLEELRKYNSI----------------------NTKYIWL 100 (379)
Q Consensus 45 ~~~~~~GG~a~nvA~~l~~LG~~v~l--vs~vG~D~~g~~i~~~l~~~~gi----------------------~~~~i~~ 100 (379)
....+.||.+.-+|..++.+|.++.+ +..++. ...+.+.+ .+| +-+.+++
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~lsk-----~q~~lf~~-~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~ 158 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASRVVPNVAVPSK-----TQLSLFSK-KAVYFPGMPLQASETDGEKVGASSSDQEPIHF 158 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEcCCCCCH-----HHHHhcCC-CCEEeccccccccccCccccccccCCCCCceE
Confidence 44688999999999999999998644 333332 22222311 111 1111222
Q ss_pred eCCcCceeEE-----EEEcCCCceeEEecCCcCCCC-CHHHHH-HHHhhccCccEEEEeCCCC-----------HHHHHH
Q psy8082 101 LQDVTTGVCS-----KVISNKGTHQTNIIPGANTYL-SASDID-AAKNLLLKAKVIMFQGETP-----------WETTLY 162 (379)
Q Consensus 101 ~~~~~T~~~~-----~~~~~~g~~~~~~~~~~~~~l-~~~~l~-~~~~~l~~~~~v~~~~~~~-----------~~~~~~ 162 (379)
.-+.+.+..+ .+..+...|-+...+..+..+ ..+++. .+.+...+.|.++++|... .+.+.+
T Consensus 159 IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~ 238 (453)
T PRK14039 159 VFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLED 238 (453)
T ss_pred EEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHH
Confidence 2223333333 123333344444444334333 223333 3333345799999987421 233333
Q ss_pred HHHHhhh--hccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCC--------CChhhHHHHHHHH
Q psy8082 163 CLSKLHV--SLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKI--------NNEEDLADCMEKL 227 (379)
Q Consensus 163 ~~~~a~~--~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~--------~~~~~~~~~~~~l 227 (379)
+.+.... .+..+.++-+....... ..+..+++.+|.+-+|++|+..+...-. .+.+++.+++..|
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l 318 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQL 318 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHH
Confidence 3333300 02345677787765433 3455789999999999999999876621 2466778888888
Q ss_pred Hhc-CCCEEEEE
Q psy8082 228 LDM-KCNTVIIT 238 (379)
Q Consensus 228 ~~~-g~~~vivT 238 (379)
++. |++.+.|.
T Consensus 319 ~~~~~le~l~vH 330 (453)
T PRK14039 319 ASESGLQRLIIH 330 (453)
T ss_pred HHHcCCCEEEEE
Confidence 775 88766554
No 81
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.87 E-value=0.00041 Score=71.03 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=91.6
Q ss_pred ccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChh-h
Q psy8082 143 LLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEE-D 219 (379)
Q Consensus 143 l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~-~ 219 (379)
++.++.+.++.-. ..+....+++.+ ++.+.++++|+..... ..... .....+++||.-|+..|++....+.+ +
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~---~~~~~P~VLDAdaL~ll~~~~~-~~~~~VLTPh~gE~~rL~~~~~~~v~~~ 393 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKV---ENFRKPMLWDADALNLLAINPD-KRHNRVITPHPGEAARLLGCSVAEIESD 393 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHH---HhcCCCEEEEchHHHHHhhCcc-ccCCeEECCCHHHHHHHhCCChhhhhhh
Confidence 5678999997433 223445566777 7778999999975211 00001 11257999999999999985432211 3
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 220 LADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 220 ~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
..+.++.+.++....|++ .|..- ++.++++ +.+..+. -....-++|.||..+|.+.+-+.+ |.++.+|...
T Consensus 394 ~~~~a~~~a~~~~~~vvl-KG~~~-iI~~~~~-~~~~~~~--G~~~ma~~GsGDvLaGiIaalla~---g~~~~~Aa~~ 464 (508)
T PRK10565 394 RLLSARRLVKRYGGVVVL-KGAGT-VIAAEPD-ALAIIDV--GNAGMASGGMGDVLSGIIGALLGQ---KLSPYDAACA 464 (508)
T ss_pred HHHHHHHHHHHhCCEEEE-eCCCc-EEEcCCc-eEEEECC--CCCCCCCCChHHHHHHHHHHHHHc---CCCHHHHHHH
Confidence 445566666654334554 55543 4444432 3444443 334556799999999988888888 9899888888
No 82
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.82 E-value=0.0009 Score=61.69 Aligned_cols=156 Identities=12% Similarity=0.122 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHhhccCccEEEEe-CCCCH---HHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhc--ccCe
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQ-GETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVM--ILAD 197 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~-~~~~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll--~~~d 197 (379)
+.-.+++..++ .+.++.++++ |.+.. +.+..+.+.+ .+.++|+++||-.... +...+++ -+.+
T Consensus 36 Ma~~~~E~~e~---~~~a~al~iNiGTl~~~~~~~m~~A~~~A---~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~ 109 (246)
T PF02110_consen 36 MAEAPEEVEEF---ASIADALVINIGTLTDERIEAMKKAAKAA---NELGIPVVLDPVGVGASKFRTEFALELLNNYKPT 109 (246)
T ss_dssp E--STTTHHHH---HHCTSEEEEESTTSSHHHHHHHHHHHHHH---HHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--S
T ss_pred ccCCHHHHHHH---HHHcCEEEEECCCCCHhHHHHHHHHHHHH---HHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCc
Confidence 33445555543 5578888887 44443 5566677777 8899999999975432 3445666 3689
Q ss_pred EEEeCHHHHHHhhCCCCC--------ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCC
Q psy8082 198 IICINEQEAEIITDMKIN--------NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESE 269 (379)
Q Consensus 198 il~~N~~E~~~l~~~~~~--------~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDtt 269 (379)
+++.|..|...|.+.... +..+..+.++.+.++.-..|++ .|+.-.+ .++. +.+.++. -..-.-.-|
T Consensus 110 vIrGN~sEI~aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvv-TG~~D~I-sdg~--~~~~i~n-G~~~l~~it 184 (246)
T PF02110_consen 110 VIRGNASEIAALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVV-TGEVDYI-SDGN--RVYRIPN-GSPLLSKIT 184 (246)
T ss_dssp EEEEEHHHHHHHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEE-ESSSEEE-EESS--CEEEECS-SSGGGGGST
T ss_pred EEEeCHHHHHHHhCcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEE-ecCCcEE-ECCC--eEEEeCC-CChHhccee
Confidence 999999999999987521 1233567777787764444444 4665544 2333 5777776 444455679
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 270 GVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 270 GAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
|.|+...+-+++.+.. ..++-+|...
T Consensus 185 GtGC~lgaliaaf~av---~~d~~~aa~~ 210 (246)
T PF02110_consen 185 GTGCMLGALIAAFLAV---AEDPLEAAVA 210 (246)
T ss_dssp THHHHHHHHHHHHHCC---CSSHHHHHHH
T ss_pred ccchHHHHHHHHHHhc---cccchHHHHH
Confidence 9999887777666666 5666665544
No 83
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.79 E-value=0.001 Score=66.43 Aligned_cols=186 Identities=15% Similarity=0.095 Sum_probs=99.7
Q ss_pred EEecCChHHHHHHHHHHCCCCe--eEEEEecCChhHHHHHHHHhhhcCCcc--------------------c--ceeeeC
Q psy8082 47 EQRFSGKGANQCVAAAKLRASV--ALISKLGNDKFGKSYLEELRKYNSINT--------------------K--YIWLLQ 102 (379)
Q Consensus 47 ~~~~GG~a~nvA~~l~~LG~~v--~lvs~vG~D~~g~~i~~~l~~~~gi~~--------------------~--~i~~~~ 102 (379)
..+.||.+.-+|..++++|.++ .++..++.. ..+.+....++-. + .+++.-
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk~-----qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSKK-----QAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCHH-----HHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 3578999999999999999873 444445543 2222211001100 0 011111
Q ss_pred CcCceeEE-----EEEcCCCceeEEecCCcCCCC-CHHHHHHH-HhhccCccEEEEeCCCC--------------HHHHH
Q psy8082 103 DVTTGVCS-----KVISNKGTHQTNIIPGANTYL-SASDIDAA-KNLLLKAKVIMFQGETP--------------WETTL 161 (379)
Q Consensus 103 ~~~T~~~~-----~~~~~~g~~~~~~~~~~~~~l-~~~~l~~~-~~~l~~~~~v~~~~~~~--------------~~~~~ 161 (379)
+.+.+..+ .+..+...|-++..+..+..+ ..+++... .++-...|.++++|... .+...
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~ 252 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAK 252 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHHH
Confidence 22333333 222233333343333333333 22334332 23236799999987321 11222
Q ss_pred HHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCC-----------CCChhhHHHHHH
Q psy8082 162 YCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-----------INNEEDLADCME 225 (379)
Q Consensus 162 ~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~-----------~~~~~~~~~~~~ 225 (379)
+.++... ++..+.++-+....... ..+..+++.+|.+-+|++|+..+...- .++.+++.+++.
T Consensus 253 ~~i~~L~-~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~ 331 (463)
T PRK03979 253 EDIKLLK-KKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAK 331 (463)
T ss_pred HHHHHHh-hCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHH
Confidence 3333230 12346777787765432 344578899999999999999765321 123567888888
Q ss_pred HHHhc-CCCEEEEE
Q psy8082 226 KLLDM-KCNTVIIT 238 (379)
Q Consensus 226 ~l~~~-g~~~vivT 238 (379)
.|++. +++.+.|.
T Consensus 332 ~L~~~~~leri~vH 345 (463)
T PRK03979 332 ILLDELNLERVQVH 345 (463)
T ss_pred HHHHHcCCCEEEEE
Confidence 88774 87765554
No 84
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.73 E-value=0.0033 Score=62.53 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=100.3
Q ss_pred EecCChHHHHHHHHHHCCCCe--eEEEEecCChhHHHHHHHHhhhc-CCc----------------------ccceeeeC
Q psy8082 48 QRFSGKGANQCVAAAKLRASV--ALISKLGNDKFGKSYLEELRKYN-SIN----------------------TKYIWLLQ 102 (379)
Q Consensus 48 ~~~GG~a~nvA~~l~~LG~~v--~lvs~vG~D~~g~~i~~~l~~~~-gi~----------------------~~~i~~~~ 102 (379)
.+.||.|.-+|..++++|.++ .++..++.. ..+.+.+ . ++- -..+++.-
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~~-----qa~lf~~-~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~ 159 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSKR-----QAEMFVA-TGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIF 159 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCHH-----HHHHhCC-cCceeeccccCCceeeccchhccCCCCCCceEEEE
Confidence 578999999999999999874 344445532 2222322 1 010 00011111
Q ss_pred CcCceeEE-----EEEcCCCceeEEecCCcCCCC-CHHHHHHHH-hhccCccEEEEeCCCC--------------HHHHH
Q psy8082 103 DVTTGVCS-----KVISNKGTHQTNIIPGANTYL-SASDIDAAK-NLLLKAKVIMFQGETP--------------WETTL 161 (379)
Q Consensus 103 ~~~T~~~~-----~~~~~~g~~~~~~~~~~~~~l-~~~~l~~~~-~~l~~~~~v~~~~~~~--------------~~~~~ 161 (379)
+.+.+..+ .+..+...|-++..+..+..+ ..+++.... ++-+.+|.++++|... .+...
T Consensus 160 Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~ 239 (446)
T TIGR02045 160 EFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAK 239 (446)
T ss_pred EeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHH
Confidence 22233332 222333333333333333333 223333332 2346799999987321 12233
Q ss_pred HHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhC---CC--------CCChhhHHHHHH
Q psy8082 162 YCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITD---MK--------INNEEDLADCME 225 (379)
Q Consensus 162 ~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~---~~--------~~~~~~~~~~~~ 225 (379)
+.++... ...+.++-+....... ..+..+++.+|.+-+|++|+..+.. .. .++.+++.+++.
T Consensus 240 ~~i~~L~--~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~ 317 (446)
T TIGR02045 240 EDIELLK--KNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAK 317 (446)
T ss_pred HHHHHHh--hCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHH
Confidence 4444441 2256777787765432 3445788999999999999999763 21 123567778887
Q ss_pred HHHhc-CCCEEEEEe
Q psy8082 226 KLLDM-KCNTVIITL 239 (379)
Q Consensus 226 ~l~~~-g~~~vivT~ 239 (379)
.|++. |++.+.|..
T Consensus 318 ~l~~~~~leri~vHT 332 (446)
T TIGR02045 318 ILLDELNLEVVQVHT 332 (446)
T ss_pred HHHHHcCCCEEEEEe
Confidence 77774 877665543
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.45 E-value=0.0077 Score=60.04 Aligned_cols=185 Identities=14% Similarity=0.045 Sum_probs=102.1
Q ss_pred EEecCChHHHHHHHHHH-CCCCeeEEEEecCChhHHHHHHHHhhhcCC---------------------cccceeeeCCc
Q psy8082 47 EQRFSGKGANQCVAAAK-LRASVALISKLGNDKFGKSYLEELRKYNSI---------------------NTKYIWLLQDV 104 (379)
Q Consensus 47 ~~~~GG~a~nvA~~l~~-LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi---------------------~~~~i~~~~~~ 104 (379)
..+.||.+.-+|..++. .|.+| +..++... +...+.+.. .+| +-+.+++.-+.
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~ls--k~qa~lf~~-~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey 180 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQLS--KLQASLFLD-GPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEF 180 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCcc--hhhHhhccC-CCEEeccccCCcceeccchhcccCCCCccEEEEEe
Confidence 58899999999999985 45675 55555211 111111111 111 11111111122
Q ss_pred CceeEE-EEEcCCCceeEEecCCcCCCC--CHHHHHHHHhhccCccEEEEeCCCC------HHHHH---HHHHHhhhhcc
Q psy8082 105 TTGVCS-KVISNKGTHQTNIIPGANTYL--SASDIDAAKNLLLKAKVIMFQGETP------WETTL---YCLSKLHVSLE 172 (379)
Q Consensus 105 ~T~~~~-~~~~~~g~~~~~~~~~~~~~l--~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~---~~~~~a~~~~~ 172 (379)
+.+..+ .+..+...|-++..+..+..+ .++.-+.+.++..+.|.++++|... .+.+. +.++.. +.
T Consensus 181 ~~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l---~~ 257 (453)
T PRK14038 181 PRGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVL---NE 257 (453)
T ss_pred CCCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhc---Cc
Confidence 222222 223333344444444334433 3333334445567899999998431 22333 333333 44
Q ss_pred CCcEEEEecCCCCC----CCchhhcccCeEEEeCHHHHHHhhCCC-------------CCChhhHHHHHHHHHhc-CCCE
Q psy8082 173 SRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMK-------------INNEEDLADCMEKLLDM-KCNT 234 (379)
Q Consensus 173 ~~~~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~~~l~~~~-------------~~~~~~~~~~~~~l~~~-g~~~ 234 (379)
.++++-++...... +.+..+++.+|-+-+|++|+..+...- +.+.+++.+++.+|++. |++.
T Consensus 258 ~~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gler 337 (453)
T PRK14038 258 RGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKR 337 (453)
T ss_pred CCceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCE
Confidence 57778787764321 222358899999999999999887521 12567888888888885 8887
Q ss_pred EEEEe
Q psy8082 235 VIITL 239 (379)
Q Consensus 235 vivT~ 239 (379)
+.|..
T Consensus 338 i~vHT 342 (453)
T PRK14038 338 IHFHT 342 (453)
T ss_pred EEEEe
Confidence 66654
No 86
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.42 E-value=0.005 Score=56.53 Aligned_cols=158 Identities=12% Similarity=0.099 Sum_probs=99.5
Q ss_pred cCCCCCHHHHHHHHhhccCccEEEEe-CCCC---HHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhccc--
Q psy8082 127 ANTYLSASDIDAAKNLLLKAKVIMFQ-GETP---WETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMIL-- 195 (379)
Q Consensus 127 ~~~~l~~~~l~~~~~~l~~~~~v~~~-~~~~---~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~-- 195 (379)
+-+...++++.++ .+-++.++++ |... .+.+..+.+.+ .+.+.|+++||-.... +...+++++
T Consensus 40 P~Ma~~~eE~~e~---~kia~AL~INIGTL~~~~~~~m~~A~~~A---n~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~ 113 (265)
T COG2145 40 PVMADAPEEVEEF---AKIADALLINIGTLSAERIQAMRAAIKAA---NESGKPVVLDPVGVGATKFRTKFALELLAEVK 113 (265)
T ss_pred chhccCHHHHHHH---HHhccceEEeeccCChHHHHHHHHHHHHH---HhcCCCEEecCccCCchHHHHHHHHHHHHhcC
Confidence 3455556666654 5567777775 4443 35567777788 9999999999975432 344566653
Q ss_pred CeEEEeCHHHHHHhhCCCC--------CChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCccc
Q psy8082 196 ADIICINEQEAEIITDMKI--------NNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIE 267 (379)
Q Consensus 196 ~dil~~N~~E~~~l~~~~~--------~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvD 267 (379)
.++++.|..|...|.|... .+..+..+.++.+.+..- .+++-.|+.-++. +++ +.+.+.. -..-.-.
T Consensus 114 ~~~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~-~vvvvTG~vD~Is-dg~--~~~~i~n-G~pll~~ 188 (265)
T COG2145 114 PAAIRGNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKYG-TVVVVTGEVDYIS-DGT--RVVVIHN-GSPLLGK 188 (265)
T ss_pred CcEEeccHHHHHHHhcccccccccccccchhhHHHHHHHHHHHhC-cEEEEECCeeEEE-cCC--eEEEEEC-CCcHHhh
Confidence 7999999999999987642 233566677766665432 3444446554332 222 4555554 3343446
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCC-HHHHHhh
Q psy8082 268 SEGVGDCFVGALAYYFKAGQKGGN-LDSCRLR 298 (379)
Q Consensus 268 ttGAGDaF~ag~~~~l~~~~~g~~-l~~A~~~ 298 (379)
-||+|+...|...+.+.. ..+ .-+|..-
T Consensus 189 ItGtGCllgav~aaF~av---~~d~~~~A~~~ 217 (265)
T COG2145 189 ITGTGCLLGAVVAAFLAV---EKDPLLDAAAE 217 (265)
T ss_pred hhccccHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 799998887777766666 566 3444443
No 87
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.39 E-value=0.0013 Score=60.88 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=92.3
Q ss_pred hhccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCch--hhcccCeEEEeCHHHHHHhhCCCCCCh
Q psy8082 141 NLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNP--IVMILADIICINEQEAEIITDMKINNE 217 (379)
Q Consensus 141 ~~l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~--~ll~~~dil~~N~~E~~~l~~~~~~~~ 217 (379)
+.++++|.+.+..-. ..+...++++.+ .+...++++|...... ... ...+...|++|+.-|+..|++......
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~---~~~~~p~VlDADaL~~-l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~ 138 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEEL---LESDKPLVLDADALNL-LAENPKKRNAPVILTPHPGEFARLLGKSVEIQ 138 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHH---HHHCSTEEEECHHHHC-HHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHC
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHH---HhhcceEEEehHHHHH-HHhccccCCCCEEECCCHHHHHHHhCCcccch
Confidence 347899999997432 223334455555 4556679999973221 001 334567799999999999999864322
Q ss_pred hhHHHHHHHHHhc-CCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHH
Q psy8082 218 EDLADCMEKLLDM-KCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCR 296 (379)
Q Consensus 218 ~~~~~~~~~l~~~-g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~ 296 (379)
++..+.++.+.++ ++ ++|-.|..-.++..++ +.+..+. ...-.-+-|.||..+|-+..-+.+ +.++.+|.
T Consensus 139 ~~~~~~a~~~a~~~~~--~vvLKG~~t~I~~p~~--~~~~n~~--gn~~la~gGsGDvLaGii~~llaq---~~~~~~Aa 209 (242)
T PF01256_consen 139 EDRIEAAREFAKEYGA--VVVLKGAVTIIASPGG--RVYVNPT--GNPGLATGGSGDVLAGIIAGLLAQ---GYDPFEAA 209 (242)
T ss_dssp CSHHHHHHHHHHHHTS--EEEEESTSSEEEEETS--EEEEE------GGGSSTTHHHHHHHHHHHHHHH---TSSHHHHH
T ss_pred hhHHHHHHHHHhhcCc--EEEEeCCCcEEEecCc--ceeEeCC--CCCCCCCCCcccHHHHHHHHHHHc---cCCHHHHH
Confidence 3556666666654 43 5666667665554443 4555554 345568899999999888888888 99999999
Q ss_pred hh
Q psy8082 297 LR 298 (379)
Q Consensus 297 ~~ 298 (379)
..
T Consensus 210 ~~ 211 (242)
T PF01256_consen 210 CL 211 (242)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 88
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=96.84 E-value=0.011 Score=59.49 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=85.4
Q ss_pred EecCChHHHHHHHHHHCCC-CeeEEEEecCChhHHHHHHHHhhhcCCccc----------------------ceeeeCCc
Q psy8082 48 QRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSINTK----------------------YIWLLQDV 104 (379)
Q Consensus 48 ~~~GG~a~nvA~~l~~LG~-~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~----------------------~i~~~~~~ 104 (379)
.+.||.|.-+|..++.++. +|.+.+.++... +.+.+ + .+|-.. .+++.-+.
T Consensus 92 ~r~GGnA~imAn~la~l~~~~Vil~~p~~sk~----~~~l~-~-~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy 165 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGCPVILYAPILSKE----QAELF-N-DNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEY 165 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-SEEEEE-SS--HH----HHTTS-S-SSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE
T ss_pred cccCchHHHHHHHHHhCCCCEEEEecCcCCHH----HHHhc-c-cCcccccccCCcccccCchhccccCCccceEEEEEc
Confidence 3589999999999997854 555666566543 23333 2 122110 01110011
Q ss_pred CceeEE-EEEcCCCceeEEecCCcCCCCC--HHHHHHHHhhccCccEEEEeCCCC-----------HHH---HHHHHHHh
Q psy8082 105 TTGVCS-KVISNKGTHQTNIIPGANTYLS--ASDIDAAKNLLLKAKVIMFQGETP-----------WET---TLYCLSKL 167 (379)
Q Consensus 105 ~T~~~~-~~~~~~g~~~~~~~~~~~~~l~--~~~l~~~~~~l~~~~~v~~~~~~~-----------~~~---~~~~~~~a 167 (379)
+.+..+ -+..+...|-++..+..+..+. ++..+.+.+...+.|.++++|.-. .+. +.+.++.+
T Consensus 166 ~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l 245 (444)
T PF04587_consen 166 KKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLL 245 (444)
T ss_dssp -TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHH
T ss_pred CCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhc
Confidence 111111 1111222333333343344333 332233334457799999987321 122 23333344
Q ss_pred hhhc-cCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCC----------C---hhhHHHHHHHHH
Q psy8082 168 HVSL-ESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKIN----------N---EEDLADCMEKLL 228 (379)
Q Consensus 168 ~~~~-~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~----------~---~~~~~~~~~~l~ 228 (379)
+ ..+.++-+....... .....+++++|.+-+|++|+..+...-.. + ...+.+...+|.
T Consensus 246 ---~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~v~~~~v~~~~~~L~ 322 (444)
T PF04587_consen 246 ---KSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLLSVLGGPELSERIDSYPRVEVDQVLEALIWLL 322 (444)
T ss_dssp ---H-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHHHTT-HHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred ---cCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHHHHhCCCccccccccCCCccHHHHHHHHHHHH
Confidence 4 578888888876543 34457899999999999999987442210 1 112455666676
Q ss_pred hc-CCCEEEEE
Q psy8082 229 DM-KCNTVIIT 238 (379)
Q Consensus 229 ~~-g~~~vivT 238 (379)
+. ++..+.|.
T Consensus 323 ~~~~l~RIhvH 333 (444)
T PF04587_consen 323 KEYGLTRIHVH 333 (444)
T ss_dssp HHH--SEEEEE
T ss_pred HHcCCCEEEEE
Confidence 64 77755443
No 89
>KOG3974|consensus
Probab=96.77 E-value=0.036 Score=50.85 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=96.8
Q ss_pred hccCccEEEEeCCC-----CHHHHHHHHHHhhhhccCCcEEEEecCCCCC--CCchhhcc--cCeEEEeCHHHHHHhhCC
Q psy8082 142 LLLKAKVIMFQGET-----PWETTLYCLSKLHVSLESRAKIIVNPSPAVY--PLNPIVMI--LADIICINEQEAEIITDM 212 (379)
Q Consensus 142 ~l~~~~~v~~~~~~-----~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~--~~~~~ll~--~~dil~~N~~E~~~l~~~ 212 (379)
.+..-.++++..-. ....+.++++.+ ++.++|+++|....+- +....++. ...|++||.-|+..|++.
T Consensus 98 ~L~RlhavVIGPGLGRdp~~~k~i~~iley~---~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~ 174 (306)
T KOG3974|consen 98 LLQRLHAVVIGPGLGRDPAILKEIAKILEYL---RGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDA 174 (306)
T ss_pred HHhheeEEEECCCCCCCHHHHHHHHHHHHHH---hcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHH
Confidence 47788888886422 245677888999 9999999999975431 22222322 246899999999999987
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc-CCCCC
Q psy8082 213 KINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG-QKGGN 291 (379)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~-~~g~~ 291 (379)
...+ .+-...+..|...=.+..+|-.|+.-. +.+++. +....+. +-...-.-|-||..+|.++.-+..+ ....+
T Consensus 175 ~l~~-~d~~~~~~~L~~~l~nv~vvqKG~~D~-ils~~~-ev~~~s~--eGs~kRcGGQGDiLaGsla~fl~w~k~~~~e 249 (306)
T KOG3974|consen 175 ELDK-VDSHSQMQHLAAELMNVTVVQKGESDK-ILSPDS-EVRVCST--EGSLKRCGGQGDILAGSLATFLSWAKLLSGE 249 (306)
T ss_pred hhcc-ccchHHHHHHHHHhcCeEEEEecCCce-eeCCCC-eeEEccC--CCCccccCCCcchhhhHHHHHHHHHHhccCC
Confidence 4321 222233334433223457777787766 444443 3333332 3344566788999998887665431 11334
Q ss_pred HHHHHhhccCCcccHHHHHHH-HHHhccc
Q psy8082 292 LDSCRLRNGRGILKELQCLVA-RRVQLEG 319 (379)
Q Consensus 292 l~~A~~~~~~~~~~~~A~~~A-~~v~~~G 319 (379)
+.++... |..++ ..+.+.|
T Consensus 250 ~~~~~~~---------a~~a~s~~vr~a~ 269 (306)
T KOG3974|consen 250 QDSAAFL---------AAVAGSIMVRRAG 269 (306)
T ss_pred ccchhhh---------hhhhhHHHHHHHH
Confidence 4455555 66666 5554444
No 90
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.29 Score=46.29 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=81.0
Q ss_pred ccCccEEEEeCCC-CHHHHHHHHHHhhhhccCC-cEEEEecCCCC-CCCchhhc-ccCeEEEeCHHHHHHhhCCCCCCh-
Q psy8082 143 LLKAKVIMFQGET-PWETTLYCLSKLHVSLESR-AKIIVNPSPAV-YPLNPIVM-ILADIICINEQEAEIITDMKINNE- 217 (379)
Q Consensus 143 l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~-~~v~~D~~~~~-~~~~~~ll-~~~dil~~N~~E~~~l~~~~~~~~- 217 (379)
.+.+|.+.++.-. ..+...++++.. .+.. +++++|...-. -.....+. ....|++|..-|++.|++.+..+.
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~---l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~~~~~~~ 175 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKEL---LSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLGTEVDEIE 175 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHH---HhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCCcccccc
Confidence 5789999997322 223233333333 2333 88999997432 00111222 223799999999999999644332
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCC-CHHHHH
Q psy8082 218 EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGG-NLDSCR 296 (379)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~-~l~~A~ 296 (379)
.+-.++++.+.++.-. +||=.|..-++.. +++ +.+..+. -..-.-+=|.||+.+|-+.+-|.+ +. ++.+|+
T Consensus 176 ~~r~~~a~~~a~~~~~-vvVLKG~~tvI~~-~~g-~~~~n~~--G~~~ma~GGtGDvLaGii~alLAq---~~~~~~~Aa 247 (284)
T COG0063 176 VDRLEAARELAAKYGA-VVVLKGAVTVIAD-PDG-EVFVNPT--GNPGMATGGTGDVLAGIIGALLAQ---GPADPLEAA 247 (284)
T ss_pred cchHHHHHHHHHHcCC-EEEEeCCCCEEEc-CCC-cEEEcCC--CCHHhccCcchHHHHHHHHHHHhC---CCCCHHHHH
Confidence 3445666666654333 5555566555443 332 3333332 233456778999987666555666 41 344555
Q ss_pred hh
Q psy8082 297 LR 298 (379)
Q Consensus 297 ~~ 298 (379)
..
T Consensus 248 ~~ 249 (284)
T COG0063 248 AA 249 (284)
T ss_pred HH
Confidence 55
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=94.36 E-value=1.1 Score=45.05 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=93.5
Q ss_pred cEEEecCChHHHHHHHHHHCCC-CeeEEEEecCChhHHHHHH-HHhhhcC----CcccceeeeCCcCceeEE-EEEcCCC
Q psy8082 45 HFEQRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLE-ELRKYNS----INTKYIWLLQDVTTGVCS-KVISNKG 117 (379)
Q Consensus 45 ~~~~~~GG~a~nvA~~l~~LG~-~v~lvs~vG~D~~g~~i~~-~l~~~~g----i~~~~i~~~~~~~T~~~~-~~~~~~g 117 (379)
....+.||.+.-+|..++.+|. +|.+-+.+........+.+ .+.- .+ .+-+-++..-+.+.+..+ .+..+..
T Consensus 100 ~~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~~~L~~d~~i~~-p~~e~~~~~d~IHlIlEy~~G~~~~~~~aPra 178 (445)
T cd01938 100 WDELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQAELFLDGPIVV-PTFENLIEEDEIHLILEYPRGESWGDFVAPRA 178 (445)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHHHHhCCCCCeee-cccccCCCCCccEEEEEcCCCCEecceEcCCC
Confidence 3458899999999999999998 8887777655432211110 0000 00 111112211122222222 2223333
Q ss_pred ceeEEecCCcCC-CCCHHHHHHHHhhcc-CccEEEEeCCCC-------HHHHHHHHHHhh---hhccCCcEEEEecCCCC
Q psy8082 118 THQTNIIPGANT-YLSASDIDAAKNLLL-KAKVIMFQGETP-------WETTLYCLSKLH---VSLESRAKIIVNPSPAV 185 (379)
Q Consensus 118 ~~~~~~~~~~~~-~l~~~~l~~~~~~l~-~~~~v~~~~~~~-------~~~~~~~~~~a~---~~~~~~~~v~~D~~~~~ 185 (379)
.|-++..+..+. ...++.++.+ .+ +.|.++++|.-. ..+..+.++.+. .+....+++=|......
T Consensus 179 NRfI~~~d~~n~l~~~ee~~~~i---~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~ 255 (445)
T cd01938 179 NRFIFHDDDNNPMLMREEFFSSI---LEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELASTV 255 (445)
T ss_pred CeEEEecCCcchhhhhHHHHHHH---hhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecccc
Confidence 343433332333 2233333332 33 389999987321 223333333320 00112366767776443
Q ss_pred C-----CCchhhcccCeEEEeCHHHHHHhhCCC-----------C--CChhhHHHHHHHHHhc
Q psy8082 186 Y-----PLNPIVMILADIICINEQEAEIITDMK-----------I--NNEEDLADCMEKLLDM 230 (379)
Q Consensus 186 ~-----~~~~~ll~~~dil~~N~~E~~~l~~~~-----------~--~~~~~~~~~~~~l~~~ 230 (379)
. ..+..+++++|-+-+|++|+..+...- . ++..+..+.+.++++.
T Consensus 256 d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~~~v~~v~~~~~~l~~~ 318 (445)
T cd01938 256 DEELREEILHEVVPYVDSLGLNEQELANLLQVLGGPHLSLASWNGGPPDVGAVLDILLWLLKE 318 (445)
T ss_pred cHHHHHHHHHHhcccccccccCHHHHHHHHHHhCCCccchhhhccCCCcHHHHHHHHHHHHHH
Confidence 2 345578899999999999999886431 1 1224466667777663
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=83.38 E-value=49 Score=32.66 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=62.5
Q ss_pred CHHHHHHHHhhccCccEEEEeCCCC--------------HHHHHHHHHHhhhhcc-CCcEEEEecCCCCC-----CCchh
Q psy8082 132 SASDIDAAKNLLLKAKVIMFQGETP--------------WETTLYCLSKLHVSLE-SRAKIIVNPSPAVY-----PLNPI 191 (379)
Q Consensus 132 ~~~~l~~~~~~l~~~~~v~~~~~~~--------------~~~~~~~~~~a~~~~~-~~~~v~~D~~~~~~-----~~~~~ 191 (379)
.++..+.+.++.+..|..+++|... .+...+-++.. ++ .++++=+....... ..+..
T Consensus 212 ~~~~~~~l~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~l---k~~~~irvHlEfas~~d~~irk~i~~~ 288 (466)
T COG4809 212 REEIREFLDEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKAL---KDRENIRVHLEFASIQDRKIRKEILTN 288 (466)
T ss_pred cHHHHHHHHHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHH---hccccceEEEEecccccHHHHHHHHHH
Confidence 4455555555667799999987321 22334444445 55 56777677664322 33445
Q ss_pred hcccCeEEEeCHHHHHHhhCCCC-----------CChhhHHHHHHHHHhc-CCCEEEEE
Q psy8082 192 VMILADIICINEQEAEIITDMKI-----------NNEEDLADCMEKLLDM-KCNTVIIT 238 (379)
Q Consensus 192 ll~~~dil~~N~~E~~~l~~~~~-----------~~~~~~~~~~~~l~~~-g~~~vivT 238 (379)
+++.++-+=+|+.|+..+...-. ++..++-+....|++. |++.+-|.
T Consensus 289 il~~v~SvGldE~ElA~vl~vlG~~eLa~~I~~~~~~~avieg~~~L~~e~~~e~i~vH 347 (466)
T COG4809 289 ILSIVYSVGLDEVELANVLNVLGYRELADRIISKDDIEAVIEGAMILLDELGLERIHVH 347 (466)
T ss_pred HHhhhhhcCCCHHHHHHHHHhhChHHHHHhhhccccHHHHHHHHHHHHHhcCccEEEEE
Confidence 78888899999999987655432 1245555665566553 67655443
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=78.44 E-value=36 Score=30.72 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHH-h---hcc-CccEEEEeC-C--CCHHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEE
Q psy8082 129 TYLSASDIDAAK-N---LLL-KAKVIMFQG-E--TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADII 199 (379)
Q Consensus 129 ~~l~~~~l~~~~-~---~l~-~~~~v~~~~-~--~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil 199 (379)
..++++++-... + .+. +...|.++| + ...+.+.++++.+ ++.|+.+.+|.+.... +.+..+++.+|.+
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~---k~~gi~~~leTnG~~~~~~~~~l~~~~D~~ 93 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRL---RLWGVSCAIETAGDAPASKLLPLAKLCDEV 93 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHH---HHcCCCEEEECCCCCCHHHHHHHHHhcCEE
Confidence 346666654321 1 121 446777765 3 3467788999999 9999999999987553 3455667766655
Q ss_pred E-----eCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCC
Q psy8082 200 C-----INEQEAEIITDMKINNEEDLADCMEKLLDMKCN 233 (379)
Q Consensus 200 ~-----~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~ 233 (379)
. ++.+..+.++|.. .+.+.+.++.+.+.|..
T Consensus 94 l~DiK~~d~~~~~~~tG~~---~~~il~nl~~l~~~g~~ 129 (213)
T PRK10076 94 LFDLKIMDATQARDVVKMN---LPRVLENLRLLVSEGVN 129 (213)
T ss_pred EEeeccCCHHHHHHHHCCC---HHHHHHHHHHHHhCCCc
Confidence 4 4677777888863 24566667777766554
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=74.44 E-value=18 Score=32.69 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=35.7
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCC
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAV 185 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~ 185 (379)
-.++|++.+.+-.+.+++..+++.+ ++.|+.+.+|.-...
T Consensus 78 ~aGAd~~tV~g~A~~~TI~~~i~~A---~~~~~~v~iDl~~~~ 117 (217)
T COG0269 78 EAGADWVTVLGAADDATIKKAIKVA---KEYGKEVQIDLIGVW 117 (217)
T ss_pred HcCCCEEEEEecCCHHHHHHHHHHH---HHcCCeEEEEeecCC
Confidence 4689999999999999999999999 999999999997543
No 95
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=70.62 E-value=66 Score=29.99 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHhhccCccEEEEeCCC---CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEEe----
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQGET---PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICI---- 201 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~~~---~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~---- 201 (379)
.+.++.+....-.....+.|.+++.- ..+-+.++++.+ ++.|..+.+|.+.... +....+++..|.+.+
T Consensus 68 ~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~a---ke~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~ 144 (260)
T COG1180 68 EVSPEVLVDKAFYSESGGGVTFSGGEPTLQAEFALDLLRAA---KERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKA 144 (260)
T ss_pred hcCHHHHHHHhhhcCCCCEEEEECCcchhhHHHHHHHHHHH---HHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeecc
Confidence 34455555433223378888887643 467788999999 9999999999997654 333466666666543
Q ss_pred -CHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEE
Q psy8082 202 -NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTV 235 (379)
Q Consensus 202 -N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~v 235 (379)
+++-.+.+++... +.+.+.++.+.+.|+...
T Consensus 145 ~~~~~y~~~tg~~~---~~vl~~~~~l~~~g~~ve 176 (260)
T COG1180 145 FDDELYRKLTGADN---EPVLENLELLADLGVHVE 176 (260)
T ss_pred CChHHHHHHhCCCc---HHHHHHHHHHHcCCCeEE
Confidence 3444788887643 566777777777666533
No 96
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=69.65 E-value=29 Score=31.73 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHhhccCccEEEEeCCC--CHHHHHHHHHHhhhhc-cCCcEEEEecCCCCCCCchhhcccCeEEE----eC
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSL-ESRAKIIVNPSPAVYPLNPIVMILADIIC----IN 202 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~~a~~~~-~~~~~v~~D~~~~~~~~~~~ll~~~dil~----~N 202 (379)
....+..+... ..+.|.+.++|+. ..+.+.++++.+ + ..+.|+++-|+... .+.+++|.++ +|
T Consensus 28 ~~~~ei~~~~~--~~GTDaImIGGS~gvt~~~~~~~v~~i---k~~~~lPvilfP~~~~-----~is~~aDavff~svLN 97 (240)
T COG1646 28 EEADEIAEAAA--EAGTDAIMIGGSDGVTEENVDNVVEAI---KERTDLPVILFPGSPS-----GISPYADAVFFPSVLN 97 (240)
T ss_pred cccHHHHHHHH--HcCCCEEEECCcccccHHHHHHHHHHH---HhhcCCCEEEecCChh-----ccCccCCeEEEEEEec
Confidence 34444444433 5689999998865 446678888888 7 78999999998643 4455666554 34
Q ss_pred HHHHHHhhC
Q psy8082 203 EQEAEIITD 211 (379)
Q Consensus 203 ~~E~~~l~~ 211 (379)
-.....+.|
T Consensus 98 S~n~~~i~g 106 (240)
T COG1646 98 SDNPYWIVG 106 (240)
T ss_pred CCCcccccc
Confidence 444444444
No 97
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=63.56 E-value=50 Score=30.29 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=50.9
Q ss_pred CcCCCCCHHHHHHHHhhccCccEEEEeCCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE---
Q psy8082 126 GANTYLSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC--- 200 (379)
Q Consensus 126 ~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~--- 200 (379)
.++...+.+.++... .+..|.++++|+. ..+.+.++++.+ ++..+|+++-|+... .+-+++|.+.
T Consensus 15 DP~k~~~~~~~~~~~--~~gtdai~vGGS~~vt~~~~~~~v~~i---k~~~lPvilfp~~~~-----~i~~~aDa~l~~s 84 (232)
T PRK04169 15 DPDKPLPDEALEAIC--ESGTDAIIVGGSDGVTEENVDELVKAI---KEYDLPVILFPGNIE-----GISPGADAYLFPS 84 (232)
T ss_pred CCCCCCCHHHHHHHH--hcCCCEEEEcCCCccchHHHHHHHHHH---hcCCCCEEEeCCCcc-----ccCcCCCEEEEEE
Confidence 345555555554433 5789999998865 456788888888 778899999887543 4556677554
Q ss_pred -eCHHHHHHhhC
Q psy8082 201 -INEQEAEIITD 211 (379)
Q Consensus 201 -~N~~E~~~l~~ 211 (379)
+|-+....+.|
T Consensus 85 vlNs~~~~~iig 96 (232)
T PRK04169 85 VLNSRNPYWIIG 96 (232)
T ss_pred EecCCCcchHhh
Confidence 44455555544
No 98
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=59.77 E-value=48 Score=28.97 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=53.6
Q ss_pred CccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCC---CCchhhcccCeEEEeCHHHHHH---hhCCCCCCh
Q psy8082 145 KAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVY---PLNPIVMILADIICINEQEAEI---ITDMKINNE 217 (379)
Q Consensus 145 ~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~---~~~~~ll~~~dil~~N~~E~~~---l~~~~~~~~ 217 (379)
.++++-.+|.. +.+++..+-+.. ++.++.++.||..... ..+.+.+|.+-..++...++.. -.|.+..++
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~---~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As~ 98 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQ---KKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEASV 98 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHh---hcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCCH
Confidence 47888888764 666666666666 8889999999986543 3444556778888888888752 234444455
Q ss_pred hhHHHHHHHH
Q psy8082 218 EDLADCMEKL 227 (379)
Q Consensus 218 ~~~~~~~~~l 227 (379)
+++.++...+
T Consensus 99 e~I~~AL~~~ 108 (174)
T TIGR00334 99 EAIIAALENV 108 (174)
T ss_pred HHHHHHHHHh
Confidence 6666665443
No 99
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=59.40 E-value=1.5e+02 Score=29.84 Aligned_cols=69 Identities=20% Similarity=0.029 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCCCHH----HHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHH
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGETPWE----TTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQ 204 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~~~~----~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~ 204 (379)
++++.++... -.+.++|++.....+- -+.++.+.| +++|+++++|-.....-....+-..|||+.-+..
T Consensus 135 ~d~~~l~~~I--~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA---~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~T 207 (432)
T PRK06702 135 LTADEIVALA--NDKTKLVYAESLGNPAMNVLNFKEFSDAA---KELEVPFIVDNTLATPYLCQAFEHGANIIVHSTT 207 (432)
T ss_pred CCHHHHHHhC--CcCCeEEEEEcCCCccccccCHHHHHHHH---HHcCCEEEEECCCCchhhCChhhcCCCEEEEccc
Confidence 4455555432 2456777775432222 367788888 9999999999974322122233345887776544
No 100
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=55.68 E-value=1.4e+02 Score=27.00 Aligned_cols=34 Identities=6% Similarity=0.099 Sum_probs=23.5
Q ss_pred hccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEE
Q psy8082 142 LLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (379)
Q Consensus 142 ~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (379)
.++++|+|+.+... .+....+.+.+ .+++++++.
T Consensus 108 ~~~~~DvVi~~~d~-~~~r~~l~~~~---~~~~ip~i~ 141 (228)
T cd00757 108 LIAGYDLVLDCTDN-FATRYLINDAC---VKLGKPLVS 141 (228)
T ss_pred HHhCCCEEEEcCCC-HHHHHHHHHHH---HHcCCCEEE
Confidence 37789998887653 35555667777 777877654
No 101
>COG1159 Era GTPase [General function prediction only]
Probab=53.85 E-value=96 Score=29.52 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCCeeEEEEecCChhHHH-HHHHHhhhcCCcccceeeeCCcCcee-EEEEEcCCCceeEEecCCcCCCC-----CHHHHH
Q psy8082 65 RASVALISKLGNDKFGKS-YLEELRKYNSINTKYIWLLQDVTTGV-CSKVISNKGTHQTNIIPGANTYL-----SASDID 137 (379)
Q Consensus 65 G~~v~lvs~vG~D~~g~~-i~~~l~~~~gi~~~~i~~~~~~~T~~-~~~~~~~~g~~~~~~~~~~~~~l-----~~~~l~ 137 (379)
+.++.|++-+|.-..|+. +.+.|-. ..+.. + .+...|++ .+.-+..+++.++++.+.+...- ..-...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G-~KisI--v--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~ 77 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVG-QKISI--V--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNK 77 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhc-CceEe--e--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHH
Confidence 457889999999988886 7777766 45532 2 22233333 22223333466666665554333 333334
Q ss_pred HHHhhccCccEEEE--eCCC-CHHHHHHHHHHhhhhccCCcEEE
Q psy8082 138 AAKNLLLKAKVIMF--QGET-PWETTLYCLSKLHVSLESRAKII 178 (379)
Q Consensus 138 ~~~~~l~~~~~v~~--~~~~-~~~~~~~~~~~a~~~~~~~~~v~ 178 (379)
.....++.+|++++ +... .......+++.. ++.+.+++
T Consensus 78 ~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~l---k~~~~pvi 118 (298)
T COG1159 78 AARSALKDVDLILFVVDADEGWGPGDEFILEQL---KKTKTPVI 118 (298)
T ss_pred HHHHHhccCcEEEEEEeccccCCccHHHHHHHH---hhcCCCeE
Confidence 44566899998876 3322 223344555555 55334444
No 102
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.17 E-value=2.3e+02 Score=28.46 Aligned_cols=56 Identities=9% Similarity=-0.070 Sum_probs=35.3
Q ss_pred cCccEEEEeCCCCH----HHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeC
Q psy8082 144 LKAKVIMFQGETPW----ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICIN 202 (379)
Q Consensus 144 ~~~~~v~~~~~~~~----~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N 202 (379)
.+.++|++.....+ .-+.++.+.+ +++|+++++|...........+--.+|++..+
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la---~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S 207 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIA---HEAGVPLLVDSTFTTPYLLRPFEHGADLVYHS 207 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHH---HHcCCEEEEECCCcccccCCchhcCCCEEEec
Confidence 45778877532211 2367778888 89999999998754321222232358888877
No 103
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=44.75 E-value=99 Score=28.20 Aligned_cols=71 Identities=23% Similarity=0.176 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE----eCHH
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC----INEQ 204 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~----~N~~ 204 (379)
...+.++.+. -.+.|.++++|.. ..+.+.++++.+ ++..+|+++-|+... .+.+++|.+. +|-.
T Consensus 15 ~~~~~~~~~~--~~gtdai~vGGS~~vt~~~~~~~v~~i---k~~~lPvilfp~~~~-----~i~~~aDa~l~~svlNs~ 84 (223)
T TIGR01768 15 EADEIAKAAA--ESGTDAILIGGSQGVTYEKTDTLIEAL---RRYGLPIILFPSNPT-----NVSRDADALFFPSVLNSD 84 (223)
T ss_pred ccHHHHHHHH--hcCCCEEEEcCCCcccHHHHHHHHHHH---hccCCCEEEeCCCcc-----ccCcCCCEEEEEEeecCC
Confidence 4445555433 4568999998865 457788888888 888899999997542 5556677554 3444
Q ss_pred HHHHhhC
Q psy8082 205 EAEIITD 211 (379)
Q Consensus 205 E~~~l~~ 211 (379)
.-..+.|
T Consensus 85 ~~~~iig 91 (223)
T TIGR01768 85 DPYWIIG 91 (223)
T ss_pred CchHHHh
Confidence 4444444
No 104
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.83 E-value=2.3e+02 Score=26.22 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHhhccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHH
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~ 208 (379)
.++.+.++...+.|.+++-|++-|.. .......+.... ...|..+...............+..-|++.+= .
T Consensus 112 ~~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~i-----S 183 (278)
T PRK11557 112 VNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKL---MKIGINAVAERDMHALLATVQALSPDDLLLAI-----S 183 (278)
T ss_pred hcCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHH---hhCCCeEEEcCChHHHHHHHHhCCCCCEEEEE-----c
Confidence 45667777776778888877775543 333444555555 55676665422111000001122333333320 1
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy8082 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (379)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~ 246 (379)
..|. ..++.++++...++|++.+.+|.....-+.
T Consensus 184 ~sg~----~~~~~~~~~~ak~~ga~iI~IT~~~~s~la 217 (278)
T PRK11557 184 YSGE----RRELNLAADEALRVGAKVLAITGFTPNALQ 217 (278)
T ss_pred CCCC----CHHHHHHHHHHHHcCCCEEEEcCCCCCchH
Confidence 1222 146778888888999999999987655443
No 105
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=43.27 E-value=35 Score=22.87 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.6
Q ss_pred EeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEE
Q psy8082 200 CINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236 (379)
Q Consensus 200 ~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vi 236 (379)
+++.+|+..|+|.. -....+++|.+.|...++
T Consensus 2 fLT~~El~elTG~k-----~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYK-----RPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCC-----CHHHHHHHHHHCCCeeEE
Confidence 46889999999984 556667888888876544
No 106
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=41.09 E-value=1.2e+02 Score=25.69 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHhhc-cCccEEEE-eCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHH
Q psy8082 129 TYLSASDIDAAKNLL-LKAKVIMF-QGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEA 206 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l-~~~~~v~~-~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~ 206 (379)
..++.+++.+....+ ...+.|.+ +|+...+.+.++++.+ ++.|.++.++.+...++..+++++..|+++...-+.
T Consensus 44 ~~lt~eel~~~I~~~~~~~~gVt~SGGEl~~~~l~~ll~~l---k~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 44 TKLTPEYLTKTLDKYRSLISCVLFLGGEWNREALLSLLKIF---KEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred cCCCHHHHHHHHHHhCCCCCEEEEechhcCHHHHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHhCCEEEEChHHH
Confidence 346666655432222 22345555 5675556788899998 888999999887544445567888899998876543
No 107
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=39.12 E-value=3.5e+02 Score=27.22 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=33.7
Q ss_pred CccEEEEeCCCC----HHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCH
Q psy8082 145 KAKVIMFQGETP----WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINE 203 (379)
Q Consensus 145 ~~~~v~~~~~~~----~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~ 203 (379)
+.++|++..... ..-+.++.+.| +++|+++++|...........+--.+|++..+.
T Consensus 155 ~tk~V~~e~~~Np~~~v~di~~I~~la---~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~ 214 (437)
T PRK05613 155 NTKAFFGETFANPQADVLDIPAVAEVA---HRNQVPLIVDNTIATAALVRPLELGADVVVASL 214 (437)
T ss_pred cCeEEEEECCCCCCCcccCHHHHHHHH---HHcCCeEEEECCCccccccChHHhCCCEEEeec
Confidence 456677643221 13366777888 889999999998432212222223577777765
No 108
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=38.89 E-value=2.6e+02 Score=24.14 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHhhc-cCccEEEEeC-CC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcc--cCeEEEe--
Q psy8082 130 YLSASDIDAAKNLL-LKAKVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI--LADIICI-- 201 (379)
Q Consensus 130 ~l~~~~l~~~~~~l-~~~~~v~~~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~--~~dil~~-- 201 (379)
.++.+++....... ...+.+.++| +. .++ +.++++.+ ++.+..+.+..+....+.+..+++ ..|.+.+
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~-l~~li~~~---~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl 121 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAG-LPDFLRKV---RELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDV 121 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHh-HHHHHHHH---HHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEec
Confidence 35566554432222 1234556654 43 234 67888888 788888888887654433444443 2455544
Q ss_pred --CHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEE
Q psy8082 202 --NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238 (379)
Q Consensus 202 --N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT 238 (379)
..++...+++......+...+.++.+.+.|.+..+.|
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 122 KAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred cCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEE
Confidence 3445666776542222367788888888887754443
No 109
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.69 E-value=71 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=31.7
Q ss_pred hccCccEEEE-eCCCCHHHHHHHHHHhhhhccCCcEEEEecCC
Q psy8082 142 LLLKAKVIMF-QGETPWETTLYCLSKLHVSLESRAKIIVNPSP 183 (379)
Q Consensus 142 ~l~~~~~v~~-~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~ 183 (379)
.++++|+|++ ....+......+-+.| ++.++|+++--+.
T Consensus 45 ~i~~aD~VIv~t~~vsH~~~~~vk~~a---kk~~ip~~~~~~~ 84 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVSHNAMWKVKKAA---KKYGIPIIYSRSR 84 (97)
T ss_pred hcCCCCEEEEEeCCcChHHHHHHHHHH---HHcCCcEEEECCC
Confidence 3889998876 4567888899999999 9999998876643
No 110
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=37.38 E-value=1e+02 Score=27.64 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred cCccEEEEeCCC--CHHHHHHHHHHhhhhcc-CCcEEEEecCCCCCCCchhhcccCeEEE----eCHHHHHHhhC
Q psy8082 144 LKAKVIMFQGET--PWETTLYCLSKLHVSLE-SRAKIIVNPSPAVYPLNPIVMILADIIC----INEQEAEIITD 211 (379)
Q Consensus 144 ~~~~~v~~~~~~--~~~~~~~~~~~a~~~~~-~~~~v~~D~~~~~~~~~~~ll~~~dil~----~N~~E~~~l~~ 211 (379)
.++|.+.++|+. ..+.+.++++.+ |+ ..+|+++-|+... .+.+.+|.+. +|-..-..+.|
T Consensus 23 ~gtDaI~VGGS~gvt~~~~~~~v~~i---k~~~~lPvilfp~~~~-----~i~~~aD~~~~~sllns~~~~~i~g 89 (205)
T TIGR01769 23 AGTDAIMVGGSLGIVESNLDQTVKKI---KKITNLPVILFPGNVN-----GLSRYADAVFFMSLLNSADTYFIVG 89 (205)
T ss_pred cCCCEEEEcCcCCCCHHHHHHHHHHH---HhhcCCCEEEECCCcc-----ccCcCCCEEEEEEeecCCCcchhhh
Confidence 347999998764 667788888888 77 5799999887543 4556666554 34444444444
No 111
>PHA00438 hypothetical protein
Probab=35.41 E-value=29 Score=25.82 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=16.4
Q ss_pred ccCCChhHHHHHHHHHHHHh
Q psy8082 266 IESEGVGDCFVGALAYYFKA 285 (379)
Q Consensus 266 vDttGAGDaF~ag~~~~l~~ 285 (379)
.--.|..++|++||++|+-.
T Consensus 44 lR~~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 44 LRQAGYSEAFIAGFLAGLQY 63 (81)
T ss_pred HHHcCCcHHHHHHHHHHHHH
Confidence 34479999999999999844
No 112
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.14 E-value=2.4e+02 Score=22.37 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEcc
Q psy8082 218 EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITV 259 (379)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~ 259 (379)
.+..++++.+.++|++.+.+|....+-+.-..+ ....++.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad--~~l~~~~ 100 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD--VVLDLPV 100 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC--EEEECCC
Confidence 577888889999999999999977665554333 3444444
No 113
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.42 E-value=55 Score=34.42 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|++|.-+|+.+++.|.+|.++.+
T Consensus 12 G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 12 GLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred hHHHHHHHHHHHHcCCcEEEEEc
Confidence 67788888888888999888873
No 114
>PRK13018 cell division protein FtsZ; Provisional
Probab=32.46 E-value=2.2e+02 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=23.2
Q ss_pred EecCChHHHHHHHHHHCCCC-eeEEEEecCCh
Q psy8082 48 QRFSGKGANQCVAAAKLRAS-VALISKLGNDK 78 (379)
Q Consensus 48 ~~~GG~a~nvA~~l~~LG~~-v~lvs~vG~D~ 78 (379)
.-+||+|.|+.-.+.+.|.. +.|+. +..|.
T Consensus 34 iGvGGaG~N~v~~m~~~~~~~v~~ia-iNTD~ 64 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIEGAETIA-INTDA 64 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCCCceEEE-EECCH
Confidence 45799999999999998854 55554 67774
No 115
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=32.12 E-value=3.5e+02 Score=24.76 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=27.4
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEE
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (379)
++++.++. .++++|+++...+. .++...+.+.+ .++++|++.
T Consensus 111 i~~~~~~~---~~~~~DiVi~~~D~-~~~r~~ln~~~---~~~~ip~v~ 152 (245)
T PRK05690 111 LDDDELAA---LIAGHDLVLDCTDN-VATRNQLNRAC---FAAKKPLVS 152 (245)
T ss_pred CCHHHHHH---HHhcCCEEEecCCC-HHHHHHHHHHH---HHhCCEEEE
Confidence 44444443 37899988877653 35555566777 788888765
No 116
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=31.87 E-value=3.7e+02 Score=25.21 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=43.7
Q ss_pred cCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCC--------HH----HHHHHHHHhhhhc
Q psy8082 104 VTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETP--------WE----TTLYCLSKLHVSL 171 (379)
Q Consensus 104 ~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~--------~~----~~~~~~~~a~~~~ 171 (379)
..++..+.+.-.||+.++.........+..+.++.+. =+..++++++|... +. .+..+-+.+ .
T Consensus 162 skLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~--e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii---~ 236 (304)
T COG2248 162 SKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFIL--EKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII---E 236 (304)
T ss_pred cccceEEEEEEecCCeEEEEcccccCCCccHHHHHHH--hcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH---H
Confidence 3455555555567777776554444456666666543 34788999887543 12 223333444 5
Q ss_pred cCCcEEEEecC
Q psy8082 172 ESRAKIIVNPS 182 (379)
Q Consensus 172 ~~~~~v~~D~~ 182 (379)
..+..+++|-.
T Consensus 237 ~~~~~lViDHH 247 (304)
T COG2248 237 ETNATLVIDHH 247 (304)
T ss_pred hCcceEEEeeh
Confidence 55688899986
No 117
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=31.19 E-value=1.8e+02 Score=27.23 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHhhccCccEE-EEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE-eCHHH
Q psy8082 128 NTYLSASDIDAAKNLLLKAKVI-MFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC-INEQE 205 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~l~~~~~v-~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~-~N~~E 205 (379)
...+.++.+++..+.|.+++-+ +++...+..+...+.... ..-|.++..-.....-......+..-|+++ ++
T Consensus 112 ~~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l---~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS--- 185 (281)
T COG1737 112 LNLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKL---MRIGLNVVALSDTHGQLMQLALLTPGDVVIAIS--- 185 (281)
T ss_pred HHhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHH---HHcCCceeEecchHHHHHHHHhCCCCCEEEEEe---
Confidence 4567888888888888899844 444434445555666666 566666554333211001122333344433 22
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC
Q psy8082 206 AEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS 242 (379)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~ 242 (379)
+.|. ..++.+.++...++|++.|.+|.-..
T Consensus 186 ---~sG~----t~e~i~~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 186 ---FSGY----TREIVEAAELAKERGAKVIAITDSAD 215 (281)
T ss_pred ---CCCC----cHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 1222 25778888889999999999998543
No 118
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=30.93 E-value=38 Score=25.17 Aligned_cols=20 Identities=5% Similarity=0.208 Sum_probs=16.9
Q ss_pred ccCCChhHHHHHHHHHHHHh
Q psy8082 266 IESEGVGDCFVGALAYYFKA 285 (379)
Q Consensus 266 vDttGAGDaF~ag~~~~l~~ 285 (379)
....|+.++|++||+.|+..
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHccccHHHHHHHHHHHHH
Confidence 34569999999999999865
No 119
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.83 E-value=3.7e+02 Score=23.52 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=62.7
Q ss_pred cCChhHHHHHHHHhhhcCCcccceeee----CCcCceeEEEEEcCCCceeEEecCCcC------CCCCHHHHH-----HH
Q psy8082 75 GNDKFGKSYLEELRKYNSINTKYIWLL----QDVTTGVCSKVISNKGTHQTNIIPGAN------TYLSASDID-----AA 139 (379)
Q Consensus 75 G~D~~g~~i~~~l~~~~gi~~~~i~~~----~~~~T~~~~~~~~~~g~~~~~~~~~~~------~~l~~~~l~-----~~ 139 (379)
|+-..-..+.+.|++ .|..+.++... .+.++++.++-++ .|++..+.+.+.. .....+.++ .+
T Consensus 17 GKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al 94 (179)
T COG1618 17 GKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPAL 94 (179)
T ss_pred cHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHH
Confidence 344445567777777 76666555432 2334444443333 3666665544321 112333333 22
Q ss_pred HhhccCccEEEEeCCCC----HHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEE
Q psy8082 140 KNLLLKAKVIMFQGETP----WETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIIC 200 (379)
Q Consensus 140 ~~~l~~~~~v~~~~~~~----~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~ 200 (379)
..+++.+|++.++--.+ .....++++.+ .+.+.++++-..-..+ +.++.+-+.-.++.
T Consensus 95 ~rA~~~aDvIIIDEIGpMElks~~f~~~ve~v---l~~~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 95 RRALEEADVIIIDEIGPMELKSKKFREAVEEV---LKSGKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred HHHhhcCCEEEEecccchhhccHHHHHHHHHH---hcCCCcEEEEEecccCChHHHHhhhcCCEEE
Confidence 34467789999973222 33445666666 6677777766653322 33444444433333
No 120
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=30.51 E-value=71 Score=33.44 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHCCCCeeEEEEec
Q psy8082 51 SGKGANQCVAAAKLRASVALISKLG 75 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~vG 75 (379)
||+|..+|+.++..|.+|.++++.-
T Consensus 15 G~AGl~AAi~aa~~g~~V~l~~K~~ 39 (562)
T COG1053 15 GGAGLRAAIEAAEAGLKVALLSKAP 39 (562)
T ss_pred cHHHHHHHHHHHhcCCcEEEEEccc
Confidence 8899999999999999999998753
No 121
>PRK06197 short chain dehydrogenase; Provisional
Probab=30.48 E-value=1.5e+02 Score=27.68 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHCCCCeeEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALIS 72 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs 72 (379)
||-|..+|..+++.|.++.+++
T Consensus 26 ~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 26 TGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred CcHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999999876654
No 122
>PRK08401 L-aspartate oxidase; Provisional
Probab=29.95 E-value=61 Score=32.86 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|++|..+|+.++..|.+|.++.+
T Consensus 10 G~AGl~AAi~aae~G~~V~liek 32 (466)
T PRK08401 10 GLAGLTAAISLAKKGFDVTIIGP 32 (466)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeC
Confidence 67788888888888888888776
No 123
>PRK15482 transcriptional regulator MurR; Provisional
Probab=29.71 E-value=2.4e+02 Score=26.26 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHH
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE 207 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~ 207 (379)
..++.+.++...+.+.+++-+++-|.. +......+.... ...|..+.+.............+..-|++.+
T Consensus 118 ~~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~------ 188 (285)
T PRK15482 118 ALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKL---MKIGYRVACEADTHVQATVSQALKKGDVQIA------ 188 (285)
T ss_pred HhcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHH---HhCCCeeEEeccHhHHHHHHhcCCCCCEEEE------
Confidence 346677777777778888877775543 333344444444 5556665543221110001112222233331
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy8082 208 IITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (379)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~ 246 (379)
......+ .++.++++...++|++.+.+|.....-+.
T Consensus 189 --iS~sg~t-~~~~~~~~~a~~~g~~iI~IT~~~~s~la 224 (285)
T PRK15482 189 --ISYSGSK-KEIVLCAEAARKQGATVIAITSLADSPLR 224 (285)
T ss_pred --EeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchH
Confidence 1111112 46778888889999999999986655443
No 124
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.61 E-value=2.5e+02 Score=25.55 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=41.0
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCCCH-HHHHHHHHHhhhhccC--CcEEEEecCCCCCCCchhhcccCeEEE----eCH
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGETPW-ETTLYCLSKLHVSLES--RAKIIVNPSPAVYPLNPIVMILADIIC----INE 203 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~~~-~~~~~~~~~a~~~~~~--~~~v~~D~~~~~~~~~~~ll~~~dil~----~N~ 203 (379)
.+.+.+..... .+..|.++++|.... ++..+.++.+ ++. ..|+++-|+... .+.+.+|.+. +|-
T Consensus 12 ~~~~~~~~~~~-~~gtdai~vGGS~~v~~~~~~~~~~i---k~~~~~~Pvilfp~~~~-----~i~~~aDa~l~~svlns 82 (219)
T cd02812 12 LVDEEIAKLAE-ESGTDAIMVGGSDGVSSTLDNVVRLI---KRIRRPVPVILFPSNPE-----AVSPGADAYLFPSVLNS 82 (219)
T ss_pred CCHHHHHHHHH-hcCCCEEEECCccchhhhHHHHHHHH---HHhcCCCCEEEeCCCcc-----ccCcCCCEEEEEeeecC
Confidence 44555554331 267899999987622 3444444433 332 489999998653 4456677654 344
Q ss_pred HHHHHhhC
Q psy8082 204 QEAEIITD 211 (379)
Q Consensus 204 ~E~~~l~~ 211 (379)
.....+.|
T Consensus 83 ~n~~~i~g 90 (219)
T cd02812 83 GDPYWIIG 90 (219)
T ss_pred CCchHHHH
Confidence 44444444
No 125
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.92 E-value=1.9e+02 Score=26.93 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHH------HhhCC--C-------CCChhhHH
Q psy8082 157 WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE------IITDM--K-------INNEEDLA 221 (379)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~------~l~~~--~-------~~~~~~~~ 221 (379)
.+-+..+.+.+ ++.|.+++-++.+.. ..+.+.+.+|++++-..+.+ .+.+. . ..+.+++.
T Consensus 65 ~~gl~~L~~~~---~~~Gl~~~Tev~d~~--~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~ 139 (250)
T PRK13397 65 LQGIRYLHEVC---QEFGLLSVSEIMSER--QLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYL 139 (250)
T ss_pred HHHHHHHHHHH---HHcCCCEEEeeCCHH--HHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHH
Confidence 35566666777 888999888876543 23455567888886544433 22221 1 23668899
Q ss_pred HHHHHHHhcCCCEEEEEe-cCCc
Q psy8082 222 DCMEKLLDMKCNTVIITL-GGSG 243 (379)
Q Consensus 222 ~~~~~l~~~g~~~vivT~-G~~G 243 (379)
.+++++.+.|.+.++++. |..+
T Consensus 140 ~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 140 GALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred HHHHHHHHcCCCeEEEEccccCC
Confidence 999999998887666664 6544
No 126
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=28.54 E-value=5.6e+02 Score=24.93 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccC
Q psy8082 66 ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (379)
Q Consensus 66 ~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~ 145 (379)
.++.++|.-|. -|+.+.+.|++ .......+.... ....-|+...-+. +-......+-.+. ..+++
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e-~~f~~~~~~~~A---------S~rSaG~~~~~f~-~~~~~v~~~~~~~--~~~~~ 66 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEE-RHFPFEELVLLA---------SARSAGKKYIEFG-GKSIGVPEDAADE--FVFSD 66 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHh-cCCCcceEEEEe---------cccccCCcccccc-CccccCccccccc--ccccc
Confidence 46778888776 89999999998 555444222211 1112233311111 1101111100111 12678
Q ss_pred ccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE--eCHHHHHHhhCCC-C---C--Ch
Q psy8082 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC--INEQEAEIITDMK-I---N--NE 217 (379)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~--~N~~E~~~l~~~~-~---~--~~ 217 (379)
.|+++++.. .+...++...+ .++|+. ++|-...++ ..+.+-++. +|.+.+....... + . +.
T Consensus 67 ~Divf~~ag--~~~s~~~~p~~---~~~G~~-VIdnsSa~R-----m~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst 135 (334)
T COG0136 67 VDIVFFAAG--GSVSKEVEPKA---AEAGCV-VIDNSSAFR-----MDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCST 135 (334)
T ss_pred CCEEEEeCc--hHHHHHHHHHH---HHcCCE-EEeCCcccc-----cCCCCCEecCCcCHHHHHhhhhCCCEEECCChHH
Confidence 999998753 34557788888 888865 455554432 122222333 3444333322110 0 0 11
Q ss_pred hhHHHHHHHHHh-cCCCEEEEEe
Q psy8082 218 EDLADCMEKLLD-MKCNTVIITL 239 (379)
Q Consensus 218 ~~~~~~~~~l~~-~g~~~vivT~ 239 (379)
..+.-+.+-|++ .+++.+.||.
T Consensus 136 ~~l~~aL~PL~~~~~i~~v~VsT 158 (334)
T COG0136 136 IQLVLALKPLHDAFGIKRVVVST 158 (334)
T ss_pred HHHHHHHHHHHhhcCceEEEEEE
Confidence 234455566776 6888888884
No 127
>KOG4184|consensus
Probab=27.72 E-value=54 Score=31.92 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=39.4
Q ss_pred cCccEEEEeCCCCHHH---------HHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHh
Q psy8082 144 LKAKVIMFQGETPWET---------TLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEII 209 (379)
Q Consensus 144 ~~~~~v~~~~~~~~~~---------~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l 209 (379)
=+.|+++++|--..|. +.++.+.+ -....|+++=++...... ..+..++|++|-+=+|++|+.+|
T Consensus 237 fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L-~~iP~gip~HlElaS~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL 315 (478)
T KOG4184|consen 237 FQPDLVVVSGLHMMEMQSKEEREARLQQVVRSL-SDIPTGIPVHLELASMTNRELMSSIVHQVLPYVDSLGLNEQELLFL 315 (478)
T ss_pred hCCCEEEEechhHHhhhhHHHHHHHHHHHHHHH-hcCCCCCchhhhHhHHHHHHHHHHHHHHhhhhccccCCCHHHHHHH
Confidence 3578999987432221 12222211 001135555555543322 34457899999999999999998
Q ss_pred hCC
Q psy8082 210 TDM 212 (379)
Q Consensus 210 ~~~ 212 (379)
...
T Consensus 316 ~q~ 318 (478)
T KOG4184|consen 316 TQS 318 (478)
T ss_pred HHH
Confidence 654
No 128
>PRK05968 hypothetical protein; Provisional
Probab=27.69 E-value=5.9e+02 Score=24.97 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=28.4
Q ss_pred ccCccEEEEeCC----CCHHHHHHHHHHhhhhccCCcEEEEecCC
Q psy8082 143 LLKAKVIMFQGE----TPWETTLYCLSKLHVSLESRAKIIVNPSP 183 (379)
Q Consensus 143 l~~~~~v~~~~~----~~~~~~~~~~~~a~~~~~~~~~v~~D~~~ 183 (379)
+.+.++|++... ....-+.++.+.+ +++++++++|-..
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la---~~~gi~vivD~a~ 186 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALA---KRHGVVTMIDNSW 186 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHH---HHcCCEEEEECCC
Confidence 566788887642 2346677888888 8999999999864
No 129
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=27.59 E-value=3.5e+02 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=22.4
Q ss_pred EecCChHHHHHHHHHHCCCCeeEEEEecCCh
Q psy8082 48 QRFSGKGANQCVAAAKLRASVALISKLGNDK 78 (379)
Q Consensus 48 ~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~ 78 (379)
.-.||+|.|+.-.+.+.+..-.-+-.+-.|.
T Consensus 23 iGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 23 IGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred EEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 4579999999999999985433333466664
No 130
>PRK07050 cystathionine beta-lyase; Provisional
Probab=27.07 E-value=6.2e+02 Score=24.95 Aligned_cols=38 Identities=3% Similarity=-0.035 Sum_probs=28.0
Q ss_pred cCccEEEEeCCC----CHHHHHHHHHHhhhhccCCcEEEEecCCC
Q psy8082 144 LKAKVIMFQGET----PWETTLYCLSKLHVSLESRAKIIVNPSPA 184 (379)
Q Consensus 144 ~~~~~v~~~~~~----~~~~~~~~~~~a~~~~~~~~~v~~D~~~~ 184 (379)
.+.++|+++... ....+.++.+.+ +++++.+++|-...
T Consensus 149 ~~tklV~le~p~Np~~~~~di~~I~~ia---~~~gi~livD~a~a 190 (394)
T PRK07050 149 PNTRLIWLEAPGSVTMEVPDVPAITAAA---RARGVVTAIDNTYS 190 (394)
T ss_pred CCCeEEEEECCCCCCccHhhHHHHHHHH---HHcCCEEEEECCcc
Confidence 456788875422 456677888888 89999999998743
No 131
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.60 E-value=6.4e+02 Score=25.02 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHCC-CCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCC
Q psy8082 51 SGKGANQCVAAAKLR-ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANT 129 (379)
Q Consensus 51 GG~a~nvA~~l~~LG-~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~ 129 (379)
.|.+.==|...+-+. .+-.++..-|. ||+.+.+.+++ +|.++..+... ...
T Consensus 64 sGt~amEAav~sl~~pgdkVLv~~nG~--FG~R~~~ia~~-~g~~v~~~~~~-------------------------wg~ 115 (383)
T COG0075 64 SGTLAMEAAVASLVEPGDKVLVVVNGK--FGERFAEIAER-YGAEVVVLEVE-------------------------WGE 115 (383)
T ss_pred CcHHHHHHHHHhccCCCCeEEEEeCCh--HHHHHHHHHHH-hCCceEEEeCC-------------------------CCC
Confidence 344433333333332 23444445564 99999999999 88876543211 124
Q ss_pred CCCHHHHHHHHhhccCccEEEE-eCCCCH---HHHHHHHHHhhhhccCCcEEEEecCCCC---------C---------C
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMF-QGETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAV---------Y---------P 187 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~-~~~~~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~---------~---------~ 187 (379)
.++++++++..+.-...+.|.+ .++.+. .-+.++.+.+ ++++..+++|.-... | +
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~---k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQ 192 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAA---KEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQ 192 (383)
T ss_pred CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHH---HHcCCEEEEEecccCCCcccchhhcCccEEEecCc
Confidence 5778888765432234544433 233322 2356777777 999999999985321 1 1
Q ss_pred CchhhcccCeEEEeCHHHHHHhhCC
Q psy8082 188 LNPIVMILADIICINEQEAEIITDM 212 (379)
Q Consensus 188 ~~~~ll~~~dil~~N~~E~~~l~~~ 212 (379)
.--..-|..-++.+|++..+.+.+.
T Consensus 193 K~l~~PPGla~v~~S~~a~e~~~~~ 217 (383)
T COG0075 193 KALGAPPGLAFVAVSERALEAIEER 217 (383)
T ss_pred hhccCCCccceeEECHHHHHHHhcC
Confidence 1112334566777777777776554
No 132
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=26.26 E-value=82 Score=33.35 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|++|..+|+.++..|.+|.++.+
T Consensus 38 G~AGl~AAi~Aa~~G~~V~lveK 60 (617)
T PTZ00139 38 GGAGLRAALGLVELGYKTACISK 60 (617)
T ss_pred cHHHHHHHHHHHHcCCcEEEEec
Confidence 66677777777777777777654
No 133
>PRK06370 mercuric reductase; Validated
Probab=26.07 E-value=89 Score=31.51 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHCCCCeeEEE
Q psy8082 53 KGANQCVAAAKLRASVALIS 72 (379)
Q Consensus 53 ~a~nvA~~l~~LG~~v~lvs 72 (379)
+|..+|..++++|.+|.++-
T Consensus 16 aG~~aA~~aa~~G~~v~lie 35 (463)
T PRK06370 16 AGPPLAARAAGLGMKVALIE 35 (463)
T ss_pred HHHHHHHHHHhCCCeEEEEe
Confidence 36677777788888877774
No 134
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.82 E-value=5.9e+02 Score=24.94 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHH------hh--CCC-------CCChhhHHH
Q psy8082 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI------IT--DMK-------INNEEDLAD 222 (379)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~------l~--~~~-------~~~~~~~~~ 222 (379)
+.+..+.+.+ .+.|.+++-++.... ..+.+.+++|++++-..+.+. +. +.. ..+.+++..
T Consensus 152 ~gl~~L~~~~---~e~Gl~~~tev~d~~--~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~ 226 (352)
T PRK13396 152 SALELLAAAR---EATGLGIITEVMDAA--DLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLM 226 (352)
T ss_pred HHHHHHHHHH---HHcCCcEEEeeCCHH--HHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHH
Confidence 3344444445 778999988886543 234555668888876555432 21 111 126789999
Q ss_pred HHHHHHhcCCC-EEEEEecCC
Q psy8082 223 CMEKLLDMKCN-TVIITLGGS 242 (379)
Q Consensus 223 ~~~~l~~~g~~-~vivT~G~~ 242 (379)
+++++...|.+ .+++-+|-+
T Consensus 227 A~e~i~~~Gn~~viL~erG~r 247 (352)
T PRK13396 227 AAEYILAAGNPNVILCERGIR 247 (352)
T ss_pred HHHHHHHcCCCeEEEEecCCc
Confidence 99999988775 555556553
No 135
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=25.41 E-value=4.9e+02 Score=23.51 Aligned_cols=81 Identities=9% Similarity=0.087 Sum_probs=48.5
Q ss_pred cEEEEeC-CC--CHHHHHHHHHHhhhhccCCcEEEEecCCCC---CCCchhhcccCeEEEeC-----HHHHHHhhCCCCC
Q psy8082 147 KVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAV---YPLNPIVMILADIICIN-----EQEAEIITDMKIN 215 (379)
Q Consensus 147 ~~v~~~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~---~~~~~~ll~~~dil~~N-----~~E~~~l~~~~~~ 215 (379)
+.|.++| +. ..+.+.++++.+ ++.|..+.++.++.. .+....+++.+|.+.++ ++....+.|..
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~---k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~-- 146 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRAC---KKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVS-- 146 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHH---HHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCCC--
Confidence 3555554 43 345567888888 888998888887653 24455666677765544 33344555542
Q ss_pred ChhhHHHHHHHHHhcCCC
Q psy8082 216 NEEDLADCMEKLLDMKCN 233 (379)
Q Consensus 216 ~~~~~~~~~~~l~~~g~~ 233 (379)
.+...+..+.+.+.|.+
T Consensus 147 -~~~~l~~i~~l~~~g~~ 163 (246)
T PRK11145 147 -NHRTLEFARYLAKRNQK 163 (246)
T ss_pred -hHHHHHHHHHHHhCCCc
Confidence 13444555666665554
No 136
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.18 E-value=1.5e+02 Score=26.00 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred CeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCc
Q psy8082 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKA 146 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 146 (379)
+|.++|.......|..+.+++.. .|-++.++.-....+. +.+-.. +... -..+..+...+.+.++
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~~~~~--------p~~~~~-i~v~-----sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPSSLPP--------PPGVKV-IRVE-----SAEEMLEAVKELLPSA 83 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TTS------------TTEEE-EE-S-----SHHHHHHHHHHHGGGG
T ss_pred CceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCccccc--------cccceE-EEec-----chhhhhhhhccccCcc
Confidence 46666666666666666666666 5665554432211000 112111 1111 1223444445557888
Q ss_pred cEEEEeCCC----CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCc-hhhcccCeEEEeCHHHHHHhhCCCCCChhhHH
Q psy8082 147 KVIMFQGET----PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLN-PIVMILADIICINEQEAEIITDMKINNEEDLA 221 (379)
Q Consensus 147 ~~v~~~~~~----~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~-~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~ 221 (379)
|+++...-. +.+....-++.. ......+-+.+.+..-..+ ....+..-++-+-.+ +.+..+
T Consensus 84 Di~I~aAAVsDf~p~~~~~~KIkK~---~~~~l~l~L~~~pkIL~~l~~~~~~~~~lVGFkaE-----------t~~l~~ 149 (185)
T PF04127_consen 84 DIIIMAAAVSDFRPEEPAEGKIKKS---SGDELTLELKPTPKILAELRKNKKPNQFLVGFKAE-----------TEELIE 149 (185)
T ss_dssp SEEEE-SB--SEEESCHHSS-G------TT-CEEEEEEE-GGHGCCHHHHCSTTTEEEEEEEE-----------SCHHHH
T ss_pred eeEEEecchhheeehhccccccccc---cCcceEEEEEeChHHHHHHHhcccCCcEEEEEEec-----------CCcHHH
Confidence 998875321 111111111111 1233445566666533222 122232222222222 113456
Q ss_pred HHHHHHHhcCCCEEEEEecC
Q psy8082 222 DCMEKLLDMKCNTVIITLGG 241 (379)
Q Consensus 222 ~~~~~l~~~g~~~vivT~G~ 241 (379)
.+.++|.++++..++.-.=.
T Consensus 150 ~A~~kl~~k~~D~IVaN~~~ 169 (185)
T PF04127_consen 150 NAKEKLERKGADLIVANDLS 169 (185)
T ss_dssp HHHHHHHHCT-SEEEEEEGC
T ss_pred HHHHHhHhhCCCEEEEeCCC
Confidence 66777888999999887644
No 137
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=24.72 E-value=4.7e+02 Score=24.37 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=51.2
Q ss_pred cEEEEe-CCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEE-----eCHHHHHHhhCCCCCCh
Q psy8082 147 KVIMFQ-GET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIIC-----INEQEAEIITDMKINNE 217 (379)
Q Consensus 147 ~~v~~~-~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~-----~N~~E~~~l~~~~~~~~ 217 (379)
..|.++ |+. .++.+.++++.+ ++.|..+.++.+.... +...++++..|++. .+++....+.|.. .
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~---k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~---~ 200 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQAC---HERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGVD---N 200 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHH---HHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCCC---h
Confidence 345554 443 345567888988 8889888888886543 33455666666654 3455566666642 2
Q ss_pred hhHHHHHHHHHhcCCCE
Q psy8082 218 EDLADCMEKLLDMKCNT 234 (379)
Q Consensus 218 ~~~~~~~~~l~~~g~~~ 234 (379)
+.+.+.++.+.+.+.+.
T Consensus 201 ~~vl~~i~~l~~~~~~~ 217 (295)
T TIGR02494 201 EPILENLEALAAAGKNV 217 (295)
T ss_pred HHHHHHHHHHHhCCCcE
Confidence 45666677777766543
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.63 E-value=1.3e+02 Score=26.28 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=38.8
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEe-cCCCCCCCchhhcc-cCeEEEeC
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN-PSPAVYPLNPIVMI-LADIICIN 202 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D-~~~~~~~~~~~ll~-~~dil~~N 202 (379)
-.++|.+.+..+...+...++++.+ +++|.++.++ +++.........+. .+|++..+
T Consensus 75 ~aGad~i~~h~~~~~~~~~~~i~~~---~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 75 KAGADIVTVLGAAPLSTIKKAVKAA---KKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred hcCCCEEEEEeeCCHHHHHHHHHHH---HHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 3478999887766656778889999 8899999877 55443211222333 78887763
No 139
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=24.54 E-value=2.5e+02 Score=25.69 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~ 200 (379)
....+.++.+. -+..|.++++|+....+..+.++... +...+|+++-|+... .+.+.+|.+.
T Consensus 19 ~~~~~~~~~~~--~~gtDai~VGGS~~~~~~d~vv~~ik--~~~~lPvilfPg~~~-----~vs~~aDail 80 (230)
T PF01884_consen 19 PNPEEALEAAC--ESGTDAIIVGGSDTGVTLDNVVALIK--RVTDLPVILFPGSPS-----QVSPGADAIL 80 (230)
T ss_dssp S-HHHHHHHHH--CTT-SEEEEE-STHCHHHHHHHHHHH--HHSSS-EEEETSTCC-----G--TTSSEEE
T ss_pred CCcHHHHHHHH--hcCCCEEEECCCCCccchHHHHHHHH--hcCCCCEEEeCCChh-----hcCcCCCEEE
Confidence 33344444432 57899999999872233444444441 227899999998653 5556777554
No 140
>PRK08328 hypothetical protein; Provisional
Probab=24.21 E-value=5e+02 Score=23.52 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEE
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (379)
++++.++. .++++|+|+...+. .++-..+.+.| ++++++++.
T Consensus 107 ~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~---~~~~ip~i~ 148 (231)
T PRK08328 107 LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYA---HKKGIPLVH 148 (231)
T ss_pred CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHH---HHcCCCEEE
Confidence 45555443 37889988876554 34545555667 788888764
No 141
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=24.20 E-value=1.1e+02 Score=31.27 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.6
Q ss_pred ecCChHHHHHHHHHHCCCCeeEEEE
Q psy8082 49 RFSGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 49 ~~GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
-.|++|..+|+.++..|.+|.++-+
T Consensus 68 G~G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 68 GAGGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3466788888999999999999875
No 142
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=23.66 E-value=1.2e+02 Score=28.55 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHCCCCeeEEEEecCCh
Q psy8082 52 GKGANQCVAAAKLRASVALISKLGNDK 78 (379)
Q Consensus 52 G~a~nvA~~l~~LG~~v~lvs~vG~D~ 78 (379)
.-+.|+|.+.+.||.+-..|+.|-.|.
T Consensus 100 ~EP~rvAeaV~~mgLkyVViTsVdRDD 126 (306)
T COG0320 100 DEPERVAEAVKDMGLKYVVITSVDRDD 126 (306)
T ss_pred chHHHHHHHHHHhCCCeEEEEeecccc
Confidence 347899999999999999999999874
No 143
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=23.39 E-value=7.2e+02 Score=24.49 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=53.0
Q ss_pred CeeEEEEecCChhHHHHHHHHh-hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccC
Q psy8082 67 SVALISKLGNDKFGKSYLEELR-KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~~l~-~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~ 145 (379)
++.++|.-|- .|+.+.+.|. + ...+...+........+ |+... +.+. .+..+++... +.+++
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e-~~fp~~~~~~~ss~~s~---------g~~~~--f~~~--~~~v~~~~~~-~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEE-RDFDAIRPVFFSTSQLG---------QAAPS--FGGT--TGTLQDAFDI-DALKA 64 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhC-CCCccccEEEEEchhhC---------CCcCC--CCCC--cceEEcCccc-ccccC
Confidence 4566666664 8999999888 4 45543333222221111 11111 1111 1111112111 12678
Q ss_pred ccEEEEeCCCCHHHHHHHHHHhhhhccCCcE-EEEecCCCC
Q psy8082 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV 185 (379)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~-v~~D~~~~~ 185 (379)
.|+++++. +.+...++...+ .++|.+ +++|-+...
T Consensus 65 vDivffa~--g~~~s~~~~p~~---~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 65 LDIIITCQ--GGDYTNEIYPKL---RESGWQGYWIDAASSL 100 (366)
T ss_pred CCEEEEcC--CHHHHHHHHHHH---HhCCCCeEEEECChhh
Confidence 99999865 346778888888 888864 678887554
No 144
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=23.32 E-value=4.2e+02 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=21.7
Q ss_pred ecCChHHHHHHHHHHCCC-CeeEEEEecCCh
Q psy8082 49 RFSGKGANQCVAAAKLRA-SVALISKLGNDK 78 (379)
Q Consensus 49 ~~GG~a~nvA~~l~~LG~-~v~lvs~vG~D~ 78 (379)
-.||+|.|+.-.+.+.+. .+.++. +..|.
T Consensus 7 GvGg~G~n~v~~l~~~~~~~~~~~a-~ntD~ 36 (304)
T cd02201 7 GVGGGGGNAVNRMIESGLEGVEFIA-ANTDA 36 (304)
T ss_pred EeCCcHHHHHHHHHHcCCCCceEEE-EECCH
Confidence 469999999999999985 444443 56664
No 145
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.95 E-value=4.8e+02 Score=22.21 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeCCCC-HHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEE-EeCHHHH
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADII-CINEQEA 206 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil-~~N~~E~ 206 (379)
..++++++++..+.+.+++-+++-|... .-....+..+. ...|..+.+-.... ...+..-|++ .++.
T Consensus 13 ~~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l---~~~g~~~~~~~~~~-----~~~~~~~Dv~I~iS~--- 81 (179)
T TIGR03127 13 SRIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRL---MHLGFNVYVVGETT-----TPSIKKGDLLIAISG--- 81 (179)
T ss_pred HhCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHH---HhCCCeEEEeCCcc-----cCCCCCCCEEEEEeC---
Confidence 4567778887777788888887765433 23334444445 55566554432211 1122222222 2221
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy8082 207 EIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (379)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G 243 (379)
.|. ..++.++++...++|++.+.+|.-...
T Consensus 82 ---sG~----t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 82 ---SGE----TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred ---CCC----cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 121 256778888889999999999986544
No 146
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.94 E-value=3.2e+02 Score=25.53 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeCCCC-HHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHH
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE 207 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~ 207 (379)
..++++.+++..+.+.+++-+++-|... ......+.... ...|..+.+-............+..-|++.+
T Consensus 123 ~~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~------ 193 (292)
T PRK11337 123 SILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKF---LRIGVRCQAYDDAHIMLMSAALLQEGDVVLV------ 193 (292)
T ss_pred HhcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHH---hhCCCeEEEcCCHHHHHHHHhcCCCCCEEEE------
Confidence 4467778887777788888777755433 23334444455 4556665432211100000112222332221
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy8082 208 IITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (379)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~ 246 (379)
......+ .++.++++...++|++.+.+|....+-+.
T Consensus 194 --iS~sG~t-~~~~~~~~~ak~~g~~ii~IT~~~~s~la 229 (292)
T PRK11337 194 --VSHSGRT-SDVIEAVELAKKNGAKIICITNSYHSPIA 229 (292)
T ss_pred --EeCCCCC-HHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 1111112 45778888888999999999987655443
No 147
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=22.55 E-value=6e+02 Score=23.20 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEE
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (379)
.++.+.+.+ .++++|+++..... .++...+.+.+ .++++|++.
T Consensus 102 ~i~~~~~~~---~~~~~DlVvd~~D~-~~~r~~ln~~~---~~~~ip~v~ 144 (240)
T TIGR02355 102 KLDDAELAA---LIAEHDIVVDCTDN-VEVRNQLNRQC---FAAKVPLVS 144 (240)
T ss_pred cCCHHHHHH---HhhcCCEEEEcCCC-HHHHHHHHHHH---HHcCCCEEE
Confidence 344444443 37899988876544 45556667777 788888775
No 148
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.48 E-value=2.1e+02 Score=26.56 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHH
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEA 206 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~ 206 (379)
+.+.++.+.. -.++|++++.... +.+.+.++++.+ +..|..+++|..... +.....--.+|++-.|...+
T Consensus 121 ~~~~qi~~a~--~~GAD~VlLi~~~l~~~~l~~li~~a---~~lGl~~lvevh~~~-E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 121 IDPYQIYEAR--AAGADAILLIVAALDDEQLKELLDYA---HSLGLDVLVEVHDEE-ELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCHHHHHHHH--HcCCCEEEEEeccCCHHHHHHHHHHH---HHcCCeEEEEeCCHH-HHHHHHHcCCCEEEECCCCc
Confidence 3444555543 5699999997655 667999999999 999999999987542 12122223688988885443
No 149
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.48 E-value=2e+02 Score=22.75 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy8082 218 EDLADCMEKLLDMKCNTVIITLGGSGVV 245 (379)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vivT~G~~G~~ 245 (379)
.+..+.++.+.++|++.+++|.-....+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChh
Confidence 4567778888889999999998655433
No 150
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.35 E-value=4.5e+02 Score=28.09 Aligned_cols=82 Identities=26% Similarity=0.279 Sum_probs=43.5
Q ss_pred ccCccEEEEeCCCCHHH---HHHHHHHhhhhccC-Cc-EEEEecCCCCC----CCchhhcccCe----------EEEeCH
Q psy8082 143 LLKAKVIMFQGETPWET---TLYCLSKLHVSLES-RA-KIIVNPSPAVY----PLNPIVMILAD----------IICINE 203 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~---~~~~~~~a~~~~~~-~~-~v~~D~~~~~~----~~~~~ll~~~d----------il~~N~ 203 (379)
++++|+|++-|..+.+. ....+..+ ++. |. .|++||....- +..-.+-+..| ++.-+.
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~i~~A---k~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ytp 243 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKWILEA---KEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIRYTP 243 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHHHHHH---HHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHhCCH
Confidence 66899998876544332 22333344 443 64 46789974321 00000111111 112356
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhc
Q psy8082 204 QEAEIITDMKINNEEDLADCMEKLLDM 230 (379)
Q Consensus 204 ~E~~~l~~~~~~~~~~~~~~~~~l~~~ 230 (379)
+.++.++|.. .+++.++++.+.+.
T Consensus 244 e~v~~itGvp---~e~I~~~A~~~a~a 267 (649)
T cd02752 244 EEVEDICGVP---KEDFLKVAEMFAAT 267 (649)
T ss_pred HHHHHHHCcC---HHHHHHHHHHHHhc
Confidence 7777888863 45677777777664
No 151
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.31 E-value=1.9e+02 Score=25.34 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=39.7
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEec-CCCCC-CCchhhcc-cCeEEEeC
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNP-SPAVY-PLNPIVMI-LADIICIN 202 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~-~~~~~-~~~~~ll~-~~dil~~N 202 (379)
-.++|++.+....+.....++++.+ +++|.++..+. ++... +......+ .+|+++++
T Consensus 74 ~~Gad~i~vh~~~~~~~~~~~i~~~---~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 74 AAGADIVTVLGVADDATIKGAVKAA---KKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HcCCCEEEEeccCCHHHHHHHHHHH---HHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3478999888776666678889999 99999999884 44321 12233344 78888875
No 152
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=21.89 E-value=1.8e+02 Score=27.34 Aligned_cols=56 Identities=29% Similarity=0.515 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhc--CCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCC------ChhHHHHHHHHh
Q psy8082 272 GDCFVGALAYYFKAG--QKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSER------KSNSAFVSWFKN 337 (379)
Q Consensus 272 GDaF~ag~~~~l~~~--~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p------~~~~~~~~~~~~ 337 (379)
-|+|++..++....+ +...++++|+.. |.+.+ -++++...-...| |..+ ..+||+.
T Consensus 212 ADCfAGVW~~~~~q~~~Le~gDleeAlnA---------A~aiGDD~lQ~~~~g~vvPdsftHGTS~Q-R~~wF~r 276 (295)
T COG2321 212 ADCFAGVWANYVQQKGLLETGDLEEALNA---------AHAIGDDRLQQQSQGRVVPDSFTHGTSQQ-RVSWFKR 276 (295)
T ss_pred hhHHHHHHHHHhcCCCCCccchHHHHHHH---------HHHhcccHHHHhccCCcCCcccccCCHHH-HHHHHHh
Confidence 599999988876432 225789999999 99999 9999888766677 3444 4688884
No 153
>PLN02762 pyruvate kinase complex alpha subunit
Probab=21.58 E-value=2.3e+02 Score=29.31 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=47.4
Q ss_pred HHHHHhhccCccEEEEe-C----CCC----HHHHHHHHHHhhhhccCCcEEEEecC----------CCCC---CCchhhc
Q psy8082 136 IDAAKNLLLKAKVIMFQ-G----ETP----WETTLYCLSKLHVSLESRAKIIVNPS----------PAVY---PLNPIVM 193 (379)
Q Consensus 136 l~~~~~~l~~~~~v~~~-~----~~~----~~~~~~~~~~a~~~~~~~~~v~~D~~----------~~~~---~~~~~ll 193 (379)
++.+.++++.+|.+++. | +.+ +..-+++++.| ++.|+||++-.+ |... +....++
T Consensus 259 v~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c---~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVl 335 (509)
T PLN02762 259 LKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLC---RQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 335 (509)
T ss_pred HHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHH---HHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHH
Confidence 34444567889999885 2 334 34457889999 999999987443 2211 2233578
Q ss_pred ccCeEEEeCHHHHHH
Q psy8082 194 ILADIICINEQEAEI 208 (379)
Q Consensus 194 ~~~dil~~N~~E~~~ 208 (379)
+.+|.+.++.|-+.-
T Consensus 336 DGtDavMLSgETA~G 350 (509)
T PLN02762 336 QRADALMLSGESAMG 350 (509)
T ss_pred hCCCEEEEcchhcCC
Confidence 899999999887643
No 154
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.17 E-value=1.2e+02 Score=30.58 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHCCCCeeEEEE
Q psy8082 53 KGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 53 ~a~nvA~~l~~LG~~v~lvs~ 73 (379)
+|..+|..+++.|.+|.++-.
T Consensus 14 aG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 14 GGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred HHHHHHHHHHhCCCeEEEEec
Confidence 478889999999999999873
No 155
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.13 E-value=3e+02 Score=23.92 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=35.2
Q ss_pred ecCCh-HHHHHHHHHHCCCCeeEEEE-ecCChhHHHHHHHHhhhcCCcccce
Q psy8082 49 RFSGK-GANQCVAAAKLRASVALISK-LGNDKFGKSYLEELRKYNSINTKYI 98 (379)
Q Consensus 49 ~~GG~-a~nvA~~l~~LG~~v~lvs~-vG~D~~g~~i~~~l~~~~gi~~~~i 98 (379)
..||+ ..-.|..|.+||.++.+|+. +|-=...+.-.+.-+. .|.+..-+
T Consensus 7 fSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~-lgF~h~vl 57 (198)
T COG2117 7 FSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAI-LGFPHEVL 57 (198)
T ss_pred ecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHH-hCCCccee
Confidence 44676 45678889999999999996 8864456666666666 66666544
No 156
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.12 E-value=1.2e+02 Score=32.12 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHCCCCeeEEEEe
Q psy8082 50 FSGKGANQCVAAAKLRASVALISKL 74 (379)
Q Consensus 50 ~GG~a~nvA~~l~~LG~~v~lvs~v 74 (379)
.|++|..+|+.++..|.+|.++.+-
T Consensus 58 ~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 58 AGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred ccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3566777888888888888887653
No 157
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.98 E-value=3.1e+02 Score=21.80 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.2
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCC
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY 186 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~ 186 (379)
+.++|+++++. +.+...++...+ .+.|+ .++|.+...+
T Consensus 64 ~~~~Dvvf~a~--~~~~~~~~~~~~---~~~g~-~ViD~s~~~R 101 (121)
T PF01118_consen 64 LSDVDVVFLAL--PHGASKELAPKL---LKAGI-KVIDLSGDFR 101 (121)
T ss_dssp HTTESEEEE-S--CHHHHHHHHHHH---HHTTS-EEEESSSTTT
T ss_pred hhcCCEEEecC--chhHHHHHHHHH---hhCCc-EEEeCCHHHh
Confidence 67999999975 456777778777 77787 6789887653
No 158
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.95 E-value=3.3e+02 Score=24.35 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhh
Q psy8082 51 SGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRK 89 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~ 89 (379)
||-|..++..+.+.|.++.+++.- ....+.+.+.+++
T Consensus 21 ~~IG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~ 57 (256)
T PRK06124 21 RGLGFEIARALAGAGAHVLVNGRN--AATLEAAVAALRA 57 (256)
T ss_pred chHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHh
Confidence 566788888888889887666542 1233445555555
No 159
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=20.84 E-value=1.3e+02 Score=29.62 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHCCCCeeEEE
Q psy8082 53 KGANQCVAAAKLRASVALIS 72 (379)
Q Consensus 53 ~a~nvA~~l~~LG~~v~lvs 72 (379)
.|..+|..|++.|.+|.++=
T Consensus 12 ~G~~~A~~La~~g~~V~vle 31 (410)
T PRK12409 12 TGVTTAYALAQRGYQVTVFD 31 (410)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 57889999999999988874
No 160
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=20.81 E-value=8.2e+02 Score=24.14 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=53.6
Q ss_pred CeeEEEEecCChhHHHHHH-HHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccC
Q psy8082 67 SVALISKLGNDKFGKSYLE-ELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~-~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~ 145 (379)
++.++|.-| ..|+.+.+ .|++ ..+....+........+.....+. |+ ........+.+ .+++
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~-~~f~~~~l~~~ss~~sg~~~~~f~--g~--------~~~v~~~~~~~----~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEE-NDFDLIEPVFFSTSQAGGAAPSFG--GK--------EGTLQDAFDID----ALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhC-CCCCcCcEEEecchhhCCcccccC--CC--------cceEEecCChh----HhcC
Confidence 455666666 47999998 7777 666544443332222221111111 11 00111111111 1568
Q ss_pred ccEEEEeCCCCHHHHHHHHHHhhhhccCCcE-EEEecCCCC
Q psy8082 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV 185 (379)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~-v~~D~~~~~ 185 (379)
+|+++++. +.+...++...+ .+.|.+ +++|.+...
T Consensus 66 ~Divf~a~--~~~~s~~~~~~~---~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITCQ--GGDYTNEVYPKL---RAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEECC--CHHHHHHHHHHH---HhCCCCeEEEECChHH
Confidence 99999865 456778888887 778874 788988654
No 161
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.62 E-value=1.1e+02 Score=28.72 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccC--CChhHHHHHHHHHHHHhcCCCCCHH
Q psy8082 216 NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIES--EGVGDCFVGALAYYFKAGQKGGNLD 293 (379)
Q Consensus 216 ~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDt--tGAGDaF~ag~~~~l~~~~~g~~l~ 293 (379)
++.++.+..+.+.+.+-..+++|..+.=+-.|..-..-...++. .++.++|+ +++|=.+.+-.++.+.++ |.+++
T Consensus 63 s~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~-~~i~ViDS~~~s~~~g~~v~~a~~~~~~--G~s~~ 139 (275)
T TIGR00762 63 SPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDE-AKVTVIDSKSASMGLGLLVLEAAKLAEE--GKSLE 139 (275)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCC-CCEEEECChHHHHHHHHHHHHHHHHHHc--CCCHH
Confidence 45778888888888887777777755322111110000011233 46778887 566777777777777764 99999
Q ss_pred HHHhh
Q psy8082 294 SCRLR 298 (379)
Q Consensus 294 ~A~~~ 298 (379)
+.+..
T Consensus 140 eI~~~ 144 (275)
T TIGR00762 140 EILAK 144 (275)
T ss_pred HHHHH
Confidence 99888
No 162
>KOG3361|consensus
Probab=20.55 E-value=72 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.5
Q ss_pred cCCChhHHHHH-HHHHHHHhcCCCCCHHHHHhh
Q psy8082 267 ESEGVGDCFVG-ALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 267 DttGAGDaF~a-g~~~~l~~~~~g~~l~~A~~~ 298 (379)
-|.|||-+-++ .++..|.+ |++++|++.+
T Consensus 85 KTFGCGSAIASSS~aTewvk---gkt~dea~kI 114 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVK---GKTLDEALKI 114 (157)
T ss_pred eecccchHhhhhHHHHHHHc---cccHHHHHhc
Confidence 57899988765 56667999 9999999999
No 163
>PLN02461 Probable pyruvate kinase
Probab=20.48 E-value=2.4e+02 Score=29.21 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=48.9
Q ss_pred HHHHHHHHhhccCccEEEEe-C----CCC----HHHHHHHHHHhhhhccCCcEEEEecC----------CCCC---CCch
Q psy8082 133 ASDIDAAKNLLLKAKVIMFQ-G----ETP----WETTLYCLSKLHVSLESRAKIIVNPS----------PAVY---PLNP 190 (379)
Q Consensus 133 ~~~l~~~~~~l~~~~~v~~~-~----~~~----~~~~~~~~~~a~~~~~~~~~v~~D~~----------~~~~---~~~~ 190 (379)
++-++.+.++++.+|.+++. | +.+ +..-.++++.| ++.|+||++-.+ |... +...
T Consensus 245 ~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c---~~~gkPVIvATQmLeSMi~np~PTRAEvsDVan 321 (511)
T PLN02461 245 QEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKC---NLAGKPVVTATQMLESMIKSPRPTRAEATDVAN 321 (511)
T ss_pred HHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHH---HHcCCCeEEeehhHHHHhhCCCCchHHHHHHHH
Confidence 34445555668889999986 2 333 34457889999 999999987443 2211 2334
Q ss_pred hhcccCeEEEeCHHHHHH
Q psy8082 191 IVMILADIICINEQEAEI 208 (379)
Q Consensus 191 ~ll~~~dil~~N~~E~~~ 208 (379)
.+++.+|.+.++.|-+.-
T Consensus 322 AV~dG~D~vMLS~ETA~G 339 (511)
T PLN02461 322 AVLDGTDCVMLSGETAAG 339 (511)
T ss_pred HHHhCCcEEEEechhcCC
Confidence 567899999998876643
No 164
>PRK07804 L-aspartate oxidase; Provisional
Probab=20.26 E-value=1.6e+02 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|++|..+|+.++..|.+|.++.+
T Consensus 25 G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 25 GVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEc
Confidence 56777888888888888888766
No 165
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=20.21 E-value=8.3e+02 Score=23.95 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=24.9
Q ss_pred cCccEEEEeCCC-C---HHHHHHHHHHhhhhccCCcEEEEecCC
Q psy8082 144 LKAKVIMFQGET-P---WETTLYCLSKLHVSLESRAKIIVNPSP 183 (379)
Q Consensus 144 ~~~~~v~~~~~~-~---~~~~~~~~~~a~~~~~~~~~v~~D~~~ 183 (379)
.+.++|++.... + ...+.++.+.+ +++++.+++|-..
T Consensus 145 ~~tklV~ie~p~NptG~v~dl~~I~~la---~~~gi~livD~t~ 185 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELADIAALAEIA---HAAGALLVVDNCF 185 (390)
T ss_pred cCCeEEEEECCCCCCCCcCCHHHHHHHH---HHcCCEEEEECCC
Confidence 456788874321 1 12356778888 8899999999863
No 166
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=20.07 E-value=1.6e+02 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.2
Q ss_pred ccCCChhHHHHHHHHHHHHhcCCC-CCHHHHHhh
Q psy8082 266 IESEGVGDCFVGALAYYFKAGQKG-GNLDSCRLR 298 (379)
Q Consensus 266 vDttGAGDaF~ag~~~~l~~~~~g-~~l~~A~~~ 298 (379)
.|-.|-||..-|-++|+++. | .+.+||+..
T Consensus 53 ~dkh~kGd~aEA~iAyAWLe---g~it~eEavei 83 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLE---GKITIEEAVEI 83 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHT---TSS-HHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHh---ccccHHHHHHH
Confidence 58899999999999999999 6 588888877
Done!