Query psy8082
Match_columns 379
No_of_seqs 169 out of 1732
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ry7_A Ribokinase; transferase 100.0 4.7E-50 1.6E-54 381.5 30.2 298 14-331 2-302 (304)
2 1rkd_A Ribokinase; carbohydrat 100.0 6.5E-49 2.2E-53 374.7 33.4 305 12-337 2-307 (309)
3 2fv7_A Ribokinase; structural 100.0 2E-48 6.9E-53 375.2 33.5 303 12-331 22-327 (331)
4 3kzh_A Probable sugar kinase; 100.0 8.5E-48 2.9E-52 370.3 30.0 303 12-337 4-309 (328)
5 2rbc_A Sugar kinase, AGR_C_456 100.0 1.1E-46 3.9E-51 364.9 29.2 298 12-336 27-327 (343)
6 3ikh_A Carbohydrate kinase; tr 100.0 8.2E-47 2.8E-51 359.0 27.5 283 15-337 3-288 (299)
7 1vm7_A Ribokinase; TM0960, str 100.0 7.6E-46 2.6E-50 354.2 29.4 294 14-336 14-309 (311)
8 2nwh_A AGR_C_3442P, carbohydra 100.0 3.5E-46 1.2E-50 357.3 27.0 298 14-334 3-305 (317)
9 2c4e_A Sugar kinase MJ0406; tr 100.0 2.5E-46 8.6E-51 355.9 22.3 291 12-337 3-299 (302)
10 3iq0_A Putative ribokinase II; 100.0 9.4E-46 3.2E-50 356.3 25.5 298 12-339 1-314 (330)
11 3vas_A Putative adenosine kina 100.0 3E-46 1E-50 365.5 22.2 299 10-330 20-364 (370)
12 3ljs_A Fructokinase; fructokia 100.0 3.9E-46 1.3E-50 360.0 20.0 294 13-336 3-327 (338)
13 3pl2_A Sugar kinase, ribokinas 100.0 4.5E-45 1.6E-49 349.6 26.3 292 9-331 3-312 (319)
14 3go6_A Ribokinase RBSK; phosph 100.0 4.3E-45 1.5E-49 349.0 25.7 283 13-337 18-304 (310)
15 3hj6_A Fructokinase, FRK; fruc 100.0 8.6E-47 2.9E-51 363.1 12.8 299 2-331 9-322 (327)
16 4du5_A PFKB; structural genomi 100.0 8.2E-45 2.8E-49 350.7 25.9 288 13-331 25-332 (336)
17 3ktn_A Carbohydrate kinase, PF 100.0 1.3E-44 4.5E-49 350.3 26.3 298 14-339 2-333 (346)
18 4e3a_A Sugar kinase protein; s 100.0 9.1E-45 3.1E-49 352.7 24.9 292 12-330 23-346 (352)
19 3h49_A Ribokinase; transferase 100.0 5.9E-44 2E-48 343.1 28.0 300 10-337 1-314 (325)
20 3otx_A Adenosine kinase, putat 100.0 1.2E-44 4.1E-49 350.9 21.3 292 13-327 6-342 (347)
21 2v78_A Fructokinase; transfera 100.0 1.3E-43 4.6E-48 338.6 28.2 287 14-336 1-309 (313)
22 2qcv_A Putative 5-dehydro-2-de 100.0 2.1E-43 7.2E-48 339.8 28.9 299 12-337 9-325 (332)
23 2hlz_A Ketohexokinase; non-pro 100.0 1.3E-42 4.3E-47 332.0 32.6 288 6-321 9-309 (312)
24 3umo_A 6-phosphofructokinase i 100.0 1.3E-42 4.4E-47 331.1 32.5 292 14-336 1-305 (309)
25 1v1a_A 2-keto-3-deoxygluconate 100.0 3.5E-43 1.2E-47 335.1 28.2 280 14-330 1-297 (309)
26 3loo_A Anopheles gambiae adeno 100.0 1.1E-44 3.9E-49 353.6 18.2 289 12-321 21-354 (365)
27 2pkf_A Adenosine kinase; trans 100.0 2E-43 6.9E-48 340.7 25.9 293 15-336 11-319 (334)
28 2dcn_A Hypothetical fructokina 100.0 3.3E-43 1.1E-47 335.5 27.1 286 14-336 1-307 (311)
29 4e84_A D-beta-D-heptose 7-phos 100.0 5.1E-43 1.8E-47 340.3 28.0 291 12-330 51-350 (352)
30 3lhx_A Ketodeoxygluconokinase; 100.0 1.6E-43 5.6E-48 339.0 22.9 273 15-322 5-304 (319)
31 2jg1_A Tagatose-6-phosphate ki 100.0 2.1E-42 7.3E-47 333.0 30.6 292 13-336 19-323 (330)
32 3cqd_A 6-phosphofructokinase i 100.0 4.6E-42 1.6E-46 327.3 30.2 290 15-336 2-305 (309)
33 4e69_A 2-dehydro-3-deoxyglucon 100.0 1.6E-42 5.5E-47 333.6 27.2 275 11-322 20-317 (328)
34 1tyy_A Putative sugar kinase; 100.0 1E-43 3.4E-48 343.6 18.8 285 12-336 22-328 (339)
35 2ajr_A Sugar kinase, PFKB fami 100.0 1.4E-42 4.9E-47 334.3 26.8 287 14-331 12-319 (331)
36 2f02_A Tagatose-6-phosphate ki 100.0 6.3E-42 2.2E-46 328.6 30.6 290 15-336 3-306 (323)
37 1bx4_A Protein (adenosine kina 100.0 1.5E-43 5.2E-48 342.7 18.1 292 13-327 5-341 (345)
38 3b1n_A Ribokinase, putative; r 100.0 8.1E-43 2.8E-47 335.5 22.5 288 16-337 2-306 (326)
39 3uq6_A Adenosine kinase, putat 100.0 2.2E-42 7.7E-47 338.2 23.1 297 15-330 27-366 (372)
40 2abq_A Fructose 1-phosphate ki 100.0 7.7E-41 2.6E-45 318.5 33.0 286 17-337 3-297 (306)
41 3ie7_A LIN2199 protein; phosph 100.0 1.7E-41 5.7E-46 325.1 28.1 287 16-337 4-303 (320)
42 3ewm_A Uncharacterized sugar k 100.0 1.3E-41 4.6E-46 324.9 26.5 275 14-330 1-294 (313)
43 2jg5_A Fructose 1-phosphate ki 100.0 8E-41 2.7E-45 318.1 31.2 286 16-336 2-296 (306)
44 3bf5_A Ribokinase related prot 100.0 2.6E-42 9E-47 329.1 18.1 276 8-332 14-296 (306)
45 2abs_A Adenosine kinase, AK; r 100.0 2.7E-41 9.3E-46 331.7 25.4 287 13-321 31-375 (383)
46 2qhp_A Fructokinase; NP_810670 100.0 6.8E-41 2.3E-45 317.1 25.9 273 15-326 4-289 (296)
47 2afb_A 2-keto-3-deoxygluconate 100.0 2.7E-40 9.2E-45 320.8 29.5 296 14-337 12-343 (351)
48 4gm6_A PFKB family carbohydrat 100.0 3.2E-41 1.1E-45 327.1 22.0 300 12-338 22-345 (351)
49 3kd6_A Carbohydrate kinase, PF 100.0 4.9E-39 1.7E-43 307.3 24.6 275 15-331 3-292 (313)
50 1vk4_A PFKB carbohydrate kinas 100.0 1E-37 3.4E-42 296.2 15.4 262 34-331 19-293 (298)
51 2yxt_A Pyridoxal kinase; beta 99.9 1.4E-23 4.8E-28 200.0 14.4 214 67-317 12-269 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.9 1.4E-22 4.7E-27 190.4 15.9 211 71-319 27-268 (283)
53 1jxh_A Phosphomethylpyrimidine 99.9 3.5E-22 1.2E-26 188.3 14.5 221 67-318 25-269 (288)
54 1ub0_A THID, phosphomethylpyri 99.9 5E-22 1.7E-26 183.9 14.2 219 69-318 3-244 (258)
55 2i5b_A Phosphomethylpyrimidine 99.8 2.2E-20 7.7E-25 174.1 17.2 156 145-318 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.8 8.5E-18 2.9E-22 158.4 15.5 169 130-316 56-258 (289)
57 3mbh_A Putative phosphomethylp 99.7 5.3E-17 1.8E-21 153.1 18.3 156 145-317 77-258 (291)
58 3h74_A Pyridoxal kinase; PSI-I 99.7 1.8E-17 6.2E-22 155.6 14.5 154 145-317 74-248 (282)
59 3zs7_A Pyridoxal kinase; trans 99.7 1.6E-16 5.3E-21 150.5 16.8 169 130-316 55-260 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.6 1.2E-14 4.1E-19 135.6 13.6 145 143-298 56-220 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.5 4.1E-13 1.4E-17 137.1 16.0 149 144-298 90-264 (550)
62 1v8a_A Hydroxyethylthiazole ki 99.2 6.7E-11 2.3E-15 109.7 10.3 145 142-298 53-216 (265)
63 2r3b_A YJEF-related protein; p 98.9 1.2E-08 4.2E-13 96.4 13.7 137 143-298 109-257 (310)
64 3dzv_A 4-methyl-5-(beta-hydrox 98.9 8.6E-08 3E-12 88.7 17.2 156 129-298 45-225 (273)
65 3rpz_A ADP/ATP-dependent NAD(P 98.8 2.4E-08 8.2E-13 92.9 12.9 158 143-321 96-260 (279)
66 3bgk_A SMU.573, putative uncha 98.8 9.8E-09 3.4E-13 97.1 10.2 141 143-298 123-274 (311)
67 3rss_A Putative uncharacterize 98.8 2.6E-08 8.8E-13 100.1 12.5 154 131-298 306-465 (502)
68 3drw_A ADP-specific phosphofru 98.4 2.5E-06 8.5E-11 84.2 13.4 186 47-238 113-357 (474)
69 3nl6_A Thiamine biosynthetic b 98.3 2.8E-05 9.6E-10 78.6 17.9 158 129-298 292-491 (540)
70 3hpd_A Hydroxyethylthiazole ki 98.1 3.4E-05 1.2E-09 70.8 13.2 154 130-298 44-216 (265)
71 1ua4_A Glucokinase, ADP-depend 97.9 0.00031 1.1E-08 69.3 15.4 183 49-238 109-342 (455)
72 1gc5_A ADP-dependent glucokina 97.7 0.00075 2.6E-08 66.6 15.8 179 49-235 117-349 (467)
73 1l2l_A ADP-dependent glucokina 97.7 0.00039 1.3E-08 68.5 13.7 177 49-235 112-342 (457)
74 3k5w_A Carbohydrate kinase; 11 97.6 0.00042 1.4E-08 68.9 11.6 142 143-298 290-437 (475)
75 2fcj_A Small toprim domain pro 48.7 15 0.0005 28.9 3.5 84 134-224 14-101 (119)
76 3vzx_A Heptaprenylglyceryl pho 47.7 68 0.0023 28.0 8.1 63 128-200 16-80 (228)
77 3sho_A Transcriptional regulat 46.9 54 0.0018 26.9 7.2 103 129-243 22-126 (187)
78 3w01_A Heptaprenylglyceryl pho 44.8 1.2E+02 0.004 26.7 9.2 65 126-200 19-85 (235)
79 4fk1_A Putative thioredoxin re 39.4 22 0.00075 31.9 3.8 20 54-73 18-37 (304)
80 2bdq_A Copper homeostasis prot 37.8 1.5E+02 0.0053 25.7 8.7 40 128-167 67-116 (224)
81 2gag_B Heterotetrameric sarcos 35.2 30 0.001 32.2 4.1 23 51-73 30-54 (405)
82 2cul_A Glucose-inhibited divis 32.4 51 0.0018 28.2 4.9 23 51-73 12-34 (232)
83 2xhz_A KDSD, YRBH, arabinose 5 27.6 98 0.0033 25.1 5.7 102 129-244 32-136 (183)
84 3rd5_A Mypaa.01249.C; ssgcid, 26.2 84 0.0029 27.8 5.3 22 51-72 26-47 (291)
85 3h7a_A Short chain dehydrogena 25.1 1.3E+02 0.0044 26.0 6.3 45 51-98 17-61 (252)
86 3fxa_A SIS domain protein; str 24.6 86 0.0029 26.1 4.8 101 130-243 28-131 (201)
87 4a9w_A Monooxygenase; baeyer-v 24.4 66 0.0022 28.8 4.3 21 53-73 14-34 (357)
88 4iin_A 3-ketoacyl-acyl carrier 24.3 83 0.0029 27.5 4.9 46 51-98 39-84 (271)
89 3etn_A Putative phosphosugar i 23.5 1.8E+02 0.0061 24.7 6.7 101 130-243 38-147 (220)
90 1mo9_A ORF3; nucleotide bindin 23.1 82 0.0028 30.8 5.0 21 53-73 54-74 (523)
91 4a5l_A Thioredoxin reductase; 22.5 66 0.0022 28.5 3.8 19 54-72 16-34 (314)
92 2ywl_A Thioredoxin reductase r 22.4 1E+02 0.0036 24.7 4.8 40 54-94 13-72 (180)
93 2orv_A Thymidine kinase; TP4A 22.1 3.9E+02 0.013 23.2 9.5 53 143-200 88-147 (234)
94 1c0p_A D-amino acid oxidase; a 22.0 76 0.0026 28.9 4.3 23 51-73 15-37 (363)
95 3can_A Pyruvate-formate lyase- 21.6 3.1E+02 0.011 21.9 9.3 72 157-234 18-95 (182)
96 2gk4_A Conserved hypothetical 21.5 87 0.003 27.4 4.2 23 51-73 29-51 (232)
97 1yxm_A Pecra, peroxisomal tran 21.1 98 0.0033 27.4 4.7 22 51-72 28-49 (303)
98 1ztd_A Hypothetical protein PF 20.2 1.1E+02 0.0038 23.4 3.9 31 266-298 64-94 (133)
No 1
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=4.7e-50 Score=381.54 Aligned_cols=298 Identities=27% Similarity=0.396 Sum_probs=277.0
Q ss_pred CCcEEEECccccceecccCCCCCCCCce-ecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETV-KGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~-~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
|++|+|+|++++|++..++++|.+++.+ ........+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +|
T Consensus 2 m~~v~viG~~~~D~~~~~~~~p~~g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~-~g 80 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKV-AH 80 (304)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHHHHHHHH-TT
T ss_pred CCcEEEEccceeEEEEeccCCCCCCCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHHHHHHHH-cC
Confidence 5789999999999999999999988888 888899999999999999999999999999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhcc
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLE 172 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 172 (379)
|+++++...++.+|+.+++.++++|+++++.+.+++..+++++++...+.+++++++|+++..+.+.+.++++.+ ++
T Consensus 81 v~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~ 157 (304)
T 3ry7_A 81 IDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIA---KA 157 (304)
T ss_dssp CBCTTCEEESSSCCEEEEEEECSSCCEEEEEECGGGGGCCHHHHHTTHHHHHTCSEEEEETTSCHHHHHHHHHHH---HH
T ss_pred CcchhEEEcCCCCCcEEEEEECCCCCEEEEEecCchhcCCHHHHHHHHHHhccCCEEEEcCCCCHHHHHHHHHHH---HH
Confidence 999999887888999999999999999988888888899999988655568899999999998999999999999 99
Q ss_pred CCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC
Q psy8082 173 SRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252 (379)
Q Consensus 173 ~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~ 252 (379)
.+.++++||.+. .+....+++++|++++|++|++.|++....+.+++.++++.|.+++++.++||.|++|+++++++
T Consensus 158 ~~~~v~~D~~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~-- 234 (304)
T 3ry7_A 158 HGVTTVLNPAPA-KALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKN-- 234 (304)
T ss_dssp TTCEEEEECCSC-CCCCHHHHTTCSEECCBHHHHHHHHSCCCCSHHHHHHHHHHHHHTTCCEEEEECGGGCEEEECSS--
T ss_pred cCCEEEEeCCcc-ccccHHHHHhCCEEecCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEeCCCceEEEECC--
Confidence 999999999864 24667899999999999999999999877777788999999999999999999999999999876
Q ss_pred ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC-CCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 253 RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG-GNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 253 ~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g-~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
+.+++|+ ++++++|||||||+|+|||+++|++ | +++++|+++ |+++| ++|++.|+.+++|+.+++
T Consensus 235 ~~~~~~~-~~v~~vdttGAGDaf~a~~~~~l~~---g~~~~~~a~~~---------A~~~aa~~~~~~G~~~~~p~~~ev 301 (304)
T 3ry7_A 235 QSQHIEA-YKVNAIDTTAAGDTFIGAFVSRLNK---SQDNLADAIDF---------GNKASSLTVQKHGAQASIPLLEEV 301 (304)
T ss_dssp CEEEECC-SSCCSSCCSSHHHHHHHHHHHHCCT---TCTTHHHHHHH---------HHHHHHTTSCCCCTGGGCCCHHHH
T ss_pred eeEEecC-CCcccCCCCCchHHHHHHHHHHHHc---CCCCHHHHHHH---------HHHHHHHHhCCCCccccCCCHHHH
Confidence 6899999 8899999999999999999999999 9 999999999 99999 999999999999999886
Q ss_pred H
Q psy8082 331 F 331 (379)
Q Consensus 331 ~ 331 (379)
.
T Consensus 302 ~ 302 (304)
T 3ry7_A 302 N 302 (304)
T ss_dssp H
T ss_pred h
Confidence 4
No 2
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=6.5e-49 Score=374.68 Aligned_cols=305 Identities=29% Similarity=0.416 Sum_probs=274.7
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
++|++|+|+|++++|++..++++|.+++.+....+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 2 ~~~~~v~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~-~ 80 (309)
T 1rkd_A 2 QNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLAT-D 80 (309)
T ss_dssp --CCEEEEECCCEEEEEEECSSCCCTTCCCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHHHHHHHHT-T
T ss_pred CCCCeEEEECcceEeEEEecCCCCCCCCeeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHHHHHHHHH-c
Confidence 456789999999999999999999988888888899999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
||+++++...++.+|+.++++++++|+++++.+.+++..+++++++...+.+++++++|+++..+.+.+..+++.+ +
T Consensus 81 gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~ 157 (309)
T 1rkd_A 81 NIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIA---H 157 (309)
T ss_dssp TEECTTEEEETTCCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHHTTHHHHHHCSEEEECSSSCHHHHHHHHHHH---H
T ss_pred CCCccceEecCCCCCceEEEEECCCCCeEEEEeCCchhcCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHHH---H
Confidence 9999999877788999999999988999988777888889999887544457899999999988888999999999 8
Q ss_pred cCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCC
Q psy8082 172 ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~ 251 (379)
+.+.++++||.+.. .....+++++|++++|++|++.|++....+.++..++++.|.++|++.|+||+|++|+++++++
T Consensus 158 ~~g~~v~~D~~~~~-~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~- 235 (309)
T 1rkd_A 158 QNKTIVALNPAPAR-ELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNG- 235 (309)
T ss_dssp HTTCEEEECCCSCC-CCCHHHHTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHTTCSEEEEECGGGCEEEEETT-
T ss_pred HcCCEEEEECCccc-cchHHHHhhCCEEEcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEECCCcEEEEeCC-
Confidence 89999999998652 3456789999999999999999999866666778888999999999999999999999998876
Q ss_pred CceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 252 ~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
+.+++|+ ++++++|||||||+|+|+|+++|++ |+++++|+++ |+++| +++++.|+..++|+.+++
T Consensus 236 -~~~~~~~-~~v~~vdt~GAGD~f~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~~~~~G~~~~~p~~~ev 301 (309)
T 1rkd_A 236 -EGQRVPG-FRVQAVDTIAAGDTFNGALITALLE---EKPLPEAIRF---------AHAAAAIAVTRKGAQPSVPWREEI 301 (309)
T ss_dssp -EEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSSGGGCCCHHHH
T ss_pred -ceEEcCC-CCCCcCCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHcCCCCccCCCCCHHHH
Confidence 6888999 8889999999999999999999999 9999999999 99999 999999998889999886
Q ss_pred HHHHHHh
Q psy8082 331 FVSWFKN 337 (379)
Q Consensus 331 ~~~~~~~ 337 (379)
. ++++.
T Consensus 302 ~-~~~~~ 307 (309)
T 1rkd_A 302 D-AFLDR 307 (309)
T ss_dssp H-HHHHT
T ss_pred H-HHHhc
Confidence 4 55543
No 3
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=2e-48 Score=375.16 Aligned_cols=303 Identities=37% Similarity=0.603 Sum_probs=272.7
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
++|++|+|+|++++|++..++++|.+++.+....+...+||+++|+|+++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 22 ~~~~~vlviG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~-~ 100 (331)
T 2fv7_A 22 EEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQ-N 100 (331)
T ss_dssp --CCSEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHT-T
T ss_pred cccCCEEEECcccEEEEEecCCCCCCCceEecCceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHHHHHHHHHH-c
Confidence 345789999999999999999999988888888899999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
||+++++...++.+|++++++++++|+++++.+.+++..+++++++...+.+++++++++++..+.+.+..+++.+ +
T Consensus 101 Gv~~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~ga~~~l~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~ 177 (331)
T 2fv7_A 101 DISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMA---R 177 (331)
T ss_dssp TEECTTEEEESSSCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHHHTHHHHHHCSEEEECSSSCHHHHHHHHHHH---H
T ss_pred CCcceeeEecCCCCCceEEEEECCCCCeEEEecCCccccCCHHHHHHHHHhhccCCEEEEecCCCHHHHHHHHHHH---H
Confidence 9999999887788999999999988999988888887889999887654457889999999888888999999999 8
Q ss_pred cCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCC
Q psy8082 172 ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~ 251 (379)
+.+.++++||.+........+++++|++++|++|++.|++....+.+++.++++.|.++|++.|+||+|++|++++++++
T Consensus 178 ~~g~~v~~Dp~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~ 257 (331)
T 2fv7_A 178 RSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTE 257 (331)
T ss_dssp HTTCEEEECCCSCCTTCCTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTTTCSEEEEECGGGCEEEEESSC
T ss_pred HcCCEEEEeCCcccccchHHHHhcCCEEEeCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEECCCceEEEECCC
Confidence 89999999998754445568899999999999999999998666667888899999999999999999999999987652
Q ss_pred CceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC--CCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG--GNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 252 ~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g--~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
.+.+++|+ ++++++|||||||+|+|+|+++|++ | +++++|+++ |+++| +++++.|+.+++|+.+
T Consensus 258 ~~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~~~a~~~---------A~~~aa~~v~~~G~~~~~p~~~ 324 (331)
T 2fv7_A 258 PEPKHIPT-EKVKAVDTTGAGDSFVGALAFYLAY---YPNLSLEDMLNR---------SNFIAAVSVQAAGTQSSYPYKK 324 (331)
T ss_dssp CSCEEECC-CCCCCSCCTTHHHHHHHHHHHHHHH---CTTSCHHHHHHH---------HHHHHHHHHTSSSGGGGCCCGG
T ss_pred CceeEecC-CCCccCCCCCchHHHHHHHHHHHHh---CCCCCHHHHHHH---------HHHHHHHHhCCCCCccCCCCHH
Confidence 13678898 8889999999999999999999999 9 999999999 99999 9999999988899998
Q ss_pred HHH
Q psy8082 329 SAF 331 (379)
Q Consensus 329 ~~~ 331 (379)
++.
T Consensus 325 ev~ 327 (331)
T 2fv7_A 325 DLP 327 (331)
T ss_dssp GSC
T ss_pred HHh
Confidence 864
No 4
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=8.5e-48 Score=370.30 Aligned_cols=303 Identities=19% Similarity=0.296 Sum_probs=270.5
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
+++++|+|+|++++|++..++..|.++++... .+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 4 ~~~~~v~viG~~~vD~~~~~~~~~~~g~~~~~-~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~-~ 81 (328)
T 3kzh_A 4 RKEPYLLVFGASVVDVFGFSKASYRPYNSTPG-HVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGKSIVEHSKK-I 81 (328)
T ss_dssp CCCCCEEEECCCEEEEEEEESSCCCTTSEEEE-EEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHHHHHHHHHH-H
T ss_pred CCCCcEEEECcEEeeeeeccCCCCCCCCCceE-EEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHHHHHHHHHH-c
Confidence 46689999999999999999999988888877 888999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEe-cCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhh
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNI-IPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVS 170 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~ 170 (379)
||+++++...++.+|+.++++++++|++.+.. ..++...+++++++...+.+..++++++++..+ +.+..+++ +
T Consensus 82 gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~-a--- 156 (328)
T 3kzh_A 82 GYHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSIGAMNTDFIDSKREIFENAEYTVLDSDNP-EIMEYLLK-N--- 156 (328)
T ss_dssp TEECTTCEECTTCCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHHHTHHHHHTCSEEEEESSCH-HHHHHHHH-H---
T ss_pred CCCccceEEeCCCCCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHHHHHHHhhccCCEEEEeCCcH-HHHHHHHH-H---
Confidence 99999887777888999999999999998754 345667788888876556688999999999877 77777777 7
Q ss_pred ccCCcEEEEecCCCCC-CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 171 LESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
++.+.++++||.+... +.+..+++++|++++|++|++.|++....+.+++.++++.|.++|++.++||+|++|++++++
T Consensus 157 ~~~~~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 236 (328)
T 3kzh_A 157 FKDKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGIFYNDG 236 (328)
T ss_dssp HTTTSEEEEECCSHHHHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHHTCCEEEEECGGGCEEEECS
T ss_pred hhcCCcEEEEeCCHHHHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCEEEEeC
Confidence 8899999999985321 235578899999999999999999987777788899999999999999999999999999987
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
+ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.|+.++.|+.+
T Consensus 237 ~--~~~~~~~-~~v~vvdttGAGDaf~ag~~~~l~~---g~~~~~a~~~---------A~a~aa~~v~~~G~~~~~~~~~ 301 (328)
T 3kzh_A 237 V--SCGKIKA-TEVDVKNVTGAGDSFVAGLGYGYMN---KMPIEDIVKF---------AMTMSNITISHEETIHPDMALD 301 (328)
T ss_dssp S--CEEEEEE-SSCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSSSCTTCSHH
T ss_pred C--ceEEecC-CCcccCCCCChhHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCCCCCcCCHH
Confidence 6 5889999 8899999999999999999999999 9999999999 99999 9999999999999999
Q ss_pred HHHHHHHHh
Q psy8082 329 SAFVSWFKN 337 (379)
Q Consensus 329 ~~~~~~~~~ 337 (379)
++. ++++.
T Consensus 302 ~v~-~~~~~ 309 (328)
T 3kzh_A 302 TVL-AKLEK 309 (328)
T ss_dssp HHH-HHHHT
T ss_pred HHH-HHhhh
Confidence 874 55554
No 5
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.1e-46 Score=364.86 Aligned_cols=298 Identities=17% Similarity=0.201 Sum_probs=261.0
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
+++++|+|+|++++|++..++++|.+++.+....+...+||+++|+|+++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 27 ~~~~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~-~ 105 (343)
T 2rbc_A 27 PGGKHVLCVGAAVLDTLFRVADMPKGEGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTRILRDLSE-S 105 (343)
T ss_dssp -CCCEEEEESCCEEEEEEECSSCCCSSSCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHH-T
T ss_pred ccCCeEEEECcceEEEEeecCCCCCCCCeEeeeeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHH-c
Confidence 345689999999999999999998888888888899999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
||+++++...++.+|+.++++++++|+|+++.+.+++..++++++.. +.+++++++|+++..+ +....+++.+ +
T Consensus 106 GVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~l~~~~~v~~~~~~~-~~~~~~~~~a---~ 179 (343)
T 2rbc_A 106 GIDTSGMTVAPGARSALSTIIIDNRGERLIVPFYDHRLHEKKRACTP--EDIALFDAVLVDVRWP-ELALDVLTVA---R 179 (343)
T ss_dssp TEECTTCEEETTCCCEEEEEEECTTSCEEEEEECCGGGGSSCCCCCH--HHHTTCSEEEECSSSH-HHHHHHHHHH---H
T ss_pred CCceeeEEEcCCCCCceEEEEECCCCCEEEEEcCCCcccCChhHhcH--hhhCCCCEEEEcCCCH-HHHHHHHHHH---H
Confidence 99999998877789999999999899999876777665666655532 2378999999998754 6788889988 8
Q ss_pred cCCcEEEEecCCCCCCCchh-hcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-CEEEEEecCCceEEEec
Q psy8082 172 ESRAKIIVNPSPAVYPLNPI-VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKC-NTVIITLGGSGVVYATR 249 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~~~~~~-ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~-~~vivT~G~~G~~~~~~ 249 (379)
+.+.++++||.+. .+.+.+ +++++|++++|++|++.|++. +++.++++.|.++|+ +.|+||+|++|++++++
T Consensus 180 ~~g~~v~~Dp~~~-~~~~~~~ll~~~dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~~g~~~~VvvT~G~~G~~~~~~ 253 (343)
T 2rbc_A 180 ALGKPAILDGDVA-PVETLEGLAPAATHIVFSEPAATRLTGL-----ETVKDMLPVLHARYPQTFIAVTAGPAGCWWTEA 253 (343)
T ss_dssp HTTCCEEEEECSC-CHHHHHHHGGGCSEEEEEHHHHHHHHCC-----SSHHHHHHHHHHHSTTSEEEEECGGGCEEEECT
T ss_pred HCCCEEEEECCcc-ccccHHHHHhcCCEEEeCHHHHHHHcCC-----CCHHHHHHHHHHhCCCceEEEEECCcceEEEeC
Confidence 8999999999753 334556 899999999999999999997 367788889999999 99999999999999876
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
++.+.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+.+++|+.+
T Consensus 254 ~~~~~~~~~~-~~v~vvDttGAGDaF~ag~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~G~~~~~p~~~ 320 (343)
T 2rbc_A 254 DDPTVHFQTT-MQVEAVDTLAAGDIFHGTFALAMAE---GMQSRAAVRL---------SSVAAALKCTVFGGRIGAPTRE 320 (343)
T ss_dssp TCCCEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSGGGGCCCHH
T ss_pred CCceeEEecC-CCCccccCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhCCCCCccCCCCHH
Confidence 5213788998 8889999999999999999999999 9999999999 99999 9999999988899998
Q ss_pred HHHHHHHH
Q psy8082 329 SAFVSWFK 336 (379)
Q Consensus 329 ~~~~~~~~ 336 (379)
++. ++++
T Consensus 321 ev~-~~l~ 327 (343)
T 2rbc_A 321 ETE-EAMR 327 (343)
T ss_dssp HHH-HHHH
T ss_pred HHH-HHHH
Confidence 874 4443
No 6
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=8.2e-47 Score=358.96 Aligned_cols=283 Identities=20% Similarity=0.232 Sum_probs=258.9
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
++|+|+|++++|++..++++|.+++.+........+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||+
T Consensus 3 ~~i~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i~~~l~~-~gv~ 81 (299)
T 3ikh_A 3 LRVYVTGNITVDETWSIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWIRQQIKN-EPLM 81 (299)
T ss_dssp CCEEEECCCEEEEEEECSSCCCTTCEEECEEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHHHHHGGG-SSCE
T ss_pred ceEEEECceEEEEEEecCCCCCCCCeEEeeeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHH-cCCc
Confidence 589999999999999999999999999988999999999999999999999999999999999999999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCC
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR 174 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~ 174 (379)
+++++ .++.+|+.++++++++|+|+++.+.+++..+++++++...+.+++++++|+++..+.+.+.++++.+ ++.+
T Consensus 82 ~~~v~-~~~~~T~~~~~~~~~~g~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a---~~~g 157 (299)
T 3ikh_A 82 LLPDG-HFNQHSDTSIILNSADGDNAIITTTAAADTFSLDEMIPHMADAVAGDILLQQGNFSLDKTRALFQYA---RSRG 157 (299)
T ss_dssp EESSS-CCSSCCEEEEEECSSSCSCEEEEECHHHHHCCHHHHGGGGTTCCTTCEEEECSCSCHHHHHHHHHHH---HHTT
T ss_pred eeeeE-ecCCCCcEEEEEEcCCCCeEEEEeCCccccCCHHHHHHHHhhhccCCEEEECCCCCHHHHHHHHHHH---HHcC
Confidence 99985 5677899999999999999988877777789998887655568999999999999999999999999 9999
Q ss_pred cEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCce
Q psy8082 175 AKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254 (379)
Q Consensus 175 ~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~ 254 (379)
.++++||++.. +....+++++|++++|++|++.|++ .+++.++||+|++|+++++++ +.
T Consensus 158 ~~v~~D~~~~~-~~~~~ll~~~dil~~N~~E~~~l~g------------------~g~~~vvvt~G~~G~~~~~~~--~~ 216 (299)
T 3ikh_A 158 MTTVFNPSPVN-PDFCHLWPLIDIAVVNESEAELLQP------------------YGVKTLVITQGAAGAWLVQEG--QR 216 (299)
T ss_dssp CEEEECCCSCC-GGGGGCGGGCSEEEEEHHHHHHHCC------------------CSCSEEEEECGGGCEEEECSS--CE
T ss_pred CEEEEccccch-hhHHHHHhhCCEEEecHHHHHHHhc------------------CCCCEEEEEECCCceEEEeCC--ce
Confidence 99999998653 3567889999999999999999876 588999999999999999876 68
Q ss_pred EEEccCCCcCcccCCChhHHHHH-HHHHHHHhcCCCCCHHH-HHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 255 KTITVDHVEYPIESEGVGDCFVG-ALAYYFKAGQKGGNLDS-CRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 255 ~~~~~~~~~~vvDttGAGDaF~a-g~~~~l~~~~~g~~l~~-A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
+++|+ ++++++|||||||+|+| ||+++|++ |+++++ |+++ |+++| ++|++.|+.+++|+.+++.
T Consensus 217 ~~~~~-~~v~vvDttGAGDaf~a~~~~~~l~~---g~~~~~~a~~~---------a~~~aa~~v~~~G~~~~~p~~~ev~ 283 (299)
T 3ikh_A 217 QFCPA-VPAEALDTTGAGDTFLAVMLASALLR---GVAPDALALAH---------ASRAAAITVSRRGTLSAFPGSRELA 283 (299)
T ss_dssp EEECC-CCCCCSCCTTHHHHHHHHHHHHHHHT---TSSSCHHHHHH---------HHHHHHHHHHSSSSTTTSCCHHHHH
T ss_pred EEeCC-CCCccCCCCCchHHHHHHHHHHHHHc---CCCHHHHHHHH---------HHHHHHHHhCCCcccccCCCHHHHH
Confidence 99999 88899999999999999 99999999 999999 9999 99999 9999999999999999874
Q ss_pred HHHHHh
Q psy8082 332 VSWFKN 337 (379)
Q Consensus 332 ~~~~~~ 337 (379)
++++.
T Consensus 284 -~~l~~ 288 (299)
T 3ikh_A 284 -ALLTT 288 (299)
T ss_dssp -HHHC-
T ss_pred -HHHHh
Confidence 55554
No 7
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=7.6e-46 Score=354.25 Aligned_cols=294 Identities=28% Similarity=0.396 Sum_probs=259.0
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCC-eeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRAS-VALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~-v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
..+|+|+|++++|+++.++++|.+++.+....+...+||+++|+|.++++||.+ +.++|.+|+|.+|+.+++.|++ +|
T Consensus 14 ~~~v~vvG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~l~~~L~~-~g 92 (311)
T 1vm7_A 14 FLVISVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLLIENYEK-LG 92 (311)
T ss_dssp CCCEEEECCCEEEEEEECSSCCCTTCEEECSEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHHHHHHHHH-TT
T ss_pred cCCEEEECcceeeEEEecccCCCCCceEecCeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHHHHHHHHH-CC
Confidence 468999999999999999999999999988899999999999999999999999 9999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhcc
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLE 172 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 172 (379)
| ++...++.+|+.+++.++++|+++++.+.+++..+++++++ .+.+++++++++++..+.+.+..+ + ++
T Consensus 93 V---~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~---a---~~ 161 (311)
T 1vm7_A 93 I---TGYIRVSLPTGRAFIEVDKTGQNRIIIFPGANAELKKELID--WNTLSESDILLLQNEIPFETTLEC---A---KR 161 (311)
T ss_dssp E---EEEEECSSCCCEEEEEECTTSCEEEEEECGGGGGCCGGGCC--HHHHTTCSEEEECSSSCHHHHHHH---H---HH
T ss_pred C---EEEEcCCCCCeEEEEEECCCCCEEEEEecCccccCCHHHhC--hhhcccCCEEEEeCCCCHHHHHHH---H---HH
Confidence 9 56666678999999999988999998888887788888765 234789999999988877665444 6 77
Q ss_pred CCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC
Q psy8082 173 SRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252 (379)
Q Consensus 173 ~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~ 252 (379)
.+.++++||.+. .+....+++++|++++|++|++.|++.+..+.+++.++++.|.++|++.|+||+|++|+++++++
T Consensus 162 ~~~~v~~Dp~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~-- 238 (311)
T 1vm7_A 162 FNGIVIFDPAPA-QGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKN-- 238 (311)
T ss_dssp CCSEEEECCCSC-TTCCGGGGGGCSEECCBHHHHHHHHHHHHSCCCCHHHHHHHHHHTTCSEEEEECGGGCEEEEETT--
T ss_pred cCCEEEEeCcch-hhhhHHHHhhCCEEeCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEECCCCeEEEeCC--
Confidence 899999999863 33556889999999999999999988643334567888899999999999999999999998876
Q ss_pred ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 253 RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 253 ~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
+.+++|+ ++++++|||||||+|+|+|+++|++ |+++++|+++ |+++| +++++.|+.+++|+.+++.
T Consensus 239 ~~~~~~~-~~v~~vdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~G~~~~~p~~~ev~ 305 (311)
T 1vm7_A 239 EKKHFPT-FKVKAVDTTAAGDVFNGAFAVALSE---GKNPEEAVIF---------GTAAAAISVTRLGAQSSIPAREEVE 305 (311)
T ss_dssp EEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHTTSSSSGGGCCCHHHHH
T ss_pred ceEEecC-CCcccCCCCccHHHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHhCcCCccccCCCHHHHH
Confidence 5788998 8889999999999999999999999 9999999999 99999 9999999988899998864
Q ss_pred HHHHH
Q psy8082 332 VSWFK 336 (379)
Q Consensus 332 ~~~~~ 336 (379)
++++
T Consensus 306 -~~l~ 309 (311)
T 1vm7_A 306 -AFLK 309 (311)
T ss_dssp -HHHH
T ss_pred -HHHh
Confidence 4443
No 8
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3.5e-46 Score=357.33 Aligned_cols=298 Identities=15% Similarity=0.160 Sum_probs=256.2
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++..+++.|.+++.+... +...+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 3 m~~i~viG~~~~D~~~~~~~~~~~~~~~~~~-~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~-~gV 80 (317)
T 2nwh_A 3 MKKILVLGGAHIDRRGMIETETAPGASNPGS-WMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQ-AGV 80 (317)
T ss_dssp CCEEEEESCCEEEEEEEESSSCCTTSCCCEE-EEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHH-TTC
T ss_pred CCeEEEECchheEEeeccCCCCCCCCCceEe-EEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHHHHHHHHH-cCC
Confidence 5689999999999999998777877776664 88899999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecC-CcCCCCCHHHHHHHH--hhccCccEEEEeCCCCHHHHHHHHHHhhhh
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAK--NLLLKAKVIMFQGETPWETTLYCLSKLHVS 170 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~l~~~~--~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~ 170 (379)
++++ ...++.+|+.++++++++|++++..+. +....+++++++... +.++.++++|+++..+.+.+..+++.+
T Consensus 81 ~~~~-~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--- 156 (317)
T 2nwh_A 81 EDTP-FTFLDRRTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDANLPEDTLTALGLIA--- 156 (317)
T ss_dssp EECC-EEETTSCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSHHHHHHHHHCSEEEEETTSCHHHHHHHHHHH---
T ss_pred CCCC-cccCCCCCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhhhhhhHhccCCEEEEeCCCCHHHHHHHHHHH---
Confidence 9998 456677999999999989999876555 345568888765433 457889999999888889999999999
Q ss_pred ccCCcEEEEecCCCC-CCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy8082 171 LESRAKIIVNPSPAV-YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~-~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~ 249 (379)
++.+.++++||.+.. .+.+.++++++|++++|++|++.|++. +.++..++++.|.++|++.|+||.|++|++++++
T Consensus 157 ~~~g~~v~~Dp~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 233 (317)
T 2nwh_A 157 RACEKPLAAIAISPAKAVKLKAALGDIDILFMNEAEARALTGE---TAENVRDWPNILRKAGLSGGVVTRGASEVVAFNG 233 (317)
T ss_dssp HHTTCCEEEECCSHHHHGGGTTTGGGCSEEEEEHHHHHHHHC--------CTTHHHHHHHTTCCCEEEEETTTEEEEECS
T ss_pred HhcCCeEEEeCCCHHHHHHHHHHhhhCeEecCCHHHHHHHhCC---ChhHHHHHHHHHHHcCCCEEEEEECCCcEEEEcC
Confidence 889999999997521 134567889999999999999999986 2235567788888899999999999999999876
Q ss_pred CCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 250 ~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+..++|+.+
T Consensus 234 ~~-~~~~~~~-~~v~~vdt~GAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~G~~~~~~~~~ 299 (317)
T 2nwh_A 234 TE-KAILHPP-LIREVKDVTGAGDAMASGYLAAIAE---GKTIREALRQ---------GAAAAAITVQSSFATSQDLSKD 299 (317)
T ss_dssp SC-EEEECCC-CSSSCSCCCCSSHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHSSTTCCGGGCCHH
T ss_pred CC-ceEEeCC-CCccccCCCChhHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCCCCCCCCCCHH
Confidence 53 4678898 8889999999999999999999999 9999999999 99999 9999999998889999
Q ss_pred HHHHHH
Q psy8082 329 SAFVSW 334 (379)
Q Consensus 329 ~~~~~~ 334 (379)
++.+.|
T Consensus 300 ~v~~~~ 305 (317)
T 2nwh_A 300 SVEAML 305 (317)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 875444
No 9
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=2.5e-46 Score=355.87 Aligned_cols=291 Identities=19% Similarity=0.269 Sum_probs=252.4
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
++|++|+++|++++|++..++++|.+++.+....+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 3 ~~m~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~-~ 81 (302)
T 2c4e_A 3 GKMEKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSGYERYLKN-L 81 (302)
T ss_dssp CCEEEEEEESCCEEEEEEECSSCCCTTCCCCCSCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSHHHHHHHH-T
T ss_pred CCcCcEEEECceeEEEEecccccCCCCceeeecceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHHHHHHHHH-c
Confidence 455689999999999999999999888888888899999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
||+++++...++.+|+.++++++++|+++++.+.++...+++++++. ++++++|+++..+ +...++++.+ +
T Consensus 82 gv~~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~~~~~~a---~ 152 (302)
T 2c4e_A 82 DINISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPN-----FNTEIVHIATGDP-EFNLKCAKKA---Y 152 (302)
T ss_dssp TCBCTTCEECSSSCCCEEEEEECSSCCEECCEECGGGGGGGGCCCCC-----CCEEEEEECSSCH-HHHHHHHHHH---B
T ss_pred CCcccceEeeCCCCCceEEEEECCCCCEEEEEeCChhhhCCHhhcCc-----ccCCEEEEeCCCc-HHHHHHHHHH---H
Confidence 99999887777778999999998889998877777666666655431 6899999998655 8888999999 8
Q ss_pred cCCcEEEEecCCCCC----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 172 ESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 172 ~~~~~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
+++ ++++||....+ +.+.++++++|++++|++|++.|++....+ +. .|.++ ++.|+||.|++|++++
T Consensus 153 ~~g-~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~-----~~--~l~~~-~~~vvvt~G~~G~~~~ 223 (302)
T 2c4e_A 153 GNN-LVSFDPGQDLPQYSKEMLLEIIEHTNFLFMNKHEFERASNLLNFE-----ID--DYLER-VDALIVTKGSKGSVIY 223 (302)
T ss_dssp TTB-EEEECCGGGGGGCCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC-----HH--HHHTT-CSEEEEECGGGCEEEE
T ss_pred hcC-CEEEeCchhhhhhhHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcc-----HH--HHHhc-CCEEEEEECCCceEEE
Confidence 889 99999985321 234568899999999999999998753211 11 67777 9999999999999999
Q ss_pred ecCCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCC
Q psy8082 248 TRDNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSER 325 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p 325 (379)
+++ +.+++|+ ++++ ++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+..++|
T Consensus 224 ~~~--~~~~~~~-~~v~~~vdt~GAGDaf~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~~~~~G~~~~~p 288 (302)
T 2c4e_A 224 TKD--KKIEIPC-IKAGKVIDPTGAGDSYRAGFLSAYVK---GYDLEKCGLI---------GAATASFVVEAKGCQTNLP 288 (302)
T ss_dssp CSS--CEEEECC-CCCSCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHTTSSSSSTTCC
T ss_pred eCC--cEEEeCC-ccCCcCCcCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHccccccccCC
Confidence 876 5788999 8888 999999999999999999999 9999999999 99999 9999999988899
Q ss_pred ChhHHHHHHHHh
Q psy8082 326 KSNSAFVSWFKN 337 (379)
Q Consensus 326 ~~~~~~~~~~~~ 337 (379)
+.+++. ++++.
T Consensus 289 ~~~ev~-~~~~~ 299 (302)
T 2c4e_A 289 TWDKVV-ERLEK 299 (302)
T ss_dssp CHHHHH-HHHHH
T ss_pred CHHHHH-HHHHh
Confidence 998874 55554
No 10
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=9.4e-46 Score=356.30 Aligned_cols=298 Identities=18% Similarity=0.208 Sum_probs=247.1
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
|.|++|+|+|++++|++...+ .+............+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 1 m~m~~i~viG~~~~D~~~~~~---~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~-~ 76 (330)
T 3iq0_A 1 MSLSKVFTIGEILVEIMASKI---GQPFDQPGIWNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGDINIHRLAA-D 76 (330)
T ss_dssp ---CEEEEESCCEEEEEEEEE---TCCSSSCEEEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHH-T
T ss_pred CCCCCEEEEcceeEEEeccCC---CCCccccccccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHHHHHHHHHH-c
Confidence 356799999999999997532 222222222346789999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEec-C-CcCCCCCHHHHHHHHhhccCccEEEEeCCCC-----HHHHHHHH
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNII-P-GANTYLSASDIDAAKNLLLKAKVIMFQGETP-----WETTLYCL 164 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~-~-~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~-----~~~~~~~~ 164 (379)
||+++++.+.++.+|+.+++.++++|++++..+ . ++...++++++.. ..+++++++|+++..+ .+.+.+++
T Consensus 77 gv~~~~v~~~~~~~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~v~~sg~~~~~~~~~~~~~~~~ 154 (330)
T 3iq0_A 77 GVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDE--NILKDCTHFHIMGSSLFSFHMVDAVKKAV 154 (330)
T ss_dssp TCBCTTEEEETTSCCEEEEEEECC---CEEEEECTTSGGGGCCGGGCCG--GGGTTEEEEEEEGGGCSSHHHHHHHHHHH
T ss_pred CCCeeeEEEcCCCCceEEEEEECCCCCeeEEEeccCChhhhCCHhhCCH--hHhccCCEEEEechhhcCcchHHHHHHHH
Confidence 999999988888899999999998999954333 2 4566677777653 3488999999987543 45678888
Q ss_pred HHhhhhccCCcEEEEecCCCC--C------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEE
Q psy8082 165 SKLHVSLESRAKIIVNPSPAV--Y------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~--~------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vi 236 (379)
+.+ ++++.++++||.... | +.+.++++++|++++|++|++.|++. ++..++++.|.++|++.|+
T Consensus 155 ~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~~g~~~vv 226 (330)
T 3iq0_A 155 TIV---KANGGVISFDPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPH-----STPERAIAGFLEEGVKEVI 226 (330)
T ss_dssp HHH---HHTTCEEEEECCCCGGGGGSHHHHHHHHHHHHTCSEECCBGGGTTTTCSC-----SSHHHHHHHHHHHTCSEEE
T ss_pred HHH---HHcCCEEEEcCCCCccccCcHHHHHHHHHHHhhCCEEecCHHHHHHHhCC-----CCHHHHHHHHHHcCCCEEE
Confidence 888 889999999998543 2 23456788999999999999999987 4678888999999999999
Q ss_pred EEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHH
Q psy8082 237 ITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRV 315 (379)
Q Consensus 237 vT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v 315 (379)
||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|
T Consensus 227 vT~G~~G~~~~~~~--~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v 291 (330)
T 3iq0_A 227 VKRGNQGASYYSAN--EQFHVES-YPVEEVDPTGAGDCFGGAWIACRQL---GFDAHRALQY---------ANACGALAV 291 (330)
T ss_dssp EECGGGCEEEECSS--CEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHT
T ss_pred EEeCCCceEEEECC--ceEEecC-CCCccCCCCChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHH
Confidence 99999999999877 6899999 8899999999999999999999999 9999999999 99999 999
Q ss_pred hccccCCCCCChhHHHHHHHHhcC
Q psy8082 316 QLEGKNSSERKSNSAFVSWFKNNG 339 (379)
Q Consensus 316 ~~~G~~~~~p~~~~~~~~~~~~~~ 339 (379)
++.|+..++|+.+++. +++++..
T Consensus 292 ~~~G~~~~~p~~~ev~-~~~~~~~ 314 (330)
T 3iq0_A 292 TRRGPMEGTSRLMEIE-TFIQRHD 314 (330)
T ss_dssp TSCSSSTTCCCHHHHH-HHHHHC-
T ss_pred cCcCCCCCCCCHHHHH-HHHHhcc
Confidence 9999998999999974 5555533
No 11
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=3e-46 Score=365.49 Aligned_cols=299 Identities=19% Similarity=0.182 Sum_probs=261.2
Q ss_pred ccCCCCcEEEECccccceecccCC--------------------CCCCCCceecCcEEEecCChHHHHHHHHHHC---CC
Q psy8082 10 NLKDEADIVVVGSCLVEFITYVQT--------------------LPKPEETVKGYHFEQRFSGKGANQCVAAAKL---RA 66 (379)
Q Consensus 10 ~~~~~~~i~viG~~~iD~i~~~~~--------------------~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~L---G~ 66 (379)
+.|++.+|+++|++++|++..++. +|.+++.+........+||++.|+|+++++| |.
T Consensus 20 ~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P~~ge~~~~~~~~~~~GG~~~N~A~~la~L~~~G~ 99 (370)
T 3vas_A 20 HDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPF 99 (370)
T ss_dssp -CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTHHHHHHTTSSSCEEEEECHHHHHHHHHHHHHCCTT
T ss_pred cccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhcCCCC
Confidence 345668999999999999999983 6666666666789999999999999999999 99
Q ss_pred CeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhcc
Q psy8082 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLL 144 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~ 144 (379)
++.++|.+|+|.+|+.+++.|++ .||+++++...++.+|++++++++ +|+|+++.+.+++..+++++++. ..+.++
T Consensus 100 ~~~~ig~vG~D~~G~~~~~~L~~-~GV~~~~~~~~~~~~Tg~~~i~v~-~g~rt~~~~~ga~~~l~~~~~~~~~~~~~~~ 177 (370)
T 3vas_A 100 VCSYVGCIGADIQGKYIKNDCSA-LDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVE 177 (370)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHH-TTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHHHHH
T ss_pred cEEEEEEEcCChhHHHHHHHHHH-cCCcccccccCCCCCceEEEEEEe-CCceeEEEccchhhhCCHHHcCchhhHHHHh
Confidence 99999999999999999999999 999999987656779999999998 89999988888888999988864 234588
Q ss_pred CccEEEEeCCC---CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCC
Q psy8082 145 KAKVIMFQGET---PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINN 216 (379)
Q Consensus 145 ~~~~v~~~~~~---~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~ 216 (379)
+++++|+++.. +.+.+.++++.+ +++++++++|++...+ +.+.++++++|++++|++|++.|++....+
T Consensus 178 ~~~~v~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~ld~~~~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~ 254 (370)
T 3vas_A 178 KAQVYYIAGFVINTCYEGMLKIAKHS---LENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLL 254 (370)
T ss_dssp HCSEEEEEGGGHHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCC
T ss_pred hCCEEEEEeeeccCCHHHHHHHHHHH---HHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEcCHHHHHHHhcccCCC
Confidence 99999998754 457788999999 8999999999975432 345688999999999999999999875555
Q ss_pred hhhHHHHHHHHHhc-------CCCEEEEEecCCceEEEe--cCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHH
Q psy8082 217 EEDLADCMEKLLDM-------KCNTVIITLGGSGVVYAT--RDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 217 ~~~~~~~~~~l~~~-------g~~~vivT~G~~G~~~~~--~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~ 284 (379)
.+++.++++.|.++ +++.|+||+|++|+++++ ++ +.+++|+ +++ ++||||||||+|+|||+++|+
T Consensus 255 ~~~~~~~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~--~~~~~~~-~~v~~~~vvDttGAGDaF~ag~l~~l~ 331 (370)
T 3vas_A 255 EDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDS--EIHQFMV-EQFKDDQIIDTNGAGDAFAAGFIADYI 331 (370)
T ss_dssp SSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCS--SCEEECC-CCCCTTTCSCCTTHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCC--eEEEEec-ccccCCCcCCCCChHHHHHHHHHHHHH
Confidence 56888999999985 999999999999999998 54 6888998 766 899999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
+ |+++++|+++ |+++| ++|++.|+. +|+.++.
T Consensus 332 ~---g~~l~~a~~~---------A~aaAa~~v~~~G~~--~p~~~~~ 364 (370)
T 3vas_A 332 R---GKPMITSLHA---------AVKAAAYIICRSGFS--LGSRDSY 364 (370)
T ss_dssp T---TCCHHHHHHH---------HHHHHHHHHTSSSSC--CCCGGGG
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHcccCCc--CCCCccc
Confidence 9 9999999999 99999 999999985 6777664
No 12
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=3.9e-46 Score=360.02 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=238.2
Q ss_pred CCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
++++|+|+|++++|++...+..|.+ ...+...+||+++|+|+++++||.++.++|.+|+|.+|+.+++.|++ +|
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~~~~-----~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~l~~~l~~-~g 76 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPLVKKGM-----PRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSFAE-AG 76 (338)
T ss_dssp -CCEEEEESCCEEEEEECCCSSTTS-----CCCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHHHHHHHHH-HT
T ss_pred CCCCEEEEChhhhheeccCCCCccc-----hhceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHHHHHHHHH-cC
Confidence 5678999999999999988776542 56788999999999999999999999999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCC-----CHHHHHHHHH
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYCLS 165 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~~~~ 165 (379)
|+++++.+.++.+|+.+++.++++|+|++..+. +++..+++++++. ..+++++++|+++.. +.+.+.++++
T Consensus 77 V~~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (338)
T 3ljs_A 77 VVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQD--ASFSDALIFHACSNSMTDADIAEVTFEGMR 154 (338)
T ss_dssp CBCTTCEEESSSCCCEEEEECCSTTCCEEEEECSSCGGGGCCGGGCCH--HHHHTEEEEEEEGGGGSSHHHHHHHHHHHH
T ss_pred CCceeEEEcCCCCceEEEEEECCCCCeEEEEeCCCChhHhCCHhhcCH--hHhcCCCEEEECChHhcCchHHHHHHHHHH
Confidence 999999887888999999999999999876654 6677788888765 237899999997532 3467888889
Q ss_pred HhhhhccCCcEEEEecCCC--CC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEE
Q psy8082 166 KLHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236 (379)
Q Consensus 166 ~a~~~~~~~~~v~~D~~~~--~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vi 236 (379)
.+ ++.+.++++||+.. .| +.+..+++++|++++|++|++.|++....+. .++++.|++.|++.|+
T Consensus 155 ~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~---~~~~~~l~~~g~~~vv 228 (338)
T 3ljs_A 155 RA---QAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADA---NAVIQQLWQGRAQLLL 228 (338)
T ss_dssp HH---HHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCH---HHHHHHHTTTTCCEEE
T ss_pred HH---HHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhH---HHHHHHHHhcCCCEEE
Confidence 88 89999999999632 11 2345788999999999999999998632111 2378888889999999
Q ss_pred EEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC--------------CCHHHHHhhccCC
Q psy8082 237 ITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG--------------GNLDSCRLRNGRG 302 (379)
Q Consensus 237 vT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g--------------~~l~~A~~~~~~~ 302 (379)
||.|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ | +++++|+++
T Consensus 229 vT~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaF~a~~~~~l~~---g~~~~~~~~~~~~~~~~l~~al~~---- 298 (338)
T 3ljs_A 229 VTDAAGPVHWYTRT--AGGEVPT-FRVQVQDSNAAGDAFVGGMLYTFAQ---QFDDAAALIDFCHDPESIVSTLRF---- 298 (338)
T ss_dssp EEETTEEEEEEESS--CEEEECC------------CHHHHHHHHHHHHH---HCSSTHHHHHHHTCHHHHHHHHHH----
T ss_pred EeeCCCceEEEECC--ceEEeCC-CCCccCCCCCccHHHHHHHHHHHHh---CCCcccchhccccChHHHHHHHHH----
Confidence 99999999999886 6899999 8899999999999999999999999 8 899999999
Q ss_pred cccHHHHHHH-HHHhccccCCCCCChhHHHHHHHH
Q psy8082 303 ILKELQCLVA-RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 303 ~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
|+++| ++|++.|+.+++|+.+++. ++++
T Consensus 299 -----A~~~aa~~v~~~Ga~~~~p~~~ev~-~~~~ 327 (338)
T 3ljs_A 299 -----AAAVGALAVTRQGAFTAMPMLSEVL-SLIQ 327 (338)
T ss_dssp -----HHHHHGGGC----CCCCTTHHHHHH-HHHH
T ss_pred -----HHHHHHHHhCCCCCCCCCCCHHHHH-HHHh
Confidence 99999 9999999999999998874 4444
No 13
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=4.5e-45 Score=349.59 Aligned_cols=292 Identities=20% Similarity=0.211 Sum_probs=247.4
Q ss_pred cccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHh
Q psy8082 9 ANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELR 88 (379)
Q Consensus 9 ~~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~ 88 (379)
.++|++++|+++|++++|++...+..|.. ....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|+
T Consensus 3 ~~~~~~~~v~~iG~~~~D~~~~~~~~p~~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~ 78 (319)
T 3pl2_A 3 TNLTSTHEVLAIGRLGVDIYPLQSGVGLA----DVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAELE 78 (319)
T ss_dssp ----CCCSEEEESCCEEEECBSSSSCCGG----GCCCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCEEEEChhheeeecccCCCCcc----ccceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 34567789999999999999876655432 34567788999999999999999999999999999999999999999
Q ss_pred hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecC--Cc-CCCCCHHHHHHHHhhccCccEEEEeCC-----CCHHHH
Q psy8082 89 KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GA-NTYLSASDIDAAKNLLLKAKVIMFQGE-----TPWETT 160 (379)
Q Consensus 89 ~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~-~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~~~~~ 160 (379)
+ +||+++++.+.++.+|+.+++.++++|++.+..+. ++ +..+++++++. +.+++++++|+++. ...+..
T Consensus 79 ~-~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 155 (319)
T 3pl2_A 79 R-LGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSL--DDVREADILWFTLTGFSEEPSRGTH 155 (319)
T ss_dssp H-TTEECTTEEEESSSCCCEEEECCBTTTBCCEEEECCSCCGGGGCCGGGSCH--HHHHHCSEEEEEGGGGSSTTHHHHH
T ss_pred H-cCCccccEEecCCCCceEEEEEEcCCCCeeEEEecCCCcccccCChhhCCH--HHhccCCEEEEecccccCchhHHHH
Confidence 9 99999999888888999999888888888876664 34 56788887753 33789999999863 223456
Q ss_pred HHHHHHhhhhccCCcEEEEecCCC--CC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q psy8082 161 LYCLSKLHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK 231 (379)
Q Consensus 161 ~~~~~~a~~~~~~~~~v~~D~~~~--~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g 231 (379)
..+++.+ ++ +.++++||+.. .| +.+.++++++|++++|++|++.|+|. ++..++++.|.++|
T Consensus 156 ~~~~~~~---~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~~g 226 (319)
T 3pl2_A 156 REILTTR---AN-RRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGE-----TEPERAGRALLERG 226 (319)
T ss_dssp HHHHHHH---TT-CSCEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSC-----CSHHHHHHHHHHTT
T ss_pred HHHHHHH---HH-CCcEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCC-----CCHHHHHHHHHhcC
Confidence 6677766 55 56779999732 22 23457889999999999999999997 46788889999999
Q ss_pred CCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHH
Q psy8082 232 CNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLV 311 (379)
Q Consensus 232 ~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~ 311 (379)
++.++||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++
T Consensus 227 ~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~ 291 (319)
T 3pl2_A 227 VELAIVKQGPKGVMAMTKD--ETVEVPP-FFVDVINGLGAGDAFGGALCHGLLS---EWPLEKVLRF---------ANTA 291 (319)
T ss_dssp CSEEEEEEETTEEEEECSS--CEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHH
T ss_pred CCEEEEEECCCCeEEEECC--ceEEeCC-cccCCCCCcCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHH
Confidence 9999999999999999876 6899999 8899999999999999999999999 9999999999 9999
Q ss_pred H-HHHhccccCCCCCChhHHH
Q psy8082 312 A-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 312 A-~~v~~~G~~~~~p~~~~~~ 331 (379)
| +++++.|+..++|+.+|+.
T Consensus 292 aa~~v~~~G~~~~~p~~~ev~ 312 (319)
T 3pl2_A 292 GALVASRLECSTAMPTTDEVE 312 (319)
T ss_dssp HHHHHTSSCSGGGCCCHHHHH
T ss_pred HHHHHhccCCcCCCCCHHHHH
Confidence 9 9999999998999999874
No 14
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=4.3e-45 Score=348.99 Aligned_cols=283 Identities=25% Similarity=0.328 Sum_probs=251.3
Q ss_pred CCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
+|++|+|+|++++|++..++++|.+++.+....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .|
T Consensus 18 mm~~i~viG~~~iD~~~~v~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~-~g 96 (310)
T 3go6_A 18 MAPRVCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQLRAHLRA-NA 96 (310)
T ss_dssp -CCEEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHHHHHHHHHH-TT
T ss_pred ccCCEEEECCceEEEEEecCCCCCCCCeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHH-cC
Confidence 46799999999999999999999999999899999999999999999999999999999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhcc
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLE 172 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 172 (379)
|+++++.. .+.+|+.+++.++++|+++++.+.++...++ ++ .+.++++|++|++++.+.+.+.++++.+ ++
T Consensus 97 V~~~~v~~-~~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~--~~---~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~ 167 (310)
T 3go6_A 97 VGLDRTVT-VPGPSGTAIIVVDASAENTVLVAPGANAHLT--PV---PSAVANCDVLLTQLEIPVATALAAARAA---QS 167 (310)
T ss_dssp CBCTTCEE-CSSCCEEEEEEECTTSCEEEEEECGGGGGCC--CC---TTTTTTCSEEEECSSSCHHHHHHHHHHH---HH
T ss_pred CccceeEe-cCCCCCEEEEEEcCCCCEEEEecCChhhhHH--HH---HHHhhcCCEEEECCCCCHHHHHHHHHHH---HH
Confidence 99999965 4568999999999999999988877776666 33 3458899999999988899999999999 99
Q ss_pred CCcEEEEecCCCCC--CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecC
Q psy8082 173 SRAKIIVNPSPAVY--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250 (379)
Q Consensus 173 ~~~~v~~D~~~~~~--~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~ 250 (379)
.+.++++||.+..+ +.+..+++++|++++|++|++.|++. ++.++||+|++|+++++++
T Consensus 168 ~g~~v~~D~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~-------------------~~~vvvt~G~~Ga~~~~~~ 228 (310)
T 3go6_A 168 ADAVVMVNASPAGQDRSSLQDLAAIADVVIANEHEANDWPSP-------------------PTHFVITLGVRGARYVGAD 228 (310)
T ss_dssp TTCEEEEECCSSSCCHHHHHHHHHHCSEEEEEHHHHHHSSSC-------------------CSEEEEECGGGCEEEEETT
T ss_pred cCCEEEEcCCccccchHHHHHHHhhCCEEEeCHHHHHHHhCC-------------------CCEEEEEECCCCEEEEECC
Confidence 99999999996543 23347899999999999999999873 6889999999999999876
Q ss_pred CCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc-CCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChh
Q psy8082 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG-QKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSN 328 (379)
Q Consensus 251 ~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~-~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~ 328 (379)
+.+++|+ ++++++|||||||+|+|||+++|++. .+|+++++|+++ |+++| ++|++.|+.+++|+.+
T Consensus 229 --~~~~~~~-~~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~l~~a~~~---------A~~~aa~~v~~~G~~~~~p~~~ 296 (310)
T 3go6_A 229 --GVFEVPA-PTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRR---------ACAAGALATLVSGVGDCAPAAA 296 (310)
T ss_dssp --EEEEECC-CCCCCSCCTTHHHHHHHHHHHHCCSSSCCHHHHHHHHHH---------HHHHHHHHTTSSCSTTCCCCHH
T ss_pred --ceEEeCC-CCCCcCcCCCchHHHHHHHHHHHHhcccCCCCHHHHHHH---------HHHHHHHHhCCCCCCCCCCCHH
Confidence 6899999 88999999999999999999999771 115789999999 99999 9999999999999999
Q ss_pred HHHHHHHHh
Q psy8082 329 SAFVSWFKN 337 (379)
Q Consensus 329 ~~~~~~~~~ 337 (379)
++. ++++.
T Consensus 297 ev~-~~l~~ 304 (310)
T 3go6_A 297 AID-AALRA 304 (310)
T ss_dssp HHH-HHHHT
T ss_pred HHH-HHHHh
Confidence 975 44443
No 15
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=8.6e-47 Score=363.14 Aligned_cols=299 Identities=22% Similarity=0.270 Sum_probs=227.5
Q ss_pred CCccccccccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHH
Q psy8082 2 GDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGK 81 (379)
Q Consensus 2 ~~~~~~~~~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~ 81 (379)
|.+.+.+...++|++|+|+|++++|++...+..|.. ....+...+||++.|+|.++++||.++.++|.+|+|.+|+
T Consensus 9 ~~~~~~~~~~~~~~~v~viG~~~~D~~~~~~~~p~~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~ 84 (327)
T 3hj6_A 9 GILNKNFSLSKGDLDVVSLGEILVDMISTEEVNSLS----QSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGN 84 (327)
T ss_dssp -------------CCEEEESCCEEEEECCCCCSSGG----GCCEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHH
T ss_pred EecccccccccCCCCEEEEccceEEEeccCCCCCcc----ccceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHH
Confidence 566667777788899999999999999877665542 4568889999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCC-----CC
Q psy8082 82 SYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGE-----TP 156 (379)
Q Consensus 82 ~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~ 156 (379)
.+++.|++ +||+++++.+.++.+|+.+++..+ +|++++..+.+++..++++++.. +.++++|++|+++. .+
T Consensus 85 ~i~~~l~~-~gv~~~~v~~~~~~~t~~~~v~~~-~g~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~v~~~g~~l~~~~~ 160 (327)
T 3hj6_A 85 YLLDVLKG-EQIITDGIQQDKERRTTIVYVSKS-TRTPDWLPYREADMYLQEDDIIF--ELIKRSKVFHLSTFILSRKPA 160 (327)
T ss_dssp HHHHHHHH-TTCBCTTCEEESSSCCCEEEECCC-TTCCCEEEECSGGGGCCSCCCHH--HHHC--CEEEEESHHHHSHHH
T ss_pred HHHHHHHH-cCCCcccEEEcCCCCceEEEEEec-CCCccEEEecChhhhCChhhcCH--hHhccCCEEEECchHhcCchh
Confidence 99999999 999999998777888988877655 68888887778887787766553 24889999999872 24
Q ss_pred HHHHHHHHHHhhhhccCCcEEEEecCCCC--C-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHH
Q psy8082 157 WETTLYCLSKLHVSLESRAKIIVNPSPAV--Y-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKL 227 (379)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~D~~~~~--~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l 227 (379)
.+.+.++++.+ ++++.++++||.+.. | +.+.++++++|++++|++|++.|++.. +..++++.|
T Consensus 161 ~~~~~~~~~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l 232 (327)
T 3hj6_A 161 RDTAIKAFNYA---REQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPD-----SPENYVKRY 232 (327)
T ss_dssp HHHHHHHHHHH---HHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTS-----CSSGGGGGG
T ss_pred HHHHHHHHHHH---HHCCCEEEEECCCchhhcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHH
Confidence 56778889999 899999999998532 2 234578899999999999999999872 444566778
Q ss_pred HhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHH
Q psy8082 228 LDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKEL 307 (379)
Q Consensus 228 ~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~ 307 (379)
.+++++.|+||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++
T Consensus 233 ~~~g~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~vvdttGAGDaf~ag~~~~l~~---g~~~~~a~~~--------- 297 (327)
T 3hj6_A 233 LELGVKAVILTLGEEGVIASDGE--EIIRIPA-FSEDAVDVTGAGDAFWSGFICGLLD---GYTVKRSIKL--------- 297 (327)
T ss_dssp TTTTCSEEEEECSTTCEEEECSS--CEEESCS-STTC-----CCHHHHHHHHHHTTSS---CSTTHHHHHH---------
T ss_pred HhCCCCEEEEEECCCceEEEeCC--eeEEcCC-cccccCCCcChhHHHHHHHHHHHHc---CCCHHHHHHH---------
Confidence 88899999999999999999876 6899999 8899999999999999999999999 9999999999
Q ss_pred HHHHH-HHHhccccCCCCCChhHHH
Q psy8082 308 QCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 308 A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
|+++| ++|++.|+..++|+.+++.
T Consensus 298 A~a~aa~~v~~~G~~~~~p~~~ev~ 322 (327)
T 3hj6_A 298 GNGVAAFKIRGVGALSPVPSKEDII 322 (327)
T ss_dssp HHCCCSSCC----------------
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 99999 9999999998999998864
No 16
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=8.2e-45 Score=350.74 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=238.0
Q ss_pred CCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
++++|+|+|++++|++.. .+++.+....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +|
T Consensus 25 ~~~~vlviG~~~iD~~~~-----~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~-~G 98 (336)
T 4du5_A 25 SALDVITFGEAMMLLVAD-----RPGPLEHAEAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYLLAAMAA-EG 98 (336)
T ss_dssp -CEEEEEECCCEEEEEES-----SSSCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHT-TT
T ss_pred CCCCEEEEChhhhhccCC-----CCCccchhhheeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHHHHHHHHH-cC
Confidence 457899999999999864 246677788999999999999999999999999999999999999999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEE-ec--CCcCCCCCHHHHHHHHhhccCccEEEEeCCC------CHHHHHHH
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTN-II--PGANTYLSASDIDAAKNLLLKAKVIMFQGET------PWETTLYC 163 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~-~~--~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~------~~~~~~~~ 163 (379)
|+++++.+.++.+|+.+++..+++|+++++ .+ .++...+++++++. ..+++++++|+++.. ..+.+.++
T Consensus 99 V~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~~~~~--~~l~~~~~v~~~g~~~~~~~~~~~~~~~~ 176 (336)
T 4du5_A 99 IDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHMGVADIDE--AWLLSARHLHATGVFPAISATTLPAARKT 176 (336)
T ss_dssp CEEEEEEECTTSCCCEEEECCCSCC--CCEEEECTTCTGGGCCGGGCCH--HHHTTEEEEEEESSGGGSCTTHHHHHHHH
T ss_pred CCcceEEEcCCCCcEEEEEEEcCCCCcceEEEECCCChhHhCChhhCCH--hHhccCCEEEEcCchhhCChHHHHHHHHH
Confidence 999999888888999999998888955533 32 46777888888765 248899999998742 23667788
Q ss_pred HHHhhhhccCCcEEEEecCC--CCCC-------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCE
Q psy8082 164 LSKLHVSLESRAKIIVNPSP--AVYP-------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNT 234 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~--~~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~ 234 (379)
++.+ ++.+.++++||.. ..|. .+.++++++|++++|++|++.|+|. ++..++++.|.++|++.
T Consensus 177 ~~~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~-----~~~~~~~~~l~~~g~~~ 248 (336)
T 4du5_A 177 MDLM---RAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGE-----TTPEGVARFYRQLGAKL 248 (336)
T ss_dssp HHHH---HHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCC-----CSHHHHHHHHHHTTCSE
T ss_pred HHHH---HHCCCEEEEeCcCCchhcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCC-----CCHHHHHHHHHhcCCCE
Confidence 8888 8899999999983 2231 3456789999999999999999997 46788889999999999
Q ss_pred EEEEecCCceEEEecCCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-
Q psy8082 235 VIITLGGSGVVYATRDNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 235 vivT~G~~G~~~~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A- 312 (379)
|+||.|++|+++++++ +.+++|+ ++++ ++|||||||+|+|||+++|++ |+++++|+++ |+++|
T Consensus 249 vvvt~G~~G~~~~~~~--~~~~~~~-~~v~~vvdttGAGDaf~a~~~~~l~~---g~~l~~a~~~---------A~~~aa 313 (336)
T 4du5_A 249 VVVKLGAEGAYFDGEA--GSGRVAG-FPVAEVVDTVGAGDGFAVGVISALLD---GLGVPEAVKR---------GAWIGA 313 (336)
T ss_dssp EEEECGGGCEEEEETT--EEEEECC-CCC-------CHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHH
T ss_pred EEEEecCCceEEEECC--eEEEeCC-ccCCCCCCCccchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHH
Confidence 9999999999999876 6889999 8887 999999999999999999999 9999999999 99999
Q ss_pred HHHhccccCCCCCChhHHH
Q psy8082 313 RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 313 ~~v~~~G~~~~~p~~~~~~ 331 (379)
++|++.|+.+++|+.+++.
T Consensus 314 ~~v~~~G~~~~~p~~~ev~ 332 (336)
T 4du5_A 314 RAVQVLGDSEGLPTRAELN 332 (336)
T ss_dssp HHHC------CCCCHHHHH
T ss_pred HHhccCCCccCCCCHHHHH
Confidence 9999999999999999864
No 17
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-44 Score=350.28 Aligned_cols=298 Identities=13% Similarity=0.152 Sum_probs=251.6
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++. |.+++......+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 2 ~~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~-~gv 75 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTP-----PEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAGKAALRK-LGI 75 (346)
T ss_dssp CCEEEEECCCEEEEEC-----STTCCTTTCSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHH-TTC
T ss_pred CCcEEEeChhhhhhcC-----CCCCcccccceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHH-cCC
Confidence 4689999999999984 3456666778899999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEec----CCcCCCCCHHHHHHHHhhccCccEEEEeCCCC------HHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNII----PGANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYC 163 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~----~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~~~ 163 (379)
+++++... +.+|+++++..+.+++++++.+ .++...+++++++. .+.+++++++|+++..+ .+.+.++
T Consensus 76 ~~~~v~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 153 (346)
T 3ktn_A 76 SDQWVGEK-GDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYDF-EAFLAEVDMVHICGISLSLTEKTRDAALIL 153 (346)
T ss_dssp BCTTEEEC-CSCCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGGSCH-HHHHTTCSEEEECTHHHHHCHHHHHHHHHH
T ss_pred cceEEEeC-CCceEEEEEEecCCCCCceEEecCCCCChhhhCChhhcCh-HHHhCCCCEEEEeCccccCCHHHHHHHHHH
Confidence 99999764 6689999888776666666555 24567788887651 23488999999987532 2677888
Q ss_pred HHHhhhhccCCcEEEEecCC--CCC---------CCchhhcccCeEEEeCHHHHHHhhCCC-CC---ChhhHHHHHHHHH
Q psy8082 164 LSKLHVSLESRAKIIVNPSP--AVY---------PLNPIVMILADIICINEQEAEIITDMK-IN---NEEDLADCMEKLL 228 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~--~~~---------~~~~~ll~~~dil~~N~~E~~~l~~~~-~~---~~~~~~~~~~~l~ 228 (379)
++.+ ++.++++++||+. ..| +.+.++++++|++++|++|++.|++.. .. +.+++.++++.|.
T Consensus 154 ~~~a---~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~l~ 230 (346)
T 3ktn_A 154 AQKA---HAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFM 230 (346)
T ss_dssp HHHH---HHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHH---HHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchHHHHHHHHHHH
Confidence 8888 8999999999973 233 234578899999999999999999976 22 3457888888998
Q ss_pred hc-CCCEEEEEecCCc-------eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhcc
Q psy8082 229 DM-KCNTVIITLGGSG-------VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNG 300 (379)
Q Consensus 229 ~~-g~~~vivT~G~~G-------~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~ 300 (379)
++ |++.|+||+|.+| +++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++
T Consensus 231 ~~~g~~~vvvT~G~~G~~~~~~g~~~~~~~--~~~~~~~-~~v~vvdttGAGDaF~ag~~~~l~~---g~~l~~a~~~-- 302 (346)
T 3ktn_A 231 SQYNLEWFAGTTRSHSQNQNYLSGYLYTQN--EYQQSEK-RPLLNLDRIGAGDAYAAGILYGYSQ---NWSLEKAVTF-- 302 (346)
T ss_dssp HHHTCSEEEEEEEEECSSCEEEEEEEECSS--CEEECCC-EECCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH--
T ss_pred HhcCCCEEEEecCccccccCcceEEEEECC--ceEEeCC-CccccCCCCchhHHHHHHHHHHHHc---CCCHHHHHHH--
Confidence 85 9999999999998 8888765 6889998 8889999999999999999999999 9999999999
Q ss_pred CCcccHHHHHHH-HHHhccccCCCCCChhHHHHHHHHhcC
Q psy8082 301 RGILKELQCLVA-RRVQLEGKNSSERKSNSAFVSWFKNNG 339 (379)
Q Consensus 301 ~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~~~~ 339 (379)
|+++| +++++.|+.+ +|+.+++. +++++++
T Consensus 303 -------A~a~aa~~v~~~G~~~-~p~~~ev~-~~l~~~~ 333 (346)
T 3ktn_A 303 -------ATVNGVLAHTIQGDIP-LTTVKQVN-HVLEHPN 333 (346)
T ss_dssp -------HHHHHHHHTTSSSSCC-CCCHHHHH-HHHHCTT
T ss_pred -------HHHHHHHHhccCCCCC-CCCHHHHH-HHHhcCC
Confidence 99999 9999999987 89998874 5666544
No 18
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=9.1e-45 Score=352.67 Aligned_cols=292 Identities=20% Similarity=0.295 Sum_probs=252.2
Q ss_pred CCCCcEEEECccccceecccCC-------CCCCCCceec-----------CcEEEecCChHHHHHHHHHHCCCCeeEEEE
Q psy8082 12 KDEADIVVVGSCLVEFITYVQT-------LPKPEETVKG-----------YHFEQRFSGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~-------~p~~~~~~~~-----------~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|++++|+++|++++|++..++. +|..+..+.. ......+||++.|+|+++++||.++.++|.
T Consensus 23 m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~ig~ 102 (352)
T 4e3a_A 23 MTRFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMGPALEASGGSAGNTAAGVANLGGKAAYFGN 102 (352)
T ss_dssp CCSEEEEEECCCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHSCSCEEEECCHHHHHHHHHHHHTCCEEEECC
T ss_pred CCcccEEEECCceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHhhhccEecCCHHHHHHHHHHHcCCCeEEEEE
Confidence 6778999999999999999986 5543332211 234678999999999999999999999999
Q ss_pred ecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeC
Q psy8082 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQG 153 (379)
Q Consensus 74 vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~ 153 (379)
+|+|.+|+.+++.|++ .||+++++...++.+|++++++++++|+|++..+.++...+++++++. +.+++++++|+++
T Consensus 103 vG~D~~G~~l~~~l~~-~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~~~~ga~~~l~~~~~~~--~~~~~~~~v~~~G 179 (352)
T 4e3a_A 103 VAADQLGDIFTHDIRA-QGVHYQTKPKGAFPPTARSMIFVTEDGERSMNTYLGACVELGPEDVEA--DVVADAKVTYFEG 179 (352)
T ss_dssp CCSSHHHHHHHHHHHH-TTCEECCCCCCSSSCCEEEEEEECTTSCEEEEEECGGGGGCCGGGCCH--HHHHTEEEEEEEG
T ss_pred ECCChHHHHHHHHHHH-cCCccceeeccCCCCCeEEEEEEcCCCceEEEeccChhhcCChhhCCH--HHHhhCCEEEEee
Confidence 9999999999999999 999999998777779999999999999999988888888899888765 3488999999986
Q ss_pred C-----CCHHHHHHHHHHhhhhccCCcEEEEecCCCC-----CCCchhhcc--cCeEEEeCHHHHHHhhCCCCCChhhHH
Q psy8082 154 E-----TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMI--LADIICINEQEAEIITDMKINNEEDLA 221 (379)
Q Consensus 154 ~-----~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-----~~~~~~ll~--~~dil~~N~~E~~~l~~~~~~~~~~~~ 221 (379)
. .+.+.+.++++.+ ++++.++++||.+.. .+.+.++++ ++|++++|++|++.|++. +++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~a---~~~g~~v~~D~~~~~~~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~-----~~~~ 251 (352)
T 4e3a_A 180 YLWDPPRAKEAILDCARIA---HQHGREMSMTLSDSFCVDRYRGEFLDLMRSGKVDIVFANRQEALSLYQT-----DDFE 251 (352)
T ss_dssp GGGSSSSHHHHHHHHHHHH---HHTTCEEEEECCCHHHHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTC-----SCHH
T ss_pred eecCCchHHHHHHHHHHHH---HHcCCEEEEECCchhhHHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCC-----CCHH
Confidence 4 3457888999999 999999999997532 123457788 899999999999999997 3667
Q ss_pred HHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhcc
Q psy8082 222 DCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNG 300 (379)
Q Consensus 222 ~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~ 300 (379)
++++.+.+ +++.|+||+|++|+++++++ +.+++|+ ++++ ++|||||||+|+|||+++|++ |+++++|+++
T Consensus 252 ~a~~~l~~-~~~~vvvT~G~~G~~~~~~~--~~~~~~~-~~v~~vvDttGAGDaF~agfl~~l~~---g~~l~~a~~~-- 322 (352)
T 4e3a_A 252 EALNRIAA-DCKIAAVTMSENGAVILKGR--ERYYVNA-IRIREVVDTTGAGDLFASGFLYGYTQ---GRSLEDCGKL-- 322 (352)
T ss_dssp HHHHHHHH-HSSEEEEECGGGCEEEEETT--EEEEECC-CCCSCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH--
T ss_pred HHHHHHhc-CCCEEEEEECCCceEEEECC--EEEEECC-ccCCCCcCCCChHHHHHHHHHHHHHc---CCCHHHHHHH--
Confidence 77777765 78999999999999999876 6899999 7775 899999999999999999999 9999999999
Q ss_pred CCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 301 RGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 301 ~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
|+++| ++|++.|+.++.|..+.+
T Consensus 323 -------A~~aAa~~v~~~G~~~~~~~~~~~ 346 (352)
T 4e3a_A 323 -------GCLAAGIVIQQIGPRPMTSLSEAA 346 (352)
T ss_dssp -------HHHHHHHHTTSSSSSCSSCHHHHH
T ss_pred -------HHHHHHHHHcCCCCCCCcCHHHHH
Confidence 99999 999999999888766554
No 19
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=5.9e-44 Score=343.05 Aligned_cols=300 Identities=18% Similarity=0.211 Sum_probs=242.6
Q ss_pred ccCCCCcEEEECccccceecccCC-CCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHh
Q psy8082 10 NLKDEADIVVVGSCLVEFITYVQT-LPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELR 88 (379)
Q Consensus 10 ~~~~~~~i~viG~~~iD~i~~~~~-~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~ 88 (379)
|.|++++|+|+|++++|++..... .+..........+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|+
T Consensus 1 m~m~~~~v~~iG~~~~D~~~~~~~~~~~~~~~~p~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~ 80 (325)
T 3h49_A 1 MSLDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCR 80 (325)
T ss_dssp ----CEEEEEESCCEEEEEECSCCGGGGGSSCCCCSCCCCEEESHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEChhhheeeccCCCCccccccccchheeEEccCcHHHHHHHHHHHCCCCeEEEEEECCChHHHHHHHHHH
Confidence 346778999999999999643210 0001111122356678999999999999999999999999999999999999999
Q ss_pred hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCC-cCCCCCHHHHHHHHhhccCccEEEEeCC-----CCHHHHHH
Q psy8082 89 KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG-ANTYLSASDIDAAKNLLLKAKVIMFQGE-----TPWETTLY 162 (379)
Q Consensus 89 ~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~-~~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~~~~~~~ 162 (379)
+ .||+++++.+.++.+|+.++++++++|+|+++...+ +...+++++++. +.+++++++|+++. .+.+.+.+
T Consensus 81 ~-~gV~~~~v~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~ 157 (325)
T 3h49_A 81 K-ENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDF--ARFSQAKLLSLASIFNSPLLDGKALTE 157 (325)
T ss_dssp H-HTCBCSSCEEETTSCCCEEEEEECTTSCEEEECCTTSHHHHCCGGGCCG--GGGGGCSEEEEEEETTSTTSCHHHHHH
T ss_pred H-cCCceeeEEecCCCCCceEEEEECCCCceeEEeccCcccccCChhhcCh--hhhccCCEEEEecccCCcccCHHHHHH
Confidence 9 999999998887889999999999999999876653 334566666542 34889999999863 24578889
Q ss_pred HHHHhhhhccCCcEEEEec--CCCCCCC---chhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEE
Q psy8082 163 CLSKLHVSLESRAKIIVNP--SPAVYPL---NPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVII 237 (379)
Q Consensus 163 ~~~~a~~~~~~~~~v~~D~--~~~~~~~---~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~viv 237 (379)
+++.+ ++.+. +++|+ .+..|+. +.++++++|++++|++|++.|+|. ++..++++.|.++|++.|+|
T Consensus 158 ~~~~a---~~~~~-~~~d~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~~g~~~vvv 228 (325)
T 3h49_A 158 IFTQA---KARQM-IICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGK-----ETLDEIADCFLACGVKTVVI 228 (325)
T ss_dssp HHHHH---HHTTC-EEEEEECCCSSCCCHHHHHHHHTTCSEEECBHHHHHHHHTC-----SSHHHHHHHHHTTTCSEEEE
T ss_pred HHHHH---HhcCC-EEEecCCchhhhhHHHHHHHHHhhCCEEecCHHHHHHHhCC-----CCHHHHHHHHHHcCCCEEEE
Confidence 99998 88884 55554 3444432 346789999999999999999997 36778888899999999999
Q ss_pred EecCCceEEEecCCCceEEEccCCCc-CcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHH
Q psy8082 238 TLGGSGVVYATRDNPRLKTITVDHVE-YPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRV 315 (379)
Q Consensus 238 T~G~~G~~~~~~~~~~~~~~~~~~~~-~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v 315 (379)
|+|++|+++++++ +.+++|+ +++ +++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|
T Consensus 229 t~G~~G~~~~~~~--~~~~~~~-~~~~~vvDttGAGDaf~ag~~~~l~~---g~~~~~a~~~---------A~~~aa~~v 293 (325)
T 3h49_A 229 KTGKDGCFIKRGD--MTMKVPA-VAGITAIDTIGAGDNFASGFIAALLE---GKNLRECARF---------ANATAAISV 293 (325)
T ss_dssp ECTTSCEEEEETT--EEEEECC-CSSCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHH
T ss_pred EeCCCCeEEEECC--eEEEecC-cCCCCCcCCCChhHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHH
Confidence 9999999999877 6788998 665 8999999999999999999999 9999999999 99999 999
Q ss_pred hccccCCCCCChhHHHHHHHHh
Q psy8082 316 QLEGKNSSERKSNSAFVSWFKN 337 (379)
Q Consensus 316 ~~~G~~~~~p~~~~~~~~~~~~ 337 (379)
++.|+.+++|+.+++. +++++
T Consensus 294 ~~~G~~~~~p~~~ev~-~~l~~ 314 (325)
T 3h49_A 294 LSVGATTGVKNRKLVE-QLLEE 314 (325)
T ss_dssp TSSSSSSSCSSSHHHH-TC---
T ss_pred cccCCCCCCCCHHHHH-HHHHh
Confidence 9999999999998863 44443
No 20
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=1.2e-44 Score=350.88 Aligned_cols=292 Identities=20% Similarity=0.237 Sum_probs=249.1
Q ss_pred CCCcEEEECccccceecccCC--------------------CCCCCCceecCcEEEecCChHHHHHHHHHHC----CCC-
Q psy8082 13 DEADIVVVGSCLVEFITYVQT--------------------LPKPEETVKGYHFEQRFSGKGANQCVAAAKL----RAS- 67 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~--------------------~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~L----G~~- 67 (379)
+.++|+++|++++|++..++. +|..++..........+||++.|+|+++++| |.+
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~~G~~~ 85 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGKF 85 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGTTHHHHHHTSTTCEEEECCHHHHHHHHHHHTTGGGTTSS
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEecCCHHHHHHHHHHHhcccCCCCe
Confidence 557899999999999999985 4444445555678899999999999999999 998
Q ss_pred eeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhccC
Q psy8082 68 VALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLK 145 (379)
Q Consensus 68 v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~~ 145 (379)
+.++|.+|+|.+|+.+++.|++ .||+++++. .++.+|++++++++ +|+|+++.+.++...+++++++. ..+.+++
T Consensus 86 ~~~ig~vG~D~~g~~~~~~l~~-~GV~~~~~~-~~~~~T~~~~i~~~-~g~r~~~~~~ga~~~~~~~~~~~~~~~~~~~~ 162 (347)
T 3otx_A 86 VTYVGCIADDRYGKVLKEAAEH-EGIVMAVEH-TTKAGSGACAVCIT-GKERTLVADLGAANHLSSEHMRSPAVVRAMDE 162 (347)
T ss_dssp EEEECEECSSHHHHHHHHHHHH-HTCEECCEE-CSSSCEEEEEEEEE-TTEEEEEEEEEGGGGCCHHHHTSHHHHHHHHH
T ss_pred EEEEEEecCChHHHHHHHHHHH-CCCceeccc-CCCCCCeEEEEEEE-CCceeeeechhhhhcCCHHHcCchhhHHHHhh
Confidence 9999999999999999999999 999999985 56778999999888 89999887778888899988863 2345889
Q ss_pred ccEEEEeCC---CCHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCCh
Q psy8082 146 AKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINNE 217 (379)
Q Consensus 146 ~~~v~~~~~---~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~ 217 (379)
++++|+++. .+.+.+.++++.+ +++++++++|++...+ +.+.++++++|++++|++|++.|++....+.
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~l~~~l~~~dil~~N~~Ea~~l~~~~~~~~ 239 (347)
T 3otx_A 163 SRIFYFSGFTLTVDVNHVLQACRKA---REVDGLFMINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDT 239 (347)
T ss_dssp CSEEEEEGGGGGTCHHHHHHHHHHH---HHTTCEEEEECCCHHHHHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHHTCCC
T ss_pred CCEEEEeeeecccCHHHHHHHHHHH---HHhCCEEEeeCchhhhHHHHHHHHHHHHhhCCEEecCHHHHHHHhcccCCCc
Confidence 999999864 4678899999999 9999999999985432 3456889999999999999999987644344
Q ss_pred hhHHHHHHHHH------hcCCCEEEEEecCCceEEEecCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHHhcCC
Q psy8082 218 EDLADCMEKLL------DMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFKAGQK 288 (379)
Q Consensus 218 ~~~~~~~~~l~------~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~~~~~ 288 (379)
+++.++++.|. +.+++.|+||+|++|+++++++ +.+++|+ +++ ++||||||||+|+|||+++|++
T Consensus 240 ~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~--~~~~~~~-~~~~~~~vvDttGAGDaF~ag~l~~l~~--- 313 (347)
T 3otx_A 240 DCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKD--GVETVPV-PQLDQDKVIDMNGAGDAFMGGFLSAYAV--- 313 (347)
T ss_dssp CCHHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEETT--EEEEECC-CCCCGGGCCSSCCSHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEECC--eEEEEEe-cccCCCCCCCCCChHHHHHHHHHHHHHc---
Confidence 57788888888 4799999999999999999876 6788888 666 8999999999999999999999
Q ss_pred CCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCCh
Q psy8082 289 GGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKS 327 (379)
Q Consensus 289 g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~ 327 (379)
|+++++|+++ |+++| ++|++.|+. +|+.
T Consensus 314 g~~l~~a~~~---------a~~~aa~~v~~~G~~--~p~~ 342 (347)
T 3otx_A 314 GKDLRRCCET---------GHYTAQEVIQRDGCS--FPEK 342 (347)
T ss_dssp TCCHHHHHHH---------HHHHHHHHHTCC------CCS
T ss_pred CCCHHHHHHH---------HHHHHHHHHcccCCC--CCCC
Confidence 9999999999 99999 999999964 5654
No 21
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=1.3e-43 Score=338.63 Aligned_cols=287 Identities=18% Similarity=0.273 Sum_probs=243.7
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++. |.+++......+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 1 m~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~~~~l~~-~gv 74 (313)
T 2v78_A 1 MVDVIALGEPLIQFNS-----FNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRA-QGI 74 (313)
T ss_dssp -CCEEEECCCEEEEEE-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHH-TTC
T ss_pred CCeEEEECcceEEEec-----CCCCcccccceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 3589999999999985 3445566777889999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEE--EcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCCC------HHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKV--ISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYC 163 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~--~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~~~ 163 (379)
+++++...++.+|+.+++. ++++|++++..+. ++...+++++++. ..+++++++|+++..+ .+.+.++
T Consensus 75 ~~~~v~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 152 (313)
T 2v78_A 75 DTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINE--NYVRNSRLVHSTGITLAISDNAKEAVIKA 152 (313)
T ss_dssp BCTTEEEETTSCCCEEEEEESSSSTTCEEEEEECTTCSGGGCCGGGCCH--HHHHTSSEEEEEHHHHHHCHHHHHHHHHH
T ss_pred cCceEEEcCCCCceEEEEEEecCCCCCeeEEEeCCcChhHhCChhhCCH--HHhcCCCEEEEcCchhhcChHHHHHHHHH
Confidence 9999988777799999988 8888988876553 5667788877654 2378999999986432 3556667
Q ss_pred HHHhhhhccCCcEEEEecCCC--CCC-------CchhhcccCe--EEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q psy8082 164 LSKLHVSLESRAKIIVNPSPA--VYP-------LNPIVMILAD--IICINEQEAEIITDMKINNEEDLADCMEKLLDMKC 232 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~~--~~~-------~~~~ll~~~d--il~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~ 232 (379)
++.+ ++. ++||... .|. .+.++++++| ++++|++|++.|++. +++.++++.|.++|+
T Consensus 153 ~~~a---~~~----~~D~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~-----~~~~~~~~~l~~~g~ 220 (313)
T 2v78_A 153 FELA---KSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDV-----TDPDEAYRKYKELGV 220 (313)
T ss_dssp HHHC---SSE----EEECCCCGGGSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSC-----CCHHHHHHHHHHTTE
T ss_pred HHHH---HHh----CcCCcCChhhcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCC-----CCHHHHHHHHHhCCC
Confidence 7776 543 8999753 232 3456788999 999999999999986 367788889999999
Q ss_pred CEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH
Q psy8082 233 NTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA 312 (379)
Q Consensus 233 ~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A 312 (379)
+.|+||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++|
T Consensus 221 ~~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaF~ag~~~~l~~---g~~~~~a~~~---------a~~~a 285 (313)
T 2v78_A 221 KVLLYKLGSKGAIAYKDN--VKAFKDA-YKVPVEDPTGAGDAMAGTFVSLYLQ---GKDIEYSLAH---------GIAAS 285 (313)
T ss_dssp EEEEEECGGGCEEEEETT--EEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHH
T ss_pred CEEEEEECCCCcEEeeCC--cEEEeCC-CcCCccCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHH
Confidence 999999999999998765 6889999 8889999999999999999999999 9999999999 99999
Q ss_pred -HHHhccccCCCCCChhHHHHHHHH
Q psy8082 313 -RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 313 -~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
+++++.|+.+++|+.+++. ++++
T Consensus 286 a~~v~~~G~~~~~~~~~~v~-~~~~ 309 (313)
T 2v78_A 286 TLVITVRGDNELTPTLEDAE-RFLN 309 (313)
T ss_dssp HHHHTSSSSSTTCCCHHHHH-HHHH
T ss_pred HHHhccCCCCCCCCCHHHHH-HHHH
Confidence 9999999998899998863 4444
No 22
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.1e-43 Score=339.85 Aligned_cols=299 Identities=16% Similarity=0.238 Sum_probs=245.3
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
+++++|+|+|++++|++......|. .....+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 9 ~~~~~i~viG~~~~D~~~~~~~~~~----~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~~~L~~-~ 83 (332)
T 2qcv_A 9 DREFDLIAIGRACIDLNAVEYNRPM----EETMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYMRG-V 83 (332)
T ss_dssp CCSEEEEEESCCEEEEEESSCSSCG----GGCCCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHH-T
T ss_pred ccCCcEEEECcceEEEecCCCCCCc----cccceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHHHHHHHHHH-c
Confidence 4557899999999999986544432 2345788899999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeC-CcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCC-----CHHHHHHH
Q psy8082 92 SINTKYIWLLQ-DVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYC 163 (379)
Q Consensus 92 gi~~~~i~~~~-~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~~ 163 (379)
||+++++...+ +.+|+.+++.++.+|++++..+. +++..+++++++.. .+++++++|+++.. +.+.+.++
T Consensus 84 gV~~~~v~~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~--~~~~~~~v~~~g~~~~~~~~~~~~~~~ 161 (332)
T 2qcv_A 84 GVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVNEA--YIRRSKLLLVSGTALSKSPSREAVLKA 161 (332)
T ss_dssp TCBCTTEEECSSCCCCCEEEEEEEETTEEEEEEECTTCGGGGCCGGGCCHH--HHTTEEEEEEEGGGGSSTTHHHHHHHH
T ss_pred CCCCcceEecCCCCCceEEEEEEcCCCCccEEEECCcchhhhCCHhHCCHH--HHccCCEEEEeCccccCchhHHHHHHH
Confidence 99999997764 35899988877777887776554 35667888777543 37899999998643 34778888
Q ss_pred HHHhhhhccCCcEEEEecCCC--CCC-------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCE
Q psy8082 164 LSKLHVSLESRAKIIVNPSPA--VYP-------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNT 234 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~~--~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~ 234 (379)
++.+ ++.+.++++||... .|. .+..+++++|++++|++|++.|++.... ++..++++.|+++|++.
T Consensus 162 ~~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~--~~~~~~~~~l~~~g~~~ 236 (332)
T 2qcv_A 162 IRLA---KRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEK--GDNDETIRYLFKHSPEL 236 (332)
T ss_dssp HHHH---HHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSC--CCHHHHHHHHTTSSCSE
T ss_pred HHHH---HHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcC--CCHHHHHHHHHHcCCCE
Confidence 9998 88999999999853 231 2345788999999999999999987431 34567788898999999
Q ss_pred EEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-H
Q psy8082 235 VIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-R 313 (379)
Q Consensus 235 vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~ 313 (379)
|+||+|++|++++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +
T Consensus 237 vvvt~G~~G~~~~~~~~-~~~~~~~-~~v~vvdt~GAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~ 302 (332)
T 2qcv_A 237 IVIKHGVEGSFAYTKAG-EAYRGYA-YKTKVLKTFGAGDSYASAFLYALIS---GKGIETALKY---------GSASASI 302 (332)
T ss_dssp EEEECGGGCEEEEETTS-CEEEECC-BCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHH
T ss_pred EEEEECCcceEEEecCC-ceEEcCC-CCccccCCCCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHH
Confidence 99999999999998733 5788999 8899999999999999999999999 9999999999 99999 9
Q ss_pred HHhccccCCCCCChhHHHHHHHHh
Q psy8082 314 RVQLEGKNSSERKSNSAFVSWFKN 337 (379)
Q Consensus 314 ~v~~~G~~~~~p~~~~~~~~~~~~ 337 (379)
++++.|+.+++|+.+++. ++++.
T Consensus 303 ~v~~~G~~~~~p~~~ev~-~~l~~ 325 (332)
T 2qcv_A 303 VVSKHSSSDAMPSVEEIE-ALIEK 325 (332)
T ss_dssp HHHC-----CCCCHHHHH-HHHHH
T ss_pred HHccCCCccCCCCHHHHH-HHHhc
Confidence 999999998899998874 55543
No 23
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=1.3e-42 Score=332.03 Aligned_cols=288 Identities=16% Similarity=0.275 Sum_probs=241.8
Q ss_pred ccccccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHH
Q psy8082 6 HCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLE 85 (379)
Q Consensus 6 ~~~~~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~ 85 (379)
|.+.-.+++++|+|+|++++|++..++++|.+++.+........+||++.|+|+++++||.++.++|.+|+|.+|+.+++
T Consensus 9 ~~~~~~~~~~~i~viG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~~l~~ 88 (312)
T 2hlz_A 9 HSSGLVPRGSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLD 88 (312)
T ss_dssp --------CCEEEEESCCEEEEEEEESSCCCTTCEEECSEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHH
T ss_pred cccCCCCCCCcEEEECcceEEEeeccccCCCccceeecccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHHHHHH
Confidence 34455577889999999999999999999888888888888899999999999999999999999999999999999999
Q ss_pred HHhhhcCCcccceeeeCCcCceeEEEEEc-CCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHH
Q psy8082 86 ELRKYNSINTKYIWLLQDVTTGVCSKVIS-NKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCL 164 (379)
Q Consensus 86 ~l~~~~gi~~~~i~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 164 (379)
.|++ +||+++++...++.+|++++++++ ++|+|+++.+.++...+++++++.. .+++++++|+++.. .+...+++
T Consensus 89 ~L~~-~GV~~~~v~~~~~~~T~~~~~~v~~~~g~r~~~~~~~~~~~~~~~~~~~~--~l~~~~~v~~~~~~-~~~~~~~~ 164 (312)
T 2hlz_A 89 DLRR-YSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKV--DLTQFKWIHIEGRN-ASEQVKML 164 (312)
T ss_dssp HHHH-TTCBCTTEEECSSCCCCEEEEEEETTTCCEEEEEECCCCCCCCHHHHHTS--CGGGEEEEEEECSS-HHHHHHHH
T ss_pred HHHH-cCCCCccceeccCCCCCeEEEEEECCCCceEEEecCCccccCCHHHhhHh--hhccCCEEEEeccC-HHHHHHHH
Confidence 9999 999999988765667888877775 4799998877777888999888742 47899999999874 46677778
Q ss_pred HHhhhhccC--------CcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--CE
Q psy8082 165 SKLHVSLES--------RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKC--NT 234 (379)
Q Consensus 165 ~~a~~~~~~--------~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~--~~ 234 (379)
+.+ ++. +.++++|+... ++.+.++++++|++++|++|++.+ +. ++..++++.+.++.. +.
T Consensus 165 ~~a---~~~~~~~~~~~~~~v~~d~~~~-~~~~~~~l~~~dil~~n~~ea~~l-g~-----~~~~~~~~~l~~~~~~g~~ 234 (312)
T 2hlz_A 165 QRI---DAHNTRQPPEQKIRVSVEVEKP-REELFQLFGYGDVVFVSKDVAKHL-GF-----QSAEEALRGLYGRVRKGAV 234 (312)
T ss_dssp HHH---HHHHTTSCGGGCCEEEEEECSC-CGGGGGGGGSSSEEEECHHHHHHT-TC-----CSHHHHHHHHGGGSCTTCE
T ss_pred HHH---HHhcccccCCCCeEEEEEcccc-hHHHHHHHhcCCEEEEcHHHHHHc-CC-----CCHHHHHHHHHHhcCCCCE
Confidence 777 554 67899999754 345678999999999999999987 54 356677777776533 89
Q ss_pred EEEEecCCceEEEecCCCceEEEccCCC-cCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-
Q psy8082 235 VIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 235 vivT~G~~G~~~~~~~~~~~~~~~~~~~-~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A- 312 (379)
|+||+|++|++++++++ +.+++|+ ++ ++++|||||||+|+|+|+++|++ |+++++|+++ |+++|
T Consensus 235 vvvt~G~~G~~~~~~~~-~~~~~~~-~~~~~vvdt~GAGDaf~a~~~~~l~~---g~~~~~a~~~---------a~~~aa 300 (312)
T 2hlz_A 235 LVCAWAEEGADALGPDG-KLLHSDA-FPPPRVVDTLGAGDTFNASVIFSLSQ---GRSVQEALRF---------GCQVAG 300 (312)
T ss_dssp EEEECGGGCEEEECTTC-CEEEECC-CCCSSCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHH
T ss_pred EEEEecccCeEEEccCC-CEEECCC-CCCCCcccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHH
Confidence 99999999999987643 5788888 54 58999999999999999999999 9999999999 99999
Q ss_pred HHHhccccC
Q psy8082 313 RRVQLEGKN 321 (379)
Q Consensus 313 ~~v~~~G~~ 321 (379)
++|++.|+.
T Consensus 301 ~~v~~~G~~ 309 (312)
T 2hlz_A 301 KKCGLQGFD 309 (312)
T ss_dssp HHHTSSSSG
T ss_pred HHHhhcCcc
Confidence 999999953
No 24
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=1.3e-42 Score=331.10 Aligned_cols=292 Identities=15% Similarity=0.191 Sum_probs=251.7
Q ss_pred CCcEEEE-CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 14 EADIVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 14 ~~~i~vi-G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
|++|+++ +++++|+++.++++ .+++++++..+...+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++ +|
T Consensus 1 m~~i~~v~~n~~~D~~~~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~-~g 77 (309)
T 3umo_A 1 MVRIYTLTLAPSLDSATITPQI-YPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLAD-EN 77 (309)
T ss_dssp CCCEEEECSSCEEEEEEEESCC-CSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHH-TT
T ss_pred CCcEEEEecchhheEEEEcCcc-cCCCeEEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHH-cC
Confidence 4567777 58999999999998 789999999999999999999999999999999999999999 99999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEc-CCCceeEEecCCcCCCCCHHHHHHHHhh---ccCccEEEEeCCC----CHHHHHHHH
Q psy8082 93 INTKYIWLLQDVTTGVCSKVIS-NKGTHQTNIIPGANTYLSASDIDAAKNL---LLKAKVIMFQGET----PWETTLYCL 164 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~---l~~~~~v~~~~~~----~~~~~~~~~ 164 (379)
|+++++.... +|+.++.+++ ++|++.++.+.++ .+++++++.+.+. +..++++|+++.. +.+.+.+++
T Consensus 78 v~~~~v~~~~--~t~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (309)
T 3umo_A 78 VPVATVEAKD--WTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLI 153 (309)
T ss_dssp CCEEEEECSS--CCCCCEEEEETTTCCEEEEECCCC--CCCHHHHHHHHHHHTTSCTTCEEEEESCCCTTCCHHHHHHHH
T ss_pred CceEEEEecC--CCeeEEEEEECCCCcEEEEEcCCC--CCCHHHHHHHHHHHHhcCCCCEEEEEccCCCCCCHHHHHHHH
Confidence 9999887643 4666655554 4788888766665 4788887654332 4678899998864 467888999
Q ss_pred HHhhhhccCCcEEEEecCCCCCCCchhhccc--CeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-CEEEEEecC
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVYPLNPIVMIL--ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKC-NTVIITLGG 241 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~--~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~-~~vivT~G~ 241 (379)
+.+ ++++.++++||.+. .+.++++. +|++++|++|++.|+|....+.++..++++.|.+++. +.++||+|+
T Consensus 154 ~~a---~~~~~~v~~D~~~~---~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~vvvt~G~ 227 (309)
T 3umo_A 154 SAA---QKQGIRCIVDSSGE---ALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGP 227 (309)
T ss_dssp HHH---HHTTCEEEEECCHH---HHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCEEEECGG
T ss_pred HHH---HhcCCEEEEECCcH---HHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 999 89999999999743 34566776 5999999999999999877667788999999999987 899999999
Q ss_pred CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 242 SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 242 ~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+|+++++++ +.+++|+ ++++++|||||||+|+|+|+++|++ |+++++|+++ |+++| ++|++.|+
T Consensus 228 ~G~~~~~~~--~~~~~~~-~~v~vvdttGAGD~f~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~G~ 292 (309)
T 3umo_A 228 QGALGVDSE--NCIQVVP-PPVKSQSTVGAGDSMVGAMTLKLAE---NASLEEMVRF---------GVAAGSAATLNQGT 292 (309)
T ss_dssp GCEEEECSS--CEEEECC-CSCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHTTSSTT
T ss_pred ccEEEEECC--cEEEEeC-CCcCCCCCcChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCC
Confidence 999999887 5789999 8899999999999999999999999 9999999999 99999 99999998
Q ss_pred CCCCCChhHHHHHHHH
Q psy8082 321 NSSERKSNSAFVSWFK 336 (379)
Q Consensus 321 ~~~~p~~~~~~~~~~~ 336 (379)
. +|+.+++ +++++
T Consensus 293 ~--~~~~~ev-~~~l~ 305 (309)
T 3umo_A 293 R--LCSHDDT-QKIYA 305 (309)
T ss_dssp C--CCCHHHH-HHHHH
T ss_pred C--CCCHHHH-HHHHH
Confidence 5 7898886 45554
No 25
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=3.5e-43 Score=335.11 Aligned_cols=280 Identities=17% Similarity=0.239 Sum_probs=238.7
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++. +.+++.+....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 1 m~~i~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~L~~-~gv 74 (309)
T 1v1a_A 1 MLEVVTAGEPLVALVP-----QEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRA-EGV 74 (309)
T ss_dssp CCSEEEESCCEEEEEC-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHHHHHHH-HTC
T ss_pred CCcEEEEccceEEEec-----CCCCcccchheeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 4589999999999984 3345556677888999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCCC------HHHHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLS 165 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~~~~~ 165 (379)
+++++...++ +|+++++..+++|++++..+. ++...+++++++. ..+++++++|+++..+ .+.+.++++
T Consensus 75 ~~~~v~~~~~-~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 151 (309)
T 1v1a_A 75 DLTHFRRAPG-FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDP--DYLEGVRFLHLSGITPALSPEARAFSLWAME 151 (309)
T ss_dssp BCTTEEECSS-CCCEEEEEECTTSCEEEEEECTTCSGGGCCTTSSCG--GGGTTCSEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CCceEEEcCC-CCEEEEEEECCCCCceEEEeCCCChhhhCCHhhCCh--hHhcCCCEEEEeCchhccCchHHHHHHHHHH
Confidence 9999987777 999999988888988876543 4566677766653 3478999999987543 356778888
Q ss_pred HhhhhccCCcEEEEecCCC--CC------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEE
Q psy8082 166 KLHVSLESRAKIIVNPSPA--VY------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVII 237 (379)
Q Consensus 166 ~a~~~~~~~~~v~~D~~~~--~~------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~viv 237 (379)
.+ ++++.++++||... .| +.+.++++++|++++|++|++.|++.+ +++++ +.|++.|+|
T Consensus 152 ~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-------~~~~~---~~g~~~vvv 218 (309)
T 1v1a_A 152 EA---KRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRV-------EEALR---ALSAPEVVL 218 (309)
T ss_dssp HH---HTTTCEEEEECCCCTTTSCHHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH-------HHHHH---HTCCSEEEE
T ss_pred HH---HHcCCEEEEeCCCCcccCCHHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH-------HHHHH---hcCCCEEEE
Confidence 88 88999999999853 33 234567899999999999999999862 33443 679999999
Q ss_pred EecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 238 TLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 238 T~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
|+|++|+++ ++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++++
T Consensus 219 t~G~~G~~~-~~~~-~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~v~ 283 (309)
T 1v1a_A 219 KRGAKGAWA-FVDG-RRVEGSA-FAVEAVDPVGAGDAFAAGYLAGAVW---GLPVEERLRL---------ANLLGASVAA 283 (309)
T ss_dssp ECGGGCEEE-EETT-EEEECCC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHT
T ss_pred EecCCCeeE-ecCC-cEEEeCC-CCCCcCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHc
Confidence 999999998 6533 6788998 8889999999999999999999999 9999999999 99999 9999
Q ss_pred ccccCCCCCChhHH
Q psy8082 317 LEGKNSSERKSNSA 330 (379)
Q Consensus 317 ~~G~~~~~p~~~~~ 330 (379)
+.|+.+++|+.+++
T Consensus 284 ~~G~~~~~~~~~~v 297 (309)
T 1v1a_A 284 SRGDHEGAPYREDL 297 (309)
T ss_dssp SSTTTTTCCCHHHH
T ss_pred CCCCCcCCCCHHHH
Confidence 99999889998886
No 26
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-44 Score=353.61 Aligned_cols=289 Identities=19% Similarity=0.262 Sum_probs=242.4
Q ss_pred CCCCcEEEECccccceecccCCC------CCCCCce--------------ecCcEEEecCChHHHHHHHHHHC---CCCe
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTL------PKPEETV--------------KGYHFEQRFSGKGANQCVAAAKL---RASV 68 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~------p~~~~~~--------------~~~~~~~~~GG~a~nvA~~l~~L---G~~v 68 (379)
|++.+|+++|++++|++..++.. +.++..+ ........+||++.|+|+++++| |.++
T Consensus 21 ~~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~~~~~~~~GG~~~N~a~~~~~L~~lG~~~ 100 (365)
T 3loo_A 21 LRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTA 100 (365)
T ss_dssp CCTTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHTCTTSE
T ss_pred CCCccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhhcCCCcE
Confidence 44568999999999999999861 2333322 23357789999999999999976 9999
Q ss_pred eEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhccCc
Q psy8082 69 ALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKA 146 (379)
Q Consensus 69 ~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~~~ 146 (379)
.++|.+|+|.+|+.+++.|++ .||+++++.. ++.+|++++++++ +++|+++.+.++...+++++++. ..+.++++
T Consensus 101 ~~ig~vG~D~~g~~~~~~l~~-~GV~~~~~~~-~~~~Tg~~~i~~~-~~~r~~~~~~ga~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T 3loo_A 101 IFFGCVGQDEYARILEERATS-NGVNVQYQRS-ATSPTGTCAVLVT-GTQRSLCANLAAANDFTPEHLRSDGNRAYLQGA 177 (365)
T ss_dssp EEEEEEESBHHHHHHHHHHHH-HTCEEEEEEE-SSSCCEEEEEEEE-TTEEEEEEECGGGGGCCGGGGGSHHHHHHHHHC
T ss_pred EEEEEecCCchHHHHHHHHHH-CCCceecccc-CCCCCeEEEEEEE-CCceEEEeccchHhhCCHhHcCchhhHHHHhhC
Confidence 999999999999999999999 9999999876 6779999999988 78898888888888898887752 23457899
Q ss_pred cEEEEeCCC---CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCChh
Q psy8082 147 KVIMFQGET---PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINNEE 218 (379)
Q Consensus 147 ~~v~~~~~~---~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~ 218 (379)
+++|+++.. +++.+.++++.+ ++.++++++|++...+ +.+.++++++|++++|++|++.|++....+.+
T Consensus 178 ~~v~i~G~~~~~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~l~~~l~~~dil~~N~~Ea~~l~g~~~~~~~ 254 (365)
T 3loo_A 178 QFFYVSGFFFTVSFESALSVAKEA---AATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTE 254 (365)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHHH---HHTTCEEEEECCSTHHHHHCHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCC
T ss_pred CEEEEeeeeccCCHHHHHHHHHHH---HHcCCEEEEECCchhhhHHHHHHHHHHHHhCCEEecCHHHHHHHhcccCCCCC
Confidence 999999743 457788889988 8899999999975432 34567889999999999999999986544456
Q ss_pred hHHHHHHHHHhc------CCCEEEEEecCCceEEE--ecCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHHhcC
Q psy8082 219 DLADCMEKLLDM------KCNTVIITLGGSGVVYA--TRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFKAGQ 287 (379)
Q Consensus 219 ~~~~~~~~l~~~------g~~~vivT~G~~G~~~~--~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~~~~ 287 (379)
++.++++.|.++ +++.|+||+|++|++++ +++ +.+++|+ +++ ++||||||||+|+|||+++|++
T Consensus 255 ~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~--~~~~~~~-~~v~~~~vvDttGAGDaF~agfl~~l~~-- 329 (365)
T 3loo_A 255 DLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTD--NVREFPV-QKLAPEQMVDTNGAGDAFVGGFLAQLLQ-- 329 (365)
T ss_dssp CHHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCS--CCEEECC-CCCC------CTTHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCC--eEEEEec-cccCCCCccCCCChHHHHHHHHHHHHHC--
Confidence 788889999875 89999999999999999 444 6788998 776 8999999999999999999999
Q ss_pred CCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 288 KGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 288 ~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
|+++++|+++ |+++| ++|++.|+.
T Consensus 330 -g~~l~~a~~~---------a~~~Aa~~v~~~G~~ 354 (365)
T 3loo_A 330 -SRTVDVCIKC---------GIWAAREIIQRSGCT 354 (365)
T ss_dssp -TCCHHHHHHH---------HHHHHHHHHHHGGGG
T ss_pred -CCCHHHHHHH---------HHHHHHHHHcCCCCC
Confidence 9999999999 99999 999999986
No 27
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=2e-43 Score=340.72 Aligned_cols=293 Identities=17% Similarity=0.173 Sum_probs=247.8
Q ss_pred CcEEEECccccceeccc----------CCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHH
Q psy8082 15 ADIVVVGSCLVEFITYV----------QTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYL 84 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~----------~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~ 84 (379)
++|+|+|++++|++..+ +++|..++...+..+...+||++.|+|.++++||.++.++|.+|+| +|+ ++
T Consensus 11 m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~g~-i~ 88 (334)
T 2pkf_A 11 MTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVLGGEVALVGAAGAD-FAD-YR 88 (334)
T ss_dssp SEEEEESCCEEEEEEECSSCTHHHHTTSCGGGCCCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECGG-GHH-HH
T ss_pred CeEEEECChhheEEEecChHHhhhhchhhccccccccccccceecCCChHHHHHHHHHHcCCCeEEEEEEeCc-hHH-HH
Confidence 58999999999999988 7777777777777889999999999999999999999999999999 899 99
Q ss_pred HHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHH
Q psy8082 85 EELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCL 164 (379)
Q Consensus 85 ~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 164 (379)
+.|++ .||+++++...++.+|+.+++.++++|++.+..++++...++++++......+++++++|+++.. ++...+++
T Consensus 89 ~~L~~-~gV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~~~~~ 166 (334)
T 2pkf_A 89 DWLKA-RGVNCDHVLISETAHTARFTCTTDVDMAQIASFYPGAMSEARNIKLADVVSAIGKPELVIIGAND-PEAMFLHT 166 (334)
T ss_dssp HHHHT-TTEECTTCEECSSCCCEEEEEEECTTCCEEEEEECGGGGGGGGCCHHHHHHHHCSCSEEEEESCC-HHHHHHHH
T ss_pred HHHHH-CCCceeeeEecCCCCceEEEEEEcCCCCEEEEECCchhhhCCHhhcChhhhhhcCCCEEEEcCCC-hHHHHHHH
Confidence 99999 99999999877778999999999988988886667766667666666543336899999999875 57788888
Q ss_pred HHhhhhccCCcEEEEecCCCC--C--CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEec
Q psy8082 165 SKLHVSLESRAKIIVNPSPAV--Y--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~--~--~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G 240 (379)
+.+ ++.+.++++||.... | +.+.++++++|++++|++|++.|++....+ . +.+.+. ++.|+||+|
T Consensus 167 ~~a---~~~g~~v~~D~~~~~~~~~~~~l~~~l~~~dil~~N~~E~~~l~g~~~~~---~----~~l~~~-~~~vvvt~G 235 (334)
T 2pkf_A 167 EEC---RKLGLAFAADPSQQLARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWS---E----ADVMAQ-IDLRVTTLG 235 (334)
T ss_dssp HHH---HHHTCCEEEECGGGGGTSCHHHHHTTTTTCSEEEEEHHHHHHHHHHHCCC---H----HHHHTT-CSCEEEECG
T ss_pred HHH---HhcCCeEEEeccchhhhhhHHHHHHHHhcCCEEecCHHHHHHHhccCCCC---H----HHHHhc-CCEEEEEeC
Confidence 888 888999999997532 2 234578899999999999999998753222 1 124444 889999999
Q ss_pred CCceEEEecCCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 241 GSGVVYATRDNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 241 ~~G~~~~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
++|++++++++ +.+++|+ ++++ ++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.
T Consensus 236 ~~G~~~~~~~~-~~~~~~~-~~v~~vvDttGAGDaF~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~ 301 (334)
T 2pkf_A 236 PKGVDLVEPDG-TTIHVGV-VPETSQTDPTGVGDAFRAGFLTGRSA---GLGLERSAQL---------GSLVAVLVLEST 301 (334)
T ss_dssp GGCEEEECTTS-CEEEECC-CCCSCCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSS
T ss_pred CCCeEEEeCCC-cEEEeCC-cCCCCCCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhCC
Confidence 99999988762 2788998 7776 789999999999999999999 9999999999 99999 999999
Q ss_pred ccCCCCCChhHHHHHHHH
Q psy8082 319 GKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 319 G~~~~~p~~~~~~~~~~~ 336 (379)
|+..++|+.+++...+.+
T Consensus 302 G~~~~~p~~~ev~~~l~~ 319 (334)
T 2pkf_A 302 GTQEWQWDYEAAASRLAG 319 (334)
T ss_dssp SSSCCCCCHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHH
Confidence 999989999887544433
No 28
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=3.3e-43 Score=335.45 Aligned_cols=286 Identities=17% Similarity=0.241 Sum_probs=243.6
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++. |.+++......+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 1 m~~v~viG~~~~D~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~~~l~~-~gv 74 (311)
T 2dcn_A 1 MAKLITLGEILIEFNA-----LSPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRG-QGV 74 (311)
T ss_dssp -CEEEEESCCEEEEEE-----SSSSCGGGCCEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHHHHHHH-TTC
T ss_pred CCCEEEECCceEEEec-----CCCCcccccceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 4689999999999986 3455666777888999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCc--eeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCCC------CHHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGT--HQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET------PWETTLYC 163 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~--~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~------~~~~~~~~ 163 (379)
+++++...++.+|+.+++.++++|+ |++..+. ++...+++++++. ..+++++++|+++.. +.+.+.++
T Consensus 75 ~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 152 (311)
T 2dcn_A 75 DVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDE--EYVKSADLVHSSGITLAISSTAKEAVYKA 152 (311)
T ss_dssp BCTTCEEETTSCCCEEEEEESCSSTTCEEEEEECTTCTGGGCCGGGCCH--HHHTTCSEEEEEHHHHHSCHHHHHHHHHH
T ss_pred CcceEEEcCCCCceEEEEEECCCCCccceEEEecCcChhhhCChhhcCh--HHHcCCCEEEEeCcccccChHHHHHHHHH
Confidence 9999988777899999999988898 8876553 5667788877654 237899999998643 23566777
Q ss_pred HHHhhhhccCCcEEEEecCCC--CCC------Cchhhcc--cCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCC
Q psy8082 164 LSKLHVSLESRAKIIVNPSPA--VYP------LNPIVMI--LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCN 233 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~~~--~~~------~~~~ll~--~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~ 233 (379)
++.+ ++. ++||+.. .|. .+.++++ ++|++++|++|++.|++. +++.++++.|.++ ++
T Consensus 153 ~~~a---~~~----~~D~~~~~~~~~~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~~-~~ 219 (311)
T 2dcn_A 153 FEIA---SNR----SFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILGE-----SDPDKAAKAFSDY-AE 219 (311)
T ss_dssp HHHC---SSE----EEECCCCTTTSCHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSC-----CCHHHHHHHHTTT-EE
T ss_pred HHHH---HHh----CcCccCchhhCChHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCC-----CCHHHHHHHHHHh-CC
Confidence 7777 544 8999752 332 3456888 999999999999999987 3677888889888 99
Q ss_pred EEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-
Q psy8082 234 TVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 234 ~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A- 312 (379)
.|+||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++|
T Consensus 220 ~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------a~~~aa 284 (311)
T 2dcn_A 220 IIVMKLGPKGAIVYYDG--KKYYSSG-YQVPVEDVTGAGDALGGTFLSLYYK---GFEMEKALDY---------AIVAST 284 (311)
T ss_dssp EEEEEEETTEEEEEETT--EEEEEEC-CCCCCSCCTTHHHHHHHHHHHHHTT---TCCHHHHHHH---------HHHHHH
T ss_pred EEEEEECCCCcEEEeCC--cEEEeCC-ccccccCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHH
Confidence 99999999999999866 6888999 8889999999999999999999999 9999999999 99999
Q ss_pred HHHhccccCCCCCChhHHHHHHHH
Q psy8082 313 RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 313 ~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
+++++.|+.+++|+.+++. ++++
T Consensus 285 ~~v~~~G~~~~~~~~~~v~-~~~~ 307 (311)
T 2dcn_A 285 LNVMIRGDQENLPTTKDIE-TFLR 307 (311)
T ss_dssp HHTTSSSSSTTCCCHHHHH-HHHH
T ss_pred HHhccCCCCCCCCCHHHHH-HHHH
Confidence 9999999998899998864 4444
No 29
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=5.1e-43 Score=340.33 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=241.1
Q ss_pred CCCCcEEEECccccceecc--cCCC-C-CCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHH
Q psy8082 12 KDEADIVVVGSCLVEFITY--VQTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEEL 87 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~--~~~~-p-~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l 87 (379)
+++++|+|+|++++|.+.. ++++ | .|.....+..+...+||+ +|+|+++++||.++.++|.+|+|.+|+.+++.|
T Consensus 51 ~~~~~ilvvG~~~~D~~~~g~v~r~~p~~p~~~~~~~~~~~~~GG~-~NvA~~la~LG~~v~~ig~vG~D~~G~~i~~~L 129 (352)
T 4e84_A 51 LARSRVLVVGDVMLDRYWFGNVDRISPEAPVPVVHVQRQEERLGGA-ANVARNAVTLGGQAGLLCVVGCDEPGERIVELL 129 (352)
T ss_dssp HTTCEEEEEECEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEEH-HHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCCcEEEECccceEEEEeecccccCCCCCcceEEeeEEEEecChH-HHHHHHHHHcCCCEEEEEEeCCChhHHHHHHHH
Confidence 5678999999999999876 4443 1 133356677888999998 899999999999999999999999999999999
Q ss_pred hhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecC-CcCCCCCHHHHHHHHhhccCccEEEEeC--CCCHHHHHHHH
Q psy8082 88 RKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAKNLLLKAKVIMFQG--ETPWETTLYCL 164 (379)
Q Consensus 88 ~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~l~~~~~~l~~~~~v~~~~--~~~~~~~~~~~ 164 (379)
++ .||++. +...++.+|+.+++.++.++++..+.+. ++.....++.++...+.++++|++|+++ +.+.+...+++
T Consensus 130 ~~-~GV~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~ 207 (352)
T 4e84_A 130 GS-SGVTPH-LERDPALPTTIKLRVLARQQQLLRVDFEAMPTHEVLLAGLARFDVLLPQHDVVLMSDYAKGGLTHVTTMI 207 (352)
T ss_dssp TT-TSCEEE-EEEETTSCCCEEEEEEESSCEEEEEEECCCCCHHHHHHHHHHHHHHGGGCSEEEEECCSSSSCSSHHHHH
T ss_pred HH-cCCcee-eEECCCCCCceEEEEEcCCceEEEEEcCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCHHHHHHHH
Confidence 99 999995 5456677899999888876655433332 3322233333444445689999999984 33344578888
Q ss_pred HHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCCEEEEEecCCc
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLGGSG 243 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vivT~G~~G 243 (379)
+.+ ++.+.++++||++..+ .+++.+|++++|++|++.|++ ...+.+++.++++.|.+ .|++.|+||+|++|
T Consensus 208 ~~a---~~~g~~v~~D~~~~~~----~~l~~~dil~pN~~Ea~~l~g-~~~~~~~~~~~a~~l~~~~g~~~VvvT~G~~G 279 (352)
T 4e84_A 208 EKA---RAAGKAVLVDPKGDDW----ARYRGASLITPNRAELREVVG-QWKSEDDLRARVANLRAELDIDALLLTRSEEG 279 (352)
T ss_dssp HHH---HHTTCEEEEECCSSCC----STTTTCSEECCBHHHHHHHHC-CCSSHHHHHHHHHHHHHHHTCSEEEEECGGGC
T ss_pred HHH---HhcCCEEEEECCCcch----hhccCCcEEcCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHhCCCEEEEEcCCCc
Confidence 999 9999999999987544 578899999999999999999 45566788888888886 69999999999999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCC
Q psy8082 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNS 322 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~ 322 (379)
+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.|+.+
T Consensus 280 a~~~~~~--~~~~~pa-~~v~vvDttGAGDaF~ag~l~~l~~---g~~l~~al~~---------A~aaaa~~v~~~Ga~~ 344 (352)
T 4e84_A 280 MTLFSAG--GELHAPA-LAREVFDVSGAGDTVIATVATMLGA---GVPLVDAVVL---------ANRAAGIVVGKLGTAT 344 (352)
T ss_dssp EEEEETT--EEEEECC-CCSCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSSCC
T ss_pred EEEEECC--ceEEecC-CCcCccCCccccHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCCCCcc
Confidence 9999876 6899999 8899999999999999999999999 9999999999 99999 9999999875
Q ss_pred CCCChhHH
Q psy8082 323 SERKSNSA 330 (379)
Q Consensus 323 ~~p~~~~~ 330 (379)
|+.+|+
T Consensus 345 --~t~~el 350 (352)
T 4e84_A 345 --VDYDEL 350 (352)
T ss_dssp --CCHHHH
T ss_pred --CCHHHh
Confidence 577765
No 30
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=1.6e-43 Score=339.00 Aligned_cols=273 Identities=17% Similarity=0.269 Sum_probs=231.3
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCC----CCeeEEEEecCChhHHHHHHHHhhh
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLR----ASVALISKLGNDKFGKSYLEELRKY 90 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG----~~v~lvs~vG~D~~g~~i~~~l~~~ 90 (379)
++|+|+|++++|++... ..+...+||+++|+|+++++|| .++.++|.+|+|.+|+.+++.|++
T Consensus 5 ~~i~viG~~~~D~~~~~------------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G~~l~~~L~~- 71 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG------------ADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHG- 71 (319)
T ss_dssp EEEEEESCCEEEEEC---------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHHHHHHHHHHT-
T ss_pred CceeeechhhhhhccCC------------CceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHHHHHHHHHHH-
Confidence 58999999999997421 2567789999999999999999 899999999999999999999999
Q ss_pred cCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCc---CCCCCHHHHHHHHhhccCccEEEEeCCC-------CHHHH
Q psy8082 91 NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGA---NTYLSASDIDAAKNLLLKAKVIMFQGET-------PWETT 160 (379)
Q Consensus 91 ~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~---~~~l~~~~l~~~~~~l~~~~~v~~~~~~-------~~~~~ 160 (379)
+||+++++...++.+|+.+++.++++|+|+++.+++. ...+++++++...+.++++|++|+++.. +.+.+
T Consensus 72 ~GV~~~~v~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~l~~~~~~~~ 151 (319)
T 3lhx_A 72 ENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAILSPTSREKL 151 (319)
T ss_dssp TTEECTTCEECTTCCCCEEEEEC----CCEEEEECTTCGGGGTTSSSSHHHHHHHHTTCSEEEEEHHHHHTSCHHHHHHH
T ss_pred cCCCcceEEEcCCCCceEEEEEeCCCCCeeEEEecCCCHHHhccCccchhhHHHHhcCCCEEEEcCchhhhcCchhHHHH
Confidence 9999999988877899999999988999998877653 3456766666555668999999998632 23677
Q ss_pred HHHHHHhhhhccCCcEEEEecCCC--CC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q psy8082 161 LYCLSKLHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK 231 (379)
Q Consensus 161 ~~~~~~a~~~~~~~~~v~~D~~~~--~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g 231 (379)
.++++.+ ++.+.++++||... .| +.+..+++++|++++|++|++.|+|. ++..++++.|.++|
T Consensus 152 ~~~~~~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~-----~~~~~~~~~l~~~g 223 (319)
T 3lhx_A 152 LSLLREC---RAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQ-----QPVEDVIARTHNAG 223 (319)
T ss_dssp HHHHHHH---HHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCC-----CCHHHHHHHHHHTT
T ss_pred HHHHHHH---HhcCCEEEEeCcCCcccccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCC-----CCHHHHHHHHHhcC
Confidence 8889998 88999999999743 22 13457889999999999999999997 47788889999999
Q ss_pred CCEEEEEecCCceEEEecCCCceEEEccCC---CcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHH
Q psy8082 232 CNTVIITLGGSGVVYATRDNPRLKTITVDH---VEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQ 308 (379)
Q Consensus 232 ~~~vivT~G~~G~~~~~~~~~~~~~~~~~~---~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A 308 (379)
++.|+||.|++|++++++++ ..+++|+ + +++++|||||||+|+|||+++|++ |+++++|+++ |
T Consensus 224 ~~~vvvt~G~~G~~~~~~~~-~~~~~~~-~~~~~~~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A 289 (319)
T 3lhx_A 224 VKEVVVKRGADSCLVSIAGE-ALVDVPA-VKLPKEKVIDTTAAGDSFSAGYLAVRLT---GGSAENAAKR---------G 289 (319)
T ss_dssp CSEEEEEETTEEEEEEETTS-CCEEECC-CCCCGGGCCCCTTHHHHHHHHHHHHHTT---TCCHHHHHHH---------H
T ss_pred CCEEEEEECCCCeEEEECCc-ceEEccc-ccCCCCccCCCCCccHHHHHHHHHHHHc---CCCHHHHHHH---------H
Confidence 99999999999999998874 3458888 5 568999999999999999999999 9999999999 9
Q ss_pred HHHH-HHHhccccCC
Q psy8082 309 CLVA-RRVQLEGKNS 322 (379)
Q Consensus 309 ~~~A-~~v~~~G~~~ 322 (379)
+++| +++++.|+..
T Consensus 290 ~~~aa~~v~~~Ga~~ 304 (319)
T 3lhx_A 290 HLTASTVIQYRGAII 304 (319)
T ss_dssp HHHHHHHTTSSSSSC
T ss_pred HHHHHhhhccCCCcC
Confidence 9999 9999999863
No 31
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=2.1e-42 Score=333.01 Aligned_cols=292 Identities=14% Similarity=0.155 Sum_probs=248.2
Q ss_pred CCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g 92 (379)
.+|.++|+|++++|++..++++ .+++++++..+...+||+++|+|+++++||.++.++|.+|+ .+|+.+++.|++ +|
T Consensus 19 ~~Mi~~v~G~~~~D~~~~~~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~~l~~~L~~-~g 95 (330)
T 2jg1_A 19 SHMILTLTLNPSVDISYPLTAL-KLDDVNRVQEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQFIAKKLDH-AD 95 (330)
T ss_dssp SCCEEEEESSCEEEEEEEESCC-CTTSEEEESCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHH-TT
T ss_pred CcEEEEEecchhheEEEecCCc-cCCceEEeceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHHHHHHHHHH-CC
Confidence 3456778999999999999987 78888888899999999999999999999999999999996 699999999999 99
Q ss_pred CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH----hhccCccEEEEeCCCC----HHHHHHHH
Q psy8082 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGETP----WETTLYCL 164 (379)
Q Consensus 93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~----~~l~~~~~v~~~~~~~----~~~~~~~~ 164 (379)
|+++++...+ .|++++.+++++ ++.++...++ .+++++++... +.++++|++|+++..+ .+.+.+++
T Consensus 96 V~~~~v~~~~--~t~~~~~~v~~~-~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 170 (330)
T 2jg1_A 96 IKHAFYNIKG--ETRNCIAILHEG-QQTEILEQGP--EIDNQEAAGFIKHFEQMMEKVEAVAISGSLPKGLNQDYYAQII 170 (330)
T ss_dssp CEECCEEESS--CCEEEEEEEETT-EEEEEEECCC--BCCHHHHHHHHHHHHHHGGGCSEEEEESCCCBTSCTTHHHHHH
T ss_pred CceeEEEccC--CCeeEEEEEeCC-CcEEEECCCC--CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHH
Confidence 9999987653 478888777765 6655443443 57877776532 3368999999987654 46788899
Q ss_pred HHhhhhccCCcEEEEecCCCCCCCchhhcc---cCeEEEeCHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCCEEEEEec
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVYPLNPIVMI---LADIICINEQEAEIITDMKIN-NEEDLADCMEKLLDMKCNTVIITLG 240 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~---~~dil~~N~~E~~~l~~~~~~-~~~~~~~~~~~l~~~g~~~vivT~G 240 (379)
+.+ ++++.++++||.+. .+.++++ ++|++++|++|++.|++.... +.+++.++++.|.++|++.|+||+|
T Consensus 171 ~~a---~~~g~~v~~D~~~~---~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~l~~~g~~~VvvT~G 244 (330)
T 2jg1_A 171 ERC---QNKGVPVILDCSGA---TLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLG 244 (330)
T ss_dssp HHH---HTTTCCEEEECCHH---HHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHHHHHHHHSGGGTTCSEEEEECG
T ss_pred HHH---HHCCCEEEEECCcH---HHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEeec
Confidence 999 99999999999753 3455665 899999999999999987544 5567888888898999999999999
Q ss_pred CCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccc
Q psy8082 241 GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEG 319 (379)
Q Consensus 241 ~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G 319 (379)
++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.|
T Consensus 245 ~~Ga~~~~~~--~~~~~~~-~~v~vvDttGAGDaF~ag~~~~l~~---g~~l~~al~~---------A~a~aa~~v~~~G 309 (330)
T 2jg1_A 245 AQGAFAKHNH--TFYRVNI-PTISVLNPVGSGDSTVAGITSAILN---HENDHDLLKK---------ANTLGMLNAQEAQ 309 (330)
T ss_dssp GGCEEEEETT--EEEEEEC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSS
T ss_pred CCceEEEeCC--CEEEEeC-CCccccCCCcHHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCcC
Confidence 9999999876 5788999 8899999999999999999999999 9999999999 99999 9999999
Q ss_pred cCCCCCChhHHHHHHHH
Q psy8082 320 KNSSERKSNSAFVSWFK 336 (379)
Q Consensus 320 ~~~~~p~~~~~~~~~~~ 336 (379)
+. .|+.+++. ++++
T Consensus 310 ~~--~~~~~ev~-~~~~ 323 (330)
T 2jg1_A 310 TG--YVNLNNYD-DLFN 323 (330)
T ss_dssp SS--CCCGGGHH-HHHT
T ss_pred CC--CCCHHHHH-HHHh
Confidence 84 78888863 4444
No 32
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=4.6e-42 Score=327.28 Aligned_cols=290 Identities=16% Similarity=0.203 Sum_probs=241.3
Q ss_pred CcEEEE-CccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 15 ADIVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 15 ~~i~vi-G~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
++|+++ |++++|+++.+++ |.+++.++.......+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++ +||
T Consensus 2 ~~I~~v~g~~~~D~~~~~~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~-~gv 78 (309)
T 3cqd_A 2 VRIYTLTLAPSLDSATITPQ-IYPEGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSLLAD-ENV 78 (309)
T ss_dssp CCEEEECSSCEEEEEEEESC-CCSSSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHHHHH-TTC
T ss_pred ceEEEEeccchheEEEEcCC-CcCCCeeeccceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHH-cCC
Confidence 457755 6999999999998 5788899998999999999999999999999999999999998 99999999999 999
Q ss_pred cccceeeeCCcCceeEEEE-EcCCCceeEEecCCcCCCCCHHHHHHHH----hhccCccEEEEeCCCC----HHHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKV-ISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGETP----WETTLYCL 164 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~l~~~~----~~l~~~~~v~~~~~~~----~~~~~~~~ 164 (379)
+++++...+ .|++++.+ ++++|++.++...++ .+++++++.+. +.+++ +++|+++..+ .+.+.+++
T Consensus 79 ~~~~v~~~~--~t~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~~ 153 (309)
T 3cqd_A 79 PVATVEAKD--WTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESG-AILVISGSLPPGVKLEKLTQLI 153 (309)
T ss_dssp CEEEEECSS--CCCCCEEEEETTTCCEEEEECCCC--CCCHHHHHHHHHHHHTSCTT-CEEEEESCCCTTCCHHHHHHHH
T ss_pred CceeEEcCC--CCeeEEEEEEcCCCCEEEEEcCCC--CCCHHHHHHHHHHHHHhhcC-CEEEEECCCCCCCCHHHHHHHH
Confidence 999887553 36666666 788888866554443 47777765432 34677 9999998654 57888899
Q ss_pred HHhhhhccCCcEEEEecCCCCCCCchh-hcccC-eEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcC-CCEEEEEecC
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVYPLNPI-VMILA-DIICINEQEAEIITDMKINNEEDLADCMEKLLDMK-CNTVIITLGG 241 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~~~~~~-ll~~~-dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g-~~~vivT~G~ 241 (379)
+.+ ++.+.++++||.+.. ..+ +.+.+ |++++|++|++.|++....+.+++.++++.|.++| ++.++||+|+
T Consensus 154 ~~a---~~~g~~v~~D~~~~~---~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~~vvvt~G~ 227 (309)
T 3cqd_A 154 SAA---QKQGIRCIVDSSGEA---LSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGP 227 (309)
T ss_dssp HHH---HTTTCEEEEECCHHH---HHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTHHHHHHHHHHHTTSBSCEEEECGG
T ss_pred HHH---HHcCCeEEEECChHH---HHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999 899999999997431 233 34778 99999999999999986666678888999999999 9999999999
Q ss_pred CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 242 SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 242 ~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+
T Consensus 228 ~G~~~~~~~--~~~~~~~-~~v~~vdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~~~~~G~ 292 (309)
T 3cqd_A 228 QGALGVDSE--NCIQVVP-PPVKSQSTVGAGDSMVGAMTLKLAE---NASLEEMVRF---------GVAAGSAATLNQGT 292 (309)
T ss_dssp GCEEEECSS--CEEEECC-CSCCCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHTC----
T ss_pred CceEEEECC--ceEEEeC-CccccCCCcCcHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCcCC
Confidence 999998876 5788998 8889999999999999999999999 9999999999 99999 99999998
Q ss_pred CCCCCChhHHHHHHHH
Q psy8082 321 NSSERKSNSAFVSWFK 336 (379)
Q Consensus 321 ~~~~p~~~~~~~~~~~ 336 (379)
. .|+.+++. ++++
T Consensus 293 ~--~~~~~~v~-~~~~ 305 (309)
T 3cqd_A 293 R--LCSHDDTQ-KIYA 305 (309)
T ss_dssp ---CCCHHHHH-HHHH
T ss_pred C--CCCHHHHH-HHHH
Confidence 5 68888764 4443
No 33
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=1.6e-42 Score=333.65 Aligned_cols=275 Identities=17% Similarity=0.232 Sum_probs=236.5
Q ss_pred cCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHC--CCCeeEEEEecCChhHHHHHHHHh
Q psy8082 11 LKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL--RASVALISKLGNDKFGKSYLEELR 88 (379)
Q Consensus 11 ~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~L--G~~v~lvs~vG~D~~g~~i~~~l~ 88 (379)
.++|++|+|+|++++|++.. +++ ..+...+||+++|+|+++++| |.++.++|.+|+|.+|+.+++.|+
T Consensus 20 ~~~m~~i~viG~~~iD~~~~------~~~----~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG~D~~G~~l~~~L~ 89 (328)
T 4e69_A 20 FQSMMHILSIGECMAELAPA------DLP----GTYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDALSQQMRAAMS 89 (328)
T ss_dssp CBSSCEEEEESCCEEEEEEC------SST----TEEEEEEECHHHHHHHHHHHHCTTSEEEEECEECSSHHHHHHHHHHH
T ss_pred cccCCcEEEecCcEEEEecC------CCC----CceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 35678999999999999863 122 477888999999999999999 899999999999999999999999
Q ss_pred hhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcC---CCCCHHHHHHHHhhccCccEEEEeCC-------CCHH
Q psy8082 89 KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGAN---TYLSASDIDAAKNLLLKAKVIMFQGE-------TPWE 158 (379)
Q Consensus 89 ~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~---~~l~~~~l~~~~~~l~~~~~v~~~~~-------~~~~ 158 (379)
+ +||+++++.+.++.+|+.+++.++ +|+|+++.+.++. ..++..++.. +.++++|++|+++. .+.+
T Consensus 90 ~-~GV~~~~v~~~~~~~T~~~~v~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~ 165 (328)
T 4e69_A 90 A-AGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALA--AAMARADVVYFSGITLAILDQCGRA 165 (328)
T ss_dssp H-TTEECTTCEECTTCCCEEEEEEEE-TTEEEEEEECTTCGGGGTTSCHHHHH--HHHTTCSEEEEEHHHHHTSCHHHHH
T ss_pred H-cCCccceEEEcCCCCCeEEEEEec-CCceEEEEeCCCCHHHhhcCccccch--HHhcCCCEEEECCchhhccCchHHH
Confidence 9 999999998877788999999999 8999987766542 2344444443 44889999999863 2346
Q ss_pred HHHHHHHHhhhhccCCcEEEEecCC--CCC-------CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh
Q psy8082 159 TTLYCLSKLHVSLESRAKIIVNPSP--AVY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD 229 (379)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~v~~D~~~--~~~-------~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~ 229 (379)
.+.++++.+ ++.+.++++||.. ..| +.+.++++++|++++|++|++.|+|. ++..++++.|.+
T Consensus 166 ~~~~~~~~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~ 237 (328)
T 4e69_A 166 TLLRALAQA---RATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGD-----AGPDATADRYAR 237 (328)
T ss_dssp HHHHHHHHH---HHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTC-----SSHHHHHHHHHT
T ss_pred HHHHHHHHH---HhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCC-----CCHHHHHHHHHh
Confidence 677888888 8899999999963 333 23557889999999999999999997 377888999999
Q ss_pred cCCCEEEEEecCCceEEEecCCCceEEEccCCC-cCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHH
Q psy8082 230 MKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQ 308 (379)
Q Consensus 230 ~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~-~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A 308 (379)
+|++.|+||.|++|+++++++ +.+++|+ ++ .+++|||||||+|+|+|+++|++ |+++++|+++ |
T Consensus 238 ~g~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~~~~vvdttGAGDaf~a~~~~~l~~---g~~l~~a~~~---------A 302 (328)
T 4e69_A 238 AGVRSVVVKNGPHAVHFLQDG--RRGRVPV-PPVAQVVDTTAAGDSFNAGLLDSVLA---GQPLETAIAA---------A 302 (328)
T ss_dssp TTCSEEEEBCTTSCEEEEETT--EEEEECC-CCCCSCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------H
T ss_pred cCCCEEEEEeCCCCeEEEeCC--ceEEecC-CCCCCccCCCChhHHHHHHHHHHHHC---CCCHHHHHHH---------H
Confidence 999999999999999999876 6889998 65 79999999999999999999999 9999999999 9
Q ss_pred HHHH-HHHhccccCC
Q psy8082 309 CLVA-RRVQLEGKNS 322 (379)
Q Consensus 309 ~~~A-~~v~~~G~~~ 322 (379)
+++| ++|++.|+.+
T Consensus 303 ~~~aa~~v~~~Ga~~ 317 (328)
T 4e69_A 303 AALAGQVVQGKGALV 317 (328)
T ss_dssp HHHHHHHHTSSSSSC
T ss_pred HHHHHHHHccCCCcC
Confidence 9999 9999999864
No 34
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=1e-43 Score=343.60 Aligned_cols=285 Identities=20% Similarity=0.288 Sum_probs=234.3
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
|+|++|+|+|++++|++... ...+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +
T Consensus 22 ~~m~~ilviG~~~~D~~~~~-----------~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i~~~L~~-~ 89 (339)
T 1tyy_A 22 KAMNKVWVIGDASVDLVPEK-----------QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQD-N 89 (339)
T ss_dssp ---CCEEEESCCEEEEEECS-----------SSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHT-T
T ss_pred cccCCEEEECcceeEEeccC-----------CCceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHHHHHHHHHH-c
Confidence 44568999999999998642 33667789999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecC--CcCCCCCHHHHHHHHhhccCccEEEEeCC-----CCHHHHHHHH
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGE-----TPWETTLYCL 164 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~ 164 (379)
||+++++.+.++.+|+.+++.++++|+|++..+. +++..++++. .+.+++++++|+++. .+.+.+.+++
T Consensus 90 gVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~----~~~l~~~~~v~~~~~~l~~~~~~~~~~~~~ 165 (339)
T 1tyy_A 90 GVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQD----LPPFRQYEWFYFSSIGLTDRPAREACLEGA 165 (339)
T ss_dssp TEECTTEEECTTSCCCEEEEC-------CEEECCSSCGGGGCCGGG----CCCCCTTCEEEEEHHHHSSHHHHHHHHHHH
T ss_pred CCCchheEecCCCCCeEEEEEEcCCCCeEEEEecCCChhhhCCcch----hhHhccCCEEEEcchhhcCcccHHHHHHHH
Confidence 9999999887788999999888888998876544 5666666552 234789999999753 2346777888
Q ss_pred HHhhhhccCCcEEEEecCCC--CCC-------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEE
Q psy8082 165 SKLHVSLESRAKIIVNPSPA--VYP-------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTV 235 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~--~~~-------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~v 235 (379)
+.+ ++.+.++++||... .|. .+.++++++|++++|++|++.|++.. ++.++++.|.+.|++.|
T Consensus 166 ~~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~V 237 (339)
T 1tyy_A 166 RRM---REAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGAS-----HWQDARYYLRDLGCDTT 237 (339)
T ss_dssp HHH---HHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCS-----SGGGGSSTTGGGTCSCE
T ss_pred HHH---HHcCCEEEEeCCCCccccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCC-----CHHHHHHHHHHcCCCEE
Confidence 888 88999999999753 221 23467889999999999999999973 45566777888899999
Q ss_pred EEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC-----CCHHHHHhhccCCcccHHHHH
Q psy8082 236 IITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG-----GNLDSCRLRNGRGILKELQCL 310 (379)
Q Consensus 236 ivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g-----~~l~~A~~~~~~~~~~~~A~~ 310 (379)
+||+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ | +++++|+++ |++
T Consensus 238 vvT~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaF~ag~~~~l~~---g~~~~~~~l~~a~~~---------A~a 302 (339)
T 1tyy_A 238 IISLGADGALLITAE--GEFHFPA-PRVDVVDTTGAGDAFVGGLLFTLSR---ANCWDHALLAEAISN---------ANA 302 (339)
T ss_dssp EEECGGGCEEEESSS--CEEEECC-CCCCCSCCTTHHHHHHHHHHHHHTT---SSSCCHHHHHHHHHH---------HHH
T ss_pred EEEECCCceEEEeCC--ceEEcCC-CCCCcCCCCCchHHHHHHHHHHHHh---ccccccccHHHHHHH---------HHH
Confidence 999999999999876 5789999 8889999999999999999999999 8 899999999 999
Q ss_pred HH-HHHhccccCCCCCChhHHHHHHHH
Q psy8082 311 VA-RRVQLEGKNSSERKSNSAFVSWFK 336 (379)
Q Consensus 311 ~A-~~v~~~G~~~~~p~~~~~~~~~~~ 336 (379)
+| +++++.|+.+++|+.+++. ++++
T Consensus 303 ~aa~~v~~~G~~~~~p~~~ev~-~~l~ 328 (339)
T 1tyy_A 303 CGAMAVTAKGAMTALPFPDQLN-TFLS 328 (339)
T ss_dssp HHHHGGGSSSTTTTCCCHHHHH-HHHC
T ss_pred HHHHHhCCCCCCCCCCCHHHHH-HHHh
Confidence 99 9999999988899998864 5544
No 35
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.4e-42 Score=334.30 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=247.8
Q ss_pred CCcEEEECccccceecccCCCCCCCCceec---CcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhh
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKG---YHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKY 90 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~---~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~ 90 (379)
.|.++|+|++++|+++.+++ |.+++.+++ ..+...+||+++|+|.++++||.++.++|.+|+| +|+.+++.|++
T Consensus 12 ~~~~~v~G~~~vD~~~~~~~-~~~g~~~~~s~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G~~i~~~L~~- 88 (331)
T 2ajr_A 12 HMVLTVTLNPALDREIFIED-FQVNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKILVEELRK- 88 (331)
T ss_dssp CCEEEEESSCEEEEEEECTT-CCSSCEEECCSGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HHHHHHHHHHH-
T ss_pred ceEEEEecchHHeEEEEcCC-ccCCceEEeccccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHH-
Confidence 47899999999999999998 688898888 8999999999999999999999999999999998 99999999999
Q ss_pred cC--CcccceeeeCCcCceeEEEEEcCCCce-eEEecCCcCCCCCHHHHHHH----HhhccCccEEEEeCCCC----HHH
Q psy8082 91 NS--INTKYIWLLQDVTTGVCSKVISNKGTH-QTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGETP----WET 159 (379)
Q Consensus 91 ~g--i~~~~i~~~~~~~T~~~~~~~~~~g~~-~~~~~~~~~~~l~~~~l~~~----~~~l~~~~~v~~~~~~~----~~~ 159 (379)
+| |+++++...+ .|++++.+++++|++ .++...++ .+++++++.. .+.+++++++|+++..+ .+.
T Consensus 89 ~g~~V~~~~v~~~~--~t~~~~~~v~~~g~~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 164 (331)
T 2ajr_A 89 ISKLITTNFVYVEG--ETRENIEIIDEKNKTITAINFPGP--DVTDMDVNHFLRRYKMTLSKVDCVVISGSIPPGVNEGI 164 (331)
T ss_dssp HCTTEEEEEEEESS--CCEEEEEEEETTTTEEEEEECCCC--CCCHHHHHHHHHHHHHHHTTCSEEEEESCCCTTSCTTH
T ss_pred cCCccceEEEEcCC--CCeEEEEEEeCCCceEEEEeCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEECCCCCCCCHHH
Confidence 99 9999887643 488888888888888 54433443 4788877653 23478999999998664 367
Q ss_pred HHHHHHHhhhhccCCcEEEEecCCCCCCCchhhccc---CeEEEeCHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCCEE
Q psy8082 160 TLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL---ADIICINEQE-AEIITDMKINNEEDLADCMEKLLDMKCNTV 235 (379)
Q Consensus 160 ~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~---~dil~~N~~E-~~~l~~~~~~~~~~~~~~~~~l~~~g~~~v 235 (379)
+.++++.+ ++.+.++++||.+. .+.++++. +|++++|++| ++.|++....+.+++.++++.|.++ ++.|
T Consensus 165 ~~~~~~~a---~~~g~~v~~D~~~~---~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~~~~~~~~l~~~-~~~v 237 (331)
T 2ajr_A 165 CNELVRLA---RERGVFVFVEQTPR---LLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEK-SQVS 237 (331)
T ss_dssp HHHHHHHH---HHTTCEEEEECCHH---HHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHHHHHHHHHHHHH-SSEE
T ss_pred HHHHHHHH---HHcCCEEEEECChH---HHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHHHHHHHHHHHHh-cCEE
Confidence 88899999 89999999999853 24455654 9999999999 9999987666667788889999988 9999
Q ss_pred EEEecCCceEEEecCCCceEEEc-cCCCcCcccCCChhHHHHHHHHHHHH-hcCCCCCHHHHHhhccCCcccHHHHHHH-
Q psy8082 236 IITLGGSGVVYATRDNPRLKTIT-VDHVEYPIESEGVGDCFVGALAYYFK-AGQKGGNLDSCRLRNGRGILKELQCLVA- 312 (379)
Q Consensus 236 ivT~G~~G~~~~~~~~~~~~~~~-~~~~~~vvDttGAGDaF~ag~~~~l~-~~~~g~~l~~A~~~~~~~~~~~~A~~~A- 312 (379)
+||+|++|+++++++ +.+++| + ++++++|||||||+|+|||+++|+ + |+++++|+++ |+++|
T Consensus 238 vvT~G~~Ga~~~~~~--~~~~~~~~-~~v~vvDttGAGDaF~ag~l~~l~~~---g~~~~~al~~---------A~a~aa 302 (331)
T 2ajr_A 238 VVSYEVKNDIVATRE--GVWLIRSK-EEIDTSHLLGAGDAYVAGMVYYFIKH---GANFLEMAKF---------GFASAL 302 (331)
T ss_dssp EEEETTTEEEEECSS--CEEEEEES-SCCCGGGCTTHHHHHHHHHHHHHHHH---CSCHHHHHHH---------HHHHHH
T ss_pred EEeecCCceEEEeCC--cEEEEecC-CcccccCCCchHHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHH
Confidence 999999999999876 578899 8 888999999999999999999999 9 9999999999 99999
Q ss_pred HHHhccccCCCCCChhHHH
Q psy8082 313 RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 313 ~~v~~~G~~~~~p~~~~~~ 331 (379)
++|++.|+. +|+.+++.
T Consensus 303 ~~v~~~G~~--~~~~~ev~ 319 (331)
T 2ajr_A 303 AATRRKEKY--MPDLEAIK 319 (331)
T ss_dssp HHTTSSSCC--CCCHHHHH
T ss_pred HHHcCcCcC--CCCHHHHH
Confidence 999999984 78888763
No 36
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=6.3e-42 Score=328.65 Aligned_cols=290 Identities=15% Similarity=0.159 Sum_probs=246.7
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
|.++|+|++++|++..+++ |.++++++...+...+||+++|+|.++++||.++.++|.+|+ .+|+.+++.|++ +||+
T Consensus 3 m~i~v~g~~~~D~~~~v~~-~~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~~~L~~-~gV~ 79 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLDH-LKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIANELKK-ANIP 79 (323)
T ss_dssp CEEEEESSCEEEEEEECSC-CCTTSEEEESCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHHHHHHH-TTCC
T ss_pred eEEEEecCceeEEEEecCC-cccCCEEEeceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHHHHHHH-CCCc
Confidence 4899999999999999998 688999999999999999999999999999999999999997 599999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH----hhccCccEEEEeCCCC----HHHHHHHHHH
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGETP----WETTLYCLSK 166 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~----~~l~~~~~v~~~~~~~----~~~~~~~~~~ 166 (379)
++++...+ .|++++.+++++ ++.++...++ .+++++++... +.++++|++|+++..+ .+.+.++++.
T Consensus 80 ~~~v~~~~--~t~~~~~~~~~~-~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~ 154 (323)
T 2f02_A 80 QAFTSIKE--ETRDSIAILHEG-NQTEILEAGP--TVSPEEISNFLENFDQLIKQAEIVTISGSLAKGLPSDFYQELVQK 154 (323)
T ss_dssp BCCEEESS--CCEEEEEEEETT-EEEEEEECCC--BCCHHHHHHHHHHHHHHHTTCSEEEEESCCCBTSCTTHHHHHHHH
T ss_pred eeEEEcCC--CCeeEEEEEcCC-CeEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCChHHHHHHHHH
Confidence 99987643 477777777765 6555444443 57888776432 2468999999987654 3778889999
Q ss_pred hhhhccCCcEEEEecCCCCCCCchhhc---ccCeEEEeCHHHHHHhhCCCCC-Ch-hhHHHHHHHHHhcCCCEEEEEecC
Q psy8082 167 LHVSLESRAKIIVNPSPAVYPLNPIVM---ILADIICINEQEAEIITDMKIN-NE-EDLADCMEKLLDMKCNTVIITLGG 241 (379)
Q Consensus 167 a~~~~~~~~~v~~D~~~~~~~~~~~ll---~~~dil~~N~~E~~~l~~~~~~-~~-~~~~~~~~~l~~~g~~~vivT~G~ 241 (379)
+ ++.+.++++||.+. .+.+++ +++|++++|++|++.|++.... +. ++..++++.|.++|++.|+||+|+
T Consensus 155 a---~~~g~~v~~Dp~~~---~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~ 228 (323)
T 2f02_A 155 A---HAQEVKVLLDTSGD---SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGK 228 (323)
T ss_dssp H---HHTTCEEEEECCTH---HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHHHHHHHTSGGGTTCSEEEEECGG
T ss_pred H---HHCCCEEEEECChH---HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCCEEEEeecC
Confidence 9 88999999999853 234555 4899999999999999997644 44 567788888888999999999999
Q ss_pred CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 242 SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 242 ~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+|+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.|+
T Consensus 229 ~G~~~~~~~--~~~~~~~-~~v~vvdttGAGDaF~a~~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~G~ 293 (323)
T 2f02_A 229 DGAIAKHHD--QFYRVKI-PTIQAKNPVGSGDATIAGLAYGLAK---DAPAAELLKW---------GMAAGMANAQERMT 293 (323)
T ss_dssp GCEEEEETT--EEEEEEC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHHSSSS
T ss_pred CceEEEeCC--CEEEEcC-CCccccCCccHHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCCCc
Confidence 999999876 5788998 8889999999999999999999999 9999999999 99999 99999998
Q ss_pred CCCCCChhHHHHHHHH
Q psy8082 321 NSSERKSNSAFVSWFK 336 (379)
Q Consensus 321 ~~~~p~~~~~~~~~~~ 336 (379)
. +|+.+++ +++++
T Consensus 294 ~--~~~~~ev-~~~~~ 306 (323)
T 2f02_A 294 G--HVDVENV-KKHLM 306 (323)
T ss_dssp S--CCCHHHH-HHHHT
T ss_pred C--CCCHHHH-HHHhh
Confidence 4 7888876 45544
No 37
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=1.5e-43 Score=342.74 Aligned_cols=292 Identities=21% Similarity=0.248 Sum_probs=245.5
Q ss_pred CCCcEEEECccccceecccCC-C-----CCCCCcee--------------cCcEEEecCChHHHHHHHHHHCC----CCe
Q psy8082 13 DEADIVVVGSCLVEFITYVQT-L-----PKPEETVK--------------GYHFEQRFSGKGANQCVAAAKLR----ASV 68 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~-~-----p~~~~~~~--------------~~~~~~~~GG~a~nvA~~l~~LG----~~v 68 (379)
+.++|+|+|++++|++..+++ + +.+++.+. ...+...+||+++|+|.++++|| .++
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~lgg~~~~~~ 84 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHKAA 84 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHHSCCEEEEECHHHHHHHHHHHHHCSSTTCE
T ss_pred ccccEEEECCcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHhcCCCCCcE
Confidence 556899999999999999886 1 34444333 35788999999999999999996 899
Q ss_pred eEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHH-HHH--HHHhhccC
Q psy8082 69 ALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS-DID--AAKNLLLK 145 (379)
Q Consensus 69 ~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~l~--~~~~~l~~ 145 (379)
.|+|.+|+|.+|+.+++.|++ +||+++++. .++.+|+.++++++ +|+|+++...++...++++ +++ ...+.+++
T Consensus 85 ~~ig~vG~D~~G~~i~~~L~~-~gv~~~~v~-~~~~~T~~~~~~~~-~g~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (345)
T 1bx4_A 85 TFFGCIGIDKFGEILKRKAAE-AHVDAHYYE-QNEQPTGTCAACIT-GDNRSLIANLAAANCYKKEKHLDLEKNWMLVEK 161 (345)
T ss_dssp EEEEEEESSHHHHHHHHHHHH-TTCEEEEEE-ESSSCCCEEEEEEE-TTEEEEEEECGGGGGCCGGGTTTSHHHHHHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHH-cCCceeeee-cCCCCCceEEEEEc-CCceEeeeccchHhhcCcccccCcHHHHHHHhh
Confidence 999999999999999999999 999999886 45678999998887 7888877667777777777 554 22334778
Q ss_pred ccEEEEeCC---CCHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCCCCCh
Q psy8082 146 AKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINNE 217 (379)
Q Consensus 146 ~~~v~~~~~---~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~ 217 (379)
++++|+++. .+.+.+.++++.+ ++.+.++++||.+..+ +.+.++++++|++++|++|++.|++....+.
T Consensus 162 ~~~v~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~ 238 (345)
T 1bx4_A 162 ARVCYIAGFFLTVSPESVLKVAHHA---SENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFET 238 (345)
T ss_dssp CSEEEEEGGGGGTCHHHHHHHHHHH---HHTTCEEEEECCSHHHHHHTHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCC
T ss_pred CCEEEEEEEeccCCHHHHHHHHHHH---HHcCCEEEEeCCcHHHHHHHHHHHHHHhccCCEEeCCHHHHHHHhcccCCCC
Confidence 999999863 4678889999999 8899999999985432 2345689999999999999999987643344
Q ss_pred hhHHHHHHHHHh------cCCCEEEEEecCCceEEEecCCCceEEEccCCCc---CcccCCChhHHHHHHHHHHHHhcCC
Q psy8082 218 EDLADCMEKLLD------MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYFKAGQK 288 (379)
Q Consensus 218 ~~~~~~~~~l~~------~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~~~~l~~~~~ 288 (379)
+++.++++.|.+ +|++.|+||+|++|+++++++ +.+++|+ +++ +++|||||||+|+|||+++|++
T Consensus 239 ~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~v~~~~vvDttGAGDaf~ag~~~~l~~--- 312 (345)
T 1bx4_A 239 KDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATES--EVTAFAV-LDQDQKEIIDTNGAGDAFVGGFLSQLVS--- 312 (345)
T ss_dssp CCHHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECSS--CEEEECC-CCCCCTTCCCHHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEECC--eEEEEec-cccCcCccccCCCcchHHHHHHHHHHHc---
Confidence 578888899988 599999999999999998766 5788998 666 8999999999999999999999
Q ss_pred CCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCCh
Q psy8082 289 GGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKS 327 (379)
Q Consensus 289 g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~ 327 (379)
|+++++|+++ |+++| +++++.|+. +|+.
T Consensus 313 g~~~~~a~~~---------A~~~aa~~v~~~G~~--~p~~ 341 (345)
T 1bx4_A 313 DKPLTECIRA---------GHYAASIIIRRTGCT--FPEK 341 (345)
T ss_dssp TCCHHHHHHH---------HHHHHHHHTTSSSSC--CCSS
T ss_pred CCCHHHHHHH---------HHHHHHHHHhccCCC--CCCc
Confidence 9999999999 99999 999999986 5544
No 38
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=8.1e-43 Score=335.48 Aligned_cols=288 Identities=17% Similarity=0.245 Sum_probs=242.9
Q ss_pred cEEEECccccceeccc----------CCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecC-ChhHHHHH
Q psy8082 16 DIVVVGSCLVEFITYV----------QTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN-DKFGKSYL 84 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~----------~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~-D~~g~~i~ 84 (379)
+|+|+|++++|+++.+ +++|.+++.+.+..+...+||+++|+|.++++||.++.++|.+|+ | +|+ ++
T Consensus 2 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~~D-~g~-i~ 79 (326)
T 3b1n_A 2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVD-AQP-YL 79 (326)
T ss_dssp CEEEESCCEEEEEEECSSCGGGGCCTTSSSSCEEEEECCSCCCEEECHHHHHHHHHHHTTCCEEEEEEEETTT-CHH-HH
T ss_pred cEEEECcceEEEEEecchhhhhhccccccCCCCcceecccceeccCCHHHHHHHHHHHcCCCeeEEEEECCcC-HHH-HH
Confidence 7999999999999988 778877777777788889999999999999999999999999999 9 899 99
Q ss_pred HHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHH
Q psy8082 85 EELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCL 164 (379)
Q Consensus 85 ~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 164 (379)
+.|++ +||+++++...++.+|+++++.++++|++.+....++...+++++++. .++++++|+++.. ++.+.+++
T Consensus 80 ~~L~~-~gVd~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~ga~~~~~~~~~~~----~~~~~~v~~~~~~-~~~~~~~~ 153 (326)
T 3b1n_A 80 DRMDA-LGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGE----AKDIKLAIVGPDG-FQGMVQHT 153 (326)
T ss_dssp HHHHH-HTCEEEEEEEETTCCCEEEEEEECTTCCCEEEEECGGGGGGGGSCGGG----CCSCSEEEECSCC-HHHHHHHH
T ss_pred HHHHH-cCCcccceEEcCCCCceEEEEEECCCCceEEEEecChhhhcChhhccc----ccCCCEEEECCcc-HHHHHHHH
Confidence 99999 999999998877789999999999888888766666655555555432 2789999998764 57788889
Q ss_pred HHhhhhccCCcEEEEecCCCC--C--CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEec
Q psy8082 165 SKLHVSLESRAKIIVNPSPAV--Y--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~--~--~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G 240 (379)
+.+ ++.+.++++||.... | +.+.++++++|++++|++|++.|++....+ .. .+.+ +++.|+||+|
T Consensus 154 ~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~---~~----~l~~-~~~~vvvT~G 222 (326)
T 3b1n_A 154 EEL---AQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWS---ED----EIAS-RVQALIITRG 222 (326)
T ss_dssp HHH---HHHTCCEEECCGGGGGGCCHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCC---HH----HHHT-TSSEEEEECG
T ss_pred HHH---HHCCCEEEEeCchhhhhccHHHHHHHHHhCCEEecCHHHHHHHhCCCCCC---HH----HHHh-cCCEEEEecC
Confidence 988 888999999997532 2 234578899999999999999998753222 22 2334 3899999999
Q ss_pred CCceEEEecCCCceEEEccCCCcC-cccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 241 GSGVVYATRDNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 241 ~~G~~~~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
++|+++++++ +.+++|+ ++++ ++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++.
T Consensus 223 ~~Ga~~~~~~--~~~~~~~-~~v~~vvDttGAGDaF~ag~l~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~ 287 (326)
T 3b1n_A 223 EHGATIRHRD--GTEQIPA-VRAERVIDPTGCGDAFRGGLLYGIEH---GFDWATAGRL---------ASLMGALKIAHQ 287 (326)
T ss_dssp GGCEEEEETT--EEEEECC-CCCSCCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSS
T ss_pred CCceEEEECC--cEEEeCC-CCCCCCCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCC
Confidence 9999999876 5788998 7775 789999999999999999999 9999999999 99999 999999
Q ss_pred ccCCCCCChhHHHHHHHHh
Q psy8082 319 GKNSSERKSNSAFVSWFKN 337 (379)
Q Consensus 319 G~~~~~p~~~~~~~~~~~~ 337 (379)
|+..+.|+.+++...+.+.
T Consensus 288 G~~~~~~~~~ev~~~l~~~ 306 (326)
T 3b1n_A 288 GPQTYAPTRAEIDARFETA 306 (326)
T ss_dssp STTCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHh
Confidence 9998899998875544443
No 39
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=2.2e-42 Score=338.25 Aligned_cols=297 Identities=19% Similarity=0.191 Sum_probs=243.4
Q ss_pred CcEEEECccccceecccCC-------CCCCC-------------CceecCcEEEecCChHHHHHHHHHHCCCC---eeEE
Q psy8082 15 ADIVVVGSCLVEFITYVQT-------LPKPE-------------ETVKGYHFEQRFSGKGANQCVAAAKLRAS---VALI 71 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~-------~p~~~-------------~~~~~~~~~~~~GG~a~nvA~~l~~LG~~---v~lv 71 (379)
..|++||++++|++..++. +++.. +.....+.+..+||++.|+|+++++||.+ +.|+
T Consensus 27 ~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~~~~~fi 106 (372)
T 3uq6_A 27 GYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSYV 106 (372)
T ss_dssp TCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCSTTSEEEE
T ss_pred CeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCCCcEEEE
Confidence 4599999999999998872 22111 11223356778999999999999999865 8999
Q ss_pred EEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH--HHhhccCccEE
Q psy8082 72 SKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKAKVI 149 (379)
Q Consensus 72 s~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~l~~~~~v 149 (379)
|+||+|.+|+.+++.|++ .||+++++...++.+|+.+.++++ +|+|+++.+.++...+++++++. ..+.+++++++
T Consensus 107 G~VG~D~~G~~l~~~L~~-~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~~~~~~~~i~~a~~~ 184 (372)
T 3uq6_A 107 GCIGADIQGKYIKNDCSA-LDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVY 184 (372)
T ss_dssp EEECSSHHHHHHHHHHHH-TTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHHHHHHCSEE
T ss_pred eeecCCHHHHHHHHHHHH-cCCCceeeeecCCCCceEEEEEcC-CCceEEEEeccchhhcchhhhhhhhHHHHhhcccEE
Confidence 999999999999999999 999999988777778888887775 79999998889999999998853 23558899999
Q ss_pred EEeCCC---CHHHHHHHHHHhhhhccCCcEEEEecCCCC-----CCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHH
Q psy8082 150 MFQGET---PWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLA 221 (379)
Q Consensus 150 ~~~~~~---~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~-----~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~ 221 (379)
|+++.. ..+...++++.+ ++.+.++++|++... ++.+.++++++|++++|++|++.|++....+.++..
T Consensus 185 ~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~ldls~~~~~~~~~~~l~~ll~~~Dil~~Ne~Ea~~l~~~~~~~~~~~~ 261 (372)
T 3uq6_A 185 YIAGFVINTCYEGMLKIAKHS---LENEKLFCFNLSAPFLSQFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVH 261 (372)
T ss_dssp EEEGGGHHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHH
T ss_pred EEecccccccHHHHHHHHHHH---HHcCCeEeeccccchhhhhhHHHHHHHhhcCCcccCCHHHHHHHhCCCCCchhHHH
Confidence 999854 346677888888 999999999998542 134567889999999999999999887555556777
Q ss_pred HHHHHHHh-------cCCCEEEEEecCCceEEEecCCCceEEEcc--CCCcCcccCCChhHHHHHHHHHHHHhcCCCCCH
Q psy8082 222 DCMEKLLD-------MKCNTVIITLGGSGVVYATRDNPRLKTITV--DHVEYPIESEGVGDCFVGALAYYFKAGQKGGNL 292 (379)
Q Consensus 222 ~~~~~l~~-------~g~~~vivT~G~~G~~~~~~~~~~~~~~~~--~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l 292 (379)
+.++.+.+ .+++.++||+|++|++++++++.+...+|. .+..++||||||||+|+|||+++|++ |+++
T Consensus 262 ~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~v~~~~~~~vVDTtGAGDaF~agfl~~l~~---g~~l 338 (372)
T 3uq6_A 262 ATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIR---GKPM 338 (372)
T ss_dssp HHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCSSCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTT---TCCH
T ss_pred HHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCceeeeeeccCCCCCceeCCCchHHHHHHHHHHHHHc---CCCH
Confidence 88877765 367889999999999999876544444443 12347999999999999999999999 9999
Q ss_pred HHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082 293 DSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA 330 (379)
Q Consensus 293 ~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~ 330 (379)
++|+++ |+.+| .+|++.|+. +|+.++.
T Consensus 339 ~~a~~~---------a~~aAa~vv~~~Ga~--lp~r~~~ 366 (372)
T 3uq6_A 339 ITSLHA---------AVKAAAYIICRSGFS--LGSRDSY 366 (372)
T ss_dssp HHHHHH---------HHHHHHHHHTSSSSC--CCCGGGC
T ss_pred HHHHHH---------HHHHHHHHHcCCCCC--CCChhHH
Confidence 999999 99999 999999985 7777764
No 40
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=7.7e-41 Score=318.50 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=245.6
Q ss_pred EEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCccc
Q psy8082 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (379)
Q Consensus 17 i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~ 96 (379)
+.|.|++++|++..++++ .+++.++.......+||+++|+|.++++||.++.++|.+|+ .+|+.+++.|++ +||+++
T Consensus 3 ~tv~~n~~~D~~~~~~~~-~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~L~~-~gv~~~ 79 (306)
T 2abq_A 3 YTVTLNPSIDYIVQVENF-QQGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVRNALEK-EEIGLS 79 (306)
T ss_dssp EEEESSCEEEEEEECTTC-CSSSEEECSEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHHHHHHH-TTCEEC
T ss_pred EEEecCchheEEEEcCCc-ccCCeEEeceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHHHHHHH-cCCceE
Confidence 567799999999999996 78889999899999999999999999999999999999998 799999999999 999999
Q ss_pred ceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhh---ccCccEEEEeCCCC----HHHHHHHHHHhhh
Q psy8082 97 YIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNL---LLKAKVIMFQGETP----WETTLYCLSKLHV 169 (379)
Q Consensus 97 ~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~---l~~~~~v~~~~~~~----~~~~~~~~~~a~~ 169 (379)
++...+ .|++++.+ ++|++.++...+ ..+++++++...+. ++++|++|+++..+ .+.+.++++.+
T Consensus 80 ~v~~~~--~t~~~~~~--~~g~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a-- 151 (306)
T 2abq_A 80 FIEVEG--DTRINVKI--KGKQETELNGTA--PLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQIA-- 151 (306)
T ss_dssp CEEESS--CCEEEEEE--ESSSCEEEBCCC--CCCCHHHHHHHHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHHHH--
T ss_pred EEEcCC--CCceEEEE--eCCceEEEECCC--CCCCHHHHHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHH--
Confidence 987643 47777655 578876554333 35888887654322 57899999987654 36788899999
Q ss_pred hccCCcEEEEecCCCCCCCchhhcc-cCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe
Q psy8082 170 SLESRAKIIVNPSPAVYPLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248 (379)
Q Consensus 170 ~~~~~~~v~~D~~~~~~~~~~~ll~-~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~ 248 (379)
++++.++++||.+. .+.++++ ++|++++|++|++.|++....+.+++.++++.|.++|++.++||+|++|+++++
T Consensus 152 -~~~g~~v~~D~~~~---~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 227 (306)
T 2abq_A 152 -KERGAFVAVDTSGE---ALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFAS 227 (306)
T ss_dssp -HTTTCEEEEECCHH---HHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHHHHHHHHHTTCCEEEEECGGGCEEEEE
T ss_pred -HhcCCEEEEECChH---HHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEe
Confidence 99999999999753 3457888 999999999999999998666667888889999999999999999999999988
Q ss_pred cCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCCh
Q psy8082 249 RDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKS 327 (379)
Q Consensus 249 ~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~ 327 (379)
++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| +++++. ++|+.
T Consensus 228 ~~--~~~~~~~-~~v~vvdttGAGDaF~a~~~~~l~~---g~~~~~a~~~---------A~a~aa~~v~~~----~~p~~ 288 (306)
T 2abq_A 228 AE--GMFHVNV-PSGEVRNSVGAGDSVVAGFLAALQE---GKSLEDAVPF---------AVAAGSATAFSD----GFCTR 288 (306)
T ss_dssp TT--EEEEECC-CCCCCCCCSSHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHHSS----SCCCH
T ss_pred CC--CEEEEeC-CCccccCCccHHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhcCc----CCCCH
Confidence 76 5788998 8889999999999999999999999 9999999999 99999 999998 47888
Q ss_pred hHHHHHHHHh
Q psy8082 328 NSAFVSWFKN 337 (379)
Q Consensus 328 ~~~~~~~~~~ 337 (379)
+++. +++++
T Consensus 289 ~ev~-~~~~~ 297 (306)
T 2abq_A 289 EEVE-RLQQQ 297 (306)
T ss_dssp HHHH-HHHHH
T ss_pred HHHH-HHHhh
Confidence 8864 44443
No 41
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=1.7e-41 Score=325.10 Aligned_cols=287 Identities=18% Similarity=0.160 Sum_probs=242.6
Q ss_pred cEEEECccccce-ecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 16 DIVVVGSCLVEF-ITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 16 ~i~viG~~~iD~-i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
-+.|.+++++|+ ++.++++ .+++++++..+...+||++.|+|.++++||.++.++|.+|+| +|+.+++.|++ +||+
T Consensus 4 i~tvt~np~iD~~~~~v~~~-~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~l~~-~gv~ 80 (320)
T 3ie7_A 4 IYTITLNPAIDRLLFIRGEL-EKRKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKLYAILKE-KHIN 80 (320)
T ss_dssp EEEEESSCEEEEEEEESSSC-CTTSCCCCSEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHHHHHHHH-TTCC
T ss_pred EEEEecchHHeeeEEEcCCc-cCCCeeEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHHHHH-cCCc
Confidence 566778999999 9999998 789999999999999999999999999999999999999999 99999999999 9999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCc--eeEEecCCcCCCCCHHHHHHH----HhhccCccEEEEeCCCC----HHHHHHHH
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGT--HQTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGETP----WETTLYCL 164 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~--~~~~~~~~~~~~l~~~~l~~~----~~~l~~~~~v~~~~~~~----~~~~~~~~ 164 (379)
++++...++ +|+.++++++ +|+ |+++...+ ..+++++++.+ .+.++++|++|+++..+ .+.+.+++
T Consensus 81 ~~~v~~~~~-~t~~~~~~~~-~g~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 156 (320)
T 3ie7_A 81 HDFLVEAGT-STRECFVVLS-DDTNGSTMIPEAG--FTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELL 156 (320)
T ss_dssp BCCEEETTC-CCEEEEEEEE-TTCSCCEEEECCC--CCCCHHHHHHHHHHHHHHCCTTCEEEEESCCCTTCCHHHHHHHH
T ss_pred eEEEEecCC-CCceEEEEEE-CCCceeEEEeCCC--CCCCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 999844444 8999998888 788 77765444 46888777653 24588999999987654 57888999
Q ss_pred HHhhhhccCCcEEEEecCCCCCCCchhhcc-cCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVYPLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~-~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G 243 (379)
+.+ ++.+.++++||.+. .+.+.+. .+|++++|++|++.|+|....+ + .+.+..+.+. ++.|+||+|++|
T Consensus 157 ~~a---~~~g~~v~~D~~~~---~l~~~l~~~~dil~~N~~E~~~l~g~~~~~--~-~~~~~~~~~~-~~~vvvt~G~~G 226 (320)
T 3ie7_A 157 RTV---KATGAFLGCDNSGE---YLNLAVEMGVDFIKPNEDEVIAILDEKTNS--L-EENIRTLAEK-IPYLVVSLGAKG 226 (320)
T ss_dssp HHH---HHHTCEEEEECCHH---HHHHHHHHCCSEECCBTTGGGGGSCTTCCC--H-HHHHHHHTTT-CSEEEEECGGGC
T ss_pred HHH---HhcCCEEEEECChH---HHHHHHhcCCeEEeeCHHHHHHHhCCCcCC--C-HHHHHHHHhh-CCEEEEEcCCCc
Confidence 999 88899999999753 2344554 8999999999999999985431 1 2223334444 899999999999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCC
Q psy8082 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNS 322 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~ 322 (379)
+++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.|+
T Consensus 227 ~~~~~~~--~~~~~~~-~~v~vvdttGAGDaF~ag~~~~l~~---g~~~~~a~~~---------A~a~aa~~v~~~G~-- 289 (320)
T 3ie7_A 227 SICAHNG--KLYQVIP-PKVQERNDTGAGDVFVGAFIAGLAM---NMPITETLKV---------ATGCSASKVMQQDS-- 289 (320)
T ss_dssp EEEEETT--EEEEEEC-CCCCCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSS--
T ss_pred eEEEeCC--cEEEEeC-CccCCCCCcCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhCcCC--
Confidence 9999887 6899999 8899999999999999999999999 9999999999 99999 99999994
Q ss_pred CCCChhHHHHHHHHh
Q psy8082 323 SERKSNSAFVSWFKN 337 (379)
Q Consensus 323 ~~p~~~~~~~~~~~~ 337 (379)
+.|+.+++ ++++++
T Consensus 290 ~~~~~~ev-~~~~~~ 303 (320)
T 3ie7_A 290 SSFDLEAA-GKLKNQ 303 (320)
T ss_dssp SCCCHHHH-HHHGGG
T ss_pred CCCCHHHH-HHHhhC
Confidence 68999886 455554
No 42
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=1.3e-41 Score=324.89 Aligned_cols=275 Identities=23% Similarity=0.298 Sum_probs=234.7
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
|++|+|+|++++|++.. .+++.+....+...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 1 M~~v~viG~~~iD~~~~-----~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i~~~l~~-~gv 74 (313)
T 3ewm_A 1 MSLIASIGELLIDLISV-----EEGDLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSK-ENV 74 (313)
T ss_dssp -CEEEEESCCEEEEEES-----SSSCTTTCCEEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHH-TTC
T ss_pred CCcEEEECceeeeeecC-----CCCCcccccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 57899999999999864 245666777899999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecCC-cCCCCCHHHHHHHHhhccCccEEEEeCC-----CCHHHHHHHHHHh
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG-ANTYLSASDIDAAKNLLLKAKVIMFQGE-----TPWETTLYCLSKL 167 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~-~~~~l~~~~l~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a 167 (379)
+++++.+.++.+|+++++.++. |+++++.+.+ +...+++++++. ..+++++++|+++. .+.+.+.++++.+
T Consensus 75 ~~~~v~~~~~~~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~~~~~~--~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~a 151 (313)
T 3ewm_A 75 DTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNMTLNDINW--DIVEEAKIVNFGSVILARNPSRETVMKVIKKI 151 (313)
T ss_dssp BCTTEEEESSSCCEEEEEECSS-SSCEEEECCSSGGGCCCGGGCCH--HHHHHCSEEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred CccceeecCCCCceEEEEEecC-CCcceEeeccCHHHhCChhhCCH--HHhCCCCEEEEcCcccCCcchHHHHHHHHHHh
Confidence 9999988888899999888775 8999887765 457788887763 23778999999874 2457788889988
Q ss_pred hhhccCCcEEEEecCCCC--CC--------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEE
Q psy8082 168 HVSLESRAKIIVNPSPAV--YP--------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVII 237 (379)
Q Consensus 168 ~~~~~~~~~v~~D~~~~~--~~--------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~viv 237 (379)
+ .+.++++||.... |. .+.++++.+|++++|++|++.|++.... ..+.+.|+|
T Consensus 152 ---~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~-------------~~~~~~vvi 214 (313)
T 3ewm_A 152 ---K-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE-------------VKGSMLTAI 214 (313)
T ss_dssp ---B-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC-------------CCCSSEEEE
T ss_pred ---c-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc-------------ccCceEEEE
Confidence 7 4789999997532 22 3456788999999999999999875311 124567899
Q ss_pred EecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH--hcCCCCCHHHHHhhccCCcccHHHHHHH-HH
Q psy8082 238 TLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK--AGQKGGNLDSCRLRNGRGILKELQCLVA-RR 314 (379)
Q Consensus 238 T~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~--~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~ 314 (379)
|+|++|+++++++ +.+++|+ ++++++|||||||+|+|||+++|+ + |+++++|+++ |+++| ++
T Consensus 215 T~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaf~a~~~~~l~~~~---g~~l~~a~~~---------A~~~aa~~ 279 (313)
T 3ewm_A 215 TLGPKGCRLIKNE--TVVDVPS-YNVNPLDTTGAGDAFMAALLVGILKLK---GLDLLKLGKF---------ANLVAALS 279 (313)
T ss_dssp ECGGGEEEEEETT--EEEEEEC-CCCCCSCCTTHHHHHHHHHHHHHHHSS---SCCHHHHHHH---------HHHHHHHH
T ss_pred EECCCCeEEEECC--eeEEcCC-CCcccCCCCCchHHHHHHHHHHHHhcC---CCCHHHHHHH---------HHHHHHHH
Confidence 9999999999887 6889999 889999999999999999999999 8 9999999999 99999 99
Q ss_pred HhccccCCCCCChhHH
Q psy8082 315 VQLEGKNSSERKSNSA 330 (379)
Q Consensus 315 v~~~G~~~~~p~~~~~ 330 (379)
|++.|+.+ +|+.+++
T Consensus 280 v~~~G~~~-~p~~~ev 294 (313)
T 3ewm_A 280 TQKRGAWS-TPRKDEL 294 (313)
T ss_dssp TTSCSSCC-CCCHHHH
T ss_pred HccCCCCC-CCCHHHH
Confidence 99999965 8999885
No 43
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=8e-41 Score=318.13 Aligned_cols=286 Identities=16% Similarity=0.216 Sum_probs=244.1
Q ss_pred cEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcc
Q psy8082 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (379)
Q Consensus 16 ~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~ 95 (379)
-+.|.|++++|+++.+++ +.+++.++.......+||++.|+|.++++||.++.++|.+|+ .+|+.+++.|++ +||++
T Consensus 2 i~tvt~n~~~D~~~~~~~-~~~g~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~~l~~-~gv~~ 78 (306)
T 2jg5_A 2 IYTVTFNPSIDYVIFTND-FKIDGLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFIIDTLNN-SAIQS 78 (306)
T ss_dssp EEEEESSCEEEEEEECSS-CCTTSEEECSEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHHHHHHH-TTCEE
T ss_pred EEEEecCceEEEEEEcCC-cccCceEEeceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHHHHHHH-CCCce
Confidence 356779999999999998 578999999999999999999999999999999999999999 699999999999 99999
Q ss_pred cceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhh---ccCccEEEEeCCCC----HHHHHHHHHHhh
Q psy8082 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNL---LLKAKVIMFQGETP----WETTLYCLSKLH 168 (379)
Q Consensus 96 ~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~---l~~~~~v~~~~~~~----~~~~~~~~~~a~ 168 (379)
+++.... +|++++.+ ++|++.++...++ .+++++++...+. ++++|++|+++..+ .+.+..+++.+
T Consensus 79 ~~v~~~~--~t~~~~~~--~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a- 151 (306)
T 2jg5_A 79 NFIEVDE--DTRINVKL--KTGQETEINAPGP--HITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQIT- 151 (306)
T ss_dssp CCEECSS--CCEEEEEE--ESSSEEEEECCCC--CCCHHHHHHHHHHHTTCCTTCEEEEESCCCTTSCTTHHHHHHHHH-
T ss_pred eEEEcCC--CCeEEEEE--cCCCEEEEECCCC--CCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCChHHHHHHHHHH-
Confidence 9987643 47777655 5788766544443 5788887654322 57899999987654 46788889988
Q ss_pred hhccCCcEEEEecCCCCCCCchhhcc-cCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 169 VSLESRAKIIVNPSPAVYPLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 169 ~~~~~~~~v~~D~~~~~~~~~~~ll~-~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
++++.++++||.+. .+.++++ .+|++++|++|++.|++....+.++..++++.+.++|++.|+||+|++|++++
T Consensus 152 --~~~g~~v~~D~~~~---~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 226 (306)
T 2jg5_A 152 --AQTGAKLVVDAEKE---LAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYI 226 (306)
T ss_dssp --HHHCCEEEEECCHH---HHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHHHHHHHHHHTTCSCEEEECGGGCEEEE
T ss_pred --HHCCCEEEEECChH---HHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEE
Confidence 88899999999753 2446677 69999999999999999876666778888999999999999999999999998
Q ss_pred ecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCC
Q psy8082 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERK 326 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~ 326 (379)
+++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++ |+++| ++|++.| +|+
T Consensus 227 ~~~--~~~~~~~-~~v~vvdttGAGDaf~a~~~~~l~~---g~~~~~a~~~---------A~a~aa~~v~~~G----~~~ 287 (306)
T 2jg5_A 227 DKE--ISIKAVN-PQGKVVNTVGSGDSTVAGMVAGIAS---GLSIEKAFQQ---------AVACGTATAFDED----LAT 287 (306)
T ss_dssp CSS--EEEEEEC-CCCCCCCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSS----SCC
T ss_pred eCC--cEEEEeC-CcccccCCcChHHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCCC----CCC
Confidence 766 5788998 8889999999999999999999999 9999999999 99999 9999999 788
Q ss_pred hhHHHHHHHH
Q psy8082 327 SNSAFVSWFK 336 (379)
Q Consensus 327 ~~~~~~~~~~ 336 (379)
.+++. ++++
T Consensus 288 ~~ev~-~~~~ 296 (306)
T 2jg5_A 288 RDAIE-KIKS 296 (306)
T ss_dssp HHHHH-HHHT
T ss_pred HHHHH-HHHh
Confidence 88864 4443
No 44
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=2.6e-42 Score=329.09 Aligned_cols=276 Identities=17% Similarity=0.207 Sum_probs=232.1
Q ss_pred ccccCCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHH
Q psy8082 8 VANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEEL 87 (379)
Q Consensus 8 ~~~~~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l 87 (379)
|-...++++|+|+|++++|++..++++| +++.+.+..+...+||+++|+|.++++||.++.++|.+|+| +|+.+++.|
T Consensus 14 ~~~~~~~~~v~viG~~~iD~~~~~~~~p-~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~G~~i~~~L 91 (306)
T 3bf5_A 14 NLYFQGMRFLAYFGHLNIDVLISVDSIP-REGSVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-THREYLAMI 91 (306)
T ss_dssp -----CCEEEEEECCCEEEEEEECSCCC-SSEEEECSEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-TCHHHHHHH
T ss_pred ceeccCCCcEEEECCceEEEEEecCCCC-CCceEECcceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-hHHHHHHHH
Confidence 3344567899999999999999999998 78888888899999999999999999999999999999999 999999999
Q ss_pred hhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHh
Q psy8082 88 RKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKL 167 (379)
Q Consensus 88 ~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a 167 (379)
++ .||+++++...++.+|+.+++++++ |+|+++.+.++...++ +++ -++++++|+++.. ...++++.+
T Consensus 92 ~~-~gV~~~~v~~~~~~~T~~~~~~~~~-g~r~~~~~~ga~~~~~-~~l------~~~~~~v~~~~~~---~~~~~~~~a 159 (306)
T 3bf5_A 92 ES-MGINTGHVEKFEDESGPICYIATDG-KKQVSFMHQGAMAAWA-PQL------ADEYEYVHFSTGP---NYLDMAKSI 159 (306)
T ss_dssp HH-TTCCCTTEEEETTCCCSEEEEEECS-SCEEEEEECTHHHHCC-CCC------CSCEEEEEECSSS---SHHHHHHHC
T ss_pred HH-cCCCchheEecCCCCCceEEEEEcC-CeeEEEEeCChhhhhh-Hhh------cCCCCEEEECChH---HHHHHHHHh
Confidence 99 9999999877777789999999988 9998877776655554 322 1689999999765 567778877
Q ss_pred hhhccCCcEEEEecCCCCC----CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy8082 168 HVSLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (379)
Q Consensus 168 ~~~~~~~~~v~~D~~~~~~----~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G 243 (379)
++ ++++||.+..+ +.+.++++++|++++|++|++.|++....+.. .+ . ++||+|++|
T Consensus 160 ---~~---~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~-------~l-----~-vvvT~G~~G 220 (306)
T 3bf5_A 160 ---RS---KIIFDPSQEIHKYSKDELKKFHEISYMSIFNDHEYRVFREMTGLSSP-------KV-----T-TIVTNGERG 220 (306)
T ss_dssp ---CS---EEEECCGGGGGGSCHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSSC-------SS-----C-EEEEEGGGE
T ss_pred ---CC---cEEEcCchhhhhccHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCcc-------cE-----E-EEEeecccC
Confidence 65 89999986432 23457889999999999999999875321111 11 1 999999999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc--ccc
Q psy8082 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL--EGK 320 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~--~G~ 320 (379)
+++++++ +.+++|+ ++++ +|||||||+|+|||+++|++ |+++++|+++ |+++| +++++ .|+
T Consensus 221 a~~~~~~--~~~~~~~-~~v~-vDttGAGDaF~ag~~~~l~~---g~~~~~a~~~---------A~~~aa~~v~~~~~G~ 284 (306)
T 3bf5_A 221 SSLFMDG--KKYDFPA-IPSS-GDTVGAGDSFRAGLYLALYN---RRSIEKGMIY---------GTIIAHHVIDDGIENF 284 (306)
T ss_dssp EEEEETT--EEEEEEC-CCCC-SCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHHHCSTTC
T ss_pred eEEEeCC--cEEEecC-CcCC-CCCCCccHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHhccCCccc
Confidence 9999876 6888999 8889 99999999999999999999 9999999999 99999 99999 999
Q ss_pred CCCCCChhHHHH
Q psy8082 321 NSSERKSNSAFV 332 (379)
Q Consensus 321 ~~~~p~~~~~~~ 332 (379)
.+++|+.+++..
T Consensus 285 ~~~~p~~~ev~~ 296 (306)
T 3bf5_A 285 SLNMEDLERETE 296 (306)
T ss_dssp CCCHHHHHHHHH
T ss_pred cccCCCHHHHHH
Confidence 888888888643
No 45
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=2.7e-41 Score=331.71 Aligned_cols=287 Identities=18% Similarity=0.251 Sum_probs=239.0
Q ss_pred CCCcEEEECccccceecccCC-C-----CCCCCce-------------ecCcEEEecCChHHHHHHHHHHC---CCCeeE
Q psy8082 13 DEADIVVVGSCLVEFITYVQT-L-----PKPEETV-------------KGYHFEQRFSGKGANQCVAAAKL---RASVAL 70 (379)
Q Consensus 13 ~~~~i~viG~~~iD~i~~~~~-~-----p~~~~~~-------------~~~~~~~~~GG~a~nvA~~l~~L---G~~v~l 70 (379)
++++|+|+|++++|++..+++ + |.+++.+ ........+||+++|+|+++++| |.++.|
T Consensus 31 ~~~~vlviG~~~lD~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~GG~~~NvA~~la~Lg~~g~~v~~ 110 (383)
T 2abs_A 31 GPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKLLRKPGSAGY 110 (383)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGGGGGTGGGGCCEEEEESHHHHHHHHHHHHHCSTTSEEE
T ss_pred CCceEEEECcchheeEeccCHHHHHhcCCCCCceeechhhHHHHHHhhccccceeeCCChHHHHHHHHHHhccCCCcEEE
Confidence 456899999999999998876 2 4556554 24567889999999999999999 899999
Q ss_pred EEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEE
Q psy8082 71 ISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIM 150 (379)
Q Consensus 71 vs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~ 150 (379)
+|.+|+|.+|+.+++.|++ +||++.++. .++.+|+.++++++ +|+|+++...++...+++++.. .+.+++++++|
T Consensus 111 ig~vG~D~~G~~i~~~L~~-~GV~~~~v~-~~~~~T~~~~~~~~-~g~r~~~~~~~a~~~l~~~~~~--~~~l~~~~~v~ 185 (383)
T 2abs_A 111 MGAIGDDPRGQVLKELCDK-EGLATRFMV-APGQSTGVCAVLIN-EKERTLCTHLGACGSFRLPEDW--TTFASGALIFY 185 (383)
T ss_dssp EEEECSSHHHHHHHHHHHH-HTCEEEEEE-CTTCCCEEEEEEEE-TTEEEEEEECGGGGGCCCCTTH--HHHTTTCCEEE
T ss_pred EEEecCChhHHHHHHHHHH-cCCceeeee-cCCCCCeEEEEEEc-CCceeEeeccChhhhCChhhhh--HHHhhcCCEEE
Confidence 9999999999999999999 999999886 45678999999887 7888887666776666654221 23488999999
Q ss_pred EeCC---CCHHHHHHHHHHhhhhcc-CCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCC-CCC----
Q psy8082 151 FQGE---TPWETTLYCLSKLHVSLE-SRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-INN---- 216 (379)
Q Consensus 151 ~~~~---~~~~~~~~~~~~a~~~~~-~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~-~~~---- 216 (379)
+++. .+.+.+.++++.+ ++ .++++++||....+ +.+.++++++|++++|++|++.|++.. ..+
T Consensus 186 ~~g~~~~~~~~~~~~~~~~a---~~~~g~~v~~d~~~~~~~~~~~~~l~~ll~~~dil~pN~~Ea~~L~g~~~~~~~~~~ 262 (383)
T 2abs_A 186 ATAYTLTATPKNALEVAGYA---HGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKT 262 (383)
T ss_dssp EEGGGGTTCHHHHHHHHHHH---HTSTTCEEEEECCCHHHHHHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC-----
T ss_pred EeeecccCCHHHHHHHHHHH---HHhcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEeCCHHHHHHHhcccCccccccc
Confidence 9863 4678889999999 88 89999999985432 234568899999999999999998753 111
Q ss_pred -------hhhHHHHHHHHHh------c-CCCEEEEEecCCceEEEe----cCCCceEEEccCCCc---CcccCCChhHHH
Q psy8082 217 -------EEDLADCMEKLLD------M-KCNTVIITLGGSGVVYAT----RDNPRLKTITVDHVE---YPIESEGVGDCF 275 (379)
Q Consensus 217 -------~~~~~~~~~~l~~------~-g~~~vivT~G~~G~~~~~----~~~~~~~~~~~~~~~---~vvDttGAGDaF 275 (379)
.+++.++++.|.+ + |++.|+||+|++|++++. .++ +.+++|+ +++ +++|||||||+|
T Consensus 263 ~~s~~~~~~~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~-~~~~~~~-~~v~~~~vvDttGAGDaF 340 (383)
T 2abs_A 263 ALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTV-VVHEVGV-PVVAAEKIVDTNGAGDAF 340 (383)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCE-EEEEECC-CCCCGGGCCCCTTHHHHH
T ss_pred ccccccccccHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCC-eEEEecC-ccCCcCCcCcCCChHHHH
Confidence 4567788888887 3 899999999999999984 222 5788888 666 899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 276 VGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 276 ~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
+|||+++|++ |+++++|+++ |+++| ++|++.|+.
T Consensus 341 ~ag~~~~l~~---g~~l~~al~~---------A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 341 VGGFLYALSQ---GKTVKQCIMC---------GNACAQDVIQHVGFS 375 (383)
T ss_dssp HHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHhcCCcc
Confidence 9999999999 9999999999 99999 999999986
No 46
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=6.8e-41 Score=317.13 Aligned_cols=273 Identities=20% Similarity=0.210 Sum_probs=221.8
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCc
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~ 94 (379)
++|+|+|++++|++ |. ...+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 4 ~~v~viG~~~~D~~------p~----------~~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~~~~l~~-~gv- 65 (296)
T 2qhp_A 4 NIIVGMGEALWDVL------PE----------GKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIMEVFKE-KQL- 65 (296)
T ss_dssp CEEEEESCCEEEEE------TT----------EEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHHHHHHH-TTC-
T ss_pred ceEEEEchhheEec------CC----------CCCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHHHHHHHH-cCC-
Confidence 48999999999997 22 2568999999999999999999999999999999999999999 999
Q ss_pred ccceeeeCCcCceeEEEEEcCCCceeEEecCCc-CCCCCHHHHHHHHhhccCccEEEEeCCC-----CHHHHHHHHHHhh
Q psy8082 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGA-NTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYCLSKLH 168 (379)
Q Consensus 95 ~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~-~~~l~~~~l~~~~~~l~~~~~v~~~~~~-----~~~~~~~~~~~a~ 168 (379)
+++...++.+|+++++.++++|+|++..+.+. ...+++++.. .+.++++|++|+++.. +.+.+.++++.+
T Consensus 66 -~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~a- 141 (296)
T 2qhp_A 66 -KNQIERVDYPTGTVQVTLDDEGVPCYEIKEGVAWDNIPFTDEL--KRLALNTRAVCFGSLAQRNEVSRATINRFLDTM- 141 (296)
T ss_dssp -CEEEEEESSCCEEEEEC------CCEEECSSCGGGCCCCCHHH--HHHHHTEEEEEECSGGGSSHHHHHHHHHHHHHS-
T ss_pred -CEEeecCCCCceEEEEEECCCCCEEEEEecCChhhhCCcchhh--HhhhcCCCEEEECChHhcChHHHHHHHHHHHHH-
Confidence 67777667789999888888898887666543 3455332211 1237799999987532 346677888888
Q ss_pred hhcc-CCcEEEEecCCC--CC--CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCCEEEEEecCC
Q psy8082 169 VSLE-SRAKIIVNPSPA--VY--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM-KCNTVIITLGGS 242 (379)
Q Consensus 169 ~~~~-~~~~v~~D~~~~--~~--~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~-g~~~vivT~G~~ 242 (379)
++ ++.++++||... .| +.+.++++++|++++|++|++.|++....+.++..++++.+.++ |++.|+||.|++
T Consensus 142 --~~~~~~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~ 219 (296)
T 2qhp_A 142 --PDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGIN 219 (296)
T ss_dssp --CCTTSCEEEEECCCCTTCCCHHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSCHHHHHHHHHHHTTCSEEEEECGGG
T ss_pred --HhcCCCEEEEECcCCccccCHHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCCHHHHHHHHHHhcCCCEEEEeecCC
Confidence 77 689999999743 22 23457888999999999999999886444445677888888885 999999999999
Q ss_pred ceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccC
Q psy8082 243 GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKN 321 (379)
Q Consensus 243 G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~ 321 (379)
|+++++++ +.+++|+ ++++++|||||||+|+|+|+++|++ |+++++|+++ |+++| .++++.|+.
T Consensus 220 G~~~~~~~--~~~~~~~-~~v~~vdttGAGD~f~a~~~~~l~~---g~~~~~a~~~---------a~~~aa~~v~~~G~~ 284 (296)
T 2qhp_A 220 GSYVFTPG--VVSFQET-PKVPVADTVGAGDSFTAAFCASILN---GKSVPEAHKL---------AVEVSAYVCTQSGAM 284 (296)
T ss_dssp CEEEEETT--EEEEECC-CCCCCSCCTTHHHHHHHHHHHHHHH---TCCHHHHHHH---------HHHHHHHHHTSSSSS
T ss_pred CeEEEECC--eEEEeCC-CCCccccCCCchHHHHHHHHHHHHc---CCCHHHHHHH---------HHHHHHHHHcCCCCC
Confidence 99999876 6889999 8889999999999999999999999 9999999999 99999 999999998
Q ss_pred CCCCC
Q psy8082 322 SSERK 326 (379)
Q Consensus 322 ~~~p~ 326 (379)
++.|+
T Consensus 285 ~~~~~ 289 (296)
T 2qhp_A 285 PELPV 289 (296)
T ss_dssp CCCCH
T ss_pred CCCcH
Confidence 76653
No 47
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.7e-40 Score=320.77 Aligned_cols=296 Identities=19% Similarity=0.191 Sum_probs=240.2
Q ss_pred CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
.++|+++|+.+.++.. |..........+...+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus 12 ~~~~~~~ge~l~~~~~-----~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~-~gv 85 (351)
T 2afb_A 12 HMKVVTFGEIMLRLSP-----PDHKRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRK-FGV 85 (351)
T ss_dssp CCEEEEESCCEEEEEC-----STTCCGGGCSEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHHHHHHHHHH-TTC
T ss_pred cceEEEechhhheecC-----CCCccccccceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHH-cCC
Confidence 5799999999999742 1122245567899999999999999999999999999999999999999999999 999
Q ss_pred cccceeeeCCcCceeEEEEEcCCCceeEEecC---CcCCCCCHHHHHHHHhhccCccEEEEeCCCC------HHHHHHHH
Q psy8082 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP---GANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYCL 164 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~---~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~------~~~~~~~~ 164 (379)
+++++.. .+.+|+.+++..+.++++.++.+. .+...+++++++. ...+++++++|+++..+ .+.+.+++
T Consensus 86 ~~~~v~~-~~~~t~~~~v~~~~~~r~~~v~~~~~~~a~~~~~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~ 163 (351)
T 2afb_A 86 KTDYIAR-GGNRIGIYFLEIGASQRPSKVVYDRAHSAISEAKREDFDW-EKILDGARWFHFSGITPPLGKELPLILEDAL 163 (351)
T ss_dssp BCTTEEE-CSSCCCEEEEECCBTTBCCEEEEECTTCTTTTCCGGGCCH-HHHTTTEEEEEEETTSGGGSTTHHHHHHHHH
T ss_pred cceeEEE-CCCcceEEEEEecCCCCcceEEEeCCCChhhhCChhhCCH-HHhhcCCCEEEEeCcccccChhHHHHHHHHH
Confidence 9999976 466899888776653333444333 2345666666542 23478999999997643 37788888
Q ss_pred HHhhhhccCCcEEEEecCCC--CC------CCchhhcccCeEEEeCHHHHHHhhCCCCC---------ChhhHHHHHHHH
Q psy8082 165 SKLHVSLESRAKIIVNPSPA--VY------PLNPIVMILADIICINEQEAEIITDMKIN---------NEEDLADCMEKL 227 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~--~~------~~~~~ll~~~dil~~N~~E~~~l~~~~~~---------~~~~~~~~~~~l 227 (379)
+.+ ++.+.++++||... .| +.+..+++++|++++|++|++.|++.... +.+++.++++.|
T Consensus 164 ~~a---~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l 240 (351)
T 2afb_A 164 KVA---NEKGVTVSCDLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEV 240 (351)
T ss_dssp HHH---HHHTCEEEEECCCCTTTCCHHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC-------CHHHHHHHHHHH
T ss_pred HHH---HHcCCEEEEeCCCchhcCChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccccccccccchhhHHHHHHHH
Confidence 888 88899999999842 33 23457889999999999999999997643 456677888888
Q ss_pred Hhc-CCCEEEEEecCCce--------EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 228 LDM-KCNTVIITLGGSGV--------VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 228 ~~~-g~~~vivT~G~~G~--------~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
.++ |++.|+||+|.+|+ ++++++ +.+++|+ ++++++|||||||+|+|||+++|++ |+++++|+++
T Consensus 241 ~~~~g~~~vvvT~G~~G~~~~~~~g~~~~~~~--~~~~~~~-~~v~vvdttGAGDaF~ag~~~~l~~---g~~l~~a~~~ 314 (351)
T 2afb_A 241 TRKYNFKTVGITLRESISATVNYWSVMVFENG--QPHFSNR-YEIHIVDRVGAGDSFAGALIYGSLM---GFDSQKKAEF 314 (351)
T ss_dssp HHHHCCSEEEEEEEECSCSSEEEEEEEEEETT--EEEECCC-EEEECSCCTTHHHHHHHHHHHHHHH---TCCHHHHHHH
T ss_pred HHHcCCCEEEEEeCCcCccccccceeEEEeCC--cEEEcCC-CCCccCCCCCchHHHHHHHHHHHHc---CCCHHHHHHH
Confidence 885 99999999999975 667654 6788998 8889999999999999999999999 9999999999
Q ss_pred ccCCcccHHHHHHH-HHHhccccCCCCCChhHHHHHHHHh
Q psy8082 299 NGRGILKELQCLVA-RRVQLEGKNSSERKSNSAFVSWFKN 337 (379)
Q Consensus 299 ~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~~~~~~~ 337 (379)
|+++| +++++.|+.. .|+.+++ .++++.
T Consensus 315 ---------A~~~aa~~v~~~G~~~-~~~~~ev-~~~l~~ 343 (351)
T 2afb_A 315 ---------AAAASCLKHTIPGDFV-VLSIEEI-EKLASG 343 (351)
T ss_dssp ---------HHHHHHHHTTSSSSSC-CCCHHHH-HHHHTC
T ss_pred ---------HHHHHHHHhCCCCCCC-CCCHHHH-HHHHhc
Confidence 99999 9999999875 8998886 455543
No 48
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=3.2e-41 Score=327.14 Aligned_cols=300 Identities=13% Similarity=0.102 Sum_probs=221.4
Q ss_pred CCCCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhc
Q psy8082 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (379)
Q Consensus 12 ~~~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~ 91 (379)
++|+||+++|++++|+.. +.+.....+..+..++||+++|+|+++++||.++.|+|.+|+|.+|+.+++.|++ +
T Consensus 22 ~mm~kv~~~GE~m~~l~p-----~~~~~~~~~~~~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~~l~~~L~~-~ 95 (351)
T 4gm6_A 22 SMMKQVVTIGELLMRLST-----QQGIPFSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKMAVEHLWR-H 95 (351)
T ss_dssp ---CEEEEECCCEEEEEC-----CTTCCGGGCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHHHHHHHH-T
T ss_pred hccCCEEEEcceeEEecC-----CCCCCccccCeEEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHHHHHHH-c
Confidence 456799999999999863 2233445577899999999999999999999999999999999999999999999 9
Q ss_pred CCcccceeeeCCcCceeEEEEEcCCCceeEEecCC--cCCCCCHHHHHHHHhhccCccEEEEeCC------CCHHHHHHH
Q psy8082 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG--ANTYLSASDIDAAKNLLLKAKVIMFQGE------TPWETTLYC 163 (379)
Q Consensus 92 gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~--~~~~l~~~~l~~~~~~l~~~~~v~~~~~------~~~~~~~~~ 163 (379)
||+++++...++.+|+.++...+.++++.+..+.. +...+.+.+++. .+.+++++++|+++. .+.+++.++
T Consensus 96 GVdt~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 174 (351)
T 4gm6_A 96 QVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDWDL-SELLKGIRVLHVSGITIALSTFWLEMVVKI 174 (351)
T ss_dssp TEECTTEEECSSCCCEEEEECCBTTBCCEEEEECTTCHHHHCCCCCCCH-HHHHTTEEEEEEEHHHHHHCHHHHHHHHHH
T ss_pred CCCcccccccCCccceeEEEEccCCcceEEEEccccchhhhCCccccCH-HHHHhhcccceecccchhhchhHHHHHHHH
Confidence 99999998877766665555555555666554332 112222222111 134789999999863 234677889
Q ss_pred HHHhhhhccCCcEEEEecC--CCCCC------CchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHh-----c
Q psy8082 164 LSKLHVSLESRAKIIVNPS--PAVYP------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-----M 230 (379)
Q Consensus 164 ~~~a~~~~~~~~~v~~D~~--~~~~~------~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~-----~ 230 (379)
++.+ +++|++++|||+ +.+|. .+.++++++|++++|++|+..+++...... +..+....... .
T Consensus 175 ~~~a---k~~g~~v~~D~n~r~~lw~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~-~~~~~~~~~~~~~~~~~ 250 (351)
T 4gm6_A 175 IREA---KRNGIKISFDMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETT-DYYQAMHDKYPNIELFY 250 (351)
T ss_dssp HHHH---HHTTCEEEEECCCCTTTSCHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCS-CHHHHHHHHCTTCCEEE
T ss_pred HHHH---HHcCCCcccCCCcCchhhhhhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchh-HHHHHHHhhhhhhhhhh
Confidence 9999 999999999997 44552 345788999999999999999999753332 22222222211 1
Q ss_pred CCCEEEEEecC--CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHH
Q psy8082 231 KCNTVIITLGG--SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQ 308 (379)
Q Consensus 231 g~~~vivT~G~--~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A 308 (379)
+.+..+++.+. .|..++..+ +.++.++++..++||||||||+|+|||+++|++ |+++++|+++ |
T Consensus 251 ~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~VvDttGAGDaF~ag~l~~l~~---g~~~~~al~~---------A 316 (351)
T 4gm6_A 251 ATKRTVISASHHLLQGHLWTQG--ECWESEEYAIYPIVDRVGGGDAYTAAVLHGILS---EWRPDETVKF---------A 316 (351)
T ss_dssp EEEEEEEETTEEEEEEEEEETT--EEEEEEEEEECSCSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------H
T ss_pred ccccceeeeccCCceEEEEeCC--ceEEeCCCCCCCcCCCCChhHHHHHHHHHHHHC---CCCHHHHHHH---------H
Confidence 22334555443 356666666 567777623458999999999999999999999 9999999999 9
Q ss_pred HHHH-HHHhccccCCCCCChhHHHHHHHHhc
Q psy8082 309 CLVA-RRVQLEGKNSSERKSNSAFVSWFKNN 338 (379)
Q Consensus 309 ~~~A-~~v~~~G~~~~~p~~~~~~~~~~~~~ 338 (379)
+++| ++|++.|+.+++|. ++ .++++++.
T Consensus 317 ~aaaal~v~~~Ga~~~~~~-~e-v~~~l~~~ 345 (351)
T 4gm6_A 317 TAAAGLKHSIHGDINPFDE-KT-IADFAADK 345 (351)
T ss_dssp HHHHHHHTTSSSSSCCCCH-HH-HHHHHHC-
T ss_pred HHHHHHHhCCCCCCCCCCH-HH-HHHHHhCC
Confidence 9999 99999999988874 44 46777653
No 49
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=4.9e-39 Score=307.29 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=222.7
Q ss_pred CcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCC-CeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSI 93 (379)
Q Consensus 15 ~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~-~v~lvs~vG~D~~g~~i~~~l~~~~gi 93 (379)
++|+|+|++++|++... . ......+||++.|+|+++++||. ++.++|.+|+| +|+.+++.|++ +||
T Consensus 3 ~~ilviG~~~iD~~~~~------~-----~~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~~~~L~~-~gV 69 (313)
T 3kd6_A 3 LSLLVIGSLAFDDIETP------F-----GRSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEHFDLLHA-KNI 69 (313)
T ss_dssp CCEEEESCCEEEEEECS------S-----CEEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHHHHHHHH-TTE
T ss_pred ccEEEEeEEEEeeecCC------C-----CcccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHHHHHHHH-cCC
Confidence 47999999999998521 1 24578899999999999999999 99999999999 99999999999 999
Q ss_pred cccceeeeCCcCceeEEEE--EcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhc
Q psy8082 94 NTKYIWLLQDVTTGVCSKV--ISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (379)
Q Consensus 94 ~~~~i~~~~~~~T~~~~~~--~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~ 171 (379)
+++++.+.++.+|....-. .+.++++.+....++...+.++. .+.++++|++|+++ .+++...++++.+ +
T Consensus 70 d~~~v~~~~~~~T~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~ 141 (313)
T 3kd6_A 70 DTRGIQVIEDGKTFRWAGRYHYDMNTRDTLDTQLNVFAEFDPHV----PQYYRDSKFVCLGN-IDPELQLKVLDQI---D 141 (313)
T ss_dssp EEEEEEEETTCCCEEEEEEECTTSSCEEEEEEECGGGTTCCCCC----CGGGTTCSEEEECS-SCHHHHHHHHTTC---S
T ss_pred CccceEEcCCCCeeeeeeeeeccccccceeecccchHhhcCccc----hHHHccCCEEEEcC-CCHHHHHHHHHHH---h
Confidence 9999988776677432211 23344555544444444444322 13478999999965 4566667777665 4
Q ss_pred cCCcEEEEecCCC----CCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy8082 172 ESRAKIIVNPSPA----VYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (379)
Q Consensus 172 ~~~~~v~~D~~~~----~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~ 247 (379)
.+.++++||... ..+.+.++++++|++++|++|++.|++. ++..++++.|.++|++.|+||+|++|++++
T Consensus 142 -~~~~v~~Dp~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~-----~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 215 (313)
T 3kd6_A 142 -DPKLVVCDTMNFWIEGKPEELKKVLARVDVFIVNDSEARLLSGD-----PNLVKTARIIREMGPKTLIIKKGEHGALLF 215 (313)
T ss_dssp -SCSEEEEECCHHHHHHCHHHHHHHHTTCSEEEEEHHHHHHHHSC-----SCHHHHHHHHHTTSCSEEEEECTTSCEEEE
T ss_pred -hCCEEEEcChhhhhhhhHHHHHHHHhcCCEEEeCHHHHHHHhCC-----CCHHHHHHHHHHcCCCEEEEeeCCCcEEEE
Confidence 578899999421 1134567899999999999999999997 478888999999999999999999999999
Q ss_pred ecCCCceEEEccCCCc-CcccCCChhHHHHHHHHHHHHhcCCCC-----CHHHHHhhccCCcccHHHHHHH-HHHhcccc
Q psy8082 248 TRDNPRLKTITVDHVE-YPIESEGVGDCFVGALAYYFKAGQKGG-----NLDSCRLRNGRGILKELQCLVA-RRVQLEGK 320 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~vvDttGAGDaF~ag~~~~l~~~~~g~-----~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~ 320 (379)
+++ +.+++|+ +++ +++|||||||+|+|||+++|++ |. ++++|+++ |+++| ++|++.|+
T Consensus 216 ~~~--~~~~~~~-~~~~~vvdttGAGDaf~a~~~~~l~~---g~~~~~~~l~~a~~~---------a~~~aa~~v~~~G~ 280 (313)
T 3kd6_A 216 TDN--GIFAAPA-FPLESIYDPTGAGDTFAGGFIGHLAR---CGNTSEAEMRKAVLY---------GSAMASFCVEQFGP 280 (313)
T ss_dssp ETT--EEEEECC-CTTCCCSCCTTHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHH---------HHHHHHHHTTSSTT
T ss_pred ECC--ceEEeCC-CCCCCcCCCCCccHHHHHHHHHHHHc---CCCccccCHHHHHHH---------HHHHHHHHHeecCC
Confidence 876 6889998 777 7999999999999999999999 88 89999999 99999 99999999
Q ss_pred CCC-CCChhHHH
Q psy8082 321 NSS-ERKSNSAF 331 (379)
Q Consensus 321 ~~~-~p~~~~~~ 331 (379)
.+. .|+.+++.
T Consensus 281 ~~~~~~~~~ev~ 292 (313)
T 3kd6_A 281 YRYNDLDLLEVD 292 (313)
T ss_dssp GGGGTCCHHHHH
T ss_pred CCCCCCCHHHHH
Confidence 763 58888754
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1e-37 Score=296.17 Aligned_cols=262 Identities=13% Similarity=0.126 Sum_probs=212.1
Q ss_pred CCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEE
Q psy8082 34 LPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVI 113 (379)
Q Consensus 34 ~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~ 113 (379)
.|.+++.++...+...+||+++|+|.++++||.++.++|.+|+|. +.+++.|++ +||+++++.. ..+|+.+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~~L~~-~gVd~~~v~~--~~~t~~~~i~- 92 (298)
T 1vk4_A 19 HVSKDVNVVDGKREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFSFLRD-NGVEVVFLKS--PRTTSIENRY- 92 (298)
T ss_dssp CCEEEEEEETTEEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGTTTGG-GTCEEEEEEC--SSCEEEEEEC-
T ss_pred cccCceEeecCeEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHHHHHH-cCCceEEEec--CCCcEEEEEE-
Confidence 334444555667888999999999999999999999999999997 778899999 9999998753 3455555443
Q ss_pred cCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCC----------
Q psy8082 114 SNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSP---------- 183 (379)
Q Consensus 114 ~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~---------- 183 (379)
+++|++++..+.++...+++++++. ..++++|+++..+.+...++++.+ ++.+.++++||++
T Consensus 93 ~~~g~~~~~~~~~~~~~l~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~---~~~g~~v~~D~~~~~~~~~~~~~ 164 (298)
T 1vk4_A 93 GSDPDTRESFLISAADPFTESDLAF-----IEGEAVHINPLWYGEFPEDLIPVL---RRKVMFLSADAQGFVRVPENEKL 164 (298)
T ss_dssp -----CCEEEEEECCCCCCGGGGGG-----CCSSEEEECCSSTTSSCGGGHHHH---HHHCSEEEEETHHHHEEEETTEE
T ss_pred cCCCCeeEEEeccccccCCHHHcCc-----CCCCEEEECCcccccccHHHHHHH---HHcCCEEEEecCccccccccccc
Confidence 5578888877777777888877642 589999997653334445677777 7788999999973
Q ss_pred --CCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCC
Q psy8082 184 --AVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDH 261 (379)
Q Consensus 184 --~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~ 261 (379)
..|+...++++++|++++|++|++.|++.. ++.++++.|.++|++.|+||+ ++|++++++ +.+++|+ +
T Consensus 165 ~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~-----~~~~~~~~l~~~g~~~vvvT~-~~G~~~~~~---~~~~~~~-~ 234 (298)
T 1vk4_A 165 VYRDWEMKEKYLKYLDLFKVDSREAETLTGTN-----DLRESCRIIRSFGAKIILATH-ASGVIVFDG---NFYEASF-R 234 (298)
T ss_dssp EECCCTTHHHHGGGCSEEEEEHHHHHHHHSCS-----CHHHHHHHHHHTTCSSEEEEE-TTEEEEESS---SEEEEEC-C
T ss_pred cccchHHHHhhcccCCEEecCHHHHHHHhCCC-----CHHHHHHHHHhcCCCEEEEEc-CCCcEEEeC---CEEEecc-C
Confidence 233456678999999999999999999973 677888889999999999999 999999876 3788898 8
Q ss_pred CcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082 262 VEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF 331 (379)
Q Consensus 262 ~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~ 331 (379)
+++++|||||||+|+|||+++|++. |+++++|+++ |+++| +++++.|+.+. |+.++++
T Consensus 235 ~v~vvDttGAGDaF~a~~~~~l~~~--g~~~~~a~~~---------A~a~aa~~v~~~G~~~~-~~~~el~ 293 (298)
T 1vk4_A 235 SWSLEGRTGRGDTCTAAFLVGFVFK--KMSIEKATKF---------AAAVTSVKMRHPGPLRR-EDLEAIS 293 (298)
T ss_dssp CSSGGGGTTHHHHHHHHHHHHHHTS--CCCHHHHHHH---------HHHHHHHHTTSSSSCCG-GGGGGCC
T ss_pred CcccCCCcCccHHHHHHHHHHHHHc--CCCHHHHHHH---------HHHHHHHHHccCCCCCC-CCHHHHh
Confidence 8899999999999999999999863 7999999999 99999 99999998875 7777653
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.90 E-value=1.4e-23 Score=200.00 Aligned_cols=214 Identities=18% Similarity=0.192 Sum_probs=158.7
Q ss_pred CeeEEEEecCChhHHHHHHHHhhhcCCcccceeee--CCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhh--
Q psy8082 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLL--QDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNL-- 142 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~--~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~-- 142 (379)
+..++|.+|+|. |+.+ |++ .||+++++... .+ +|+..+ . ....+++++++...+.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~-~GV~~~~v~~~~~~~-~t~~~~-------------~--~g~~l~~~~i~~~~~~~~ 70 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQV-LGFEIDAVNSVQFSN-HTGYAH-------------W--KGQVLNSDELQELYEGLR 70 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHH-TTCEEEEEEEEEESS-CTTSSC-------------C--CEEECCHHHHHHHHHHHH
T ss_pred cccCCCccchHh-hHHH---HHH-cCCeEEEEEEEEecC-CCCcCC-------------c--cCccCCHHHHHHHHHHHH
Confidence 467788999998 9988 999 99999887653 22 333221 1 1135677777654332
Q ss_pred ---ccCccEEEEeCCCC---HHHHHHHHHHhhhhccCCc--EEEEecCCC--------CC---C---Cch-hhcccCeEE
Q psy8082 143 ---LLKAKVIMFQGETP---WETTLYCLSKLHVSLESRA--KIIVNPSPA--------VY---P---LNP-IVMILADII 199 (379)
Q Consensus 143 ---l~~~~~v~~~~~~~---~~~~~~~~~~a~~~~~~~~--~v~~D~~~~--------~~---~---~~~-~ll~~~dil 199 (379)
++++++++++...+ .+.+.++++.+ ++++. ++++||... .| + .+. .+++++|++
T Consensus 71 ~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a---~~~g~~~~vv~Dp~~~~~~~~sg~~~~~~~~~~~l~~~ll~~~dil 147 (312)
T 2yxt_A 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQEL---KQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADII 147 (312)
T ss_dssp HTTCCCCSEEEECCCCCHHHHHHHHHHHHHH---HHHCTTCEEEECCCCEEC--CCCEESSCTTHHHHHHHTTGGGCSEE
T ss_pred hcCCccCCEEEECCCCCHHHHHHHHHHHHHH---HhhCCCCeEEECCCcCCCCCCCCCeeCCHHHHHHHHHHhhhhCCEE
Confidence 67899988755445 34445777777 77664 488998632 11 1 233 378999999
Q ss_pred EeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC------ceEEE-------ecCC---CceEEEccCCCc
Q psy8082 200 CINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS------GVVYA-------TRDN---PRLKTITVDHVE 263 (379)
Q Consensus 200 ~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~------G~~~~-------~~~~---~~~~~~~~~~~~ 263 (379)
+||++|++.|+|....+.++..++++.|.++|++.|+||.|.. |++++ ++++ .+.+++|+ +++
T Consensus 148 ~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 226 (312)
T 2yxt_A 148 TPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDI-RKV 226 (312)
T ss_dssp CCCHHHHHHHHSCCCCSHHHHHHHHHHHHHHSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEEEEEEE-ECC
T ss_pred cCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCCceEEEEEeccccccccccccceEEEee-ccc
Confidence 9999999999998776777888999999999999999998876 47765 3321 14678888 777
Q ss_pred CcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 264 YPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 264 ~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
++ |||||||+|+|+|+++|++. |+++++|+++ |+++| .++++
T Consensus 227 ~v-dttGAGDaf~a~~~~~l~~~--g~~l~~a~~~---------A~a~a~~~v~~ 269 (312)
T 2yxt_A 227 DA-VFVGTGDLFAAMLLAWTHKH--PNNLKVACEK---------TVSTLHHVLQR 269 (312)
T ss_dssp SS-CCSSHHHHHHHHHHHHHHHS--TTCHHHHHHH---------HHHHHHHHHHH
T ss_pred CC-CCCCchHHHHHHHHHHHHhc--CCCHHHHHHH---------HHHHHHHHHHH
Confidence 76 99999999999999999952 6999999999 99999 87754
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.89 E-value=1.4e-22 Score=190.45 Aligned_cols=211 Identities=18% Similarity=0.163 Sum_probs=156.2
Q ss_pred EEEecCChhHHHHHHHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHH----h--hcc
Q psy8082 71 ISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----N--LLL 144 (379)
Q Consensus 71 vs~vG~D~~g~~i~~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~----~--~l~ 144 (379)
+|.+|.|. ....|++ .|+++.++.. . +..+.+|.+.+ . ...+++++++... + .++
T Consensus 27 ~g~~G~d~----~~~~l~~-~Gv~~~~v~t--------~-i~~~~~g~~~~---~--g~~~~~~~~~~~~~~l~~~~~~~ 87 (283)
T 2ddm_A 27 YGSVGNSI----AVPAIKQ-NGLNVFAVPT--------V-LLSNTPHYDTF---Y--GGAIPDEWFSGYLRALQERDALR 87 (283)
T ss_dssp SSSSTHHH----HHHHHHH-TTCCEEEEEE--------E-EESSCTTSSCC---C--EEECCHHHHHHHHHHHHHTTCCT
T ss_pred CCcchHHH----HHHHHHH-cCCeeeEEeE--------E-EeccCCCcCce---e--eeeCCHHHHHHHHHHHHhcCCcc
Confidence 55566652 4568999 9999887742 1 12243454441 1 1346666665421 2 356
Q ss_pred CccEEEEeCCCC---HHHHHHHHHHhhhhcc--CCcEEEEecCCC-----CC---CCc----hhhcccCeEEEeCHHHHH
Q psy8082 145 KAKVIMFQGETP---WETTLYCLSKLHVSLE--SRAKIIVNPSPA-----VY---PLN----PIVMILADIICINEQEAE 207 (379)
Q Consensus 145 ~~~~v~~~~~~~---~~~~~~~~~~a~~~~~--~~~~v~~D~~~~-----~~---~~~----~~ll~~~dil~~N~~E~~ 207 (379)
++++++++...+ .+.+.++++.+ ++ .++++++||... .| +.. ..+++++|++++|+.|++
T Consensus 88 ~~~~v~~G~l~~~~~~~~~~~~l~~a---~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~E~~ 164 (283)
T 2ddm_A 88 QLRAVTTGYMGTASQIKILAEWLTAL---RKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELE 164 (283)
T ss_dssp TCCEEEECCCSCHHHHHHHHHHHHHH---HTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEECCBHHHHH
T ss_pred cCCEEEECCcCCHHHHHHHHHHHHHH---HhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEecCCHHHHH
Confidence 889999876444 34556677777 76 689999998632 12 111 347889999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCC-------ceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHH
Q psy8082 208 IITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS-------GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALA 280 (379)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~-------G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~ 280 (379)
.|+|....+.++..++++++.++|++.|+||.|.+ |+++++++ +.+++++ +++. +|++||||+|+|+|+
T Consensus 165 ~L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~G~~~~~~~--~~~~~~~-~~v~-vdt~GAGDaf~a~~~ 240 (283)
T 2ddm_A 165 ILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTAD--SVNVISH-SRVK-TDLKGTGDLFCAQLI 240 (283)
T ss_dssp HHHTSCCSSHHHHHHHHHHHCCSSCCEEEEEC-------CEEEEEEEETT--EEEEEEE-ECCC-CCCCCHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccccCccCCCceeEEEEeCC--ceEEEee-ceeC-CCCCChHHHHHHHHH
Confidence 99998766667888889999999999999999999 88888876 5778888 6675 899999999999999
Q ss_pred HHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccc
Q psy8082 281 YYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEG 319 (379)
Q Consensus 281 ~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G 319 (379)
++|++ |+++++|+++ |++++ .++++..
T Consensus 241 ~~l~~---g~~~~~A~~~---------A~a~a~~~v~~~~ 268 (283)
T 2ddm_A 241 SGLLK---GKALTDAVHR---------AGLRVLEVMRYTQ 268 (283)
T ss_dssp HHHHT---TCCHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHc---CCCHHHHHHH---------HHHHHHHHHHHHH
Confidence 99999 9999999999 99999 9887654
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.88 E-value=3.5e-22 Score=188.33 Aligned_cols=221 Identities=12% Similarity=0.108 Sum_probs=154.5
Q ss_pred CeeEEEEecCChhHHHHHH-HHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH-HHhhcc
Q psy8082 67 SVALISKLGNDKFGKSYLE-ELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA-AKNLLL 144 (379)
Q Consensus 67 ~v~lvs~vG~D~~g~~i~~-~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~l~ 144 (379)
...+++..|+|.+|..-.. .+.. +.......++.......++... +.. ...++++.+.. +..+++
T Consensus 25 ~~~vl~i~G~D~~ggagi~a~~~~--------~~~~g~~g~~~it~~~~~n~~~-~~~----~~~~~~~~~~~~~~~l~~ 91 (288)
T 1jxh_A 25 RINALTIAGTDPSGGAGIQADLKT--------FSALGAYGCSVITALVAENTCG-VQS----VYRIEPDFVAAQLDSVFS 91 (288)
T ss_dssp CCEEEEEEECCTTSSSHHHHHHHH--------HHHTTCEEEEEEEEEEEEETTE-EEE----EEECCHHHHHHHHHHHHT
T ss_pred CCEEEEEeCcCCCchHHHHHHHHH--------HHHcCCEEeEEeeEEEeecCCC-eee----eeeCCHHHHHHHHHHHHh
Confidence 3578999999988763221 1111 1111112333333333322221 111 22455555432 222233
Q ss_pred --CccEEEEeCCCCHHHHHHHHHHhhhhccCCcE-EEEecCCCC------CC-----Cch-hhcccCeEEEeCHHHHHHh
Q psy8082 145 --KAKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV------YP-----LNP-IVMILADIICINEQEAEII 209 (379)
Q Consensus 145 --~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~-v~~D~~~~~------~~-----~~~-~ll~~~dil~~N~~E~~~l 209 (379)
.+|++++....+.+....+++.+ ++.+.+ +++||.... +. .+. .+++.+|+++||+.|++.|
T Consensus 92 ~~~~~~v~~G~l~~~~~~~~~~~~~---~~~~~~~vvlDp~~~~~~g~~l~~~~~~~~l~~~ll~~~dil~pN~~Ea~~L 168 (288)
T 1jxh_A 92 DVRIDTTKIGMLAETDIVEAVAERL---QRHHVRNVVLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAAL 168 (288)
T ss_dssp TSCCSEEEECCCCSHHHHHHHHHHH---HHTTCCSEEEECCCC------CCCHHHHHHHHHHTGGGCSEEECBHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHH---HHCCCCeEEEcCcccCCCCCccCCHHHHHHHHHHHHhhCcEEcCCHHHHHHH
Confidence 37888887666778888999999 888886 999997542 21 123 3788999999999999999
Q ss_pred hCC-CCCChhhHHHHHHHHHhcCCCEEEEEecCCc-----eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHH
Q psy8082 210 TDM-KINNEEDLADCMEKLLDMKCNTVIITLGGSG-----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYF 283 (379)
Q Consensus 210 ~~~-~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G-----~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l 283 (379)
+|. ...+.++..++++.|.+++++.|+||.|.+| +++++++ +.+++++ ++++++||+||||+|+|+|+++|
T Consensus 169 ~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~--~~~~~~~-~~~~~vdttGAGD~f~a~~~a~l 245 (288)
T 1jxh_A 169 LDAPHARTEQEMLAQGRALLAMGCEAVLMKGGHLEDAQSPDWLFTRE--GEQRFSA-PRVNTKNTHGTGCTLSAALAALR 245 (288)
T ss_dssp HTCCCCCSHHHHHHHHHHHHHTTCSEEEEBC---------CEEECSS--CEEEC----CCCCSCCBTHHHHHHHHHHHHG
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccCCCCCceeEEEEECC--eEEEEec-cccCCCCCCCchHHHHHHHHHHH
Confidence 998 6666678888999999999999999999999 8888765 5788888 78899999999999999999999
Q ss_pred HhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 284 KAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 284 ~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
++ |+++++|+++ |+.++ .++++.
T Consensus 246 ~~---g~~~~~A~~~---------A~a~a~~~v~~~ 269 (288)
T 1jxh_A 246 PR---HRSWGETVNE---------AKAWLSAALAQA 269 (288)
T ss_dssp GG---SSSHHHHHHH---------HHHHHHHHHTTG
T ss_pred Hc---CCCHHHHHHH---------HHHHHHHHHHhh
Confidence 99 9999999999 99999 998765
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.87 E-value=5e-22 Score=183.93 Aligned_cols=219 Identities=15% Similarity=0.136 Sum_probs=155.3
Q ss_pred eEEEEecCChhHHHHH-HHHhhhcCCcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHH-HHhhcc--
Q psy8082 69 ALISKLGNDKFGKSYL-EELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA-AKNLLL-- 144 (379)
Q Consensus 69 ~lvs~vG~D~~g~~i~-~~l~~~~gi~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~l~-- 144 (379)
.+++..|+|.+|..-. ..+.. ++......++.......++...... ...++++.+.. ...+++
T Consensus 3 ~vl~i~G~d~~ggag~~a~~~~--------~~~~~~~g~~~vt~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 69 (258)
T 1ub0_A 3 VALTIAGSDSGGGAGVQADLKV--------FFRFGVYGTSALTLVTAQNTLGVQR-----VHLLPPEVVYAQIESVAQDF 69 (258)
T ss_dssp EEEEEEEEETTSSSHHHHHHHH--------HHHTTCEEEEEEEEEEEEETTEEEE-----EEECCHHHHHHHHHHHHHHS
T ss_pred EEEEEeccCCCchHHHHHHHHH--------HHHhCCEEeEeeeEEEeecCCceeE-----EEeCCHHHHHHHHHHHHcCC
Confidence 5677788887766433 22221 1111222344444444433322111 12355554432 112222
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCC-cEEEEecCCC------CCC-----Cc-hhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPSPA------VYP-----LN-PIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~D~~~~------~~~-----~~-~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..+++++....+.+....+++.+ ++.+ .++++||... ++. .+ ..+++++|+++||+.|++.|+|
T Consensus 70 ~~~~v~~G~l~~~~~~~~~~~~~---~~~~~~~vv~Dp~~~~~~g~~l~~~~~~~~~~~~ll~~~dil~pN~~E~~~L~g 146 (258)
T 1ub0_A 70 PLHAAKTGALGDAAIVEAVAEAV---RRFGVRPLVVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLG 146 (258)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHH---HHTTCCSEEECCCC---------CHHHHHHHHHHTGGGCSEECCBHHHHHHHHC
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCcEEECCeeecCCCCcccChHHHHHHHHhhcccCeEEeCCHHHHHHHhC
Confidence 46788876655667788888888 8878 7999999642 221 22 3578899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCEEEEEecCC-c----eEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhc
Q psy8082 212 MKINNEEDLADCMEKLLDMKCNTVIITLGGS-G----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~-G----~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~ 286 (379)
....+.++..++++.|.++|++.|++|.|.+ | +++++++ +.+++++ ++++++||+||||+|+|+|++++++
T Consensus 147 ~~~~~~~~~~~~a~~l~~~g~~~vvvt~g~~~G~~~~~~~~~~~--~~~~~~~-~~~~~~dt~GaGD~f~a~~~~~l~~- 222 (258)
T 1ub0_A 147 RPIRTLKEAEEAAKALLALGPKAVLLKGGHLEGEEAVDLLATRG--GVLRFSA-PRVHTRNTHGTGCTLSAAIAALLAK- 222 (258)
T ss_dssp SCCCSHHHHHHHHHHHHTTSCSCEEEEEEECC---EEEEEEETT--EEEEEEE-CCCCCSCCTTHHHHHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCceEEEEEeCC--eEEEEec-cccCCCCCCChHHHHHHHHHHHHHc-
Confidence 8776667888899999999999999999998 8 7887765 5788888 7889999999999999999999999
Q ss_pred CCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 287 QKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 287 ~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
|+++++|+++ |+.++ .++++.
T Consensus 223 --g~~~~~a~~~---------a~~~~~~~~~~~ 244 (258)
T 1ub0_A 223 --GRPLAEAVAE---------AKAYLTRALKTA 244 (258)
T ss_dssp --TCCHHHHHHH---------HHHHHHHHHHTC
T ss_pred --CCCHHHHHHH---------HHHHHHHHHHHh
Confidence 9999999999 99999 888653
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.85 E-value=2.2e-20 Score=174.13 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=131.7
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccCCc-EEEEecCCCC--C---------CCch-hhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRA-KIIVNPSPAV--Y---------PLNP-IVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~-~v~~D~~~~~--~---------~~~~-~ll~~~dil~~N~~E~~~l~~ 211 (379)
.+|++++....+.+....+++.+ ++.+. ++++||.... + +.+. ++++++|+++||+.|++.|+|
T Consensus 74 ~~d~v~~G~l~~~~~~~~~~~~~---~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~g 150 (271)
T 2i5b_A 74 GVDAMKTGMLPTVDIIELAAKTI---KEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLSG 150 (271)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHH---HHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHHT
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHhC
Confidence 67899887655677888888888 88888 5999996421 1 1222 577899999999999999999
Q ss_pred CC-CCChhhHHHHHHHHHhcCCCEEEEEecC--Cce----EEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 MK-INNEEDLADCMEKLLDMKCNTVIITLGG--SGV----VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~~-~~~~~~~~~~~~~l~~~g~~~vivT~G~--~G~----~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
.. ..+.++..++++.+.+++++.|++|.|. +|+ ++++++ +.+++++ +.++++||+||||+|+|+|+++|+
T Consensus 151 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~g~~~~~~~~~~~--~~~~~~~-~~~~~~dt~GaGD~f~a~~~~~l~ 227 (271)
T 2i5b_A 151 MDELKTVDDMIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYDGE--TAEVLES-EMIDTPYTHGAGCTFSAAVTAELA 227 (271)
T ss_dssp CCCCCSHHHHHHHHHHHHTTTCSEEEEECGGGSCSSSEEEEEECSS--CEEEEEE-CCCCCSCCBTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCceEEEEEeCC--eEEEEec-cccCCCCCCChHHHHHHHHHHHHH
Confidence 87 6666788889999999999999999999 885 666654 5788888 788999999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhcc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLE 318 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~ 318 (379)
+ |+++++|+.+ |+.++ .++++.
T Consensus 228 ~---g~~~~~A~~~---------A~~~~~~~~~~~ 250 (271)
T 2i5b_A 228 K---GAEVKEAIYA---------AKEFITAAIKES 250 (271)
T ss_dssp T---TCCHHHHHHH---------HHHHHHHHHHTC
T ss_pred c---CCCHHHHHHH---------HHHHHHHHHHHh
Confidence 9 9999999999 99999 998764
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.76 E-value=8.5e-18 Score=158.37 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHhh------ccCccEEEEeCCCCH---HHHHHHHHHhhhhccCC--cEEEEecCC----C--CC-----C
Q psy8082 130 YLSASDIDAAKNL------LLKAKVIMFQGETPW---ETTLYCLSKLHVSLESR--AKIIVNPSP----A--VY-----P 187 (379)
Q Consensus 130 ~l~~~~l~~~~~~------l~~~~~v~~~~~~~~---~~~~~~~~~a~~~~~~~--~~v~~D~~~----~--~~-----~ 187 (379)
.+++++++.+.+. +..+|+++.+.-.+. +.+.++++.+ ++.+ .++++||.- . .+ +
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~~d~v~~G~l~~~~~~~~v~~~l~~~---~~~~~~~~vv~DPVm~~~~~~~~~~~~~~~ 132 (289)
T 3pzs_A 56 VMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQV---KQANPDAWYFCDPVMGHPEKGCIVAPGVAE 132 (289)
T ss_dssp ECCHHHHHHHHHHHHHTTCGGGCCEEEECCCSSHHHHHHHHHHHHHH---HHHCTTCEEEECCCCEETTTEECSCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCccCCCEEEECCCCCHHHHHHHHHHHHHH---HhhCCCCeEEEcCccccCCCCcccCHHHHH
Confidence 3555666554322 358888655433233 3455666666 5544 789999841 1 11 1
Q ss_pred Cch-hhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEec-CCce-------EEEecCCCceEEEc
Q psy8082 188 LNP-IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG-GSGV-------VYATRDNPRLKTIT 258 (379)
Q Consensus 188 ~~~-~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G-~~G~-------~~~~~~~~~~~~~~ 258 (379)
.+. .+++++|+++||..|++.|+|.+..+.++..+++++|.++|++.|+||.| .+|+ ++++++ +.++++
T Consensus 133 ~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~aa~~l~~~g~~~Vvvt~~~~~G~~~~~~~~~~~~~~--~~~~~~ 210 (289)
T 3pzs_A 133 FFCNEALPASDMIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVTAD--DAWHIC 210 (289)
T ss_dssp HHHHTHHHHCSEECCCHHHHHHHHTSCCCSHHHHHHHHHHHHTTSCSEEEECCCGGGSSCTTEEEEEEECSS--CEEEEE
T ss_pred HHHHHhhccCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCEEEEecccCCCCCCCeEEEEEEeCC--eEEEEE
Confidence 222 47889999999999999999998777788999999999999999999985 5786 666665 577777
Q ss_pred cCCCcCc--ccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 259 VDHVEYP--IESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 259 ~~~~~~v--vDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
. +.+++ +|++|+||+|+|+|++++++ |+++++|+++ |+.++ ..+.
T Consensus 211 ~-~~~~~~v~dt~GaGD~f~a~~~~~l~~---g~~~~~A~~~---------A~~~~~~~i~ 258 (289)
T 3pzs_A 211 R-PLVDFGKRQPVGVGDLTSGLLLVNLLK---GEPLDKALEH---------VTAAVYEVML 258 (289)
T ss_dssp E-ECCCCTTSCCTTHHHHHHHHHHHHHHT---TCCHHHHHHH---------HHHHHHHHHH
T ss_pred e-eeecCCCCCCCcHHHHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHHH
Confidence 7 66666 99999999999999999999 9999999999 99876 5544
No 57
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.74 E-value=5.3e-17 Score=153.09 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=124.4
Q ss_pred CccEEEEeCCCC---HHHHHHHHHHhhhhccCCcEEEEecCCC----CCC--------CchhhcccCeEEEeCHHHHHHh
Q psy8082 145 KAKVIMFQGETP---WETTLYCLSKLHVSLESRAKIIVNPSPA----VYP--------LNPIVMILADIICINEQEAEII 209 (379)
Q Consensus 145 ~~~~v~~~~~~~---~~~~~~~~~~a~~~~~~~~~v~~D~~~~----~~~--------~~~~ll~~~dil~~N~~E~~~l 209 (379)
..|.+.+..-.+ .+.+.++++.+ ++.+.++++||... +|. .+.++++.+|+++||..|++.|
T Consensus 77 ~~~aik~G~l~s~~~i~~v~~~l~~~---~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L 153 (291)
T 3mbh_A 77 QFDAIYTGYLGSPRQIQIVSDFIKDF---RQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYL 153 (291)
T ss_dssp CCSEEEECCCSSTTHHHHHHHHHHHH---CCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHH
T ss_pred ccCEEEECCCCCHHHHHHHHHHHHHh---cCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHH
Confidence 678888764323 35556666666 66678999999742 232 2357899999999999999999
Q ss_pred hCCCCC---ChhhHHHHHHHHHhcCCCEEEEEecC-------CceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHH
Q psy8082 210 TDMKIN---NEEDLADCMEKLLDMKCNTVIITLGG-------SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGAL 279 (379)
Q Consensus 210 ~~~~~~---~~~~~~~~~~~l~~~g~~~vivT~G~-------~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 279 (379)
+|.+.. +.++..++++.|.++|++.|+||.|. .|++++++++.+.++++. +.+. +|++|+||+|+|+|
T Consensus 154 ~g~~~~~~~~~~~~~~aa~~L~~~g~~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~-~~~~-~dt~GaGD~f~aai 231 (291)
T 3mbh_A 154 LDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTC-PYLP-AHYPGTGDTFTSVI 231 (291)
T ss_dssp HTCCCCSCCCHHHHHHHHHHHHHTSCSEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEE-SCCG-GGSTTHHHHHHHHH
T ss_pred hCCCCCCCCCHHHHHHHHHHHHhhCCCEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEe-cccC-CCCCChHHHHHHHH
Confidence 998754 56788899999999999999999653 577888764324667887 6665 89999999999999
Q ss_pred HHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 280 AYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 280 ~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+++|++ |+++++|+++ |+.++ ..+..
T Consensus 232 ~a~l~~---g~~l~~A~~~---------A~~~~~~ai~~ 258 (291)
T 3mbh_A 232 TGSLMQ---GDSLPMALDR---------ATQFILQGIRA 258 (291)
T ss_dssp HHHHHT---TCCHHHHHHH---------HHHHHHHHHHT
T ss_pred HHHHHc---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 999999 9999999999 99998 77754
No 58
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.74 E-value=1.8e-17 Score=155.59 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=126.0
Q ss_pred CccEEEEeCCCCHHHHHHHHHHhhhhccC-CcEEEEecCCC----CCC--------CchhhcccCeEEEeCHHHHHHhhC
Q psy8082 145 KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPA----VYP--------LNPIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~D~~~~----~~~--------~~~~ll~~~dil~~N~~E~~~l~~ 211 (379)
..|.+.+..-.+.+....+.+.+ ++. +.++++||... .|. .+.++++.+|+++||..|++.|+|
T Consensus 74 ~~daik~G~l~s~~~i~~v~~~l---~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~g 150 (282)
T 3h74_A 74 HFDQALIGYVGSVALCQQITTYL---EQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLTG 150 (282)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHH---HHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHHT
T ss_pred ccCEEEECCCCCHHHHHHHHHHH---HHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHhC
Confidence 68899887655677777777776 553 68899999522 122 234789999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHh-cCC-CEEEEEecC----CceEEEe-cCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 212 MKINNEEDLADCMEKLLD-MKC-NTVIITLGG----SGVVYAT-RDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~-~g~-~~vivT~G~----~G~~~~~-~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
.+..+.++..++++.|.+ +|+ +.|+||.|. .|+++++ ++ +.++++. +.+. +|++|+||+|+|+|+++|+
T Consensus 151 ~~~~~~~~~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~--~~~~~~~-~~v~-~dt~GaGD~fsaai~a~l~ 226 (282)
T 3h74_A 151 APYQVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAG--HVQYCGA-RRLP-GHYNGTGDTLAAVIAGLLG 226 (282)
T ss_dssp CCCCSSCCHHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTS--CEEEEEE-ECCS-SCCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCC--eEEEEEe-cCCC-CCCcCHHHHHHHHHHHHHH
Confidence 877666788999999999 899 999999984 7888885 43 5677887 5664 8999999999999999999
Q ss_pred hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhc
Q psy8082 285 AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQL 317 (379)
Q Consensus 285 ~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~ 317 (379)
+ |+++++|+++ |+.++ ..++.
T Consensus 227 ~---g~~l~~A~~~---------A~~~~~~ai~~ 248 (282)
T 3h74_A 227 R---GYPLAPTLAR---------ANQWLNMAVAE 248 (282)
T ss_dssp T---TCCHHHHHHH---------HHHHHHHHHHH
T ss_pred C---CCCHHHHHHH---------HHHHHHHHHHH
Confidence 9 9999999999 99987 76653
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.71 E-value=1.6e-16 Score=150.49 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHhhc------cCccEEEEeCCCCHHHHH---HHHHHhhhhccCC------cEEEEecCC----CCC----
Q psy8082 130 YLSASDIDAAKNLL------LKAKVIMFQGETPWETTL---YCLSKLHVSLESR------AKIIVNPSP----AVY---- 186 (379)
Q Consensus 130 ~l~~~~l~~~~~~l------~~~~~v~~~~~~~~~~~~---~~~~~a~~~~~~~------~~v~~D~~~----~~~---- 186 (379)
.++.++++.+.+.+ ..+|+|..+.-.+.+... ++++.. ++.+ .++++||.- ..+
T Consensus 55 ~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~---k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~ 131 (300)
T 3zs7_A 55 RMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEV---RELREKEDKKLTFICDPVMGDDGIMYCKKE 131 (300)
T ss_dssp ECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHH---HHHHHHTTCCCEEEECCCC---------CT
T ss_pred cCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHH---HhhCcCcCCCceEEEccccccCCCeecCHH
Confidence 35555555443222 478887775544555444 444444 4433 689999941 122
Q ss_pred --CCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc----e--EEEecCC-----Cc
Q psy8082 187 --PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG----V--VYATRDN-----PR 253 (379)
Q Consensus 187 --~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G----~--~~~~~~~-----~~ 253 (379)
+.+.++++.+|+++||..|++.|+|.++.+.++..++++.|+++|++.|+||.|..| + +++..++ .+
T Consensus 132 ~~~~~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~aa~~L~~~G~~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~ 211 (300)
T 3zs7_A 132 VLDAYRELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVR 211 (300)
T ss_dssp HHHHHHHHGGGCSEECCCHHHHHHHHSSCCCSHHHHHHHHHHHHHHTCSEEEEEEEC---CCSEEEEEEEECCSTTSCCE
T ss_pred HHHHHHHHhhhCCEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEecCcCCCCCceEEEEEeccccccCCCe
Confidence 123458999999999999999999998888888999999999999999999999988 2 3443220 25
Q ss_pred eEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHh
Q psy8082 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQ 316 (379)
Q Consensus 254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~ 316 (379)
.++++. +.++. |++|+||+|+|+|+++| + |+++++|+++ |+.+. ..+.
T Consensus 212 ~~~~~~-~~v~~-~~~GtGD~fsaal~a~l-~---g~~~~~Av~~---------A~~~v~~~i~ 260 (300)
T 3zs7_A 212 RFSGVV-PYHEG-RYTGTGDVFAACLLAFS-H---SHPMDVAIGK---------SMAVLQELII 260 (300)
T ss_dssp EEEEEE-ECCSS-CBTTHHHHHHHHHHHHH-T---TSCHHHHHHH---------HHHHHHHHHH
T ss_pred EEEEEe-ccCCC-CCcCHHHHHHHHHHHHH-c---CCCHHHHHHH---------HHHHHHHHHH
Confidence 677877 66665 89999999999999999 9 9999999999 99886 5543
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.58 E-value=1.2e-14 Score=135.60 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=106.5
Q ss_pred ccCccEEEEe-CCCC---HHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcc--cCeEEEeCHHHHHHhhC
Q psy8082 143 LLKAKVIMFQ-GETP---WETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI--LADIICINEQEAEIITD 211 (379)
Q Consensus 143 l~~~~~v~~~-~~~~---~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~--~~dil~~N~~E~~~l~~ 211 (379)
++.++++++. |..+ .+.+.++++.+ ++.+.++++||..... +...++++ ++|+++||..|+..|+|
T Consensus 56 ~~~a~~lvi~~G~~~~~~~~~~~~~~~~a---~~~~~pvVlDp~g~~~~~~~~~~~~~ll~~~~~~vitPN~~E~~~L~g 132 (272)
T 1ekq_A 56 AKIAGALVLNIGTLSKESVEAMIIAGKSA---NEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG 132 (272)
T ss_dssp HHHSSEEEEECTTCCHHHHHHHHHHHHHH---HHTTCCEEEECTTBTTBHHHHHHHHHHHHHSCCSEEEECHHHHHHHCC
T ss_pred HHhCCEEEEECCCCCHHHHHHHHHHHHHH---HhcCCeEEEeCCCcCcccchHHHHHHHHccCCCeEECCCHHHHHHHhC
Confidence 5678998885 3333 34566677777 7889999999974321 11235666 89999999999999999
Q ss_pred CC-C--------CChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHH
Q psy8082 212 MK-I--------NNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYY 282 (379)
Q Consensus 212 ~~-~--------~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~ 282 (379)
.. . .+.++..++++.|.++....|++| |..+ ++++++ +.++++. ....+.|++|+||+|+|.+++.
T Consensus 133 ~~~~~~~gvd~~~~~~~~~~aa~~l~~~~~~vVv~~-G~~~-~i~~~~--~~~~~~~-~~~~~~~ttGaGD~lag~iaa~ 207 (272)
T 1ekq_A 133 VTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAIT-GEVD-VIADTS--HVYTLHN-GHKLLTKVTGAGCLLTSVVGAF 207 (272)
T ss_dssp ---------------HHHHHHHHHHHHHHTSEEEEC-SSSE-EEECSS--CEEEECC-CCGGGGGSTTHHHHHHHHHHHH
T ss_pred CCcccccCccCCCCHHHHHHHHHHHHHHcCCEEEEE-CCCC-EEEeCC--EEEEEcC-CCccccCccCchHHHHHHHHHH
Confidence 75 4 344567788888887744455555 8887 455544 5788887 6777789999999999988888
Q ss_pred HHhcCCCCCHHHHHhh
Q psy8082 283 FKAGQKGGNLDSCRLR 298 (379)
Q Consensus 283 l~~~~~g~~l~~A~~~ 298 (379)
+.+ |.++.+|+.+
T Consensus 208 la~---g~~~~~A~~~ 220 (272)
T 1ekq_A 208 CAV---EENPLFAAIA 220 (272)
T ss_dssp HTT---CSSHHHHHHH
T ss_pred Hhc---CCCHHHHHHH
Confidence 888 9999999999
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.1e-13 Score=137.06 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=113.3
Q ss_pred cCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCC------CC--C---Cc-hhhcccCeEEEeCHHHHHHhhC
Q psy8082 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------VY--P---LN-PIVMILADIICINEQEAEIITD 211 (379)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~------~~--~---~~-~~ll~~~dil~~N~~E~~~l~~ 211 (379)
...|+|.++.- ..+....+.+.++..++.+.++++||.-. ++ + .+ +.+++.+|+++||..|++.|+|
T Consensus 90 ~~~daIkiG~l-s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~~~~~~~l~~~Ll~~a~iitPN~~Ea~~L~g 168 (550)
T 3rm5_A 90 MKCNVIKTGML-TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLG 168 (550)
T ss_dssp BCCSEEEECSC-CHHHHHHHHHHHHHHGGGSCEEEECCCC---------CTTHHHHHHHHTGGGCSEECCBHHHHHHHHS
T ss_pred CCCCEEEECCC-CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCCHHHHHHHHHHhhCcceEEecCHHHHHHHhC
Confidence 37899988766 66665555554410044578999999531 11 1 12 2678999999999999999999
Q ss_pred CC--CCChhhHHHHHHHHHhcCC-CEEEEEecCCc--------e--EEEe-cCCCceEEEccCCCcCcccCCChhHHHHH
Q psy8082 212 MK--INNEEDLADCMEKLLDMKC-NTVIITLGGSG--------V--VYAT-RDNPRLKTITVDHVEYPIESEGVGDCFVG 277 (379)
Q Consensus 212 ~~--~~~~~~~~~~~~~l~~~g~-~~vivT~G~~G--------~--~~~~-~~~~~~~~~~~~~~~~vvDttGAGDaF~a 277 (379)
.. ..+.++..++++.|.+++. +.|+||.|..+ + +++. .++ +.++++. +.++.+|++|+||+|+|
T Consensus 169 ~~~~i~~~~d~~~aa~~L~~~g~~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~-~~~~~~~-~~v~~~~t~GtGD~fsa 246 (550)
T 3rm5_A 169 EERKVNGLQDIFQIAKDLAKITKCSNILVKGGHIPWNDEKEKYITDVLFLGAEQ-KFIIFKG-NFVNTTHTHGTGCTLAS 246 (550)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHCCSCEEEEECC-------CCEEEEEEEETTTT-EEEEEEE-ECCCCSCCBTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcccCCCCeEEEEEEEcCCC-eEEEEEe-cCcCCCCCcChhHHHHH
Confidence 74 4566788899999999876 89999998753 3 4554 332 6777888 77788899999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHhh
Q psy8082 278 ALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 278 g~~~~l~~~~~g~~l~~A~~~ 298 (379)
+++++|++ |.++++|+..
T Consensus 247 aiaa~La~---G~~l~eAv~~ 264 (550)
T 3rm5_A 247 AIASNLAR---GYSLPQSVYG 264 (550)
T ss_dssp HHHHHHHT---TCCHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHH
Confidence 99999999 9999999999
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=99.18 E-value=6.7e-11 Score=109.69 Aligned_cols=145 Identities=13% Similarity=0.033 Sum_probs=105.2
Q ss_pred hccCccEEEEeCCCC-HH---HHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcc-cCeEEEeCHHHHHHhhC
Q psy8082 142 LLLKAKVIMFQGETP-WE---TTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI-LADIICINEQEAEIITD 211 (379)
Q Consensus 142 ~l~~~~~v~~~~~~~-~~---~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~-~~dil~~N~~E~~~l~~ 211 (379)
.++.+|++.+..... .+ .+..+++.+ ++.+.++++||..... +....+++ .+++++||..|+..|+|
T Consensus 53 ~~~~~dalvi~~G~~~~~~~~~~~~~~~~a---~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~vITPN~~E~~~L~g 129 (265)
T 1v8a_A 53 MIRLADAVVINIGTLDSGWRRSMVKATEIA---NELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEISALLG 129 (265)
T ss_dssp HHHHCSEEEEECTTCCHHHHHHHHHHHHHH---HHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEEEEEHHHHHHHHH
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHH---HHcCCcEEEcCccccccccCHHHHHHHHHhCCcEEcCCHHHHHHHhC
Confidence 367899999975443 33 455666677 7788999999986322 11123443 38999999999999998
Q ss_pred CCC-----C----ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHH
Q psy8082 212 MKI-----N----NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYY 282 (379)
Q Consensus 212 ~~~-----~----~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~ 282 (379)
... . +.++..++++.+.+++...|++| |..+. +++++ +.+.++. ......+++|+||+|+|.+++.
T Consensus 130 ~~~~~~gvd~~~~~~~~~~~aa~~la~~~~~~Vvlk-G~~d~-i~~~~--~~~~~~~-g~~~~~~~~GtGD~Lsg~iaa~ 204 (265)
T 1v8a_A 130 EEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVT-GAVDY-VSDGR--RTFAVYN-GHELLGRVTGTGCMVAALTGAF 204 (265)
T ss_dssp HHC----------CHHHHHHHHHHHHHHTTSEEEEE-SSSEE-EECSS--CEEEECC-CCGGGGGSTTHHHHHHHHHHHH
T ss_pred CcccccCcCcccccHHHHHHHHHHHHHHhCcEEEEc-CCCcE-EEcCC--EEEEEcC-CCcCcCCccChhHHHHHHHHHH
Confidence 652 1 12567788888888766666766 87764 44444 5777777 5555669999999999999999
Q ss_pred HHhcCCCCCHHHHHhh
Q psy8082 283 FKAGQKGGNLDSCRLR 298 (379)
Q Consensus 283 l~~~~~g~~l~~A~~~ 298 (379)
+.+ |.+ .+|...
T Consensus 205 lA~---g~~-~~Aa~~ 216 (265)
T 1v8a_A 205 VAV---TEP-LKATTS 216 (265)
T ss_dssp HTT---SCH-HHHHHH
T ss_pred Hhc---CCC-HHHHHH
Confidence 999 998 887777
No 63
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=98.91 E-value=1.2e-08 Score=96.38 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=90.1
Q ss_pred ccCccEEEEeCCC--CH---HHHHHHHHHhhhhccCCcEEEEecCCCC-----CCCchhhcccCeEEEeCHHHHHHhhCC
Q psy8082 143 LLKAKVIMFQGET--PW---ETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDM 212 (379)
Q Consensus 143 l~~~~~v~~~~~~--~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~-----~~~~~~ll~~~dil~~N~~E~~~l~~~ 212 (379)
++.+|++.++.-. .. +.+.++++.. + .+.++++|+.... .+.++. +.+++++||..|++.|+|.
T Consensus 109 ~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~---~-~~~pvVlDa~g~~ll~~~~~~l~~--~~~~viTPN~~E~~~L~g~ 182 (310)
T 2r3b_A 109 VEQADVILIGPGLGLDATAQQILKMVLAQH---Q-KQQWLIIDGSAITLFSQGNFSLTY--PEKVVFTPHQMEWQRLSHL 182 (310)
T ss_dssp HHHCSEEEECTTCCSSHHHHHHHHHHHHHC---C-TTCEEEEETHHHHHHHHTTCCCSS--GGGEEEECCHHHHHHHHCC
T ss_pred hccCCEEEEeCCCCCCHHHHHHHHHHHHhc---C-CCCcEEEcCCcchhcccchhhhcC--CCCEEEcCCHHHHHHHhCC
Confidence 5578999997523 22 3334444443 3 5789999995321 011111 5689999999999999998
Q ss_pred CCCChh-hH-HHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCC
Q psy8082 213 KINNEE-DL-ADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGG 290 (379)
Q Consensus 213 ~~~~~~-~~-~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~ 290 (379)
+..+.+ +. .++++++ ++ +|+..| .+.++++ ++ .. ++.. ......+++|+||+++|.+++.+.+ |.
T Consensus 183 ~~~~~~~~~a~~aA~~l---g~--~VvlKG-~~~vi~~-~~-~~-~~~~-~g~~~~~t~GtGD~Lag~Iaa~lA~---g~ 249 (310)
T 2r3b_A 183 PIEQQTLANNQRQQAKL---GS--TIVLKS-HRTTIFH-AG-EP-FQNT-GGNPGMATGGTGDTLAGIIAGFLAQ---FK 249 (310)
T ss_dssp CGGGCCHHHHHHHHHHH---TS--EEEECS-TTCEEEC-SS-SC-EECC-CCCGGGCSTTHHHHHHHHHHHHHHH---SC
T ss_pred CCCcccchHHHHHHHHh---Cc--EEEEeC-CceEEEE-CC-EE-EEEC-CCCCCCCCCChHHHHHHHHHHHHHc---CC
Confidence 654332 44 5666666 43 555566 5666666 32 34 3445 5567789999999985555555568 99
Q ss_pred CHHHHHhh
Q psy8082 291 NLDSCRLR 298 (379)
Q Consensus 291 ~l~~A~~~ 298 (379)
++.+|+..
T Consensus 250 ~~~eA~~~ 257 (310)
T 2r3b_A 250 PTIETIAG 257 (310)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
Confidence 99999999
No 64
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.86 E-value=8.6e-08 Score=88.73 Aligned_cols=156 Identities=10% Similarity=0.037 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeC-CCCH---HHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhc-ccCeE
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQG-ETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVM-ILADI 198 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~-~~~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll-~~~di 198 (379)
+.-.++++.++ .+.++.+++.. -... +.+..+++.+ ++.+.|+++||..... +....++ ..+++
T Consensus 45 M~~~~~e~~e~---~~~a~alvIn~G~l~~~~~~~~~~a~~~a---~~~~~PvVlDPVg~gas~~r~~~~~~Ll~~~~~V 118 (273)
T 3dzv_A 45 MADDPREFPQM---FQQTSALVLNLGHLSQEREQSLLAASDYA---RQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTV 118 (273)
T ss_dssp CCCCGGGHHHH---HTTCSEEEEECCSCCHHHHHHHHHHHHHH---HHTTCCEEEECTTTTSCHHHHHHHHHHHHTCCSE
T ss_pred hcCCHHHHHHH---HHHCCeEEEecCCCChHHHHHHHHHHHHH---HHcCCcEEEchhhcCCcccCHHHHHHHHhcCCcE
Confidence 44456666543 67899999973 3333 3455666667 7889999999975432 1112222 36899
Q ss_pred EEeCHHHHHHhhCCCCC----C-------hh---hHHHHHHHHHhcCC-CEEEEEecCCceEEEecCCCceEEEccCCCc
Q psy8082 199 ICINEQEAEIITDMKIN----N-------EE---DLADCMEKLLDMKC-NTVIITLGGSGVVYATRDNPRLKTITVDHVE 263 (379)
Q Consensus 199 l~~N~~E~~~l~~~~~~----~-------~~---~~~~~~~~l~~~g~-~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~ 263 (379)
++||..|+..|+|.... + .+ +..++++.+.++.. ..|++|-+. - ++++++ +.+.++. ...
T Consensus 119 ItpN~~E~~~L~g~~~~~~GVds~~~~~~~~~~~d~~~aa~~la~~~~~~~VvlkG~~-D-~i~dg~--~~~~~~~-G~~ 193 (273)
T 3dzv_A 119 VKGNLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQ-D-VLVSQE--QVIVLQN-GVP 193 (273)
T ss_dssp EEEEHHHHHHHTTCCCC-------CGGGSHHHHHHHHHHHHHHHHHSTTCEEEEESSS-E-EEECSS--CEEEECC-CCG
T ss_pred ECCCHHHHHHHhCCcccccccccccccchhhhhHHHHHHHHHHHHHhCCeEEEEECCe-e-EEEcCC--EEEEeCC-CCc
Confidence 99999999999997532 1 12 55677888887755 667777532 2 444443 5677766 444
Q ss_pred CcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 264 YPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 264 ~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
..-+++|.||++.|.+++.+.+ |.++.+|+..
T Consensus 194 ~~~~v~GtGc~Ls~~Iaa~lA~---g~~~~~Aa~~ 225 (273)
T 3dzv_A 194 ELDCFTGTGDLVGALVAALLGE---GNAPMTAAVA 225 (273)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHH---TCCHHHHHHH
T ss_pred ccCCcCCchHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 4556799999999999999999 9999999888
No 65
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=98.85 E-value=2.4e-08 Score=92.92 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=107.3
Q ss_pred ccCccEEEEeCCCC-HHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCCh-hhH
Q psy8082 143 LLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNE-EDL 220 (379)
Q Consensus 143 l~~~~~v~~~~~~~-~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~-~~~ 220 (379)
++.+|++.+..-.. .+...++++.+ .+.+.++++|......+.+ ......++++||..|++.|+|....+. ++.
T Consensus 96 l~~~davviGPGlg~~~~~~~~~~~~---l~~~~p~VlDAdal~~~~l-~~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~ 171 (279)
T 3rpz_A 96 EETYRAIAIGPGLPQTESVQQAVDHV---LTADCPVILDAGALAKRTY-PKREGPVILTPHPGEFFRMTGVPVNELQKKR 171 (279)
T ss_dssp SSCCSEEEECTTCCCCHHHHHHHHHH---TTSSSCEEECGGGCCSCCC-CCCSSCEEECCCHHHHHHHHCCCHHHHTTSH
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHH---HhhCCCEEEECCccchhhh-hhccCCEEEecCHHHHHHHhCCCccchHHHH
Confidence 67899999975433 24556777777 6778899999975432111 112457899999999999999764332 356
Q ss_pred HHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhcc
Q psy8082 221 ADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNG 300 (379)
Q Consensus 221 ~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~ 300 (379)
.++++.+.++.-. +|+-.|. +.+++++++ .+++.. .......++|+||+++|.+...+.+ |.++.+|+..
T Consensus 172 ~~aa~~la~~~~~-~VvlKG~-~~vi~~~~g--~~~~~~-~g~~~~at~GtGD~Lag~iaa~lA~---g~~~~~A~~~-- 241 (279)
T 3rpz_A 172 AEYAKEWAAQLQT-VIVLKGN-QTVIAFPDG--DCWLNP-TGNGALAKGGTGDTLTGMILGMLCC---HEDPKHAVLN-- 241 (279)
T ss_dssp HHHHHHHHHHHTS-EEEECST-TCEEECTTS--CEEECC-CCCGGGCSTTHHHHHHHHHHHHHHH---CSSHHHHHHH--
T ss_pred HHHHHHHHHHcCe-EEEEeCC-CcEEECCCc--eEEEeC-CCCCCCCCCChHHHHHHHHHHHHHC---CCCHHHHHHH--
Confidence 6777777765322 4555554 455666553 344444 4556678999999887666666778 9999999998
Q ss_pred CCcccHHHHH----HH-HHHhccccC
Q psy8082 301 RGILKELQCL----VA-RRVQLEGKN 321 (379)
Q Consensus 301 ~~~~~~~A~~----~A-~~v~~~G~~ 321 (379)
|.. ++ ....+.|..
T Consensus 242 -------a~~lh~~Ag~~a~~~~g~~ 260 (279)
T 3rpz_A 242 -------AVYLHGACAELWTDEHSAH 260 (279)
T ss_dssp -------HHHHHHHHHHHHHHHSCTT
T ss_pred -------HHHHHHHHHHHHHHhcCCC
Confidence 753 55 666666643
No 66
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=98.84 E-value=9.8e-09 Score=97.12 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=91.5
Q ss_pred ccCccEEEEeCCC--CH---HHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhh-c-ccCeEEEeCHHHHHHhhCCCC
Q psy8082 143 LLKAKVIMFQGET--PW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIV-M-ILADIICINEQEAEIITDMKI 214 (379)
Q Consensus 143 l~~~~~v~~~~~~--~~---~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~l-l-~~~dil~~N~~E~~~l~~~~~ 214 (379)
++.+|++.++.-. .. +.+.++++.. + .+.++++|+..... .....+ + +.+++++||..|++.|+|...
T Consensus 123 ~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~---~-~~~pvVlDa~g~~ll~~~~~l~L~~~~~viTPN~~E~~~L~g~~~ 198 (311)
T 3bgk_A 123 ITAADVVLMGPGLAEDDLAQTTFDVVWQAI---E-PKQTLIIDGSAINLLAKRKPAIWPTKQIILTPHQKEWERLSGLTI 198 (311)
T ss_dssp HHHCSEEEECTTCCSSHHHHHHHHHHHHHC---C-TTSEEEEETHHHHHHHHCC-CCCSCSCEEEECCSCC-CTTTCCCS
T ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHc---C-CCCeEEEeCChhhhhccChhhcCCCCCEEECCcHHHHHHHhCCCC
Confidence 5578999997522 23 3334444443 3 47899999963210 000011 2 578999999999999999876
Q ss_pred CCh-hhH-HHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCC-CCC
Q psy8082 215 NNE-EDL-ADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQK-GGN 291 (379)
Q Consensus 215 ~~~-~~~-~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~-g~~ 291 (379)
.+. ++. .++++.+.+ + .+|+..| .+.++++ + ...++.. ......+++|+||++ +|++++++. . |.+
T Consensus 199 ~~~~~d~~~~aa~~l~~-g--~~VvlkG-~~~~i~~-~--~~~~~~~-~~~~~~~t~GtGD~L-ag~iaa~lA--~~g~~ 267 (311)
T 3bgk_A 199 PEQIEAATQTALAHFPK-E--TILVAKS-HQTKIYQ-G--QKIGHIQ-VGGPYQATGGMGDTL-AGMIAGFVA--QFHTD 267 (311)
T ss_dssp TTCCHHHHHHHHTTSCT-T--CEEEECS-SSCEEEE-T--TEEEEEC-CCCGGGCSTTHHHHH-HHHHHHHHH--HCCSC
T ss_pred CcchhhHHHHHHHHHhc-C--CEEEEeC-CCeEEEE-C--CEEEEEC-CCCCCCCCCcHHHHH-HHHHHHHHH--ccCCC
Confidence 543 355 667777766 4 3555555 5667776 4 2344455 567778999999997 666666654 1 579
Q ss_pred HHHHHhh
Q psy8082 292 LDSCRLR 298 (379)
Q Consensus 292 l~~A~~~ 298 (379)
+.+|+..
T Consensus 268 ~~eA~~~ 274 (311)
T 3bgk_A 268 RFEVAAA 274 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 67
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=98.81 E-value=2.6e-08 Score=100.08 Aligned_cols=154 Identities=10% Similarity=0.076 Sum_probs=104.3
Q ss_pred CCHHHHHHHHhhccCccEEEEeCCCC-HHHHHHHHH-HhhhhccCCcEEEEecCCCCCCCchhhc---ccCeEEEeCHHH
Q psy8082 131 LSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLS-KLHVSLESRAKIIVNPSPAVYPLNPIVM---ILADIICINEQE 205 (379)
Q Consensus 131 l~~~~l~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~-~a~~~~~~~~~v~~D~~~~~~~~~~~ll---~~~dil~~N~~E 205 (379)
+++++++++.+.++.+|++.++.-.. .+...++++ .+ ++.++++++|+.....-. .+++ +..++++||..|
T Consensus 306 ~~~~~~~~~~~~~~~~davviGpGlg~~~~~~~~~~~~l---~~~~~pvVlDadgl~~l~-~~ll~~~~~~~vlTPN~~E 381 (502)
T 3rss_A 306 FSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFL---KTLEKPAVIDADAINVLD-TSVLKERKSPAVLTPHPGE 381 (502)
T ss_dssp CCGGGHHHHHHHHTTCSEEEECTTCCCSHHHHHHHHHHH---HHCCSCEEECHHHHHTCC-HHHHHHCSSCEEECCCHHH
T ss_pred cchhhHHHHHHHhccCCEEEEeCCCCCCHHHHHHHHHHH---HhcCCCEEEeCcccchhc-HHHHhccCCCEEEeCCHHH
Confidence 45555665555678999999985432 233344444 44 566899999997432101 2333 357999999999
Q ss_pred HHHhhCCCCCCh-hhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHH
Q psy8082 206 AEIITDMKINNE-EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFK 284 (379)
Q Consensus 206 ~~~l~~~~~~~~-~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~ 284 (379)
+..|+|....+. ++ .++++.+.++.- .+|+..|. +.++++++ +.+..+ .....++++|+||+|+|.+++.+.
T Consensus 382 ~~~L~g~~~~~~~~d-~~aa~~la~~~~-~~VvlKG~-~~vi~~~~--~~~~~~--~g~~~~at~GsGD~Lag~iaa~lA 454 (502)
T 3rss_A 382 MARLVKKTVGDVKYN-YELAEEFAKEND-CVLVLKSA-TTIVTDGE--KTLFNI--TGNTGLSKGGSGDVLTGMIAGFIA 454 (502)
T ss_dssp HHHHHTCCHHHHTTC-HHHHHHHHHHHT-SEEEECSS-SEEEECSS--CEEEEC--CCCGGGSSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccchHHH-HHHHHHHHHHcC-CEEEEeCC-CeEEEcCC--EEEEEC--CCCCccccCCchHHHHHHHHHHHh
Confidence 999999753221 34 667777776532 25666665 45566655 344433 345667999999999888888888
Q ss_pred hcCCCCCHHHHHhh
Q psy8082 285 AGQKGGNLDSCRLR 298 (379)
Q Consensus 285 ~~~~g~~l~~A~~~ 298 (379)
+ |.++.+|+..
T Consensus 455 ~---g~~~~~Aa~~ 465 (502)
T 3rss_A 455 Q---GLSPLEASTV 465 (502)
T ss_dssp T---TCCHHHHHHH
T ss_pred C---CCCHHHHHHH
Confidence 9 9999999999
No 68
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=98.40 E-value=2.5e-06 Score=84.18 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=107.3
Q ss_pred EEecCChHHHHHHHHHHCCC-CeeEEEEecCChhHHHHHHHH----------------hhh---cCCcccceeeeCCcCc
Q psy8082 47 EQRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEEL----------------RKY---NSINTKYIWLLQDVTT 106 (379)
Q Consensus 47 ~~~~GG~a~nvA~~l~~LG~-~v~lvs~vG~D~~g~~i~~~l----------------~~~---~gi~~~~i~~~~~~~T 106 (379)
..+.||.|.-+|..++++|. +|.+.+..+....-+.+.+.+ +.+ ...+..+| -+.+.
T Consensus 113 ~~~~GGnA~imAn~La~lg~~~Vi~~~p~~sk~~~~ll~~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I---~Ey~~ 189 (474)
T 3drw_A 113 EERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAYREGDPLKINRI---FEFRK 189 (474)
T ss_dssp EEEEESHHHHHHHHHHHTTCSEEEECCSCCCHHHHTTSCTTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEE---EEECT
T ss_pred eEecCChHHHHHHHHHHcCCCcEEEecCcCCHHHHHhcCCcceeecccCCceeecCchhhhccCCCCCcEEE---EEcCC
Confidence 56799999999999999999 587777776643322221100 000 01122212 12222
Q ss_pred eeEEE-----EEcCCCceeEEecCCcCC-CCC-HHHHH-HHHhhccCccEEEEeCCC---C--------HH---HHHHHH
Q psy8082 107 GVCSK-----VISNKGTHQTNIIPGANT-YLS-ASDID-AAKNLLLKAKVIMFQGET---P--------WE---TTLYCL 164 (379)
Q Consensus 107 ~~~~~-----~~~~~g~~~~~~~~~~~~-~l~-~~~l~-~~~~~l~~~~~v~~~~~~---~--------~~---~~~~~~ 164 (379)
+..+. +..+...|-++..+..+. .+. .+++. .+.+..+.+|.++++|.- . .+ .+.+.+
T Consensus 190 G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~~~~e~i 269 (474)
T 3drw_A 190 GLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAKEDI 269 (474)
T ss_dssp TCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHH
T ss_pred CCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHHHHHHHHH
Confidence 22222 223333444444443343 332 22222 222223479999998621 1 22 233555
Q ss_pred HHhhhhccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCC-----------CCChhhHHHHHHHHH
Q psy8082 165 SKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-----------INNEEDLADCMEKLL 228 (379)
Q Consensus 165 ~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~-----------~~~~~~~~~~~~~l~ 228 (379)
+.. +..+.++-+....... .....+++.+|.+-+|++|+..+.+.- .++.+++.+++.+|+
T Consensus 270 ~~l---~~~~~~iH~E~As~~~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~~lg~~~~s~~~~~~~~i~~v~e~~~~ll 346 (474)
T 3drw_A 270 IEF---KEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGGMIIL 346 (474)
T ss_dssp HHH---HHTTCEEEEECCCCSCHHHHHHHHHHTGGGSSEEEEEHHHHHHHHHHHTCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHh---cCCCCeEEEEeCccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhcCCccchhhhcCCCHHHHHHHHHHHH
Confidence 555 6788999999886543 345678999999999999999987641 224557777777777
Q ss_pred hc-CCCEEEEE
Q psy8082 229 DM-KCNTVIIT 238 (379)
Q Consensus 229 ~~-g~~~vivT 238 (379)
+. +++.+.|.
T Consensus 347 ~~~~l~rIhvH 357 (474)
T 3drw_A 347 DELNFEILQVH 357 (474)
T ss_dssp HHHCCSEEEEE
T ss_pred HHcCCCEEEEE
Confidence 64 77755444
No 69
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=98.27 E-value=2.8e-05 Score=78.64 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHhhccC-ccEEEEeCCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhcc--cCeE
Q psy8082 129 TYLSASDIDAAKNLLLK-AKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI--LADI 198 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~-~~~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll~--~~di 198 (379)
+.-.++++.+ ..+. ++.++++.-. ..+.+..+.+.+ ++.+.|+++||..... +....+++ ..++
T Consensus 292 M~~~~~E~~e---~~~~~~~alvin~G~l~~~~~~~~a~~~a---~~~~~PvVlDPVg~~a~~~r~~~~~~Ll~~~~~~v 365 (540)
T 3nl6_A 292 MSEIQSEVND---LAAIPHATLLLNTGSVAPPEMLKAAIRAY---NDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSC 365 (540)
T ss_dssp CCCCHHHHHH---HTTSTTCEEEEESSCSCCHHHHHHHHHHH---HTTTCCEEEECTTCTTSHHHHHHHHHHTTSCCCSE
T ss_pred hcCCHHHHHH---HHhccCCeEEEeCCCCCHHHHHHHHHHHH---HHcCCCEEEChHHhhcccccHHHHHHHHhhCCCeE
Confidence 4445555554 4667 8999996322 367778888888 8899999999975432 22245666 7899
Q ss_pred EEeCHHHHHHhhCCCC------C-----ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec-----------------C
Q psy8082 199 ICINEQEAEIITDMKI------N-----NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR-----------------D 250 (379)
Q Consensus 199 l~~N~~E~~~l~~~~~------~-----~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~-----------------~ 250 (379)
+++|..|+..|+|... + +.++..++++.+.++.-..|++| |..- ++.++ +
T Consensus 366 ItpN~~E~~~L~g~~~~~~~GVds~~~~~~~d~~~aA~~lA~~~~~vVvlk-G~~D-~I~dg~~~~~~~~~~~~~~~~~~ 443 (540)
T 3nl6_A 366 IKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCT-GEFD-FIADGTIEGKYSLSKGTNGTSVE 443 (540)
T ss_dssp EEECHHHHHHHTTC--------------CCHHHHHHHHHHHHHTTSEEEEC-SSSE-EEEECCGGGBCCSSSCCSSCCTT
T ss_pred ECCCHHHHHHHhCCCcccccccccccccCHHHHHHHHHHHHHHhCCEEEEc-CCCe-EEECCCccccccccccccccccC
Confidence 9999999999999652 1 12566777888887655555554 4433 33444 0
Q ss_pred CCceEEEccCCC-cCcccCCChhHHHHHHHHHHHHhcCCCC---CHHHHHhh
Q psy8082 251 NPRLKTITVDHV-EYPIESEGVGDCFVGALAYYFKAGQKGG---NLDSCRLR 298 (379)
Q Consensus 251 ~~~~~~~~~~~~-~~vvDttGAGDaF~ag~~~~l~~~~~g~---~l~~A~~~ 298 (379)
+.+.+.++. -. .-.-.++|.||++.|.+++.+.. +. ++.+|...
T Consensus 444 ~~~~~~~~~-G~~~~m~~vtGtGc~Lsg~Iaa~la~---~~~~~~~~~Aa~~ 491 (540)
T 3nl6_A 444 DIPCVAVEA-GPIEIMGDITASGCSLGSTIACMIGG---QPSEGNLFHAVVA 491 (540)
T ss_dssp SSCEEEEEC-SCCGGGGSSTTHHHHHHHHHHHHHHT---CCTTCBHHHHHHH
T ss_pred CccEEEECC-CChhhccCccCchHHHHHHHHHHHhc---CcCCCCHHHHHHH
Confidence 124666665 34 22234699999999988888888 77 57777666
No 70
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=98.11 E-value=3.4e-05 Score=70.81 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHhhccCccEEEEeC-CCCHHH---HHHHHHHhhhhccCCcEEEEecCCCCC-----CCchhhc-ccCeEE
Q psy8082 130 YLSASDIDAAKNLLLKAKVIMFQG-ETPWET---TLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVM-ILADII 199 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~~v~~~~-~~~~~~---~~~~~~~a~~~~~~~~~v~~D~~~~~~-----~~~~~ll-~~~dil 199 (379)
.-.+++..++ .+.++.++++. ....+. +..+.+.+ .+.+.|+++||..... +...+++ .+.+++
T Consensus 44 a~~~~E~~e~---~~~a~al~iNiGtl~~~~~~~m~~A~~~A---~~~~~PvVLDPVg~gas~~R~~~~~~ll~~~~~vI 117 (265)
T 3hpd_A 44 AHAEEELEEM---IRLADAVVINIGTLDSGWRRSMVKATEIA---NELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVL 117 (265)
T ss_dssp CCCTTTHHHH---HHHCSEEEEECTTCCHHHHHHHHHHHHHH---HHHTCCEEEECTTBTTBHHHHHHHHHHHHHCCSEE
T ss_pred cCCHHHHHHH---HHHCCeEEEECCCCChHHHHHHHHHHHHH---HHcCCCEEEcCCCCCCcHHHHHHHHHHHhcCCcEE
Confidence 3344555543 45678888873 444443 44455666 7889999999975432 1222332 368999
Q ss_pred EeCHHHHHHhhCCCC---------CChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCC
Q psy8082 200 CINEQEAEIITDMKI---------NNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEG 270 (379)
Q Consensus 200 ~~N~~E~~~l~~~~~---------~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttG 270 (379)
++|..|...|.|... .+.++..++++.+.++.--.|++| |.. -++.+++ +.+.++. -..-.-..+|
T Consensus 118 rgN~sEi~~L~g~~~~~~gvds~~~~~~d~~~~a~~lA~~~~~vVvlk-G~~-d~I~dg~--~~~~~~~-G~~~m~~vtG 192 (265)
T 3hpd_A 118 KGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVT-GAV-DYVSDGR--RTFAVYN-GHELLGRVTG 192 (265)
T ss_dssp EEEHHHHHHHHHHHC----------CHHHHHHHHHHHHHHTTSEEEEE-SSS-EEEECSS--CEEEECC-CCGGGGGSTT
T ss_pred cCCHHHHHHHhcccCCCCCccCccccHHHHHHHHHHHHHHhCCEEEEe-CCC-eEEEcCC--EEEEECC-CChHhhcCCc
Confidence 999999999987532 123566777788877644445554 543 3444444 5666665 3333334589
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 271 VGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 271 AGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
.||...|.+.+.+.+ + ++.+|...
T Consensus 193 tGc~Lsg~iaa~lA~---~-~~~~Aa~~ 216 (265)
T 3hpd_A 193 TGCMVAALTGAFVAV---T-EPLKATTS 216 (265)
T ss_dssp HHHHHHHHHHHHHTT---S-CHHHHHHH
T ss_pred cchHHHHHHHHHHhc---C-ChHHHHHH
Confidence 999976665555555 6 55555555
No 71
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=97.85 E-value=0.00031 Score=69.31 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=99.4
Q ss_pred ecCChHHHHHHHHHHCCCCeeE--EEEecCChhHHHHHHHHhhhcCCcccce-----ee------eCCcCceeEEEEEcC
Q psy8082 49 RFSGKGANQCVAAAKLRASVAL--ISKLGNDKFGKSYLEELRKYNSINTKYI-----WL------LQDVTTGVCSKVISN 115 (379)
Q Consensus 49 ~~GG~a~nvA~~l~~LG~~v~l--vs~vG~D~~g~~i~~~l~~~~gi~~~~i-----~~------~~~~~T~~~~~~~~~ 115 (379)
+.||.+..+|..++.+|.++.+ ++.+|+. +.+.+.. .+|....+ .. ....+...-+++--+
T Consensus 109 ~~GGnA~imAn~la~lg~~~vl~~~~~l~~~-----~~~lf~~-~~i~~p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef~ 182 (455)
T 1ua4_A 109 RMGGQAGIMANLLGGVYGVPVIVHVPQLSRL-----QANLFLD-GPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEFP 182 (455)
T ss_dssp EEESHHHHHHHHHTTTTCCCEEECCSCCCHH-----HHTTSCS-SSEEEEEEETTEEEEECGGGCSCCCCCCEEEEEEEC
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEeCCCCCHH-----HHHhcCC-CCeEeecccCCccccccchhhccCCCCCceEEEEcC
Confidence 8999999999999999999887 7777753 3333331 12211000 00 001111111121112
Q ss_pred CC----------ceeEE-ecCCcCCC--CCHHHHHHHHhhccCccEEEEeCCC------CHHHHHHHHHHhhhhccCCcE
Q psy8082 116 KG----------THQTN-IIPGANTY--LSASDIDAAKNLLLKAKVIMFQGET------PWETTLYCLSKLHVSLESRAK 176 (379)
Q Consensus 116 ~g----------~~~~~-~~~~~~~~--l~~~~l~~~~~~l~~~~~v~~~~~~------~~~~~~~~~~~a~~~~~~~~~ 176 (379)
.| .++++ ..+..+.. ..++..+.+.+...++|.++++|.. ..+.....++........+.+
T Consensus 183 ~G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~~~~ 262 (455)
T 1ua4_A 183 RGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNEREIP 262 (455)
T ss_dssp TTCEETTEECSSCEEEEEECCSSGGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCeecceeccccceeEEecCCCcccCcccHHHHHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCCCce
Confidence 22 22333 22322222 2333222223334669999998731 123333333322101456788
Q ss_pred EEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhhCCC----------C---CChhhHHHHHHHHHhc-CCCEEEE
Q psy8082 177 IIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK----------I---NNEEDLADCMEKLLDM-KCNTVII 237 (379)
Q Consensus 177 v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~~~~----------~---~~~~~~~~~~~~l~~~-g~~~viv 237 (379)
+-++...... ... .+++++|.+-+|++|+..+.+.- . .+..+..+.+.++++. +++.+.|
T Consensus 263 iH~ElAs~~~~~~~~~i~-~ilp~vDSlGmNE~EL~~l~~~lg~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~l~rihv 341 (455)
T 1ua4_A 263 VHLEFAFTPDEKVREEIL-NVLGMFYSVGLNEVELASIMEILGEKKLAKELLAHDPVDPIAVTEAMLKLAKKTGVKRIHF 341 (455)
T ss_dssp EEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHTTSSSSCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCccCHHHHHHHH-hhhccCcccccCHHHHHHHHHHhCCCccccccccCCccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999986543 344 78999999999999998875431 1 1256666777777664 7765544
Q ss_pred E
Q psy8082 238 T 238 (379)
Q Consensus 238 T 238 (379)
.
T Consensus 342 H 342 (455)
T 1ua4_A 342 H 342 (455)
T ss_dssp E
T ss_pred e
Confidence 3
No 72
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.72 E-value=0.00075 Score=66.57 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=96.4
Q ss_pred ecCChHHHHHHHHHHCCCCeeE--EEEecCChhHHHHHHHHhhhcCCcc---------------------cceeeeCCcC
Q psy8082 49 RFSGKGANQCVAAAKLRASVAL--ISKLGNDKFGKSYLEELRKYNSINT---------------------KYIWLLQDVT 105 (379)
Q Consensus 49 ~~GG~a~nvA~~l~~LG~~v~l--vs~vG~D~~g~~i~~~l~~~~gi~~---------------------~~i~~~~~~~ 105 (379)
+.||.|.-+|..++.+|.++.+ ++.+|+. ..+.+.. .+|.. ..+++.-+.+
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s~~-----~~~l~~~-~~i~~p~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey~ 190 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNPKL-----QAELFVD-GPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFP 190 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCCHH-----HHTTSCS-SSEEEEEECSSCEEEECGGGSCCSCCCCEEEEEEEC
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCCHH-----HHHhcCC-CCeeeeeccCCceecccchhhccCCCCcceEEEEcC
Confidence 8999999999999999999877 5555542 3333331 11211 0011000111
Q ss_pred ceeEE-EEEcCCCceeEEecCCcCC--CCCHHHHHHHHhhccCccEEEEeCC----C-------CHHHHHHHHHHhhhh-
Q psy8082 106 TGVCS-KVISNKGTHQTNIIPGANT--YLSASDIDAAKNLLLKAKVIMFQGE----T-------PWETTLYCLSKLHVS- 170 (379)
Q Consensus 106 T~~~~-~~~~~~g~~~~~~~~~~~~--~l~~~~l~~~~~~l~~~~~v~~~~~----~-------~~~~~~~~~~~a~~~- 170 (379)
.+..+ .+..+...|-++..+..+. ...++..+.+.+...+.|.++++|. . ..+.+.++.+.+ ..
T Consensus 191 ~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l-~~l 269 (467)
T 1gc5_A 191 RGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHL-NIL 269 (467)
T ss_dssp SSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHH-HHH
T ss_pred CCCeecceeccCCceEEEecCCCCccccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHH-Hhh
Confidence 11111 1112223333333333333 3334333333344567999999862 1 122233333222 01
Q ss_pred ccCCcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHhh---CCC-------CCChhhHHHHHHHHHhc-CCCE
Q psy8082 171 LESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIIT---DMK-------INNEEDLADCMEKLLDM-KCNT 234 (379)
Q Consensus 171 ~~~~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l~---~~~-------~~~~~~~~~~~~~l~~~-g~~~ 234 (379)
...+.++-+....... ..+ .+++++|.+-+|++|+..+. |.+ ..+..+..+++.++++. +++.
T Consensus 270 ~~~~~~iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l~~~lg~~~l~~~i~~p~v~~v~~~~~~ll~~~~l~r 348 (467)
T 1gc5_A 270 NRYNVKSHFEFAYTANRRVREALV-ELLPKFTSVGLNEVELASIMEIIGDEELAKEVLEGHIFSVIDAMNVLMDETGIER 348 (467)
T ss_dssp HHTTCEEEEECCCCCCHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHTTCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCCeEEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHHHHHcCCCcccccccCCCHHHHHHHHHHHHHhcCCCe
Confidence 3467888898876543 345 88999999999999998543 321 01145566666666653 6764
Q ss_pred E
Q psy8082 235 V 235 (379)
Q Consensus 235 v 235 (379)
+
T Consensus 349 I 349 (467)
T 1gc5_A 349 I 349 (467)
T ss_dssp E
T ss_pred E
Confidence 4
No 73
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.72 E-value=0.00039 Score=68.49 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=99.0
Q ss_pred ecCChHHHHHHHHHHCCCCeeE--EEEecCChhHHHHHHHHhhhcCCcc---------------------cceeeeCCcC
Q psy8082 49 RFSGKGANQCVAAAKLRASVAL--ISKLGNDKFGKSYLEELRKYNSINT---------------------KYIWLLQDVT 105 (379)
Q Consensus 49 ~~GG~a~nvA~~l~~LG~~v~l--vs~vG~D~~g~~i~~~l~~~~gi~~---------------------~~i~~~~~~~ 105 (379)
+.||.|.-+|..++.+|.++.+ ++.+|+ ...+.+.. .+|.. ..+++.-+.+
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~-~~i~~p~~~~g~l~l~~~~e~~~~~~~~iH~I~Ey~ 185 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQLSE-----LQASLFLD-GPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFP 185 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSSCCH-----HHHHTSCS-SSEEEEC------CEECGGGC----CCCEEECCEEC
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCCCCH-----HHHHhcCC-CCeEeeeccCCceeccCchhhccCCCCcceEEEEcC
Confidence 8999999999999999998877 555554 23333331 11110 0111111111
Q ss_pred ceeEE-EEEcCCCceeEEecCCcCC--CCCHHHHHHHHhhccCccEEEEeCCC---C---HHH---HHHHHHHhhhhccC
Q psy8082 106 TGVCS-KVISNKGTHQTNIIPGANT--YLSASDIDAAKNLLLKAKVIMFQGET---P---WET---TLYCLSKLHVSLES 173 (379)
Q Consensus 106 T~~~~-~~~~~~g~~~~~~~~~~~~--~l~~~~l~~~~~~l~~~~~v~~~~~~---~---~~~---~~~~~~~a~~~~~~ 173 (379)
.+..+ .+..+...|-++..+..+. ...++..+.+.+...+.|.++++|.. . .+. ..+-++.. +..
T Consensus 186 ~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L---~~~ 262 (457)
T 1l2l_A 186 RNFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKIL---NDL 262 (457)
T ss_dssp TTCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHH---HHT
T ss_pred CCCeecceecCCCCeEEEEcCCCCCCCcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHh---cCC
Confidence 11111 1222333344444443333 33343333333445679999999842 1 222 22333334 557
Q ss_pred CcEEEEecCCCCC-----CCchhhcccCeEEEeCHHHHHHh---hCCC----------CCChhhHHHHHHHHHhc-CCCE
Q psy8082 174 RAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEII---TDMK----------INNEEDLADCMEKLLDM-KCNT 234 (379)
Q Consensus 174 ~~~v~~D~~~~~~-----~~~~~ll~~~dil~~N~~E~~~l---~~~~----------~~~~~~~~~~~~~l~~~-g~~~ 234 (379)
+.++-+....... ... .+++++|.+-+|++|+..+ .|.+ ..+..+..+.+.++++. +++.
T Consensus 263 ~~~iH~E~As~~~~~l~~~i~-~ilp~vDSlGmNEqELa~l~~~lg~~~l~~~i~~~~~~~v~~v~~~~~~ll~~~~l~r 341 (457)
T 1l2l_A 263 GIRAHLEFAFTPDEVVRLEIV-KLLKHFYSVGLNEVELASVVSVMGEKELAERIISKDPADPIAVIEGLLKLIKETGVKR 341 (457)
T ss_dssp TCEEEEECCCCSSHHHHHHHH-HHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCeEEEEECCcccHHHHHHHH-hhccccccCccCHHHHHHHHHHcCCcccccccccCCccCHHHHHHHHHHHHHhcCCCe
Confidence 8889898876543 345 7899999999999999884 3311 01245566666777664 7764
Q ss_pred E
Q psy8082 235 V 235 (379)
Q Consensus 235 v 235 (379)
+
T Consensus 342 I 342 (457)
T 1l2l_A 342 I 342 (457)
T ss_dssp E
T ss_pred E
Confidence 4
No 74
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=97.56 E-value=0.00042 Score=68.90 Aligned_cols=142 Identities=6% Similarity=-0.013 Sum_probs=87.3
Q ss_pred ccCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCC-----CCCC-
Q psy8082 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDM-----KINN- 216 (379)
Q Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~-----~~~~- 216 (379)
.+.+|++.+..-...+.. ++.+.+ . .. ++++|............++...|++||..|++.|++. +..+
T Consensus 290 ~~~~~a~~iGPGlG~~~~-~l~~~l---~-~~-p~VlDADaL~~~~~~~~~~~~~VlTPh~~E~~rL~g~~~~~v~~~~~ 363 (475)
T 3k5w_A 290 PNLLSAFALGMGLENIPK-DFNRWL---E-LA-PCVLDAGVFYHKEILQALEKEAVLTPHPKEFLSLLNLVGINISMLEL 363 (475)
T ss_dssp CSSCSEEEECTTCSSCCT-THHHHH---H-HS-CEEEEGGGGGSGGGGTTTTSSEEEECCHHHHHHHHHHTSCCCCTTSG
T ss_pred ccCCCEEEEcCCCCCCHH-HHHHHH---h-cC-CEEEECcccCCchhhhccCCCEEECCCHHHHHHHhCCccCCCCcchh
Confidence 367888988632211001 222222 2 24 8999987432211223445678999999999999986 4333
Q ss_pred hhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHH
Q psy8082 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCR 296 (379)
Q Consensus 217 ~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~ 296 (379)
.++..++++.+.++....+|+-.|..- ++++++ +.+..+. ...-..+.|.||+++|.+++.+.+ |.++.+|.
T Consensus 364 ~~d~~~aa~~la~~~g~~~VvlKG~~~-vI~~~~--~~~~~~~--g~~~mat~GtGdvLsg~Iaa~lA~---g~~~~~Aa 435 (475)
T 3k5w_A 364 LDNKLEIARDFSQKYPKVVLLLKGANT-LIAHQG--QVFINIL--GSVALAKAGSGDVLAGLILSLLSQ---NYTPLDAA 435 (475)
T ss_dssp GGSCC--CHHHHHHCTTEEEEECSSSE-EEEETT--EEEEECC--CCGGGCSTTHHHHHHHHHHHHHHT---TCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCC-EEECCC--EEEEECC--CCCCCCCCCHHHHHHHHHHHHHHc---CCCHHHHH
Confidence 234556777787765233444445543 344433 4444443 334457899999999999999999 99999998
Q ss_pred hh
Q psy8082 297 LR 298 (379)
Q Consensus 297 ~~ 298 (379)
..
T Consensus 436 ~~ 437 (475)
T 3k5w_A 436 IN 437 (475)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 75
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=48.75 E-value=15 Score=28.93 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=54.0
Q ss_pred HHHHHHHhhc-cCccEEEEeCCCCHHHHHHHHHHhhhhccCCcEEEEecCCCCC---CCchhhcccCeEEEeCHHHHHHh
Q psy8082 134 SDIDAAKNLL-LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY---PLNPIVMILADIICINEQEAEII 209 (379)
Q Consensus 134 ~~l~~~~~~l-~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~---~~~~~ll~~~dil~~N~~E~~~l 209 (379)
.|...+.... ..++++..+|.++.+.+..+.+.. +..++.++.||..... ..+.+.++.+...++...+.
T Consensus 14 ~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~---~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~--- 87 (119)
T 2fcj_A 14 SDKQKVAAVLNEPVVIVCTNGTISDARLEELADEL---EGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR--- 87 (119)
T ss_dssp HHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHT---TTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC---
T ss_pred HHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHh---cCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc---
Confidence 3444444434 478888888887777777777777 7777777789975432 33446778888888877764
Q ss_pred hCCCCCChhhHHHHH
Q psy8082 210 TDMKINNEEDLADCM 224 (379)
Q Consensus 210 ~~~~~~~~~~~~~~~ 224 (379)
|.+..+++.+.++.
T Consensus 88 -gVE~a~~~~I~~aL 101 (119)
T 2fcj_A 88 -EVAAAPIWHLAQVL 101 (119)
T ss_dssp -STTTSCHHHHHHHH
T ss_pred -CcccCCHHHHHHHH
Confidence 55433444444444
No 76
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=47.67 E-value=68 Score=28.05 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHhhccCccEEEEeCCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE
Q psy8082 128 NTYLSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~ 200 (379)
+...+.+.++... -.++|++.++|+. ..+.+.++++.+ ++...|+++-|... ..+.+.+|.+.
T Consensus 16 dk~~~~~~~~~~~--~~GtD~i~vGGs~gvt~~~~~~~v~~i---k~~~~Pvvlfp~~~-----~~v~~gaD~~l 80 (228)
T 3vzx_A 16 NKDLPDEQLEILC--ESGTDAVIIGGSDGVTEDNVLRMMSKV---RRFLVPCVLEVSAI-----EAIVPGFDLYF 80 (228)
T ss_dssp TSCCCTTHHHHHH--TSSCSEEEECCCSCCCHHHHHHHHHHH---TTSSSCEEEECSCG-----GGCCSCCSEEE
T ss_pred CCCCCHHHHHHHH--HcCCCEEEECCcCCCCHHHHHHHHHHh---hccCCCEEEeCCCH-----HHccccCCEEE
Confidence 3344455666543 5679999998864 678888999998 88899999988753 34567777654
No 77
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=46.93 E-value=54 Score=26.90 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhhccCccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEec-CCCCCCCchhhcccCeEEEeCHHHH
Q psy8082 129 TYLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNP-SPAVYPLNPIVMILADIICINEQEA 206 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~-~~~~~~~~~~ll~~~dil~~N~~E~ 206 (379)
..+..+.+++..+.+.+++-+++-|.. +......+.... ...|.++.+-. ...........+..-|++.+
T Consensus 22 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~----- 93 (187)
T 3sho_A 22 NQTQPEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGL---NSLGIRTTVLTEGGSTLTITLANLRPTDLMIG----- 93 (187)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHH---HHTTCCEEEECCCTHHHHHHHHTCCTTEEEEE-----
T ss_pred HhCCHHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHH---HhcCCCEEEecCCchhHHHHHhcCCCCCEEEE-----
Confidence 346777788777778888888776644 333444444455 55676665544 21110000112222233321
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy8082 207 EIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (379)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G 243 (379)
......+ .+..++++...++|++.+.+|.-...
T Consensus 94 ---iS~sG~t-~~~~~~~~~ak~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 94 ---VSVWRYL-RDTVAALAGAAERGVPTMALTDSSVS 126 (187)
T ss_dssp ---ECCSSCC-HHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred ---EeCCCCC-HHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 1111122 46778888889999999999986544
No 78
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=44.85 E-value=1.2e+02 Score=26.68 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=47.5
Q ss_pred CcCCCCCHHHHHHHHhhccCccEEEEeCCC--CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE
Q psy8082 126 GANTYLSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (379)
Q Consensus 126 ~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~ 200 (379)
.++...+.+.+..+. -.++|++.+++.. ..+.+.++++.+ ++...|+++-|... ..+.+.+|.+.
T Consensus 19 DPdk~~~~~~l~~~~--~~GtDaI~vGgs~gvt~~~~~~~v~~i---k~~~~Piil~p~~~-----~~~~~gaD~il 85 (235)
T 3w01_A 19 DPAKHISDDDLDAIC--MSQTDAIMIGGTDDVTEDNVIHLMSKI---RRYPLPLVLEISNI-----ESVMPGFDFYF 85 (235)
T ss_dssp CTTSCCCHHHHHHHH--TSSCSEEEECCSSCCCHHHHHHHHHHH---TTSCSCEEEECCCS-----TTCCTTCSEEE
T ss_pred CCCCcCCHHHHHHHH--HcCCCEEEECCcCCcCHHHHHHHHHHh---cCcCCCEEEecCCH-----HHhhcCCCEEE
Confidence 345566777776643 5679999998864 678888999998 88889999988743 24566777554
No 79
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=39.44 E-value=22 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCeeEEEE
Q psy8082 54 GANQCVAAAKLRASVALISK 73 (379)
Q Consensus 54 a~nvA~~l~~LG~~v~lvs~ 73 (379)
|..+|..++++|.+|.++-+
T Consensus 18 GlsAA~~lar~g~~v~lie~ 37 (304)
T 4fk1_A 18 GLNASLVLGRARKQIALFDN 37 (304)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEeC
Confidence 45678889999999998864
No 80
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=37.85 E-value=1.5e+02 Score=25.70 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHhh-----ccCccEEEEe-----CCCCHHHHHHHHHHh
Q psy8082 128 NTYLSASDIDAAKNL-----LLKAKVIMFQ-----GETPWETTLYCLSKL 167 (379)
Q Consensus 128 ~~~l~~~~l~~~~~~-----l~~~~~v~~~-----~~~~~~~~~~~~~~a 167 (379)
+..++.++++..... -.++|-|++. +.+..+.+.++++.+
T Consensus 67 dF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a 116 (224)
T 2bdq_A 67 NFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPAT 116 (224)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh
Confidence 444555555543211 2468888884 567788999999888
No 81
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=35.18 E-value=30 Score=32.16 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHH-CC-CCeeEEEE
Q psy8082 51 SGKGANQCVAAAK-LR-ASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~-LG-~~v~lvs~ 73 (379)
|-.|.-+|..|++ .| .+|.++-+
T Consensus 30 G~~Gl~~A~~La~~~G~~~V~vlE~ 54 (405)
T 2gag_B 30 GGHGLATAYFLAKNHGITNVAVLEK 54 (405)
T ss_dssp SHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 4567889999999 89 89988864
No 82
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=32.41 E-value=51 Score=28.21 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|-+|.-+|..|+++|.+|.++-+
T Consensus 12 G~aGl~aA~~la~~g~~v~lie~ 34 (232)
T 2cul_A 12 GFSGAETAFWLAQKGVRVGLLTQ 34 (232)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHCCCCEEEEec
Confidence 44578889999999999999875
No 83
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=27.59 E-value=98 Score=25.13 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHhhccCcc-EEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEE-EeCHHH
Q psy8082 129 TYLSASDIDAAKNLLLKAK-VIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADII-CINEQE 205 (379)
Q Consensus 129 ~~l~~~~l~~~~~~l~~~~-~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil-~~N~~E 205 (379)
..+.+ .+++..+.+.+++ -+++-|.. +......+.... ...|.++.+-............+..-|++ .++.
T Consensus 32 ~~~~~-~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~-- 105 (183)
T 2xhz_A 32 QYINQ-NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATF---ASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISN-- 105 (183)
T ss_dssp GTSSH-HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHH---HTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECS--
T ss_pred HHHHH-HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHH---HhcCceEEEeCchHHhhhhhccCCCCCEEEEEeC--
Confidence 34555 6777666677765 55554432 223333444444 45566554322111000000112222322 2221
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCce
Q psy8082 206 AEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV 244 (379)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~ 244 (379)
...+ .+..++++...++|++.+.+|.....-
T Consensus 106 -------sG~t-~~~~~~~~~ak~~g~~vi~IT~~~~s~ 136 (183)
T 2xhz_A 106 -------SGES-SEITALIPVLKRLHVPLICITGRPESS 136 (183)
T ss_dssp -------SSCC-HHHHHHHHHHHTTTCCEEEEESCTTSH
T ss_pred -------CCCC-HHHHHHHHHHHHCCCCEEEEECCCCCh
Confidence 1122 467788888888999999999866553
No 84
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=26.24 E-value=84 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHCCCCeeEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALIS 72 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs 72 (379)
||-|..+|..|++.|.+|.+++
T Consensus 26 ~gIG~~~a~~L~~~G~~V~~~~ 47 (291)
T 3rd5_A 26 SGLGAVTARELARRGATVIMAV 47 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHHHHHHHCCCEEEEEE
Confidence 6788999999999999877654
No 85
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=25.14 E-value=1.3e+02 Score=25.99 Aligned_cols=45 Identities=13% Similarity=-0.083 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccce
Q psy8082 51 SGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i 98 (379)
||-|..+|..+++.|.+|.+++. +....+.+.+++++ .+.+...+
T Consensus 17 ~GIG~aia~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~-~~~~~~~~ 61 (252)
T 3h7a_A 17 DYIGAEIAKKFAAEGFTVFAGRR--NGEKLAPLVAEIEA-AGGRIVAR 61 (252)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES--SGGGGHHHHHHHHH-TTCEEEEE
T ss_pred chHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHHHh-cCCeEEEE
Confidence 67788999999999999877764 22345567777777 55544444
No 86
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=24.58 E-value=86 Score=26.06 Aligned_cols=101 Identities=10% Similarity=0.010 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhhccCcc-EEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE-eCHHHH
Q psy8082 130 YLSASDIDAAKNLLLKAK-VIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC-INEQEA 206 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~~~-~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~-~N~~E~ 206 (379)
.+.++.+++..+.+.+++ -+++-|.. +......+.... ...+.++.+-............+..-|++. ++..
T Consensus 28 ~l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~s-- 102 (201)
T 3fxa_A 28 VTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSF---NCIERPAVFLTPSDAVHGTLGVLQKEDILILISKG-- 102 (201)
T ss_dssp HSCHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHH---HHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSS--
T ss_pred hcCHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHH---HhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCC--
Confidence 456677777777787773 55555443 233333444444 445665543221111001111222223332 2211
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy8082 207 EIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (379)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G 243 (379)
| .+ .+..++++...++|++.+.+|.-...
T Consensus 103 ----G---~t-~~~~~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 103 ----G---NT-GELLNLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp ----S---CC-HHHHTTHHHHHHHTCEEEEEESCTTS
T ss_pred ----C---CC-HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 1 12 46677788888899999999986544
No 87
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=24.43 E-value=66 Score=28.85 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHCCCCeeEEEE
Q psy8082 53 KGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 53 ~a~nvA~~l~~LG~~v~lvs~ 73 (379)
+|..+|..|++.|.++.++-+
T Consensus 14 aGl~~A~~l~~~g~~v~vie~ 34 (357)
T 4a9w_A 14 SGLSAGYFLRRSGLSYVILDA 34 (357)
T ss_dssp HHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEEC
Confidence 467888899999999998874
No 88
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=24.30 E-value=83 Score=27.49 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCCcccce
Q psy8082 51 SGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi~~~~i 98 (379)
||-|..+|..+++.|.+|.+++.-. ....+.+.+.+++ .+.+...+
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~ 84 (271)
T 4iin_A 39 KGIGAEIAKTLASMGLKVWINYRSN-AEVADALKNELEE-KGYKAAVI 84 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHH-TTCCEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHh-cCCceEEE
Confidence 5668889999999999987765422 2345556667777 66554433
No 89
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.49 E-value=1.8e+02 Score=24.67 Aligned_cols=101 Identities=7% Similarity=0.077 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHhhccC-----ccEEEEeCCC-CHHHHHHHHHHhhhhccCCcEEEEecCCCCCCCchhhcccCeEEE-eC
Q psy8082 130 YLSASDIDAAKNLLLK-----AKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC-IN 202 (379)
Q Consensus 130 ~l~~~~l~~~~~~l~~-----~~~v~~~~~~-~~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~~~~~~ll~~~dil~-~N 202 (379)
.+..+.+++..+.+.+ ++-+++-|.. +......+.... ...+.++.+-............+..-|++. ++
T Consensus 38 ~ld~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l---~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS 114 (220)
T 3etn_A 38 IPVTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTF---CSTGIPSVFLHPSEAQHGDLGILQENDLLLLIS 114 (220)
T ss_dssp CCCCTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHH---HHTTCCEEECCTTGGGBTGGGGCCTTCEEEEEC
T ss_pred hcCHHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHH---HhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEc
Confidence 4556667766666666 6766665543 222333444444 455665544322211101112223333332 22
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHh--cCCCEEEEEecCCc
Q psy8082 203 EQEAEIITDMKINNEEDLADCMEKLLD--MKCNTVIITLGGSG 243 (379)
Q Consensus 203 ~~E~~~l~~~~~~~~~~~~~~~~~l~~--~g~~~vivT~G~~G 243 (379)
. .| .+ .++.++++...+ +|++.+.+|.....
T Consensus 115 ~------SG---~t-~~~i~~~~~ak~~~~Ga~vI~IT~~~~s 147 (220)
T 3etn_A 115 N------SG---KT-REIVELTQLAHNLNPGLKFIVITGNPDS 147 (220)
T ss_dssp S------SS---CC-HHHHHHHHHHHHHCTTCEEEEEESCTTS
T ss_pred C------CC---CC-HHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence 2 12 22 567788888999 99999999975544
No 90
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=23.12 E-value=82 Score=30.79 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHCCCCeeEEEE
Q psy8082 53 KGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 53 ~a~nvA~~l~~LG~~v~lvs~ 73 (379)
+|..+|..|++.|.+|.++-+
T Consensus 54 aGl~aA~~l~~~G~~V~liE~ 74 (523)
T 1mo9_A 54 AGRFGSAYLRAMGGRQLIVDR 74 (523)
T ss_dssp HHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHCCCCEEEEeC
Confidence 467788889999999998875
No 91
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=22.53 E-value=66 Score=28.46 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCCeeEEE
Q psy8082 54 GANQCVAAAKLRASVALIS 72 (379)
Q Consensus 54 a~nvA~~l~~LG~~v~lvs 72 (379)
|..+|..++++|.+|.++-
T Consensus 16 Gl~AA~~la~~g~~v~liE 34 (314)
T 4a5l_A 16 AHTAAIYLGRSSLKPVMYE 34 (314)
T ss_dssp HHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 5677888999999998885
No 92
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=22.36 E-value=1e+02 Score=24.66 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCeeEEEEec--------------------CChhHHHHHHHHhhhcCCc
Q psy8082 54 GANQCVAAAKLRASVALISKLG--------------------NDKFGKSYLEELRKYNSIN 94 (379)
Q Consensus 54 a~nvA~~l~~LG~~v~lvs~vG--------------------~D~~g~~i~~~l~~~~gi~ 94 (379)
|.-.|..|+++|.++.++-.-. .....+.+.+.+++ .|++
T Consensus 13 Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~ 72 (180)
T 2ywl_A 13 GLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARR-YGAE 72 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHH-TTCE
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHH-cCCE
Confidence 6778888999999999997521 12345556667777 7775
No 93
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=22.11 E-value=3.9e+02 Score=23.22 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=36.9
Q ss_pred ccCccEEEEeC--CCCHHHHHHHHHHhhhhccCCcEEEEec-----CCCCCCCchhhcccCeEEE
Q psy8082 143 LLKAKVIMFQG--ETPWETTLYCLSKLHVSLESRAKIIVNP-----SPAVYPLNPIVMILADIIC 200 (379)
Q Consensus 143 l~~~~~v~~~~--~~~~~~~~~~~~~a~~~~~~~~~v~~D~-----~~~~~~~~~~ll~~~dil~ 200 (379)
+...|+|.++= ... + +.++++.+ .+.+++|++-. ....++....+++.||.+.
T Consensus 88 ~~~~dvViIDEaQF~~-~-v~el~~~l---~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFP-D-IVEFCEAM---ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 147 (234)
T ss_dssp HTTCSEEEESSGGGCT-T-HHHHHHHH---HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEE
T ss_pred hccCCEEEEEchhhhh-h-HHHHHHHH---HhCCCEEEEEecccccccCCcccHHHHHHhcccEE
Confidence 46789999861 122 3 77777877 77899988743 3344566778899988865
No 94
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=22.00 E-value=76 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|-.|..+|..|++.|.+|.++-+
T Consensus 15 Gi~Gls~A~~La~~G~~V~vle~ 37 (363)
T 1c0p_A 15 GVIGLSSALILARKGYSVHILAR 37 (363)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHHHHHHHHHHHhCCCEEEEEec
Confidence 55688899999999999998864
No 95
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=21.56 E-value=3.1e+02 Score=21.91 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhccCCcEEEEecCCCCC-CCchhhcccCeEEEe-----CHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q psy8082 157 WETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICI-----NEQEAEIITDMKINNEEDLADCMEKLLDM 230 (379)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~D~~~~~~-~~~~~ll~~~dil~~-----N~~E~~~l~~~~~~~~~~~~~~~~~l~~~ 230 (379)
++.+.++++.+ ++.+..+.+..+.... +....+++..|.+.+ +.+....+.|.. .+.+.+.++.+.+.
T Consensus 18 ~~~~~~l~~~~---~~~g~~~~l~TNG~l~~~~~~~l~~~~d~v~isld~~~~~~~~~~~g~~---~~~i~~~i~~l~~~ 91 (182)
T 3can_A 18 PEFLIDILKRC---GQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDSTVHQTFCDVP---NELILKNIRRVAEA 91 (182)
T ss_dssp HHHHHHHHHHH---HHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSC---SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---HHCCCcEEEECCCCCCHHHHHHHHhhCCEEEEECCCCCHHHHHHHhCCC---HHHHHHHHHHHHhC
Confidence 34445666666 6666666666665432 223344444554443 344455555542 14566666667666
Q ss_pred CCCE
Q psy8082 231 KCNT 234 (379)
Q Consensus 231 g~~~ 234 (379)
+.+.
T Consensus 92 g~~v 95 (182)
T 3can_A 92 DFPY 95 (182)
T ss_dssp TCCE
T ss_pred CCeE
Confidence 5543
No 96
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=21.49 E-value=87 Score=27.42 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHCCCCeeEEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALISK 73 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs~ 73 (379)
|+.|.-+|..+.+.|++|.+++.
T Consensus 29 G~mG~aiA~~~~~~Ga~V~lv~~ 51 (232)
T 2gk4_A 29 GHLGKIITETLLSAGYEVCLITT 51 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 77999999999999999999874
No 97
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=21.09 E-value=98 Score=27.40 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHCCCCeeEEE
Q psy8082 51 SGKGANQCVAAAKLRASVALIS 72 (379)
Q Consensus 51 GG~a~nvA~~l~~LG~~v~lvs 72 (379)
||-|..+|..+++.|.+|.+++
T Consensus 28 ggIG~~la~~l~~~G~~V~~~~ 49 (303)
T 1yxm_A 28 TGIGKAIVKELLELGSNVVIAS 49 (303)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEEe
Confidence 6778999999999999877665
No 98
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=20.16 E-value=1.1e+02 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=27.0
Q ss_pred ccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhh
Q psy8082 266 IESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298 (379)
Q Consensus 266 vDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~ 298 (379)
.|-.|-||..-|-++|+++.+ -.+.+||+..
T Consensus 64 ~DKh~kGd~aEA~iAyAWleG--~is~eEavei 94 (133)
T 1ztd_A 64 VDKHAKGDYAEALIAKAWLMG--LISEREAVEI 94 (133)
T ss_dssp GGTTCHHHHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhc--cccHHHHHHH
Confidence 588999999999999999992 3588999887
Done!