RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8082
(379 letters)
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 245 bits (628), Expect = 2e-79
Identities = 103/275 (37%), Positives = 143/275 (52%), Gaps = 16/275 (5%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
+VVVGS V+ +T V LPKP ETV G FE GKGANQ VAAA+L A VA+I +G
Sbjct: 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVG 60
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
+D FG LE LR+ I+ Y+ ++ TG + G ++ ++PGAN L+ +D
Sbjct: 61 DDAFGDELLENLREEG-IDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPAD 119
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
+DAA L+ A V++ Q E P ET L L + +I+NP+PA ++ L
Sbjct: 120 VDAALELIAAADVLLLQLEIPLETVLAALRAAR---RAGVTVILNPAPARPLPAELLA-L 175
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN---- 251
DI+ NE EA ++T +++ +EED LL VI+TLG G + A+
Sbjct: 176 VDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHV 235
Query: 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
P K VD G GD F+GALA G
Sbjct: 236 PAFKVKAVDTT-------GAGDTFIGALAAALARG 263
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase. This model describes
ribokinase, an enzyme catalyzing the first step in
ribose catabolism. The rbsK gene encoding ribokinase
typically is found with ribose transport genes.
Ribokinase belongs to the carbohydrate kinase pfkB
family (pfam00294). In the wide gulf between the current
trusted (360 bit) and noise (100 bit) cutoffs are a
number of sequences, few of which are clustered with
predicted ribose transport genes but many of which are
currently annotated as if having ribokinase activity.
Most likely some have this function and others do not
[Energy metabolism, Sugars].
Length = 293
Score = 227 bits (580), Expect = 3e-72
Identities = 101/270 (37%), Positives = 153/270 (56%), Gaps = 13/270 (4%)
Query: 21 GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFG 80
GS ++ + LPKP ETV G+ F+ GKGANQ VAAA+L A V++I K+G+D FG
Sbjct: 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFG 60
Query: 81 KSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140
LE L+ I+T+Y+ ++D TG + + G ++ ++ GAN L+ DIDAA+
Sbjct: 61 DELLENLKSNG-IDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAE 119
Query: 141 NLLLKAKVIMFQGETPWETTLYCLS---KLHVSLESRAKIIVNPSPAVYPLNPIVMILAD 197
L+ ++ +++ Q E P ET L K V K+I+NP+PA+ L+ ++ L D
Sbjct: 120 ALIAESDIVLLQLEIPLETVLEAAKIAKKHGV------KVILNPAPAIKDLDDELLSLVD 173
Query: 198 IICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTI 257
II NE EAEI+T +++ +EED EKLL+ VIITLG G + ++D +L I
Sbjct: 174 IITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKL--I 231
Query: 258 TVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
V+ +++ GD F GA A G+
Sbjct: 232 PAFKVK-AVDTTAAGDTFNGAFAVALAEGK 260
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional.
Length = 326
Score = 208 bits (530), Expect = 2e-64
Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 20/295 (6%)
Query: 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISK 73
E D+VVVGS + I YV +P+ ET+ G F + F GKGANQ V A+KL A VA++
Sbjct: 15 EPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGM 74
Query: 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII--PGANTYL 131
+G D FG ++ ++ N +NT ++ ++ +TG + + + T I+ PGAN L
Sbjct: 75 VGTDGFGSDTIKNFKR-NGVNTSFVSRTENSSTG-LAMIFVDTKTGNNEIVIIPGANNAL 132
Query: 132 SASDIDAAKNLLLK-AKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLN- 189
+ +DA + + K ++ Q E P ETTL L + E + NP+PA
Sbjct: 133 TPQMVDAQTDNIQNICKYLICQNEIPLETTLDALKEAK---ERGCYTVFNPAPAPKLAEV 189
Query: 190 PIV---MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246
I+ + + C+NE EA +IT M++ + E ++L + VIITLG +G +
Sbjct: 190 EIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANGCLI 249
Query: 247 ATRDNP--RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRN 299
++N + V +++ G GDCFVG++AY+ G+ +SC+ N
Sbjct: 250 VEKENEPVHVPGKRVK----AVDTTGAGDCFVGSMAYFMSRGKD--LKESCKRAN 298
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 160 bits (406), Expect = 3e-46
Identities = 90/282 (31%), Positives = 129/282 (45%), Gaps = 19/282 (6%)
Query: 16 DIVVVGSCLVEFITY-VQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
D+VV+G V+ I V LP+P ETV G F+ GKGAN VA A+L A VALI +
Sbjct: 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAV 60
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG-ANTYLSA 133
G+D FG+ LEELRK ++T ++ + TTG+ ++ G G A L+
Sbjct: 61 GDDDFGEFLLEELRKEG-VDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTP 119
Query: 134 SDIDAAKNLLLKAKVI---MFQGETPWETTLYCLSKLHVSLESRAKIIV--NPSPAVYPL 188
D+D L A V+ Q E P E L L + + NP PA++
Sbjct: 120 EDLDED--ELAGADVLHISGIQLEIPPEALLAALELAK---AAGVTVSFDLNPRPALWDR 174
Query: 189 NPI--VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246
+ ++ LADI+ NE+EAE++T + EED LL TV++TLG G V
Sbjct: 175 ELLEELLALADILFPNEEEAELLTGL----EEDAEAAAALLLAKGVKTVVVTLGAEGAVV 230
Query: 247 ATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQK 288
T + +++ G GD F G+
Sbjct: 231 FTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKS 272
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional.
Length = 306
Score = 151 bits (385), Expect = 3e-43
Identities = 89/266 (33%), Positives = 148/266 (55%), Gaps = 14/266 (5%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+VV+GS + + +++ P+P ET+ G H++ F GKGANQ VAAA+L A +A I+ +G+
Sbjct: 5 LVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGD 64
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D G+S ++L K I+T + +++ +TGV ++++G + I GAN L+ + +
Sbjct: 65 DSIGESMRQQLAKDG-IDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALV 123
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYC--LSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
+A + L+ A ++ Q ETP ET L ++K H K+I+NP+PA L ++
Sbjct: 124 EAHRELIANADALLMQLETPLETVLAAAKIAKQH-----GTKVILNPAPAR-ELPDELLA 177
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
L DII NE EAE +T +++ +++D A + L TV+ITLG GV + +
Sbjct: 178 LVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQR 237
Query: 255 -KTITVDHVEYPIESEGVGDCFVGAL 279
V +++ GD F GAL
Sbjct: 238 VPGFRVQ----AVDTIAAGDTFNGAL 259
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 141 bits (357), Expect = 3e-39
Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 11/270 (4%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
IVV+G ++ I V+ L E + E+ G GAN VA A+L V I K+
Sbjct: 2 TKIVVIGEANIDLIGRVEGLEG--ELNRVKTVEKGAGGAGANVAVALARLGGEVTFIGKV 59
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G+D FG+ LE L+K ++T Y+ + +D TG+ ++ G N GA L+
Sbjct: 60 GDDNFGEFLLELLKKEG-VDTDYVVIDEDTRTGLALILVDGDGERTINFYRGAAADLTPE 118
Query: 135 DIDAAKNLLLKAKVIMFQGETP---WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPI 191
++ LL A ++ G P E TL L + + + + +P A +
Sbjct: 119 ELPED--LLENADILYLSGSLPLPLPEATLEELIEAAKNGGTFDPNLRDPLWADLEVLLE 176
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
++ LADI+ NE+E E +T KIN+ E+ + K TV++TLG G + D
Sbjct: 177 LLPLADILKPNEEELEALTGEKINDIEEALAALHK-HAKGVKTVVVTLGADGALLVDGDG 235
Query: 252 PRLKTITVDHVEYPIESEGVGDCFVGALAY 281
+ V V+ +++ G GD FV
Sbjct: 236 -EVHVPPVPKVK-VVDTTGAGDAFVAGFLA 263
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 98.8 bits (247), Expect = 1e-23
Identities = 68/285 (23%), Positives = 108/285 (37%), Gaps = 39/285 (13%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D+V +G +V+ P + F + F G AN V A+L VAL++ +G
Sbjct: 1 DVVTIGEVMVDLSP-----PGGGRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVG 55
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQ--TNIIPGANTYLSA 133
+D FG+ L ELR+ ++T ++ + TG+ I G + A + L+
Sbjct: 56 DDPFGRFILAELRREG-VDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTP 114
Query: 134 SDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSKLH-----VSLES--RAKIIVN 180
D+D A L A + G T E L L VS + R K+ +
Sbjct: 115 EDLDEA--ALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLW-S 171
Query: 181 PSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240
A L + + DI+ +E+EAE + + + D A+ L + V++ LG
Sbjct: 172 AEEAREALEEL-LPYVDIVLPSEEEAEALLGDE--DPTDAAERA-LALALGVKAVVVKLG 227
Query: 241 GSGVVYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGALAY 281
G + T P VD G GD F
Sbjct: 228 AEGALVYTGGGRVFVPAYPVEVVDTT-------GAGDAFAAGFLA 265
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 95.1 bits (237), Expect = 3e-22
Identities = 72/287 (25%), Positives = 111/287 (38%), Gaps = 37/287 (12%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
IVV+G+ ++ V P + G H +Q G G N A+L SVAL+S +G+
Sbjct: 2 IVVIGAANIDLRGKVSGSLVPGTSNPG-HVKQSPGGVGRNIAENLARLGVSVALLSAVGD 60
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII-----PGANTYL 131
D G+S LEE K + + + +T + ++ G +++ L
Sbjct: 61 DSEGESILEESEK--AGLNVRGIVFEGRSTASYTAILDKDG----DLVVALADMDIYELL 114
Query: 132 SASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAK--IIVNPSPAVYP-L 188
+ + + L +AK I+ P E Y L AK + V P P L
Sbjct: 115 TPDFLRKIREALKEAKPIVVDANLPEEALEY-------LLALAAKHGVPVAFEPTSAPKL 167
Query: 189 NPIVMILADIICI--NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246
+ +L I + N E E + I N ED + LL VI+TLG GV+
Sbjct: 168 KKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLL 227
Query: 247 ATRDNPRLKTITVDHVEYPIESE-------GVGDCFVGALAYYFKAG 286
++R+ V+ +P G GD FV L G
Sbjct: 228 SSREGG------VETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEG 268
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 279
Score = 87.4 bits (217), Expect = 1e-19
Identities = 73/306 (23%), Positives = 119/306 (38%), Gaps = 62/306 (20%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D+ VVG + I V++ P P E+V + F G N VA AKL S L++ +G
Sbjct: 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVG 60
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII----PGANTYL 131
D G+ YLEELR+ ++T ++ ++ + +TGV I G N I PGA L
Sbjct: 61 EDFHGRLYLEELREEG-VDTSHVRVVDEDSTGVA--FILTDGDD--NQIAYFYPGAMDEL 115
Query: 132 SASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR------------AKIIV 179
+D + A ++ H+S +
Sbjct: 116 EPNDEA---DPDGLADIV------------------HLSSGPGLIELARELAAGGITVSF 154
Query: 180 NPSPAVYPLNPIVMI----LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTV 235
+P + L+ + ADI+ +N+ EAE++ + +E +LA V
Sbjct: 155 DPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGLSEAELAS--------GVRVV 206
Query: 236 IITLGGSGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYFKAGQKGGNLD 293
++TLG G + + + V +++ G GD F Y G +
Sbjct: 207 VVTLGPKGAIVFEDG----EEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGY--DLEE 260
Query: 294 SCRLRN 299
S RL N
Sbjct: 261 SLRLGN 266
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 85.4 bits (212), Expect = 7e-19
Identities = 65/279 (23%), Positives = 112/279 (40%), Gaps = 39/279 (13%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+V G L++FI PE + F + G AN VA A+L A I K+G+
Sbjct: 2 VVCFGEALIDFI--------PEGSGAPETFTKAPGGAPANVAVALARLGGKAAFIGKVGD 53
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKV-ISNKGTHQTNII-PGANTYLSAS 134
D+FG LE L++ ++T+ I T + V + G A L +
Sbjct: 54 DEFGDFLLETLKEAG-VDTRGIQFDPAAPTT-LAFVTLDADGERSFEFYRGPAADLLLDT 111
Query: 135 DIDAAKNLLLKAKVIMF----QGETPWETTLYCLSKLHVSLESRAKIIVNP-------SP 183
+++ LL +A ++ F P + L L L + ++ I +P
Sbjct: 112 ELNPD--LLSEADILHFGSIALASEPSRSALLEL--LEAAKKAGVLISFDPNLRPPLWRD 167
Query: 184 AVYPLNPI--VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
I ++ LADI+ ++++E E++ + E LL V++T G
Sbjct: 168 EEEARERIAELLELADIVKLSDEELELLFGEEDPEEIA-----ALLLLFGLKLVLVTRGA 222
Query: 242 SGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGAL 279
G + T+ + I V+ +++ G GD FV L
Sbjct: 223 DGALLYTKGGVGEVPGIPVE----VVDTTGAGDAFVAGL 257
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 78.4 bits (194), Expect = 3e-16
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 45/295 (15%)
Query: 16 DIVVVGSCLVEFITYVQTLPKP-----------------EETVKGYHFEQRFSGKGANQC 58
D++ +G+ LV+ + V EE + + G AN
Sbjct: 3 DVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTI 62
Query: 59 VAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKG- 117
AA L S A I ++G+DK G L++LR ++T+Y + D TG C+ +++
Sbjct: 63 RGAAALGGSAAFIGRVGDDKLGDFLLKDLRAAG-VDTRYQ-VQPDGPTGTCAVLVTPDAE 120
Query: 118 -THQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQG---ETPWETTLYCLSKLHVSLES 173
T T + GA LS D+D + LL KAK + +G P E L + E+
Sbjct: 121 RTMCTYL--GAANELSPDDLDWS--LLAKAKYLYLEGYLLTVPPEA---ILLAAEHAKEN 173
Query: 174 RAKIIVNPSPAVY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEK 226
KI +N S A + L ++ + DI+ NE+EAE + + D + K
Sbjct: 174 GVKIALNLS-APFIVQRFKEALLELLPYV-DILFGNEEEAEALAE---AETTDDLEAALK 228
Query: 227 LLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAY 281
LL ++C V+IT G G V + + +++ G GD F G Y
Sbjct: 229 LLALRCRIVVITQGAKGAVVVEGGE-VYPVPAIPVEK-IVDTNGAGDAFAGGFLY 281
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in
bacteria and plants, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time. .
Length = 284
Score = 76.6 bits (189), Expect = 9e-16
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 22/271 (8%)
Query: 20 VGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKF 79
VG +++ I V + P + + + G AN VA A+L LI +G+D
Sbjct: 5 VGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAI 64
Query: 80 GKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA 139
G+ L EL ++T +I + + + S + G T I +T + + A
Sbjct: 65 GRLILAELAAEG-VDTSFIVVAPGARSPI-SSITDITGDRATISITAIDTQAAPDSLPDA 122
Query: 140 KNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAK---IIVNPSPAVYPLNPIVMILA 196
+L A ++ G LH++ E+RA+ I ++ + ++ LA
Sbjct: 123 --ILGGADAVLVDGR--QPEA-----ALHLAQEARARGIPIPLDLDGGGLRVLEELLPLA 173
Query: 197 DIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKT 256
D +E T + +E L + V +TLG +G ++ RD L
Sbjct: 174 DHAICSENFLRPNT------GSADDEALELLASLGIPFVAVTLGEAGCLWLERDG-ELFH 226
Query: 257 ITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ VE +++ G GD F GA A+ G
Sbjct: 227 VPAFPVE-VVDTTGAGDVFHGAFAHALAEGM 256
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 61.4 bits (150), Expect = 1e-10
Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 50/258 (19%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
GKG N L V + LG F + E L K I ++ + + T + K
Sbjct: 37 GKGINVARVLKDLGVEVTALGFLG--GFTGDFFEALLKEEGIPDDFVEVAGE--TRINVK 92
Query: 112 VISNKGTHQTNI-IPGANTYLSASDIDA----AKNLLLKAKVIMFQGETP------WETT 160
+ GT +T I PG +S +++A K LL K +++ G P +
Sbjct: 93 IKEEDGT-ETEINEPGP--EISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAE 149
Query: 161 LYCLSKLHVSLESRAKIIVNPSP----AVYPLNPIVMILADIICINEQEAEIITDMKINN 216
L + E A++I++ S A P +I N +E E + + +
Sbjct: 150 L--VRLAR---EKGARVILDTSGEALLAALAAKP------FLIKPNREELEELFGRPLGD 198
Query: 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLKTI-TVDHVEYPIESE 269
EED+ KL++ V+++LG G + T+D P++K + TV
Sbjct: 199 EEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTV---------- 248
Query: 270 GVGDCFVGALAYYFKAGQ 287
G GD V G
Sbjct: 249 GAGDSMVAGFVAGLAQGL 266
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases
that accept a wide variety of substrates, including
carbohydrates and aromatic small molecules, all are
phosphorylated at a hydroxyl group. The superfamily
includes ribokinase, fructokinase, ketohexokinase,
2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase,
the minor 6-phosphofructokinase (PfkB),
inosine-guanosine kinase, and adenosine kinase. Even
though there is a high degree of structural conservation
within this superfamily, their multimerization level
varies widely, monomeric (e.g. adenosine kinase),
dimeric (e.g. ribokinase), and trimeric (e.g THZ
kinase).
Length = 196
Score = 59.4 bits (144), Expect = 2e-10
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 163 CLSKLHVSLESRAKIIVNPSP----AVYPLNPIVMILADIICINEQEAEIITDMKINNEE 218
L L + ++++P P ++ DI+ NE+EAE +T + +
Sbjct: 73 VLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVK 132
Query: 219 DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGA 278
+ A+ LL VI+TLG G + ATR + +++ G GD F+ A
Sbjct: 133 EAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVK--VVDTTGAGDAFLAA 190
Query: 279 LAYYF 283
LA
Sbjct: 191 LAAGL 195
Score = 47.5 bits (113), Expect = 2e-06
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALIS 72
++VVGS LV+ I V LP P V+ E+R G AN VA A+L SV L+
Sbjct: 2 VLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG 57
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 54.9 bits (133), Expect = 2e-08
Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 50/257 (19%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
GKG N A+L A V LG F ++E L I ++ + + T + K
Sbjct: 36 GKGINVARVLARLGAEVVATGFLG--GFTGEFIEALLAEEGIKNDFVEVKGE--TRINVK 91
Query: 112 VISNKGTHQTNI-IPGANTYLSASDIDAAKN----LLLKAKVIMFQGETP------WETT 160
+ + G +T + PG +S +++ LL +++ G P +
Sbjct: 92 IKESSGE-ETELNEPGP--EISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQ 148
Query: 161 LYCLSKLHVSLESRAKIIVNPS----PAVYPLNPIVMILADIICINEQEAEIITDMKINN 216
L ++ + AK+I++ S P +I N +E E + ++
Sbjct: 149 L--IAIAR---KRGAKVILDTSGEALREALAAKP------FLIKPNHEELEELFGRELKT 197
Query: 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLKTI-TVDHVEYPIESE 269
EE++ + +LLD V+++LG G + T++ P+++ + TV
Sbjct: 198 EEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTV---------- 247
Query: 270 GVGDCFVGALAYYFKAG 286
G GD V G
Sbjct: 248 GAGDSMVAGFLAGLARG 264
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose
synthase involved in the biosynthesis of the
lipopolysaccharide (LPS) core precursor
ADP-L-glycero-D-manno-heptose. LPS plays an important
role in maintaining the structural integrity of the
bacterial outer membrane of gram-negative bacteria. RfaE
consists of two domains, a sugar kinase domain,
represented here, and a domain belonging to the
cytidylyltransferase superfamily.
Length = 304
Score = 54.5 bits (132), Expect = 3e-08
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 43/272 (15%)
Query: 47 EQRFSGKGANQCVAA--AKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDV 104
E+ G AN VA A L A V L+ +G+D+ G + L K I+T I + +
Sbjct: 35 EEIRLGGAAN--VANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG-IDTDGI-VDEGR 90
Query: 105 TTGVCSKVISNKGTHQ-----TNIIPGANTYLSASDIDAAKNLLLKAKVIMF----QGET 155
T ++VI+ Q + I+ L +A V++ +G
Sbjct: 91 PTTTKTRVIA--RNQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKG-- 146
Query: 156 PWETTLYCLSKLHV-SLESRAK-----IIVNPSPAVYPLNPIVMILADIICINEQEAEII 209
L+ + +L + A+ ++V+P Y A ++ NE+EA
Sbjct: 147 -------VLTPRVIEALIAAARELGIPVLVDPKGRDYSK----YRGATLLTPNEKEAREA 195
Query: 210 TDMKINNEEDLADCMEKLLDMK-CNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIES 268
+IN++++L EKLL++ +++TLG G+ RD + E +
Sbjct: 196 LGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPAL-AKE-VYDV 253
Query: 269 EGVGDCFVGALAYYFKAGQKGGNL-DSCRLRN 299
G GD + LA A G +L ++ L N
Sbjct: 254 TGAGDTVIATLALALAA---GADLEEAAFLAN 282
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar
kinases. Found in bacteria and archaea, the guanosine
kinase-like group is part of the ribokinase/pfkB sugar
kinase superfamily. Its oligomerization state is unknown
at this time.
Length = 265
Score = 53.6 bits (129), Expect = 4e-08
Identities = 56/272 (20%), Positives = 84/272 (30%), Gaps = 34/272 (12%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
I VVG + + P+P + G GAN V AKL V S LG
Sbjct: 2 IAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGR 61
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D+ G LEEL +T D T I G +
Sbjct: 62 DEIGIQSLEELESGGDKHTVAWR---DKPTRKTLSFIDPNGERTITVPGER-------LE 111
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA 196
D I+ +G+ + T + +I+ +P V ++ +
Sbjct: 112 D------DLKWPILDEGDGVFITAAAVDKEAIRKCRETKLVILQVTPRV-RVDEL----- 159
Query: 197 DIICINEQEAEIITDMKINNEEDLA--DCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
+A I D+ I + D EK+ +I+T G G + R
Sbjct: 160 -------NQALIPLDILIGSRLDPGELVVAEKIAGPFPRYLIVTEGELGAILYPGG--RY 210
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ + P +S G GD F Y G
Sbjct: 211 NHVPAKKAKVP-DSTGAGDSFAAGFIYGLLKG 241
>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme
metabolism].
Length = 281
Score = 52.3 bits (126), Expect = 1e-07
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-----LGGSGVVYATR 249
LADII N E EI+T +N +D KL V++T +G
Sbjct: 136 LADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLG 195
Query: 250 DNPRLKTITVDHVEYPIESE--GVGDCFVGALA 280
+ L H+ + G GD F L
Sbjct: 196 KSAELAW----HISPLVPFIPNGTGDLFSALLL 224
>gnl|CDD|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional.
Length = 345
Score = 52.3 bits (126), Expect = 2e-07
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 37/250 (14%)
Query: 68 VALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKG-THQTNIIPG 126
V + +G+D+F + L+E + + + + + TG C+ ++ K + N+ G
Sbjct: 83 VCYVGCVGDDRFAE-ILKEAAEKDGVEMLFEYT-TKAPTGTCAVLVCGKERSLVANL--G 138
Query: 127 ANTYLSASDID--AAKNLLLKAKVIMFQG---ETPWETTLY-----CLSKLHVSLESRAK 176
A +LSA + A + + A++ +G L S L A
Sbjct: 139 AANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAP 198
Query: 177 IIVNPSPAVYPLNPIVMIL--ADIICINEQEAEIITDMKINNEEDLADCMEKLLDM---- 230
I + ++ +L DI+ NE+EA+ + EDL + ++ +
Sbjct: 199 FISQ-----FFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYS 253
Query: 231 --KCNTVIITLGGSGVVYATRDNPRLKTITVDHV--EYPIESEGVGDCFVGA-LAYYFKA 285
+ V+ T G + AT+D + ++ V + E +++ G GD FVG LA Y
Sbjct: 254 GTRPRLVVFTQGPEPTLIATKDG--VTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYA-- 309
Query: 286 GQKGGNLDSC 295
G ++D C
Sbjct: 310 --NGKDIDRC 317
>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase.
Length = 330
Score = 51.9 bits (125), Expect = 2e-07
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 47/286 (16%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+V G L++F+ V + E F++ G AN V ++L S A I K+G+
Sbjct: 13 VVCFGEMLIDFVPTVSGVSLAEAPA----FKKAPGGAPANVAVGISRLGGSSAFIGKVGD 68
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQ----TNIIPGANTYLS 132
D+FG + L+K N +N + + T + + + G + N P A+ L
Sbjct: 69 DEFGHMLADILKK-NGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRN--PSADMLLR 125
Query: 133 ASDIDAAKNLLLKAKVIMFQG----ETPWETTLYCLSKLHVSLESRAK---IIVNPSPAV 185
S++D +L+ KAK+ + P + H++ AK +++ P +
Sbjct: 126 ESELD--LDLIRKAKIFHYGSISLITEPCRSA-------HLAAMKIAKEAGALLSYDPNL 176
Query: 186 -YPLNP--------IVMI--LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNT 234
PL P I+ I ADII ++++E E +T ++ +D D + KL
Sbjct: 177 RLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLT--GGDDPDD--DTVVKLWHPNLKL 232
Query: 235 VIITLGGSGVVYATRD-NPRLKTITVDHVEYPIESEGVGDCFVGAL 279
+++T G G Y T+D R++ V +++ G GD FVG L
Sbjct: 233 LLVTEGEEGCRYYTKDFKGRVEGFKVK----AVDTTGAGDAFVGGL 274
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 51.1 bits (123), Expect = 3e-07
Identities = 50/248 (20%), Positives = 90/248 (36%), Gaps = 37/248 (14%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
GKG N L V + LG G+ ++ L+ I ++ + D T + K
Sbjct: 37 GKGINVARVLKDLGIPVTALGFLGGFT-GEFFVALLKDEG-IPDAFVEVKGD--TRINVK 92
Query: 112 VISNKGTHQTNII-PGANTYLSASDIDA----AKNLLLKAKVIMFQGETP------WETT 160
++ + +T I PG +S ++++ K LL +++ G P
Sbjct: 93 ILDEEDGEETEINFPGP--EISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAE 150
Query: 161 LYCLSKLHVSLESRAKIIVNPSP----AVYPLNPIVMILADIICINEQEAEIITDMKINN 216
L + L + AK+I++ S A P ++ N +E E + ++
Sbjct: 151 L--IRILR---QQGAKVILDTSGEALLAALEAKPWLIK------PNREELEALFGRELTT 199
Query: 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESE-GVGDCF 275
ED+ +LL VI++LG G + T + + + S G GD
Sbjct: 200 LEDVIKAARELLAEGIENVIVSLGADGALLVTAE----GVYFASPPKVQVVSTVGAGDSM 255
Query: 276 VGALAYYF 283
V
Sbjct: 256 VAGFLAGL 263
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a
key role in the synthesis of the active coenzyme
pyridoxal-5'-phosphate (PLP), by catalyzing the
phosphorylation of the precursor vitamin B6 in the
presence of Zn2+ and ATP. Mammals are unable to
synthesize PLP de novo and require its precursors in the
form of vitamin B6 (pyridoxal, pyridoxine, and
pyridoxamine) from their diet. Pyridoxal kinase encoding
genes are also found in many other species including
yeast and bacteria.
Length = 254
Score = 50.7 bits (122), Expect = 3e-07
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 191 IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
+++ LADII N+ E E++T KIN+ ED L TV++T V A D
Sbjct: 132 LLVPLADIITPNQFELELLTGKKINDLEDAKAAARALHAKGPKTVVVT----SVELA--D 185
Query: 251 NPRLKTITVD-----HVEYP-IESE----GVGDCFVGALA 280
+ R++ + V+ P I G GD F L
Sbjct: 186 DDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLL 225
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 50.7 bits (122), Expect = 4e-07
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 33/245 (13%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
G AN V A+L I ++G+D FG+ ++++ + ++T Y+ L T S
Sbjct: 29 GAPANVAVGIARLGGESGFIGRVGDDPFGR-FMQQTLQDEGVDTTYLRLDPAHRT---ST 84
Query: 112 VI---SNKG----THQTNIIPGANTYLSASDI-DAAKNLLLKAKVIMFQGETPWETTLYC 163
V+ ++G T P A+ +L D+ + L I E TT
Sbjct: 85 VVVDLDDQGERSFTFMVR--PSADLFLQPQDLPPFRQGEWLHLCSIALSAEPSRSTTFEA 142
Query: 164 LSKL-----HVSLESRAKIIVNPSPAVYPLNPIVM---ILADIICINEQEAEIITDMKIN 215
+ ++ VS + + + A L + LAD++ ++E+E ++
Sbjct: 143 MRRIKAAGGFVSFDPNLREDLWQDEAE--LRECLRQALALADVVKLSEEELCFLSG---- 196
Query: 216 NEEDLADCMEKLLD-MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDC 274
L D + L D +++TLG GV+ TR ++ V+ P+++ G GD
Sbjct: 197 -TSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQ--VQHFPAPSVD-PVDTTGAGDA 252
Query: 275 FVGAL 279
FV L
Sbjct: 253 FVAGL 257
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 50.7 bits (122), Expect = 5e-07
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 27/211 (12%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
GKG N L V + LG F ++E L + I T ++ + + V K
Sbjct: 36 GKGINVSRVLKNLGVDVVALGFLG--GFTGDFIEALLREEGIKTDFVRVPGETRINV--K 91
Query: 112 VISNKGTHQTNI-IPGANTYLSASDIDAAKN----LLLKAKVIMFQGETP--WETTLYC- 163
+ GT +T + PG +S +++A L + ++ G P Y
Sbjct: 92 IKEPSGT-ETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAE 148
Query: 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA----DIICINEQEAEIITDMKINNEED 219
L L E AK+I++ S + +I N++E E + ++ E+
Sbjct: 149 LIALAR--EKGAKVILDTS------GEALRDGLKAKPFLIKPNDEELEELFGRELKTLEE 200
Query: 220 LADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
+ + +LLD+ V+I+LG G + T++
Sbjct: 201 IIEAARELLDLGAENVLISLGADGALLVTKE 231
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
LA +I N EAE +T KI ED+ + +KLL++ V+I GG
Sbjct: 119 LATLITPNLPEAEALTGRKIKTLEDMKEAAKKLLELGAKAVLIK-GG 164
>gnl|CDD|232823 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine kinase. This
model represents phosphomethylpyrimidine kinase, the
ThiD protein of thiamine biosynthesis. The protein is
commonly observed within operons containing other
thiamine biosynthesis genes. Numerous examples are
fusion proteins with other thiamine-biosynthetic
domains. Saccaromyces has three recent paralogs, two of
which are isofunctional and score above the trusted
cutoff. The third shows a longer branch length in a
phylogenetic tree and scores below the trusted cutoff,
as do putative second copies in a number of species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 254
Score = 44.6 bits (106), Expect = 3e-05
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
LA +I N EAE + KI E+D+ +KL ++ V+I GG
Sbjct: 127 LATLITPNLPEAEALLGTKIRTEQDMIKAAKKLRELGPKAVLIK-GG 172
>gnl|CDD|211599 TIGR00687, pyridox_kin, pyridoxal kinase. E. coli has an enzyme
PdxK that acts in vitro as a
pyridoxine/pyridoxal/pyridoxamine kinase, but mutants
lacking PdxK activity retain a specific pyridoxal
kinase, PdxY. PdxY acts in the salvage pathway of
pyridoxal 5'-phosphate biosynthesis. Mammalian forms of
pyridoxal kinase are more similar to PdxY than to PdxK.
The PdxK isozyme is omitted from the seed alignment but
scores above the trusted cutoff.ThiD and related
proteins form an outgroup [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridoxine].
Length = 286
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255
ADII N+ E E++T KIN E+ + L+ M + V++T RD
Sbjct: 139 ADIITPNQFELELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRD-FEGL 197
Query: 256 TITVD---HVEYPI-----ESEGVGDCFVGALAYYFKAG 286
+T + H+ P+ + G GD L G
Sbjct: 198 VVTQEGRWHISRPLAVFMRQPVGTGDLIAALLLATLLHG 236
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
LA +I N EAE++T ++I EED+ + LL + V+I GG
Sbjct: 128 LATLITPNLPEAELLTGLEIATEEDMMKAAKALLALGAKAVLIK-GG 173
>gnl|CDD|180561 PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/
hydroxy-phosphomethylpyrimidine kinase; Reviewed.
Length = 266
Score = 41.6 bits (99), Expect = 3e-04
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEK----LLDMKCNTVIITLGG 241
LA +I N EAE +T + I + E D M+ L + C V+I GG
Sbjct: 133 LATLITPNLPEAEALTGLPIADTE---DEMKAAARALHALGCKAVLIK-GG 179
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine
kinase [Coenzyme metabolism].
Length = 263
Score = 40.6 bits (96), Expect = 6e-04
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 195 LADIICINEQEAEIITD-MKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248
LA ++ N EAE ++ KI EED+ + + L ++ V+I GG A
Sbjct: 132 LATVVTPNLPEAEALSGLPKIKTEEDMKEAAKLLHELGAKAVLIK-GGHLEGEAV 185
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in
bacteria, YegV-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 289
Score = 40.5 bits (95), Expect = 8e-04
Identities = 53/277 (19%), Positives = 88/277 (31%), Gaps = 32/277 (11%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
++V+G+ +V+ + V LP ++ G G N VAA++L LGN
Sbjct: 2 VLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGN 60
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDV---TTGVCSKVISNKGTHQTNIIPGANTYLSA 133
+ + +R I LL G ++ G I GA S
Sbjct: 61 GNWADQIRQAMRD-EGIEI----LLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWST 115
Query: 134 SDIDAAKNLLLKAKVIMFQGETPWETTLY--CLSKLHVSLESRAKIIVNPSPAVYPLNPI 191
+ + G T L + +L + ++ +P P + +
Sbjct: 116 EWFATLT--VAPYDYVYLSGYTLASENASKVILLEWLEALPAGTTLVFDPGPRISDIPDT 173
Query: 192 ----VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY- 246
+M I N +EA I + E A + V++ LG +G
Sbjct: 174 ILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYAKTAA---PVVVRLGSNGAWIR 230
Query: 247 ----ATRDNPRLKTITVDHVEYPIESEGVGDCFVGAL 279
T P K VD + G GD G +
Sbjct: 231 LPDGNTHIIPGFKVKAVD-------TIGAGDTHAGGM 260
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 41.0 bits (96), Expect = 9e-04
Identities = 67/319 (21%), Positives = 117/319 (36%), Gaps = 72/319 (22%)
Query: 14 EADIVVVGSCLVEFITYVQTLPKPE-ETVKGYHFEQRFS---------GKGANQCVAAAK 63
E D+ +G+ V+ + V LP P E K Y E S G N +AAA+
Sbjct: 72 EIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGGNCNFAIAAAR 131
Query: 64 LRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNI 123
L + I +G++ +GK L+ L + I+ + L++ G S +++T +
Sbjct: 132 LGLRCSTIGHVGDEIYGKFLLDVLAE-EGISV--VGLIEGTDAGDSS-----SASYETLL 183
Query: 124 I------PGANTYLSASDI-------------DAAKNLLLKAKVIMFQG----ETPWETT 160
+ + S +D AK + ++K + G E
Sbjct: 184 CWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAI 243
Query: 161 LYCLSKLHVSLESRAKIIVNPSPAVYPL----NPIVMIL------ADIICINEQEAEIIT 210
+ +++ + +P P L L +D++ + +EAE +T
Sbjct: 244 ASAVD---YAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALT 300
Query: 211 DMKINNEEDLADCMEKLLDMKCNT--VIITLGGSGVVYATRDN----PRLKTITVDHVEY 264
I N ++LL T V++ +G G + TR + P K VD V
Sbjct: 301 G--IRNPILAG---QELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTV-- 353
Query: 265 PIESEGVGDCFVGALAYYF 283
G GD F A+A +
Sbjct: 354 -----GCGDSFAAAIALGY 367
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 39.3 bits (91), Expect = 0.003
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
G +A A L VA + KLG+D +G++ L L N + T+ + + T V +
Sbjct: 244 GSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYL-NVNKVQTRSVCIDGKRATAVSTM 302
Query: 112 VISNKGTHQTNII-PGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVS 170
I+ +G +T + P A LS S+I+ +L +AK+ F + + T+ S
Sbjct: 303 KIAKRGRLKTTCVKPCAEDSLSKSEINID--VLKEAKMFYFNTHSLLDPTM-------RS 353
Query: 171 LESRAKIIVNPSPAV--YPLN-PI---------------VMILADIICINEQEAEIITDM 212
RA I V Y LN P+ LADII + +QE E + +
Sbjct: 354 TTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGI 413
Query: 213 KINNEEDLAD 222
+ E D D
Sbjct: 414 EPTEEFDTKD 423
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 37.6 bits (88), Expect = 0.008
Identities = 65/267 (24%), Positives = 103/267 (38%), Gaps = 43/267 (16%)
Query: 52 GKGANQCVAA--AKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVC 109
G AN VA A L A V L+ +G+D+ GK LE L I+T + +D T
Sbjct: 48 GGAAN--VARNIASLGARVFLVGVVGDDEAGKR-LEALLAEEGIDTSGLIRDKDRPTTTK 104
Query: 110 SKVISNKGTHQT-----NIIPGANTYLSASDIDAAKNLLLKAKVIMF----QGETPWETT 160
++V++ Q N L A + A + L A ++ +G
Sbjct: 105 TRVLA--RNQQLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKG------V 156
Query: 161 LYCLSKLHVSLESRAK---IIVNPSP---AVYPLNPIVMILADIICINEQEAEIITDMKI 214
L V +R ++V+P + Y A +I N +EAE
Sbjct: 157 LTPRVVQEVIAAARKHGKPVLVDPKGKDFSRYRG-------ATLITPNRKEAEAAVG-AC 208
Query: 215 NNEEDLADCMEKLL-DMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGD 273
+ E +L EKLL ++ +++T G+ TR+ + Y + G GD
Sbjct: 209 DTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDV--TGAGD 266
Query: 274 CFVGALAYYFKAGQKGGNL-DSCRLRN 299
+ LA A G +L ++CRL N
Sbjct: 267 TVIATLALALAA---GASLEEACRLAN 290
>gnl|CDD|183513 PRK12413, PRK12413, phosphomethylpyrimidine kinase; Provisional.
Length = 253
Score = 36.6 bits (85), Expect = 0.014
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVII 237
+I N EAE+++ +I ED+ + +KL D+ V+I
Sbjct: 129 YVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLYDLGAKAVVI 171
>gnl|CDD|182165 PRK09954, PRK09954, putative kinase; Provisional.
Length = 362
Score = 36.4 bits (84), Expect = 0.018
Identities = 55/263 (20%), Positives = 99/263 (37%), Gaps = 38/263 (14%)
Query: 45 HFEQRFSGKGANQCVAA----------AKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94
+ Q S G C A A L V L+S +G+D +G++ LEE R+
Sbjct: 77 RYPQAASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVNV 136
Query: 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTY----LSASDIDAAKNLLLKAKVIM 150
+ I L T+ + I+N+ ++ +T+ L+ ++ +++L+ A V++
Sbjct: 137 SGCIRLHGQSTSTYLA--IANR--QDETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVL 192
Query: 151 FQGE-TP----WETTLYCLSKLHVSL--ESRAKIIVNPSPAVYPLNPIVMILADIICINE 203
T W TL + V E +A I + ++ L P +
Sbjct: 193 ADCNLTAEALEWVFTLADEIPVFVDTVSEFKAGKIKHWLAHIHTLKP-----------TQ 241
Query: 204 QEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE 263
E EI+ I ++ D + L + + L V + +D + H
Sbjct: 242 PELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTT 301
Query: 264 YPIESEGVGDCFVGALAYYFKAG 286
++S G D F+ L Y F G
Sbjct: 302 --VDSFGADDGFMAGLVYSFLEG 322
>gnl|CDD|240372 PTZ00344, PTZ00344, pyridoxal kinase; Provisional.
Length = 296
Score = 36.2 bits (84), Expect = 0.022
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
++ AD+I N+ EA +++ +++ + D + ++ + V+IT
Sbjct: 136 LIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQGIPVVVIT 182
>gnl|CDD|180840 PRK07105, PRK07105, pyridoxamine kinase; Validated.
Length = 284
Score = 36.0 bits (84), Expect = 0.024
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 196 ADIICINEQEAEIITDM----KINNEEDLADCMEKLLDMKCNTVIIT-----LGGSGVVY 246
AD+I N EA ++ D K +EE++ + KL D+ VIIT G GV Y
Sbjct: 138 ADVITPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAY 197
Query: 247 ATRDNPRLKTITVDHVEYPIESEGVGDCF 275
R R V P G GD F
Sbjct: 198 YDRATDRF--WKVFCKYIPAHYPGTGDIF 224
>gnl|CDD|215529 PLN02978, PLN02978, pyridoxal kinase.
Length = 308
Score = 34.7 bits (80), Expect = 0.064
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 192 VMILADIICINEQEAEIITDMKINNEED-LADCMEKLLDMKCNTVIIT 238
V+ LA ++ N+ EAE +T ++I EED C L + V+IT
Sbjct: 146 VVPLATMLTPNQFEAEQLTGIRIVTEEDAREAC-AILHAAGPSKVVIT 192
>gnl|CDD|183722 PRK12750, cpxP, periplasmic repressor CpxP; Reviewed.
Length = 170
Score = 32.5 bits (74), Expect = 0.18
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 278 ALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSA 330
A A+ K KGG+ C + RGI+++L A++ QL+ R++N A
Sbjct: 23 AFAFGGKGDHKGGD-GECGMGMDRGIMRQLDLTDAQKEQLK----EMREANRA 70
>gnl|CDD|238921 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found
only in bacteria, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 277
Score = 32.4 bits (74), Expect = 0.31
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
V+ D++ IN+ EA +T +L +L M +II G G + T D
Sbjct: 160 VLAKVDVVIINDGEARQLT-----GAANLVKAARLILAMGPKALIIKRGEYGALLFTDDG 214
Query: 252 ----PRLKTITVDHVEYPIES----EGVGDCFVGALAYYFKA 285
P YP+ES G GD F G Y +
Sbjct: 215 YFAAP----------AYPLESVFDPTGAGDTFAGGFIGYLAS 246
>gnl|CDD|236297 PRK08573, PRK08573, phosphomethylpyrimidine kinase; Provisional.
Length = 448
Score = 32.0 bits (73), Expect = 0.55
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 184 AVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
AV L ++ LA ++ N EAE +T MKI + ED + +++ ++ GG
Sbjct: 119 AVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKYIVEELGAEAVVVKGG 176
>gnl|CDD|235561 PRK05686, fliG, flagellar motor switch protein G; Validated.
Length = 339
Score = 31.3 bits (72), Expect = 0.75
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 22/81 (27%)
Query: 127 ANTYLSASDIDAAKNLLLKA-----------KVIMFQGETPWETTLYCLSKLHVSLESRA 175
A Y+ ID A++LL KA +++ G + ++ L K + + A
Sbjct: 73 AGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDF----LRK--MDPQQLA 126
Query: 176 KIIVNPSPAVYPLNPIVMILA 196
I N P I +IL+
Sbjct: 127 NFIRNEHPQT-----IALILS 142
>gnl|CDD|185171 PRK15263, PRK15263, putative fimbrial protein StaE; Provisional.
Length = 196
Score = 30.5 bits (69), Expect = 0.91
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 103 DVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKN 141
V G C+ + + + I + Y+ S+++A
Sbjct: 34 TVEMGTCTAQLVDDSDTPISTIAFGDVYI--SELNAKTK 70
>gnl|CDD|240075 cd04724, Tryptophan_synthase_alpha, Ttryptophan synthase (TRPS)
alpha subunit (TSA). TPRS is a bifunctional tetrameric
enzyme (2 alpha and 2 beta subunits) that catalyzes the
last two steps of L-tryptophan biosynthesis. Alpha and
beta subunit catalyze two distinct reactions which are
both strongly stimulated by the formation of the
complex. The alpha subunit catalyzes the cleavage of
indole 3-glycerol phosphate (IGP) to indole and
d-glyceraldehyde 3-phosphate (G3P). Indole is then
channeled to the active site of the beta subunit, a
PLP-dependent enzyme that catalyzes a replacement
reaction to convert L-serine into L-tryptophan.
Length = 242
Score = 29.8 bits (68), Expect = 2.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 8 VANLKDEADIVVVGSCLVEFI 28
A + AD V+VGS LV+ I
Sbjct: 202 AAEVAKYADGVIVGSALVKII 222
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 30.0 bits (68), Expect = 2.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 235 VIITLGGSGVVYATRDN----PRLKTITVDHV 262
++LG SGVV + P+ IT H
Sbjct: 253 ASLSLGTSGVVAVVSEGPVPDPKGAVITFAHA 284
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 30.0 bits (68), Expect = 2.6
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 194 ILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV 244
ILADI A I K ED + + K LD+ ++ + G G
Sbjct: 405 ILADI------LAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGH 449
>gnl|CDD|182111 PRK09850, PRK09850, pseudouridine kinase; Provisional.
Length = 313
Score = 29.6 bits (66), Expect = 3.0
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD-----NPRLKT 256
N EAE ++ + ++ ED+A N +++++GG GV Y+ + +KT
Sbjct: 187 NRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKT 246
Query: 257 ITVDHVEYPIESEGVGDCFVGALA 280
++ G GD + LA
Sbjct: 247 NVIN-------VTGAGDAMMAGLA 263
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1)
component [Energy production and conversion].
Length = 887
Score = 29.6 bits (67), Expect = 3.2
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 305 KELQCLVARRVQLEGKNSSERK---------SNSAFVSWFKNNGNERGV---FGLAMKEV 352
E + L ARR L G + R S S F + K G E F + E+
Sbjct: 446 PEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNEL 505
Query: 353 YVPLPLHKLIVPISPDKCRYSTDSFGL 379
+ K IVPI PD+ R +FG+
Sbjct: 506 LKDKEIGKRIVPIIPDEAR----TFGM 528
>gnl|CDD|235592 PRK05756, PRK05756, pyridoxamine kinase; Validated.
Length = 286
Score = 29.1 bits (66), Expect = 3.5
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
+ ADII N E E ++ + ED L+ V++T + A
Sbjct: 135 ALPAADIITPNLFELEWLSGRPVETLEDAVAAARALIARGPKIVLVT----SLARAGYPA 190
Query: 252 PRLKTITVD-----HVEYPI-----ESEGVGDCFVG 277
R + + V H+ P+ + GVGD
Sbjct: 191 DRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSA 226
>gnl|CDD|233763 TIGR02175, PorC_KorC, 2-oxoacid:acceptor oxidoreductase, gamma
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins (H. pylori) used as the
acceptor. Several related four-subunit enzymes may exist
in the same species. This model describes the gamma
subunit. In Pyrococcus furious, enzymes active on
pyruvate and 2-ketoisovalerate share a common gamma
subunit.
Length = 177
Score = 28.5 bits (64), Expect = 4.3
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 46 FEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLE--------ELRKYNSINTKY 97
E RF G+G V A++L A A + K+ +++ E +R + I+ +
Sbjct: 2 IEIRFHGRGGQGAVTASQLLAEAAFLE----GKYAQAFPEFGAERRGAPVRAFLRISDRP 57
Query: 98 IWLLQDVTTGVCSKVISNKGTHQTNIIPG 126
I + + V+ N+ G
Sbjct: 58 IRVHSQIYEPDYVVVLDPTLLKTVNVTAG 86
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 28.0 bits (63), Expect = 8.7
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 196 ADIICINEQEAEIITDMKINNEEDLAD--CMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253
ADII I E+ A EE++ D + + VI+ G A P
Sbjct: 191 ADIIFIPEEPAA------DEWEEEMVDVIKKRRERGKRHGIVIVAEG------AIDFIP- 237
Query: 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGN 291
K IT + +E D L + Q+GG
Sbjct: 238 -KPITEKLLAKLVEERLGFDTRATVLGHV----QRGGT 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,072,739
Number of extensions: 1822364
Number of successful extensions: 1606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1557
Number of HSP's successfully gapped: 67
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)