RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8082
(379 letters)
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 260 bits (667), Expect = 5e-85
Identities = 106/281 (37%), Positives = 163/281 (58%), Gaps = 6/281 (2%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
A +VVVGSC+ + ++ LPK ET+ G+ F F GKGANQCV AA+L A +++ K+
Sbjct: 25 AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKV 84
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G D FG Y+E L++ + I+T++ + +D TG S +++N+G + I+ GAN L+
Sbjct: 85 GKDSFGNDYIENLKQND-ISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTE 143
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
D+ AA N++ +AKV++ Q E T+L L+ S K + NP+PA+ L+P
Sbjct: 144 DLRAAANVISRAKVMVCQLEITPATSLEALTMAR---RSGVKTLFNPAPAIADLDPQFYT 200
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
L+D+ C NE EAEI+T + + + D + LL C VIITLG G V ++ P
Sbjct: 201 LSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEP 260
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSC 295
K I + V+ +++ G GD FVGALA+Y A +L+
Sbjct: 261 KHIPTEKVK-AVDTTGAGDSFVGALAFYL-AYYPNLSLEDM 299
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 246 bits (630), Expect = 7e-80
Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 11/275 (4%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFS-GKGANQCVAAAKLRASVALISK 73
+V++GS V+ V+ +P ET+ ++ F GKGANQ +A A+++A I+K
Sbjct: 3 NKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITK 62
Query: 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSA 133
+G D LE+ + + I+T YI + TG ++ +G + + GAN ++
Sbjct: 63 IGTDGVADFILEDFKVAH-IDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTP 121
Query: 134 SDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVM 193
D+ AK+ ++ A ++ Q E P + ++NP+PA L ++
Sbjct: 122 EDVINAKDAIINADFVVAQLEVPIPAIISAFEIAK---AHGVTTVLNPAPAK-ALPNELL 177
Query: 194 ILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253
L DII NE EAE+++ +K+ NE+ + D L + TV+ITLG G +AT++ +
Sbjct: 178 SLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQ 237
Query: 254 L-KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ V+ I++ GD F+GA Q
Sbjct: 238 HIEAYKVN----AIDTTAAGDTFIGAFVSRLNKSQ 268
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 244 bits (625), Expect = 5e-79
Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 10/274 (3%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+VV+GS + I +Q+ P P ETV G H++ F GKGANQ VAA + A++A I+
Sbjct: 5 GSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACT 64
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G+D G+S ++L N I+ + +++ +TGV ++ +G + I GAN LS +
Sbjct: 65 GDDSIGESVRQQLATDN-IDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPA 123
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
++A + + A ++ Q E+P E+ + H +++ + +NP+PA L ++
Sbjct: 124 LVEAQRERIANASALLMQLESPLESVMAAAKIAH---QNKTIVALNPAPAR-ELPDELLA 179
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-R 253
L DII NE EAE +T +++ N+ED A + L + TV+ITLG GV + R
Sbjct: 180 LVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQR 239
Query: 254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ V +++ GD F GAL +
Sbjct: 240 VPGFRVQ----AVDTIAAGDTFNGALITALLEEK 269
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 237 bits (607), Expect = 4e-76
Identities = 57/281 (20%), Positives = 110/281 (39%), Gaps = 14/281 (4%)
Query: 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVA 69
+L+ E ++V G+ +V+ + + +P + G H + F G N A++ +
Sbjct: 2 SLRKEPYLLVFGASVVDVFGFSKASYRPYNSTPG-HVKISFGGVCRNIAENMARVGVNTN 60
Query: 70 LISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANT 129
+S LGND+ GKS +E +K + +++ +T ++ G + I +
Sbjct: 61 FMSILGNDEHGKSIVEHSKKIG-YHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSI 119
Query: 130 -YLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-P 187
++ ID+ + + A+ + + P + + + I++P A
Sbjct: 120 GAMNTDFIDSKREIFENAEYTVLDSDNPEIMEYLLKNF-----KDKTNFILDPVSAEKAS 174
Query: 188 LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247
++ I N EAEI+ I + +DL L + V I+L G+ Y
Sbjct: 175 WVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGIFYN 234
Query: 248 TRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ ++K VD G GD FV L Y +
Sbjct: 235 DGVSCGKIKATEVD----VKNVTGAGDSFVAGLGYGYMNKM 271
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 224 bits (572), Expect = 1e-70
Identities = 53/273 (19%), Positives = 103/273 (37%), Gaps = 14/273 (5%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
++ VG+ +++ + V +PK E V Y Q G ++ A ++ +L +G
Sbjct: 31 HVLCVGAAVLDTLFRVADMPKGEGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVG 90
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
+D+ G L +L + I+T + + + + + +I N+G + I+P + L
Sbjct: 91 DDETGTRILRDLSESG-IDTSGMTVAPGARSALSTIIIDNRG--ERLIVPFYDHRLHEKK 147
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
+ ++ P E L L+ I++ A +
Sbjct: 148 RACTPEDIALFDAVLVDVRWP-ELALDVLTVAR---ALGKPAILDGDVAPVETLEGLAPA 203
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK-CNTVIITLGGSGVVYATRDNPRL 254
A I +E A +T + E + D + L + +T G +G + D+P +
Sbjct: 204 ATHIVFSEPAATRLTGL-----ETVKDMLPVLHARYPQTFIAVTAGPAGCWWTEADDPTV 258
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
T VE +++ GD F G A G
Sbjct: 259 HFQTTMQVE-AVDTLAAGDIFHGTFALAMAEGM 290
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 221 bits (567), Expect = 3e-70
Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 19/274 (6%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRA-SVALISKL 74
I VVGS ++ + V KP ET K GKGANQ V AK+ ++ +
Sbjct: 16 VISVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCI 75
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
GND + +E K I + TG + G ++ I PGAN L
Sbjct: 76 GNDDYSDLLIENYEKLG-ITGYIR---VSLPTGRAFIEVDKTGQNRIIIFPGANAELKKE 131
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
ID L ++ +++ Q E P+ETTL C + + +I +P+PA +N +
Sbjct: 132 LIDWN--TLSESDILLLQNEIPFETTLECAKRFNG------IVIFDPAPAQ-GINEEIFQ 182
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
D + NE+E E ++ + EK L++ VI+ LG GV+ ++ +
Sbjct: 183 YLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKH 242
Query: 255 -KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
T V +++ GD F GA A G+
Sbjct: 243 FPTFKVK----AVDTTAAGDVFNGAFAVALSEGK 272
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 208 bits (533), Expect = 3e-65
Identities = 52/279 (18%), Positives = 92/279 (32%), Gaps = 23/279 (8%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
I+V+G ++ ++T P + G + + G G N ++L V +I+ G
Sbjct: 6 ILVLGGAHIDRRGMIETETAPGASNPG-SWMEEAGGGGFNAARNLSRLGFEVRIIAPRGG 64
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYL---SA 133
D G+ E R+ + D T + ++ G + L
Sbjct: 65 DVTGEVVAEAARQAG-VEDTPF-TFLDRRTPSYTAILERDGNLVIALADMDLYKLFTPRR 122
Query: 134 SDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVM 193
+ A + ++ + ++ P +T + A I ++P+ AV L +
Sbjct: 123 LKVRAVREAIIASDFLLCDANLPEDTLTALGLIARACEKPLAAIAISPAKAV-KLKAALG 181
Query: 194 ILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN-- 251
DI+ +NE EA +T N D L + ++T G S VV
Sbjct: 182 -DIDILFMNEAEARALTGETAENVRDWP---NILRKAGLSGGVVTRGASEVVAFNGTEKA 237
Query: 252 ---PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
P L D G GD G+
Sbjct: 238 ILHPPLIREVKDVT-------GAGDAMASGYLAAIAEGK 269
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 205 bits (524), Expect = 5e-64
Identities = 49/265 (18%), Positives = 90/265 (33%), Gaps = 29/265 (10%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+ V G+ V+ + +PK ++ G Q GKGANQ + ++ LI+ GN
Sbjct: 5 VYVTGNITVDETWSIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGN 64
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D G ++++ + + + + S G + A S ++
Sbjct: 65 DSNGAWIRQQIKNEP-LMLLPD-GHFNQHSDTSIILNSADGDNAIITTTAAADTFSLDEM 122
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA 196
+ +++ QG + T + NPSP P + L
Sbjct: 123 IPHMADAVAGDILLQQGNFSLDKTRALFQYAR---SRGMTTVFNPSPVN-PDFCHLWPLI 178
Query: 197 DIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-RLK 255
DI +NE EAE+ L T++IT G +G
Sbjct: 179 DIAVVNESEAEL------------------LQPYGVKTLVITQGAAGAWLVQEGQRQFCP 220
Query: 256 TITVDHVEYPIESEGVGDCFVGALA 280
+ + +++ G GD F+ +
Sbjct: 221 AVPAE----ALDTTGAGDTFLAVML 241
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 193 bits (492), Expect = 2e-59
Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 33/280 (11%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
I VG +++I V+ P+P +++ + + G AN V KL + L+S +
Sbjct: 6 EKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCV 65
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G D Y L+ + IN ++ ++ T T + GA +
Sbjct: 66 GYDFKNSGYERYLKNLD-INISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKEL 124
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------VYPL 188
+ +++ P E L + ++ +V+ P +
Sbjct: 125 NPPNF-----NTEIVHIATGDP-EFN------LKCAKKAYGNNLVSFDPGQDLPQYSKEM 172
Query: 189 NPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248
++ + + +N+ E E +++ +D + + + +I+T G G V T
Sbjct: 173 LLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLE--------RVDALIVTKGSKGSVIYT 224
Query: 249 RDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYFKAG 286
+D K I + I+ G GD + + G
Sbjct: 225 KD----KKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKG 260
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 191 bits (488), Expect = 1e-58
Identities = 68/276 (24%), Positives = 100/276 (36%), Gaps = 36/276 (13%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+ VVGS ++ V LP+P ETV + GKGANQ VAAA+ A V
Sbjct: 20 PRVCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAF 79
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G+D LR + + +G V+ + + PGAN +
Sbjct: 80 GDDPAAAQLRAHLRANA-VGLDRT-VTVPGPSGTAIIVVDASAENTVLVAPGAN-----A 132
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY--PLNPIV 192
+ + + V++ Q E P T L + A ++VN SPA +
Sbjct: 133 HLTPVPSAVANCDVLLTQLEIPVATALAAARAAQ---SADAVVMVNASPAGQDRSSLQDL 189
Query: 193 MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252
+AD++ NE EA +ITLG G Y D
Sbjct: 190 AAIADVVIANEHEANDWPSP-------------------PTHFVITLGVRGARYVGADGV 230
Query: 253 -RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ TV P+++ G GD F G LA +
Sbjct: 231 FEVPAPTVT----PVDTAGAGDVFAGVLAANWPRNP 262
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 191 bits (486), Expect = 5e-58
Identities = 47/285 (16%), Positives = 87/285 (30%), Gaps = 30/285 (10%)
Query: 16 DIVVVGSCLVEFITYVQT----------LPKPEETVKGYHFEQRFSGKGANQCVAAAKLR 65
I V GS + + L K + G N A L
Sbjct: 12 TIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVLG 71
Query: 66 ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP 125
VAL+ G D Y + L+ +N ++ + + T + + P
Sbjct: 72 GEVALVGAAGADFAD--YRDWLKARG-VNCDHVLISETAHTARFTCTTDVDMAQIASFYP 128
Query: 126 GANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAV 185
GA + + + + K ++++ P E + + +PS +
Sbjct: 129 GAMSEARNIKLADVVSAIGKPELVIIGANDP-EAMFLHTEECR---KLGLAFAADPSQQL 184
Query: 186 YPLNP----IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
L+ ++ A + N+ E +++ +E D+ + + + TLG
Sbjct: 185 ARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEADVMA--------QIDLRVTTLGP 236
Query: 242 SGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
GV D + V + GVGD F AG
Sbjct: 237 KGVDLVEPDGTTIHVGVVPETS-QTDPTGVGDAFRAGFLTGRSAG 280
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 185 bits (473), Expect = 3e-56
Identities = 55/286 (19%), Positives = 105/286 (36%), Gaps = 30/286 (10%)
Query: 16 DIVVVGSCLVEFI-TYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
D++ +G+ +V+ V ++ G N+ ++L AL+S++
Sbjct: 7 DVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRI 66
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII-PGANTYLSA 133
G D G+ L+ RK N I+ + + + T + +++ G G+ L+
Sbjct: 67 GKDAAGQFILDHCRKEN-IDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNI 125
Query: 134 SDIDAAKNLLLKAKVIMFQG--ETP---WETTLYCLSKLHVSLESRAKI---IVNPSPAV 185
D+D A +AK++ +P + ++ + I ++ P
Sbjct: 126 DDVDFA--RFSQAKLLSLASIFNSPLLDGKALTEIFTQAK---ARQMIICADMIKPRLNE 180
Query: 186 YPLNPIVMIL--ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243
L+ I L D + N EA+++T +E L + + L TV+I G G
Sbjct: 181 -TLDDICEALSYVDYLFPNFAEAKLLT-----GKETLDEIADCFLACGVKTVVIKTGKDG 234
Query: 244 VVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYFKAGQ 287
D T+ V I++ G GD F G+
Sbjct: 235 CFIKRGD----MTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGK 276
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 181 bits (461), Expect = 2e-54
Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 38/286 (13%)
Query: 17 IVVVGSCLVEFITYVQT----------LPKPEETVKGYHFEQRFSGKGANQCVAAAKLRA 66
++ GS + I + + + + F G N A L
Sbjct: 3 TLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGG 62
Query: 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG 126
++ LG + YL+ + ++ +Y+ +L D + T PG
Sbjct: 63 DARMMGTLGAV-DAQPYLDRMDALG-LSREYVRVLPDTYSAQAMITTDLDNNQITAFHPG 120
Query: 127 ANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY 186
A + AK++ L G ++ + +L ++ I +P +
Sbjct: 121 AMMQSHVNHAGEAKDIKL-----AIVGPDGFQGMVQHTEELA---QAGVPFIFDPGQGLP 172
Query: 187 PLNPIVMI----LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS 242
+ + LA I +N+ EA+++ D +E+++A + +IIT G
Sbjct: 173 LFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIAS--------RVQALIITRGEH 224
Query: 243 GVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYFKAG 286
G RD T + E I+ G GD F G L Y + G
Sbjct: 225 GATIRHRD----GTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHG 266
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 177 bits (452), Expect = 3e-53
Identities = 46/283 (16%), Positives = 103/283 (36%), Gaps = 18/283 (6%)
Query: 6 HCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLR 65
H + + I+ VG +++ I+ V PK + ++ + G +N C + L
Sbjct: 9 HSSGLVPRGSQILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLG 68
Query: 66 ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII- 124
A A + + L++LR+Y+ ++ +Y + + + VI N+ + I+
Sbjct: 69 APCAFMGSMAPGHVADFVLDDLRRYS-VDLRYTVFQTTGSVPIAT-VIINEASGSRTILY 126
Query: 125 -PGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETT--LYCLSKLHVSLESRAKIIVNP 181
+ +SA+D + L + K I +G E L + + KI V+
Sbjct: 127 YDRSLPDVSATDFEKV--DLTQFKWIHIEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSV 184
Query: 182 SPAVYPLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDM--KCNTVIIT 238
+ D++ +++ A+ + + + + L K ++
Sbjct: 185 EVEKPREELFQLFGYGDVVFVSKDVAKHLG------FQSAEEALRGLYGRVRKGAVLVCA 238
Query: 239 LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAY 281
G D L + +++ G GD F ++ +
Sbjct: 239 WAEEGADALGPDGKLLHSDAF-PPPRVVDTLGAGDTFNASVIF 280
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 171 bits (435), Expect = 8e-51
Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 43/278 (15%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+ G ++ + V ++P+ RF G N + A K R L S +
Sbjct: 21 RFLAYFGHLNIDVLISVDSIPREGSVNVK-DLRPRFGGTAGNFAIVAQKFRIPFDLYSAV 79
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII-PGANTYLSA 133
G + YL + INT ++ +D + +C I+ G Q + + GA +
Sbjct: 80 GMKTHRE-YLAMIESMG-INTGHVEKFEDESGPIC--YIATDGKKQVSFMHQGAMAAWAP 135
Query: 134 SDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVM 193
D + + T L R+KII +PS ++ + +
Sbjct: 136 QLADEYEYVHF-------------STGPNYLDMAK---SIRSKIIFDPSQEIHKYSKDEL 179
Query: 194 I----LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249
++ + N+ E + +M + + I+T G G
Sbjct: 180 KKFHEISYMSIFNDHEYRVFREMTGLSSPKVT-------------TIVTNGERGSSLFMD 226
Query: 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
K + ++ G GD F L +
Sbjct: 227 G----KKYDFPAIPSSGDTVGAGDSFRAGLYLALYNRR 260
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II,
NYSGXRC, struc genomics, protein structure initiative;
HET: AMP; 1.88A {Chlorobaculum tepidum}
Length = 313
Score = 136 bits (343), Expect = 2e-37
Identities = 46/283 (16%), Positives = 93/283 (32%), Gaps = 26/283 (9%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL-RASVALISKL 74
++V+GS + I ET G + G ++A+ + ++ +
Sbjct: 4 SLLVIGSLAFDDI----------ETPFG-RSDNTLGGSSTYIALSASYFTDEPIRMVGVV 52
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G+D FGK + + L N I+T+ I +++D T + + + N +
Sbjct: 53 GSD-FGKEHFDLLHAKN-IDTRGIQVIEDGKTFRWAGRYHYDMNTRDTLDTQLNVFAEF- 109
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
+K + P E L L ++ + V+
Sbjct: 110 -DPHVPQYYRDSKFVCLGNIDP-ELQLKVLDQIDDPKLVVCDTMNFWIEGKPEELKKVLA 167
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
D+ +N+ EA +++ + +L + +M T+II G G + T +
Sbjct: 168 RVDVFIVNDSEARLLS-----GDPNLVKTARIIREMGPKTLIIKKGEHGALLFTDNGIFA 222
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQK--GGNLDSC 295
+E + G GD F G + +
Sbjct: 223 --APAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKA 263
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 133 bits (337), Expect = 4e-36
Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 48/307 (15%)
Query: 9 ANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASV 68
+++K + V+G V+ + PE+ + + G AN V A+L
Sbjct: 19 SHMKAMNKVWVIGDASVDLV--------PEKQN---SYLKCPGGASANVGVCVARLGGEC 67
Query: 69 ALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII---- 124
I LG+D G+ + + ++ ++ L D+T+ V ++ G + +
Sbjct: 68 GFIGCLGDDDAGRFLRQVFQDNG-VDVTFLRLDADLTSAVLIVNLTADG--ERSFTYLVH 124
Query: 125 PGANTYLSASDIDAAKNLLLKAKV-----IMFQGETPWETTLYCLSKLH-----VSLES- 173
PGA+TY+S D+ + + I E L ++ V +
Sbjct: 125 PGADTYVSPQDLPPFRQ----YEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVN 180
Query: 174 -RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKC 232
R+K+ N + LA I ++ E ++ D L D+ C
Sbjct: 181 LRSKMWGNTDEIPELIARSAA-LASICKVSADELCQLSG-----ASHWQDARYYLRDLGC 234
Query: 233 NTVIITLGGSGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGN 291
+T II+LG G + T + VD +++ G GD FVG L + +
Sbjct: 235 DTTIISLGADGALLITAEGEFHFPAPRVD----VVDTTGAGDAFVGGLLFTLS---RANC 287
Query: 292 LDSCRLR 298
D L
Sbjct: 288 WDHALLA 294
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 124 bits (314), Expect = 7e-33
Identities = 57/289 (19%), Positives = 98/289 (33%), Gaps = 36/289 (12%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
+ + +G LVE + P + G SG A +L +IS +
Sbjct: 4 SKVFTIGEILVEIMASKIGQPFDQP---GIWNGPYPSGAPAIFIDQVTRLGVPCGIISCV 60
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQT--NIIPGANTYLS 132
GND FG + L ++ + I +L TG N G NI A LS
Sbjct: 61 GNDGFGDINIHRLAADG-VDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLS 119
Query: 133 ASDIDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSKLHVSLESRAKIIVNP------ 181
A +D +L G + ++ + + I +P
Sbjct: 120 AQHVDEN--ILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVK---ANGGVISFDPNIRKEM 174
Query: 182 --SPAVYP-LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
P + L+ ++ L DI +E E +++ + L+ VI+
Sbjct: 175 LDIPEMRDALHFVLE-LTDIYMPSEGEVLLLSP-----HSTPERAIAGFLEEGVKEVIVK 228
Query: 239 LGGSGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
G G Y + + +++ V+ ++ G GDCF GA + G
Sbjct: 229 RGNQGASYYSANEQFHVESYPVE----EVDPTGAGDCFGGAWIACRQLG 273
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 122 bits (307), Expect = 3e-32
Identities = 36/296 (12%), Positives = 78/296 (26%), Gaps = 58/296 (19%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
I +G + E G G + ++ L +I+K
Sbjct: 13 MITFIGHVSKDVNVV----DGKREIAYG--------GGVVMGAITSSLLGVKTKVITKCT 60
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
+ K LR + ++ + T + + + + A + SD
Sbjct: 61 REDVSK--FSFLRDNG-VEVVFL---KSPRTTSIENRYGSDPDTRESFLISAADPFTESD 114
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
+ ++ + + E + L + + V ++
Sbjct: 115 LAF-----IEGEAVHINPLWYGEFPEDLIPVLR---RKVMFLSADAQGFVRVPENEKLVY 166
Query: 196 ------------ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243
D+ ++ +EAE +T DL + + ++ T SG
Sbjct: 167 RDWEMKEKYLKYLDLFKVDSREAETLT-----GTNDLRESCRIIRSFGAKIILAT-HASG 220
Query: 244 VVYATRDNPRLKTITVDHVEYPIESE----GVGDCFVGALAYYFKAGQKGGNLDSC 295
V+ + + S G GD A F K +++
Sbjct: 221 VIVFDGN--------FYEASFRSWSLEGRTGRGDTCTAAFLVGFVF--KKMSIEKA 266
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 119 bits (301), Expect = 3e-31
Identities = 50/290 (17%), Positives = 92/290 (31%), Gaps = 54/290 (18%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
A ++ +G L+EF P +FE+ +G AN CVA K +I+K+
Sbjct: 2 AKLITLGEILIEFNA-----LSPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKV 56
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII----PGANTY 130
G+D+FG + +E LR ++ ++ + TG+ ++ I A +
Sbjct: 57 GDDEFGYNAIEWLRGQG-VDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSK 115
Query: 131 LSASDIDAAKNLLLKAKVIMFQG------ETPWETTLYCLSKLHVSLESRAKII---VN- 180
LS D+D + A ++ G T E A N
Sbjct: 116 LSPEDVDEE--YVKSADLVHSSGITLAISSTAKEAVYKAF--------EIASNRSFDTNI 165
Query: 181 -----PSPAVYP--LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCN 233
+ L + + + +++II ++ + A
Sbjct: 166 RLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILG--ESDPDKAAK----AFSDYAE 219
Query: 234 TVIITLGGSGVVYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGAL 279
+++ LG G + + D G GD G
Sbjct: 220 IIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVT-------GAGDALGGTF 262
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 115 bits (291), Expect = 1e-29
Identities = 60/279 (21%), Positives = 109/279 (39%), Gaps = 35/279 (12%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D+V +G LV+ I+ + + + F G AN V ++L VALIS+LG
Sbjct: 23 DVVSLGEILVDMIS--TEEVNSLSQSR--EYTRHFGGSPANIAVNLSRLGKKVALISRLG 78
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII--PGANTYLSA 133
D FG L+ L+ I T I ++ T + V +K T + + A+ YL
Sbjct: 79 ADAFGNYLLDVLKGEQ-IITDGIQQDKERRTTI---VYVSKSTRTPDWLPYREADMYLQE 134
Query: 134 SDIDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSK-----LHVSLES--RAKIIVNP 181
DI L+ ++KV + +T + + V + R +
Sbjct: 135 DDIIFE--LIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEG 192
Query: 182 SPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
+ I+ AD + + +A + + + +++ L++ VI+TLG
Sbjct: 193 DDGAGVVEEIIS-RADFVKPSLDDARHLFG-----PDSPENYVKRYLELGVKAVILTLGE 246
Query: 242 SGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGAL 279
GV+ + + R+ + D ++ G GD F
Sbjct: 247 EGVIASDGEEIIRIPAFSED----AVDVTGAGDAFWSGF 281
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 115 bits (289), Expect = 2e-29
Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 38/283 (13%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D++ G ++ V P P E + F +R +G N + A+L V S+LG
Sbjct: 28 DVITFGEAMMLL---VADRPGPLEHAE--AFHKRTAGAETNVAIGLARLGLKVGWASRLG 82
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII----PGANTYL 131
D G+ L + I+ ++ TG K G + A +++
Sbjct: 83 TDSMGRYLLAAMAAEG-IDCSHVVCDATQKTGFQFKGKVTDG-SDPPVEYHRKGSAASHM 140
Query: 132 SASDIDAAKNLLLKAKVIMFQG------ETPWETTLYCLSK-----LHVSLES--RAKII 178
+DID A LL A+ + G T + VS + R +
Sbjct: 141 GVADIDEA--WLLSARHLHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPTLW 198
Query: 179 VNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
P +N + AD + +E +T E + V++
Sbjct: 199 ATPELMRDAINDLAT-RADWVLPGMEEGRFLTG-----ETTPEGVARFYRQLGAKLVVVK 252
Query: 239 LGGSGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGAL 279
LG G + + V V +++ G GD F +
Sbjct: 253 LGAEGAYFDGEA----GSGRVAGFPVAEVVDTVGAGDGFAVGV 291
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 112 bits (283), Expect = 1e-28
Identities = 57/288 (19%), Positives = 110/288 (38%), Gaps = 34/288 (11%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
D++ +G L++F P P V +FE+ +G N C+A + S +LI+++
Sbjct: 2 VDVIALGEPLIQFN---SFNPGPLRFVN--YFEKHVAGSELNFCIAVVRNHLSCSLIARV 56
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGV--CSKVISNKGTHQT--NIIPGANTY 130
GND+FGK+ +E R I+T +I + + TG+ + + A +
Sbjct: 57 GNDEFGKNIIEYSRAQG-IDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSR 115
Query: 131 LSASDIDAAKNLLLKAKVIMFQG------ETPWETTLYCLSKLH-VSLES--RAKIIVNP 181
LS DI+ + ++++ G + E + SL++ R K+ +
Sbjct: 116 LSPEDINEN--YVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSRSLDTNIRPKLWSSL 173
Query: 182 SPAVYPLNPIVMILADIICI--NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITL 239
A + I+ DI + + + +I+ D D + K ++ ++ L
Sbjct: 174 EKAKETILSILK-KYDIEVLITDPDDTKILLD-----VTDPDEAYRKYKELGVKVLLYKL 227
Query: 240 GGSGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
G G + + V + G GD G + G
Sbjct: 228 GSKGAIAYKDNVKAFKDAYKVP----VEDPTGAGDAMAGTFVSLYLQG 271
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 109 bits (274), Expect = 2e-27
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 49/284 (17%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
IV +G L + + PE ++ G AN ++ ++S +G
Sbjct: 5 IIVGMGEALWDVL--------PEG--------KKIGGAPANFAYHVSQFGFDSRVVSAVG 48
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII--PGANTYLSA 133
ND+ G +E ++ + + D TG + ++G I +
Sbjct: 49 NDELGDEIMEVFKEKQ-LKNQIE--RVDYPTGTVQVTLDDEGVPCYEIKEGVAWDNIPFT 105
Query: 134 SDIDAAKNLLLKAKVIMF-----QGETPWETTLYCLSKLHVSLESRAKII---VNPSPAV 185
++ L L + + F + E T L + + ++ +N
Sbjct: 106 DELKR---LALNTRAVCFGSLAQRNEVSRATINRFLDTMP---DIDGQLKIFDINLRQDF 159
Query: 186 YPLNPI--VMILADIICINEQEAEIITDMKINNEEDLAD-CMEKLLDMKCNTVIITLGGS 242
Y + +I+ IN++E I+ M DL D C L +I+T G +
Sbjct: 160 YTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGIN 219
Query: 243 GVVYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGALAYY 282
G T K D V G GD F A
Sbjct: 220 GSYVFTPGVVSFQETPKVPVADTV-------GAGDSFTAAFCAS 256
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 108 bits (272), Expect = 4e-27
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 34/282 (12%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
+++ +G V+ Y V+ F + G AN VAAA+ + AL+S++G
Sbjct: 10 EVLAIGRLGVDI--YPLQSGVGLADVQ--SFGKYLGGSAANVSVAAARHGHNSALLSRVG 65
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII--PGAN-TYLS 132
ND FG+ L EL + ++ +Y+ Q T V I P A +
Sbjct: 66 NDPFGEYLLAELERLG-VDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIE 124
Query: 133 ASDIDAAKNLLLKAKVIMFQG----ETPWETTLYCLSK-----LHVSLES--RAKIIVNP 181
++D+ + +A ++ F E P T + H + R +P
Sbjct: 125 SADVSLD--DVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTIFDLDYRPMFWESP 182
Query: 182 SPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
A + + + N++E EI E + LL+ I+ G
Sbjct: 183 EEATKQAEWALQ-HSTVAVGNKEECEIAV-----GETEPERAGRALLERGVELAIVKQGP 236
Query: 242 SGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAY 281
GV+ T+D +T+ V V+ I G GD F GAL +
Sbjct: 237 KGVMAMTKD----ETVEVPPFFVD-VINGLGAGDAFGGALCH 273
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 106 bits (268), Expect = 2e-26
Identities = 42/284 (14%), Positives = 90/284 (31%), Gaps = 43/284 (15%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL--RASVALISK 73
I+ +G C+ E P + + F+G N A+L + ++ S
Sbjct: 25 HILSIGECMAELA--------PADL--PGTYRLGFAGDTFNTAWYLARLRPESRISYFSA 74
Query: 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQT----NIIPGANT 129
+G+D + + I+ + ++ T G+ + G A
Sbjct: 75 IGDDALSQQMRAAMSAAG-IDGGGLRVIPGRTVGLYLITLEQ-GERSFAYWRG--QSAAR 130
Query: 130 YLSASDIDAAKNLLLKAKVIMFQGETPW-------ETTLYCLSKLH-----VSLES--RA 175
L+ D DA + +A V+ F G T T L L++ ++ + R
Sbjct: 131 ELAG-DADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRP 189
Query: 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTV 235
++ + ++DI + ++ + ++ +V
Sbjct: 190 RLWAGTGEMTETIMQGAA-VSDIALPSFEDEAAWFG-----DAGPDATADRYARAGVRSV 243
Query: 236 IITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGAL 279
++ G V + + V V +++ GD F L
Sbjct: 244 VVKNGPHAVHFLQDGRRG--RVPVPPVAQVVDTTAAGDSFNAGL 285
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 106 bits (267), Expect = 3e-26
Identities = 48/283 (16%), Positives = 104/283 (36%), Gaps = 31/283 (10%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
D++ +G ++ +P E F + G AN + ++KL I K+
Sbjct: 13 DLIAIGRACIDL--NAVEYNRPMEETM--TFSKYVGGSPANIVIGSSKLGLKAGFIGKIA 68
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDV-TTGVCSKVISNKGTHQTNII----PGANTY 130
+D+ G+ +R ++T + + Q+ TG+ I + +I+ A+ Y
Sbjct: 69 DDQHGRFIESYMRGVG-VDTSNLVVDQEGHKTGLAFTEIKSPEE--CSILMYRQDVADLY 125
Query: 131 LSASDIDAAKNLLLKAKVIMFQGETP-----WETTLYCLSK-----LHVSLES--RAKII 178
LS +++ A + ++K+++ G E L + + V E R
Sbjct: 126 LSPEEVNEA--YIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSW 183
Query: 179 VNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238
P + + +DI+ +E +++ + + D + + L ++I
Sbjct: 184 ETPEETAVYYSLVAE-QSDIVIGTREEFDVLEN--RTEKGDNDETIRYLFKHSPELIVIK 240
Query: 239 LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAY 281
G G T+ + +++ G GD + A Y
Sbjct: 241 HGVEGSFAYTKAG-EAYRGYAYKTK-VLKTFGAGDSYASAFLY 281
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 104 bits (262), Expect = 1e-25
Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 47/289 (16%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRA----SVALI 71
I V+G C++E + ++ F G N V A+ +V +
Sbjct: 6 KIAVIGECMIELS--------EKGA----DVKRGFGGDTLNTSVYIARQVDPAALTVHYV 53
Query: 72 SKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQT----NIIPGA 127
+ LG D F + L+ N ++T +++ G+ + G N A
Sbjct: 54 TALGTDSFSQQMLDAWHGEN-VDTSLTQRMENRLPGLYYIETDSTGERTFYYWRN--EAA 110
Query: 128 NTYLSASDIDAAKNLLLK-AKVIMFQGETP-------WETTLYCLSKLH-----VSLES- 173
+ AS+ AA L + G + E L L + V ++
Sbjct: 111 AKFWLASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNN 170
Query: 174 -RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKC 232
R ++ + ++ DI + + + + ++ + D + + +
Sbjct: 171 YRPRLWASKEETQQVYQQMLE-CTDIAFLTLDDEDALWG-----QQPVEDVIARTHNAGV 224
Query: 233 NTVIITLGGSGVVYATRDNPRLK--TITVDHVEYPIESEGVGDCFVGAL 279
V++ G + + + + + + I++ GD F
Sbjct: 225 KEVVVKRGADSCLVSIAGEALVDVPAVKLPKEK-VIDTTAAGDSFSAGY 272
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 102 bits (256), Expect = 1e-24
Identities = 52/297 (17%), Positives = 95/297 (31%), Gaps = 53/297 (17%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKG---YHFEQRFSGKGANQCVAAAKLRASVALIS 72
I+ G L++ + + VK F Q G AN VA A+L +V +
Sbjct: 6 TILCFGEALIDML--------AQPLVKKGMPRAFLQCAGGAPANVAVAVARLGGAVQFVG 57
Query: 73 KLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII----PGAN 128
LG+D FG + + + T I T + + G + + P A+
Sbjct: 58 MLGSDMFGDFLFDSFAEAG-VVTDGIVRTSTAKTALAFVALDAHG--ERSFSFYRPPAAD 114
Query: 129 TYLSASDIDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSKLHVSLESRAKII--VN- 180
A A + E T + + + A + +N
Sbjct: 115 LLFRVEHFQDA--SFSDALIFHACSNSMTDADIAEVTFEGMRRAQ---AAGAIVSFDLNF 169
Query: 181 -----PSPAVYP--LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCN 233
P+ L + LAD++ ++ +E + + + + + +L +
Sbjct: 170 RPMLWPNGENPASRLWKGLS-LADVVKLSSEELDYLANTLAADANAVIQ---QLWQGRAQ 225
Query: 234 TVIITLGGSGVVYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+++T V + TR P + D GD FVG + Y F
Sbjct: 226 LLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSN-------AAGDAFVGGMLYTFAQQ 275
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 98.4 bits (246), Expect = 2e-23
Identities = 52/292 (17%), Positives = 89/292 (30%), Gaps = 63/292 (21%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
++V G LV V P + E G N VA A+L V + ++
Sbjct: 2 LEVVTAGEPLVAL---VPQEPGHLRGKR--LLEVYVGGAEVNVAVALARLGVKVGFVGRV 56
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQT--NIIPGANTYLS 132
G D+ G E LR ++ + TG+ + G + A + L+
Sbjct: 57 GEDELGAMVEERLRAEG-VDLTHFRRAPGF-TGLYLREYLPLGQGRVFYYRKGSAGSALA 114
Query: 133 ASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSK-----LHVSL---------- 171
D L + + G TP +L+ + + + VSL
Sbjct: 115 PGAFDPD--YLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWS 172
Query: 172 ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK 231
A+ + + D++ ++E+EAE++ + E L +
Sbjct: 173 PEEARGFLER----------ALPGVDLLFLSEEEAELLFG-----RVE-----EALRALS 212
Query: 232 CNTVIITLGGSGVVYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGAL 279
V++ G G VD V G GD F
Sbjct: 213 APEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPV-------GAGDAFAAGY 257
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 92.2 bits (230), Expect = 3e-21
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 47/281 (16%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
I +G L++ I + V+ FE+ G AN V ++L +LISK+G
Sbjct: 3 LIASIGELLIDLI---SVEEGDLKDVR--LFEKHPGGAPANVAVGVSRLGVKSSLISKVG 57
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
ND FG+ +EEL K N ++T+ I + TG+ + A ++ +D
Sbjct: 58 NDPFGEYLIEELSKEN-VDTRGIVKDEKKHTGIVFVQLKGASPSFLLYDDVAYFNMTLND 116
Query: 136 IDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSKLHVSLESRAKIIV---NPSPAVYP 187
I+ ++ +AK++ F ET + + K+ + +I N ++
Sbjct: 117 INWD--IVEEAKIVNFGSVILARNPSRETVMKVIKKIK-----GSSLIAFDVNLRLDLWR 169
Query: 188 LNPIVMI--------LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITL 239
MI LADI+ +E+E + + + + ITL
Sbjct: 170 GQEEEMIKVLEESIKLADIVKASEEEVLYLEN-------------QGVEVKGSMLTAITL 216
Query: 240 GGSGVVYATRDNP-RLKTITVDHVEYPIESEGVGDCFVGAL 279
G G + + + V+ P+++ G GD F+ AL
Sbjct: 217 GPKGCRLIKNETVVDVPSYNVN----PLDTTGAGDAFMAAL 253
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 82.4 bits (204), Expect = 1e-17
Identities = 64/323 (19%), Positives = 103/323 (31%), Gaps = 71/323 (21%)
Query: 5 SHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL 64
S + + +V G ++ P + + F+ + G AN A++
Sbjct: 3 SDKIHHHHHHMKVVTFGEIMLRLSP-----PDHKRIFQTDSFDVTYGGAEANVAAFLAQM 57
Query: 65 RASVALISKLGNDKFGKSYLEELRKYNSINTKYIW---------LLQDVTTGVCSKVISN 115
++KL N+ G + LRK+ + T YI L+ + SKV+ +
Sbjct: 58 GLDAYFVTKLPNNPLGDAAAGHLRKFG-VKTDYIARGGNRIGIYFLEIGASQRPSKVVYD 116
Query: 116 -KGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSKLH 168
+ A + D D K +L A+ F G TP L +
Sbjct: 117 RAHS--------AISEAKREDFDWEK-ILDGARWFHFSGITPPLGKELPLILEDALKVAN 167
Query: 169 VSLESRAKII--VN------PSPAVYPLNPIVMILADIICINEQEAEIITDMK------- 213
E + +N + M D++ NE++ E + +
Sbjct: 168 ---EKGVTVSCDLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLK 224
Query: 214 --INNEEDLADCMEKLLD-MKCNTVIITLGGS--------GVVYATRDN----PRLKTIT 258
N E A E++ TV ITL S V+ R +
Sbjct: 225 TGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNRYEIHI 284
Query: 259 VDHVEYPIESEGVGDCFVGALAY 281
VD V G GD F GAL Y
Sbjct: 285 VDRV-------GAGDSFAGALIY 300
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 82.0 bits (203), Expect = 1e-17
Identities = 44/300 (14%), Positives = 88/300 (29%), Gaps = 49/300 (16%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
I G ++ F P+ + F G G N A + ALI+KL
Sbjct: 4 KIAAFGEVMLRFTP-----PEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLP 58
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNII---PGANTYLS 132
++ G++ LRK I+ +++ D +++ Q A
Sbjct: 59 ANRLGEAGKAALRKLG-ISDQWVGEKGDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISE 117
Query: 133 ASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSKLH-----VSLES--RAKIIV 179
A D D L + ++ G + + L K H V + R +
Sbjct: 118 AKDYDFEA-FLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNT 176
Query: 180 NPSPAVYP--LNPIVMILADIICINEQEAEIITDMK----INNEEDLADCMEKLLD-MKC 232
S I + DI+ + ++ + + E + +++ +
Sbjct: 177 ANSALFMRQQYERI-LPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNL 235
Query: 233 NTVIITLGGSGV-------VYATRDN----PRLKTITVDHVEYPIESEGVGDCFVGALAY 281
T T++ + + +D + G GD + + Y
Sbjct: 236 EWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRI-------GAGDAYAAGILY 288
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 79.3 bits (196), Expect = 1e-16
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 33/251 (13%)
Query: 52 GKGANQCVAA---AKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGV 108
G N A + + +G D++ + E +N +Y TG
Sbjct: 81 GSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNG-VNVQYQ-RSATSPTGT 138
Query: 109 CSKVISNKG-THQTNIIPGANTYLSASDI--DAAKNLLLKAKVIMFQG---ETPWETTLY 162
C+ +++ + N+ A + + D + L A+ G +E+ L
Sbjct: 139 CAVLVTGTQRSLCANL--AAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALS 196
Query: 163 CLSKLHVSLESRAKIIVNPSPAVY-------PLNPIVMILADIICINEQEAEIITDMKIN 215
+ + ++N S A + L + D++ NE EA +
Sbjct: 197 VAKEAA---ATGRMFMMNLS-APFVPQFYKNNLE-EIFPYVDVLFGNETEAIALAKEFNY 251
Query: 216 NEEDLADCMEKLLDM------KCNTVIITLGGSGVVYATRDNPRLKTITVD--HVEYPIE 267
EDL + +++ + + VIIT G V+ ++ V E ++
Sbjct: 252 GTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVD 311
Query: 268 SEGVGDCFVGA 278
+ G GD FVG
Sbjct: 312 TNGAGDAFVGG 322
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Length = 347
Score = 78.1 bits (193), Expect = 3e-16
Identities = 50/264 (18%), Positives = 91/264 (34%), Gaps = 39/264 (14%)
Query: 55 ANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVIS 114
Q + A V + + +D++GK E I +G C+ I+
Sbjct: 73 VAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEG-IVMAVE-HTTKAGSGACAVCIT 130
Query: 115 NKG-THQTNIIPGANTYLSASDIDAAKNLLL--KAKVIMFQG---ETPWETTLYCLSKLH 168
K T ++ GA +LS+ + + + ++++ F G L K
Sbjct: 131 GKERTLVADL--GAANHLSSEHMRSPAVVRAMDESRIFYFSGFTLTVDVNHVLQACRKAR 188
Query: 169 VSLESRAKIIVNPSPAVYPLNPIV----------MILADIICINEQEAEIITDMKINNEE 218
E ++N S A + I+ + DII N EA+ +M + +
Sbjct: 189 ---EVDGLFMINLS-APF----IMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTD 240
Query: 219 DLADCMEKLLDM------KCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVG 272
+ + + + K V+ T V AT+D + + I+ G G
Sbjct: 241 CVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAG 300
Query: 273 DCFVGALAYYFKAG-QKGGNLDSC 295
D F+G F + G +L C
Sbjct: 301 DAFMGG----FLSAYAVGKDLRRC 320
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 77.8 bits (192), Expect = 4e-16
Identities = 54/265 (20%), Positives = 91/265 (34%), Gaps = 30/265 (11%)
Query: 52 GKGANQCVAA----AKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTG 107
G N A + + +G DKFG+ + + + ++ Y + TG
Sbjct: 64 GSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAH-VDAHYY-EQNEQPTG 121
Query: 108 VCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLL--KAKVIMFQG---ETPWETTLY 162
C+ I+ + AN Y +D KN +L KA+V G E+ L
Sbjct: 122 TCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLK 181
Query: 163 CLSKLHVSLESRAKIIVNPS----PAVYPLNPIVMI-LADIICINEQEAEIITDMKINNE 217
E+ +N S Y + + ++ DI+ NE EA +
Sbjct: 182 VAHHAS---ENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFET 238
Query: 218 EDLADC------MEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGV 271
+D+ + + K+ + VI T G + AT + + I++ G
Sbjct: 239 KDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGA 298
Query: 272 GDCFVGALAYYFKAG-QKGGNLDSC 295
GD FVG F + L C
Sbjct: 299 GDAFVGG----FLSQLVSDKPLTEC 319
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 74.2 bits (183), Expect = 5e-15
Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 33/258 (12%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
G N A L A + D+ G + ++R ++ + T
Sbjct: 81 GSAGNTAAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQG-VHYQTKPKGAFPPTARSMI 139
Query: 112 VISNKG--THQTNIIPGANTYLSASDIDAAKNLLLKAKVI-----MFQGETPWETTLYCL 164
++ G + T + GA L D++A +++ AKV ++ E L C
Sbjct: 140 FVTEDGERSMNTYL--GACVELGPEDVEA--DVVADAKVTYFEGYLWDPPRAKEAILDCA 195
Query: 165 SKLHVSLESRAKIIVNPS-PAV------YPLNPIVMILADIICINEQEAEIITDMKINNE 217
H + ++ + S L+ + DI+ N QEA +
Sbjct: 196 RIAH---QHGREMSMTLSDSFCVDRYRGEFLDLMRSGKVDIVFANRQEALSLY-----QT 247
Query: 218 EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVG 277
+D + + ++ C +T+ +G V + + +++ G GD F
Sbjct: 248 DDFEEALNRIAAD-CKIAAVTMSENGAVILKGRE--RYYVNAIRIREVVDTTGAGDLFAS 304
Query: 278 ALAYYFKAGQKGGNLDSC 295
Y + +G +L+ C
Sbjct: 305 GFLYGY---TQGRSLEDC 319
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 65.9 bits (161), Expect = 4e-12
Identities = 49/282 (17%), Positives = 87/282 (30%), Gaps = 51/282 (18%)
Query: 52 GKGANQCVAAAKLR---ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGV 108
G N KL S + +G+D G+ E K + T+++ + +TGV
Sbjct: 89 GSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEG-LATRFM-VAPGQSTGV 146
Query: 109 CSKVISNKG-THQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQG---ETPWETTLYCL 164
C+ +I+ K T T++ GA + A + + L
Sbjct: 147 CAVLINEKERTLCTHL--GACGSFRLPEDWTT--FASGALIFYATAYTLTATPKNALEVA 202
Query: 165 SKLHVSLESRAKIIVNPS-PAV--YPLNPIVMIL--ADIICINEQEAEIITDMKINNEED 219
H A +N S P + + +L +I+ NE+E + + +
Sbjct: 203 GYAHG--IPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAE 260
Query: 220 LAD-------------------CMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260
V++T G + V+ A + +
Sbjct: 261 KTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEV 320
Query: 261 HVEYPIESE------GVGDCFVGALAYYFKAG-QKGGNLDSC 295
V + +E G GD FVG F +G + C
Sbjct: 321 GVP-VVAAEKIVDTNGAGDAFVGG----FLYALSQGKTVKQC 357
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 60.1 bits (146), Expect = 2e-10
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT--------LGGSGVVY 246
+D+I N E E ++ ++ N E L V++ ++
Sbjct: 141 ASDMIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLL 200
Query: 247 ATRDN------PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
T D+ P + V GVGD G L G+
Sbjct: 201 VTADDAWHICRPLVDFGKRQPV-------GVGDLTSGLLLVNLLKGE 240
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A
{Trypanosoma brucei}
Length = 300
Score = 58.3 bits (141), Expect = 8e-10
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-------LGGSGVVYA 247
LADI+ N EA +++ + +N+ + + VII +Y+
Sbjct: 142 LADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVIIKSFREQENPTHLRFLYS 201
Query: 248 TRDNPRLKT--ITVDHVEYPIESEGVGDCFVGALAYYFK 284
++ + + G GD F L +
Sbjct: 202 VKEGSEAAVRRFSGVVPYHEGRYTGTGDVFAACLLAFSH 240
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 56.9 bits (138), Expect = 2e-09
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-------LGGSGVVYA 247
LA I N E EI+T + + + LL V++T VV
Sbjct: 152 LAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVV 211
Query: 248 TRDN------PRLKTITVDHVEYPIESEGVGDCFVGALA 280
T D+ R+KT G GD F L
Sbjct: 212 TADSVNVISHSRVKTDLK----------GTGDLFCAQLI 240
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 55.6 bits (134), Expect = 7e-09
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT--------------LG 240
LADII N+ EAE+++ KI+++E+ M+ L M +TV+IT +
Sbjct: 143 LADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVL 202
Query: 241 GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
GS + ++ I +D + G GD F L +
Sbjct: 203 GSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKH 248
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 55.0 bits (133), Expect = 9e-09
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKI---NNEEDLADCMEKLLDMKC 232
++ N + ++ AD+I N E + D + +E+L + + L D
Sbjct: 120 RLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGP 179
Query: 233 NTVIIT-------LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALA 280
VIIT + V R R +T ++ P G GD F +
Sbjct: 180 QVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYL--PAHYPGTGDTFTSVIT 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 5e-08
Identities = 79/439 (17%), Positives = 124/439 (28%), Gaps = 175/439 (39%)
Query: 8 VANLKDEADIV----VVGSCLVEF---------I-TYVQTLPKPEET--------VKGYH 45
V++L + + + V+ CL EF I L + +T +K Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 46 FEQRFSGKGANQCVAAAKLRASVALISKLGNDK----FG-----KSYLEELRK-YNSINT 95
+ + + ++ +A RA GN + FG Y EELR Y +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE-----GNAQLVAIFGGQGNTDDYFEELRDLYQT--- 179
Query: 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK------NLL--LKAK 147
Y L+ D+ ++ +S L + +DA K N+L L+
Sbjct: 180 -YHVLVGDLIK-FSAETLSE---------------LIRTTLDAEKVFTQGLNILEWLENP 222
Query: 148 VIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE 207
TP Y LS P PL I +I Q A
Sbjct: 223 -----SNTP--DKDYLLS----------------IPISCPL--IGVI---------QLAH 248
Query: 208 IITDMKIN--NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYP 265
+ K+ +L ++ T G+V A
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGA----------TGHSQGLVTAV----------------A 282
Query: 266 IESEGVGDCF----VGALAYYFKAG----QKGGNL--------DSCRLRNG--------R 301
I + F A+ F G + N DS G
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 302 GI-LKELQCLVARRVQLEGKNSSERKSNSAFVSWFKNNGNERGV--------FGLAMKEV 352
+ +++Q V + NS +S NG + V +GL
Sbjct: 343 NLTQEQVQDYVNKT------NSHLPAGKQVEISLV--NGAKNLVVSGPPQSLYGLN---- 390
Query: 353 YVPLPLHKLIVPISPDKCR 371
L L K P D+ R
Sbjct: 391 ---LTLRKAKAPSGLDQSR 406
Score = 42.3 bits (99), Expect = 2e-04
Identities = 59/343 (17%), Positives = 111/343 (32%), Gaps = 115/343 (33%)
Query: 22 SC----LVEFITYVQTLPKPEETVKGYH---FEQRFSGK-GANQCVAAAKLRASVALISK 73
SC +++ YV T + G+ G G +Q + A I+
Sbjct: 237 SCPLIGVIQLAHYVVTA-----KLLGFTPGELRSYLKGATGHSQGLVTA------VAIA- 284
Query: 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSA 133
+ +S+ +RK ++ ++ GV ++ P NT L
Sbjct: 285 ETDS--WESFFVSVRKAITV---LFFI------GVRC--------YEA--YP--NTSLPP 321
Query: 134 SDI-DAAKN--------L----LLKAKVIMFQGETPWETTLYCLSKLHVSLE-SRAKIIV 179
S + D+ +N L L + +V + +T + L ++ +SL ++V
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVV 379
Query: 180 N-PSPAVYPLNPIVMILADIICINEQE-AEI-ITDMKIN------------NEEDLADCM 224
+ P ++Y LN + L + + + I ++ K+ + L
Sbjct: 380 SGPPQSLYGLN---LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 225 EKLL-DMKCNTVIITLGGSGV-VYATRDN-----------PRL-KTITVDHVEYPIESEG 270
+ + D+ N V + VY T D R+ I V++
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE----- 491
Query: 271 VGDCFVGALAYYFKA---------GQKG-GNLDSCRLRNGRGI 303
FKA G G G L R ++G G+
Sbjct: 492 --------TTTQFKATHILDFGPGGASGLGVLTH-RNKDGTGV 525
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 52.5 bits (127), Expect = 6e-08
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLK 255
N E + I + ED +++L+ +++++ G G ++A+ + P +
Sbjct: 181 NHHELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGE 240
Query: 256 TI-TVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+V G GD V + G+
Sbjct: 241 VRNSV----------GAGDSVVAGFLAALQEGK 263
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 52.1 bits (126), Expect = 8e-08
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLK 255
N+ E E++ + +N++ D+ L+D +VI++LGG G +Y ++ P+ K
Sbjct: 181 NKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNPQGK 240
Query: 256 TI-TVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
+ TV G GD V + +G
Sbjct: 241 VVNTV----------GSGDSTVAGMVAGIASGL 263
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 50.2 bits (121), Expect = 4e-07
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDM-KCNTVIITLGGSGVVYATRDN------PRL 254
N++E + + ++ +D+ +++++ K V+++LG G + +N P +
Sbjct: 187 NQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPV 246
Query: 255 KTI-TVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
K+ TV G GD VGA+
Sbjct: 247 KSQSTV----------GAGDSMVGAMTLKLAENA 270
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 48.0 bits (115), Expect = 2e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 202 NEQEAEIITDMKINNE-EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PRL 254
N E + + ++ E L + + L +I++LG G P +
Sbjct: 205 NISELYQLLNQPLDESLESLKQAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVNIPTI 264
Query: 255 KTI-TVDHVEYPIESEGVGDCFVGALAY 281
+ V G GD V +
Sbjct: 265 SVLNPV----------GSGDSTVAGITS 282
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 47.2 bits (113), Expect = 4e-06
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 202 NEQEAEIITDMKINNE--EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN------PR 253
N +E E + + + + K + ++I+LG G + D P
Sbjct: 187 NLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRVKIPT 246
Query: 254 LKTI-TVDHVEYPIESEGVGDCFVGALAYYFKAGQ 287
++ V G GD + LAY
Sbjct: 247 IQAKNPV----------GSGDATIAGLAYGLAKDA 271
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 45.7 bits (109), Expect = 1e-05
Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 40/252 (15%)
Query: 52 GKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSK 111
GKG + +K + G+D L++ + IN ++ +T C
Sbjct: 40 GKGLHVSGVLSKFGIKNEALGIAGSD-NLDKLYAILKEKH-INHDFLVEAGT-STRECFV 96
Query: 112 VISNKGTHQTNII-PGANTYLSASDIDAAKNLLL----KAKVIMFQGETP--WETTLYC- 163
V+S+ T I G +S ++ D + K +++ G P + + +
Sbjct: 97 VLSDDTNGSTMIPEAGF--TVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKE 154
Query: 164 -LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLAD 222
L + + A + + S LN V + D I NE E I D K N+ E+
Sbjct: 155 LLRTVK---ATGAFLGCDNSGE--YLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENI- 208
Query: 223 CMEKLLDMKCNTVIITLGGSGVVYATRDN------PRLKTI-TVDHVEYPIESEGVGDCF 275
+ L K ++++LG G + A P+++ G GD F
Sbjct: 209 ---RTLAEKIPYLVVSLGAKGSICAHNGKLYQVIPPKVQERNDT----------GAGDVF 255
Query: 276 VGALAYYFKAGQ 287
VGA
Sbjct: 256 VGAFIAGLAMNM 267
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 44.9 bits (107), Expect = 2e-05
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 202 NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN-------PRL 254
+ + +D EKL + +++ + ATR+ +
Sbjct: 205 LRGNHASFLGVDLKTFDDYVKLAEKLAEKSQV-SVVSYEVKNDIVATREGVWLIRSKEEI 263
Query: 255 KTI-TVDHVEYPIESEGVGDCFVGALAY 281
T + G GD +V + Y
Sbjct: 264 DTSHLL----------GAGDAYVAGMVY 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 42/295 (14%), Positives = 87/295 (29%), Gaps = 71/295 (24%)
Query: 12 KDEADIVVVGSCLVEFITYVQT--LPKPEETVKGYHFEQRFSGKG------------ANQ 57
K+E D +++ V + L K EE V Q+F + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV------QKFVEEVLRINYKFLMSPIKTE 101
Query: 58 CVAAAKLRAS-VALISKLGND--KFGKSYLEELRKYNSINTKYIWLLQ-DVTTGV----- 108
+ + + +L ND F K + L+ Y + LL+ V
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ---ALLELRPAKNVLIDGV 158
Query: 109 --CSK------VISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETT 160
K V + +L+ + ++ + +L M Q
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVL-----EMLQ-------K 204
Query: 161 LYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINE-QEAEIITDMKINNEED 219
L ++ + SR+ N ++ I L ++ + ++ + N +
Sbjct: 205 LL--YQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKA 258
Query: 220 LADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGV 271
++ C ++ T V I++DH P E + +
Sbjct: 259 W-----NAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 41.0 bits (97), Expect = 3e-04
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 195 LADIICINEQEAEIITDMKINNEED---LADCMEKLLDMKCNTVII---TLGGSGVVYAT 248
AD+I N EA ++T D + ++ L + VI G +
Sbjct: 134 QADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLD 193
Query: 249 RDNPRLKTITVDHVEYPIESE---GVGDCFVGALA 280
V + G GD +A
Sbjct: 194 EAG------HVQYCGARRLPGHYNGTGDTLAAVIA 222
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis,
ribokinase family, phosphorylati structural genomics;
2.05A {Thermus thermophilus} SCOP: c.72.1.2
Length = 258
Score = 40.9 bits (97), Expect = 3e-04
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG 241
LAD++ N EAE + I ++ + + LL + V++ GG
Sbjct: 130 LADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLK-GG 175
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family,
phophorylation, transferase; 2.30A {Salmonella
typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Length = 288
Score = 36.7 bits (86), Expect = 0.008
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 195 LADIICINEQEAEIITDM-KINNEEDLADCMEKLLDMKCNTVIITLGG 241
+I N EA + D E+++ LL M C V++ GG
Sbjct: 154 QVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMK-GG 200
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase
superfamily, transferase; HET: ADP; 2.80A {Bacillus
subtilis}
Length = 271
Score = 36.7 bits (86), Expect = 0.009
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 195 LADIICINEQEAEIITDM-KINNEEDLADCMEKLLDMKCNTVIITLGG 241
LA +I N EA ++ M ++ +D+ + +K+ + V+IT GG
Sbjct: 134 LATVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVIT-GG 180
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase
(THID), thiaminase II, transferase; 2.68A {Saccharomyces
cerevisiae}
Length = 550
Score = 35.5 bits (82), Expect = 0.028
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 195 LADIICINEQEAEIIT--DMKINNEEDLADCMEKLLDM-KCNTVII 237
ADI+ N E + + K+N +D+ + L + KC+ +++
Sbjct: 152 FADILTPNIPECYKLLGEERKVNGLQDIFQIAKDLAKITKCSNILV 197
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI
biosynthetic protein; 1.80A {Mycobacterium avium subsp}
PDB: 3oi9_A 2g4r_A
Length = 164
Score = 29.9 bits (68), Expect = 0.76
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 205 EAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
+ E++ D + + + K +D + VI+T GG+G+ A D
Sbjct: 45 QPEVVAD-----GSPVGEALRKAIDDDVD-VILTSGGTGI--APTD 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 32 QTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASV 68
Q L K + ++K Y A+ A ++A++
Sbjct: 20 QALKKLQASLKLY----------ADDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADI 198
L KL ++ K+ A P + I A +
Sbjct: 22 LKKL----QASLKLYA-DDSA-----PALAIKATM 46
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural
genomics, PSI, protein structure initiative; 1.50A
{Corynebacterium diphtheriae} SCOP: c.57.1.1
Length = 167
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 205 EAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
++ + + + + + L IIT GG+G+ ++
Sbjct: 47 SEVVVPE----GYDTVVEAIATALKQGAR-FIITAGGTGI--RAKNQ 86
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for
structural genomics, PSI-2, protein structure
initiative, J hydrolase; 1.95A {Bacillus halodurans}
Length = 301
Score = 28.1 bits (62), Expect = 5.0
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 228 LDMKCNTVIITLGGSGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALA----- 280
+ + V+ G G + + ++P K ++ V Y +G +
Sbjct: 82 IKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYSTGLRLPLQPMIGVIGTAPPG 141
Query: 281 ---YYFKAGQKGGNLDSCRLRNG 300
G GGNLD+ ++ G
Sbjct: 142 EPINNGTPGPHGGNLDTKDIKPG 164
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 28.1 bits (63), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 235 VIITLGGSGVVYATRDNPR 253
V I+LG SGV A +NP
Sbjct: 289 VSISLGTSGVAAAISENPT 307
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 27.2 bits (61), Expect = 6.8
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 205 EAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
+ +E D+ + + + + +++++GG+GV RD
Sbjct: 67 GVVAVEA----DEVDIRNALNTAVIGGVD-LVVSVGGTGV--TPRD 105
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX
heterodimer, passenger RNA cleavage, RNAse, DN protein;
2.10A {Drosophila melanogaster} PDB: 3riu_C
Length = 298
Score = 27.2 bits (59), Expect = 8.3
Identities = 7/77 (9%), Positives = 24/77 (31%)
Query: 81 KSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140
+ Y EL + + + + L +D+T + + ++
Sbjct: 35 RIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLI 94
Query: 141 NLLLKAKVIMFQGETPW 157
+ +A + + + +
Sbjct: 95 AVNFRAVALELRDQDVY 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,785,445
Number of extensions: 345787
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 88
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)