RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8082
(379 letters)
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 308
Score = 117 bits (292), Expect = 9e-31
Identities = 104/281 (37%), Positives = 156/281 (55%), Gaps = 6/281 (2%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
A +VVVGSC+ + ++ LPK ET+ G+ F F GKGANQCV AA+L A +++ K+
Sbjct: 2 AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKV 61
Query: 75 GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
G D FG Y+E L++ + +D TG S +++N+G + I+ GAN L+
Sbjct: 62 GKDSFGNDYIENLKQNDISTEFTYQ-TKDAATGTASIIVNNEGQNIIVIVAGANLLLNTE 120
Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
D+ AA N++ +AKV++ Q E T+L L+ S K + NP+PA+ L+P
Sbjct: 121 DLRAAANVISRAKVMVCQLEITPATSLEALTMAR---RSGVKTLFNPAPAIADLDPQFYT 177
Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
L+D+ C NE EAEI+T + + + D + LL C VIITLG G V ++ P
Sbjct: 178 LSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEP 237
Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSC 295
K I + V +++ G GD FVGALA+Y A +L+
Sbjct: 238 KHIPTEKV-KAVDTTGAGDSFVGALAFYL-AYYPNLSLEDM 276
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 107 bits (267), Expect = 3e-27
Identities = 82/270 (30%), Positives = 132/270 (48%), Gaps = 8/270 (2%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+VV+GS + I +Q+ P P ETV G H++ F GKGANQ VAA + A++A I+ G+
Sbjct: 4 LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGD 63
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D G+S ++L N T ++ +TGV ++ +G + I GAN LS + +
Sbjct: 64 DSIGESVRQQLATDNIDITPVSV-IKGESTGVALIFVNGEGENVIGIHAGANAALSPALV 122
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA 196
+A + + A ++ Q E+P E+ + I+ L ++ L
Sbjct: 123 EAQRERIANASALLMQLESPLESVMAA----AKIAHQNKTIVALNPAPARELPDELLALV 178
Query: 197 DIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKT 256
DII NE EAE +T +++ N+ED A + L + TV+ITLG GV + N +
Sbjct: 179 DIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASV--NGEGQR 236
Query: 257 ITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ V+ +++ GD F GAL
Sbjct: 237 VPGFRVQ-AVDTIAAGDTFNGALITALLEE 265
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId:
2336]}
Length = 299
Score = 105 bits (263), Expect = 9e-27
Identities = 70/271 (25%), Positives = 110/271 (40%), Gaps = 17/271 (6%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRA-SVALISKLG 75
I VVGS ++ + V KP ET K GKGANQ V AK+ ++ +G
Sbjct: 5 ISVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIG 64
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
ND + +E K + + TG + G ++ I PGAN L
Sbjct: 65 NDDYSDLLIENYEKLGITGYIRVS----LPTGRAFIEVDKTGQNRIIIFPGANAELKKEL 120
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
ID ++ +++ Q E P+ETTL C + +I +P+P +N +
Sbjct: 121 IDWNTL--SESDILLLQNEIPFETTLECAKRF------NGIVIFDPAP-AQGINEEIFQY 171
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255
D + NE+E E ++ + EK L++ VI+ LG GV+ ++ K
Sbjct: 172 LDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNE---K 228
Query: 256 TITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+++ GD F GA A G
Sbjct: 229 KHFPTFKVKAVDTTAAGDVFNGAFAVALSEG 259
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase
{Thermotoga maritima, TM0067 [TaxId: 2336]}
Length = 333
Score = 92.4 bits (228), Expect = 1e-21
Identities = 47/298 (15%), Positives = 85/298 (28%), Gaps = 33/298 (11%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
+V G ++ P + + F+ + G AN A++ ++KL
Sbjct: 5 KVVTFGEIMLRLSP-----PDHKRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLP 59
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGT-------HQTNIIPGAN 128
N+ G + + T YI + ++ +++ + I
Sbjct: 60 NNPLGD-AAAGHLRKFGVKTDYIARGGNRIGIYFLEIGASQRPSKVVYDRAHSAISEAKR 118
Query: 129 TYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCL-----SKLHVSLESRAKIIVNPSP 183
I + + G+ L + VS + + +
Sbjct: 119 EDFDWEKILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKE 178
Query: 184 AVYPLNPIVMILADIICINEQEAEIITDM----------KINNEEDLADCMEKLLDMKCN 233
+ M D++ NE++ E + + K+N E E
Sbjct: 179 EAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFK 238
Query: 234 TVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESE-----GVGDCFVGALAYYFKAG 286
TV ITL S + + H E G GD F GAL Y G
Sbjct: 239 TVGITLRESISATVNYWSVMVFENGQPHFSNRYEIHIVDRVGAGDSFAGALIYGSLMG 296
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 91.6 bits (226), Expect = 2e-21
Identities = 45/268 (16%), Positives = 84/268 (31%), Gaps = 16/268 (5%)
Query: 25 VEFITYVQTLPKPE--ETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKS 82
++ +++ + GKG N +A +KL +G GK
Sbjct: 11 LDREIFIEDFQVNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKI 69
Query: 83 YLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA---- 138
+EELRK + ++ + T ++I K I ++ D++
Sbjct: 70 LVEELRKIS-KLITTNFVYVEGETRENIEIIDEKN-KTITAINFPGPDVTDMDVNHFLRR 127
Query: 139 AKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI--LA 196
K L K ++ G P ++L L + V L I
Sbjct: 128 YKMTLSKVDCVVISGSIPPGVNEGICNELV-RLARERGVFVFVEQTPRLLERIYEGPEFP 186
Query: 197 DII-CINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255
+++ + + +D EKL + +++ + ATR+
Sbjct: 187 NVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEK-SQVSVVSYEVKNDIVATREGVW-- 243
Query: 256 TITVDHVEYPIESEGVGDCFVGALAYYF 283
I G GD +V + YYF
Sbjct: 244 LIRSKEEIDTSHLLGAGDAYVAGMVYYF 271
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 90.2 bits (222), Expect = 5e-21
Identities = 38/271 (14%), Positives = 68/271 (25%), Gaps = 9/271 (3%)
Query: 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
++V G LV + +P E G N VA A+L V + ++G
Sbjct: 3 EVVTAGEPLVALVP-----QEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVG 57
Query: 76 NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
D+ G E LR ++ + T + + G+ A
Sbjct: 58 EDELGAMVEERLRAEG-VDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPG 116
Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
L + + S + R + V+
Sbjct: 117 AFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEA 176
Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255
+ +++ + E E L + V++ G G
Sbjct: 177 RGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEG 236
Query: 256 TITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ P+ G GD F G
Sbjct: 237 SAFAVEAVDPV---GAGDAFAAGYLAGAVWG 264
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
maritima [TaxId: 2336]}
Length = 288
Score = 84.2 bits (207), Expect = 5e-19
Identities = 34/270 (12%), Positives = 70/270 (25%), Gaps = 34/270 (12%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
I +G + + E G G + ++ L +I+K
Sbjct: 9 ITFIGHVSKDVNV----VDGKREIAYG--------GGVVMGAITSSLLGVKTKVITKCTR 56
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
+ K LR + ++ T + + + + A + SD+
Sbjct: 57 EDVSK--FSFLRDNG-VEVVFLK---SPRTTSIENRYGSDPDTRESFLISAADPFTESDL 110
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSK-----LHVSLESRAKIIVNPSPAVYPLNPI 191
+ + + + GE P + K R + +
Sbjct: 111 AFIEGEAVHINPL-WYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEK 169
Query: 192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
+ D+ ++ +EAE +T E +I+ SGV+ +
Sbjct: 170 YLKYLDLFKVDSREAETLTGTNDLRESCRIIR------SFGAKIILATHASGVIVFDGNF 223
Query: 252 PRLKTITVDHVEYPIESEGVGDCFVGALAY 281
+ G GD A
Sbjct: 224 YEASFRSWS----LEGRTGRGDTCTAAFLV 249
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 82.2 bits (201), Expect = 3e-18
Identities = 44/276 (15%), Positives = 79/276 (28%), Gaps = 12/276 (4%)
Query: 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
A ++ +G L+EF P +FE+ +G AN CVA K +I+K+
Sbjct: 1 AKLITLGEILIEFNA-----LSPGPLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKV 55
Query: 75 GNDKFGKSYLEELRKYNSINTK-YIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSA 133
G+D+FG + +E LR + I + ++ +
Sbjct: 56 GDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKL 115
Query: 134 SDIDAAKNLLLKAKVI---MFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNP 190
S D + + A ++ ++ +
Sbjct: 116 SPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNRSFDTNIRLKLWSAEEAK 175
Query: 191 IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250
++ + D KI E D K +++ LG G +
Sbjct: 176 REILKLLSKFHLKFLITDTDDSKIILGESDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDG 235
Query: 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ VE G GD G + G
Sbjct: 236 KKYYSSGYQVPVEDVT---GAGDALGGTFLSLYYKG 268
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 304
Score = 81.8 bits (200), Expect = 5e-18
Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 22/286 (7%)
Query: 17 IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
+ V+G V+ + P+ + + + + G AN V A+L I LG+
Sbjct: 3 VWVIGDASVDLV------PEKQNS-----YLKCPGGASANVGVCVARLGGECGFIGCLGD 51
Query: 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
D G+ +L ++ + N ++ ++ L D+T+ V ++ G + S
Sbjct: 52 DDAGR-FLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQ 110
Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA 196
D + G T CL E+ ++ + + I
Sbjct: 111 DLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPE 170
Query: 197 DIICI----NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252
I + + +++ D L D+ C+T II+LG G + T +
Sbjct: 171 LIARSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDTTIISLGADGALLITAEGE 230
Query: 253 RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298
V +++ G GD FVG L + + D L
Sbjct: 231 FHFPAPRVDV---VDTTGAGDAFVGGLLF---TLSRANCWDHALLA 270
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB
{Bacillus halodurans [TaxId: 86665]}
Length = 306
Score = 81.7 bits (200), Expect = 5e-18
Identities = 41/263 (15%), Positives = 83/263 (31%), Gaps = 10/263 (3%)
Query: 25 VEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYL 84
+++I V+ + ++ GKG N +L + LG G Y+
Sbjct: 11 IDYIVQVENFQ-QGVVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGGF-TGA-YV 67
Query: 85 EELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLL 144
+ I +I + D V I K + N + L
Sbjct: 68 RNALEKEEIGLSFIEVEGDTRINVK---IKGKQETELNGTAPLIKKEHVQALLEQLTELE 124
Query: 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQ 204
K V++ G P + + V + L+ ++ I N
Sbjct: 125 KGDVLVLAGSVPQAMPQTIYRSM-TQIAKERGAFVAVDTSGEALHEVLAAKPSFIKPNHH 183
Query: 205 EAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEY 264
E + I + ED +++L+ +++++ G G ++A+ + + V
Sbjct: 184 ELSELVSKPIASIEDAIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNVPSGEVRN 243
Query: 265 PIESEGVGDCFVGALAYYFKAGQ 287
+ G GD V + G+
Sbjct: 244 SV---GAGDSVVAGFLAALQEGK 263
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC
{Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 77.4 bits (189), Expect = 1e-16
Identities = 38/269 (14%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 25 VEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYL 84
++ + L K + + + GKG N L V LG +++
Sbjct: 11 IDISYLLDHL-KLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGGFHG--AFI 67
Query: 85 EELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA----AK 140
K +I + + ++ + I A +S +I
Sbjct: 68 ANELKKANIPQAFTSIKEETRDSIAILH-----EGNQTEILEAGPTVSPEEISNFLENFD 122
Query: 141 NLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADII- 199
L+ +A+++ G +L ++ ++ + + +
Sbjct: 123 QLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKPYLI 182
Query: 200 --CINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTI 257
+ E E + D N + + K + ++I+LG G + D I
Sbjct: 183 KPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRVKI 242
Query: 258 TVDHVEYPIESEGVGDCFVGALAYYFKAG 286
+ P+ G GD + LAY
Sbjct: 243 PTIQAKNPV---GSGDATIAGLAYGLAKD 268
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 342
Score = 65.2 bits (157), Expect = 3e-12
Identities = 56/309 (18%), Positives = 89/309 (28%), Gaps = 37/309 (11%)
Query: 14 EADIVVVGSCLVEFITYV--------------------QTLPKPEETVKGYHFEQRFSGK 53
E + +G+ L++ V + +E VK + E G
Sbjct: 3 ENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGS 62
Query: 54 GANQCVAAAKL----RASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVC 109
N A + + +G DKFG+ + + + Y Q T
Sbjct: 63 TQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAA 122
Query: 110 SKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHV 169
N+ D++ L+ KA+V G + L H
Sbjct: 123 CITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHH 182
Query: 170 SLESRAKIIVNPSPAVYPL-----NPIVMILADIICINEQEAEIITD------MKINNEE 218
+ E+ +N S VM DI+ NE EA I
Sbjct: 183 ASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIA 242
Query: 219 DLADCMEKLLDMKCNTVIITLGGSGVVYATRDN-PRLKTITVDHVEYPIESEGVGDCFVG 277
+ K+ + VI T G + AT + D E I++ G GD FVG
Sbjct: 243 KKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKE-IIDTNGAGDAFVG 301
Query: 278 ALAYYFKAG 286
+
Sbjct: 302 GFLSQLVSD 310
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii
[TaxId: 5811]}
Length = 350
Score = 60.2 bits (144), Expect = 1e-10
Identities = 41/322 (12%), Positives = 79/322 (24%), Gaps = 55/322 (17%)
Query: 16 DIVVVGSCLVEFITYV--------------QTLPKPE-----ETVKGYHFEQRFSGKGAN 56
+ +G+ +++ + V TL PE T+ ++ G N
Sbjct: 5 RVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTLDQFNPTSLPGGSALN 64
Query: 57 QCVAAAKLR---ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVI 113
KL S + +G+D G+ E K + +
Sbjct: 65 SVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVA----PGQSTGVCAV 120
Query: 114 SNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES 173
+T D +
Sbjct: 121 LINEKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIP 180
Query: 174 RAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLL 228
A +N S +++ +I+ NE+E + + +
Sbjct: 181 NAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKTALSTANK 240
Query: 229 D-------------------MKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-----EY 264
+ V++T G + V+ A + + V E
Sbjct: 241 EHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEK 300
Query: 265 PIESEGVGDCFVGALAYYFKAG 286
+++ G GD FVG Y G
Sbjct: 301 IVDTNGAGDAFVGGFLYALSQG 322
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId:
562]}
Length = 288
Score = 47.5 bits (112), Expect = 1e-06
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 21/130 (16%)
Query: 171 LESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM 230
+ K + + +DII N E EI+ + +NN E+ +L+
Sbjct: 115 MGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQ 174
Query: 231 KCNTVIITLGGSG--------VVYATRDN------PRLKTITVDHVEYPIESEGVGDCFV 276
V++ ++ T D P + V GVGD
Sbjct: 175 GPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPV-------GVGDVTS 227
Query: 277 GALAYYFKAG 286
G L G
Sbjct: 228 GLLLVKLLQG 237
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId:
9940]}
Length = 309
Score = 47.1 bits (111), Expect = 1e-06
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 181 PSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240
P + V+ +ADII N+ EAE++T KI+++E+ + M+ L M +TV+IT
Sbjct: 126 PDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSS 185
Query: 241 --------------GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
GS A + + I ++ + G GD F L +
Sbjct: 186 NLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKH 245
Query: 287 QK 288
Sbjct: 246 PN 247
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
thermophilus [TaxId: 274]}
Length = 258
Score = 37.9 bits (87), Expect = 0.001
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 193 MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP 252
LAD++ N EAE + I ++ + + LL + V++ G A
Sbjct: 128 FPLADLVTPNRLEAEALLGRPIRTLKEAEEAAKALLALGPKAVLLKGGHLEGEEAVDLLA 187
Query: 253 RLKTITVDHVE--YPIESEGVGDCFVGALAYYFKAGQ 287
+ + + G G A+A G+
Sbjct: 188 TRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGR 224
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 28.0 bits (61), Expect = 2.0
Identities = 8/97 (8%), Positives = 19/97 (19%), Gaps = 1/97 (1%)
Query: 188 LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK-CNTVIITLGGSGVVY 246
L D+I + Q TD + + L G+
Sbjct: 27 LGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTV 86
Query: 247 ATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYF 283
+ + + + + +
Sbjct: 87 YCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIY 123
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 27.1 bits (59), Expect = 2.9
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 221 ADCMEKLLDMKCNTVIITLGGSGVVY-ATRDNPRLKTITVDHVEYPIESEGVGDCF 275
A +E L++ + + + G +Y +N + + + +E+P D F
Sbjct: 93 ASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTF 148
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 27.0 bits (59), Expect = 3.4
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 8 VANLKDEADIVVVGSCLVE 26
+ AD ++VG+ + E
Sbjct: 202 AREMLRYADTIIVGNVIYE 220
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 27.1 bits (59), Expect = 3.5
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 11 LKDEADIVVVGSCLVEFITYVQTLPKPEETVK 42
++ A + GS +V+ I + L P++ +
Sbjct: 224 VRAGAAGAISGSAIVKIIE--KNLASPKQMLA 253
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 26.7 bits (58), Expect = 4.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 HCVANLKDEADIVVVGSCLVEFIT 29
H V+ LK+ A+ VVVGS LV+ I
Sbjct: 205 HVVSLLKEGANGVVVGSALVKIIG 228
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Acanthamoeba castellanii, actophorin [TaxId: 5755]}
Length = 134
Score = 26.0 bits (57), Expect = 4.3
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 198 IICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITL 239
+N E++ + D +L + C I
Sbjct: 25 TFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDY 66
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 26.0 bits (57), Expect = 5.2
Identities = 5/70 (7%), Positives = 20/70 (28%)
Query: 134 SDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVM 193
+ I+ A + + ++ K++ N S ++
Sbjct: 99 TTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVID 158
Query: 194 ILADIICINE 203
++ + ++
Sbjct: 159 LIKHMQKVDS 168
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 26.2 bits (57), Expect = 5.6
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 8 VANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKG 43
+ AD++VVG+ + E K VKG
Sbjct: 196 AKQYAEHADVIVVGNAVYEDF---DRALKTVAAVKG 228
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 96
Score = 24.8 bits (54), Expect = 7.1
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQC 309
N +KT V HV+ + D + Y ++ + +G
Sbjct: 21 YNETVKTGHVTHVK-------LSDDLLHVTVYLDCYNREQIDRVVGAFNQAKG---VFSR 70
Query: 310 LVARRVQL 317
++A + L
Sbjct: 71 VLAHNLYL 78
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Length = 124
Score = 25.2 bits (55), Expect = 7.6
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 198 IICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVII 237
+ I E++ +++ + + + L +C I
Sbjct: 27 VYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIY 66
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 26.1 bits (56), Expect = 8.2
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 230 MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCF 275
K VI+ GG+ +++ R T Y I G G
Sbjct: 204 FKAKAVILATGGATLLFRPRSTGEAAGRTW----YAIFDTGSGYYM 245
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,409,967
Number of extensions: 64640
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 31
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)