BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8083
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3W3S|A Chain A, Crystal Structure Of A. Aeolicus Trnasec In Complex With
M. Kandleri Serrs
Length = 527
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 162 QVAEYLSRQHT--SDPTESYR-RKELIHATKQVTKEL 195
+V E+ +H ++P E+YR R+EL+ ATK+V +EL
Sbjct: 360 RVNEFQRIEHVWIAEPEEAYRIRRELLEATKRVAEEL 396
>pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|4 Chain 4, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|4 Chain 4, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|E Chain E, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 409
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 182 KELIHATKQVTKELMDLLNQDRSPLCNTRPQHILDPSIQRHLTHFSLISHGFGSP 236
+E + KQ + L +D +P P+H+L+ S++ + HF + GF P
Sbjct: 284 RESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPP 338
>pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
pdb|2ZC8|B Chain B, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
Length = 369
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 8 RQKKCKIEARRPGL------SVLLCSPRQGTNVDENSAF-IGDLPLLKRVSAPSDVFCSV 60
R+ K KI +PG +V P D NSA+ + +L LKR+ +
Sbjct: 158 RRIKLKI---KPGWDYEVLKAVREAFPEATLTADANSAYSLANLAQLKRLDELRLDYIEQ 214
Query: 61 PGRLSLLSSTSKYKVTVGEVQRRLSPPECLNASLLGGV-LRRAKSKNGGRLLREKLEKIG 119
P L +K +QR LS P CL+ SL G R+A GR+ K ++G
Sbjct: 215 PLAYDDLLDHAK-------LQRELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLG 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,199,851
Number of Sequences: 62578
Number of extensions: 304627
Number of successful extensions: 604
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 4
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)