Query psy8083
Match_columns 303
No_of_seqs 91 out of 112
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gm3_A Protein tyrosine kinase 39.6 87 0.003 27.0 7.1 79 104-199 54-135 (153)
2 1k04_A FADK 1, focal adhesion 38.6 83 0.0029 27.3 6.9 78 105-199 65-145 (162)
3 2gu0_A Nonstructural protein 2 30.4 10 0.00035 35.7 -0.1 14 222-235 209-222 (312)
4 4g0a_A Non-structural protein 30.0 11 0.00037 35.6 -0.1 22 149-170 97-118 (317)
5 3o3m_A Alpha subunit 2-hydroxy 25.1 4.3E+02 0.015 24.8 10.6 118 111-255 123-247 (408)
6 1sd4_A Penicillinase repressor 24.9 1.9E+02 0.0066 21.5 6.4 38 90-127 25-66 (126)
7 4fla_A Regulation of nuclear P 24.6 2.1E+02 0.0071 24.1 7.0 35 79-117 43-79 (152)
8 3lb6_A Interleukin-13, IL-13; 20.0 1.3E+02 0.0043 25.3 4.6 75 187-277 28-107 (132)
9 2l6f_A Focal adhesion kinase 1 24.8 23 0.00079 32.1 0.0 84 103-203 40-129 (215)
10 1dow_A Alpha-catenin; four-hel 18.4 1.2E+02 0.0041 26.8 4.4 28 173-200 57-84 (205)
No 1
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=39.63 E-value=87 Score=26.97 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=52.2
Q ss_pred cccchHHHHHHHHHcC---CcCCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhcCChhhhHH
Q psy8083 104 SKNGGRLLREKLEKIG---LNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSRQHTSDPTESYR 180 (303)
Q Consensus 104 sKnGG~~LRe~Lek~G---l~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r~~~~~p~e~~~ 180 (303)
.|+=|-.||+.|.... -.+|...++. +|+.-.-|.+||.++++. -.+| .+.....-..+.
T Consensus 54 VK~VGl~LR~Ll~sVd~~~~~lp~s~~~E---------Iema~k~L~kDM~eLIs~----MkLA----qq~~~TtL~eEy 116 (153)
T 3gm3_A 54 VKNVGLTLRKLIGSVDDLLPSLPSSSRTE---------IEGTQKLLNKDLAELINK----MRLA----QQNAVTSLSEEC 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHH---------HHHHHHHHHHHHHHHHHH----HHHH----HHTTTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHHHHHHHHHHH----HHHH----HHhcCccHHHHH
Confidence 4677899999988544 3477765544 688888899999999862 2223 333233455677
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8083 181 RKELIHATKQVTKELMDLL 199 (303)
Q Consensus 181 r~~~l~aakqi~~e~~dlL 199 (303)
|+.|+.++..+.-...++|
T Consensus 117 rr~MLsaaH~LA~DaKNLl 135 (153)
T 3gm3_A 117 KRQMLTASHTLAVDAKNLL 135 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899988877654444443
No 2
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=38.58 E-value=83 Score=27.28 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHHcC---CcCCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhcCChhhhHHH
Q psy8083 105 KNGGRLLREKLEKIG---LNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSRQHTSDPTESYRR 181 (303)
Q Consensus 105 KnGG~~LRe~Lek~G---l~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r~~~~~p~e~~~r 181 (303)
|+=|-.||+.|...+ -.||+..|+. +|..-.-|.+||.++++. -.+|+ +.....-..+.|
T Consensus 65 K~VGl~LR~Ll~sVd~~~~~lp~s~~rE---------Vema~k~L~kDM~eLis~----mklaq----~~~~TtL~~EyR 127 (162)
T 1k04_A 65 KEVGLALRTLLATVDETIPLLPASTHRE---------IEMAQKLLNSDLGELINK----MKLAQ----QYVMTSLQQEYK 127 (162)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHH---------HHHHHHHHHHHHHHHHHH----HHHHH----HTTTSSSHHHHH
T ss_pred HHHHHHHHHHHHhHhhhhhccCHHhhHH---------HHHHHHHHHHHHHHHHHH----HHHhh----hccCccHHHHHH
Confidence 788999999996544 3477766654 566667799999999862 22333 332334556678
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8083 182 KELIHATKQVTKELMDLL 199 (303)
Q Consensus 182 ~~~l~aakqi~~e~~dlL 199 (303)
+.|+.++..+.-....+|
T Consensus 128 k~mLsaah~LA~daKNLl 145 (162)
T 1k04_A 128 KQMLTAAHALAVDAKNLL 145 (162)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHhcccHH
Confidence 899888777654444443
No 3
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=30.39 E-value=10 Score=35.67 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=12.5
Q ss_pred hhhhhhhcccCCCh
Q psy8083 222 HLTHFSLISHGFGS 235 (303)
Q Consensus 222 ~L~~FSliTHGFG~ 235 (303)
.+-+|.-||||+|+
T Consensus 209 qyNkFAvItHGkgH 222 (312)
T 2gu0_A 209 NFNKFAAISHGKRH 222 (312)
T ss_dssp HSTTEEEECSSSSE
T ss_pred hhcceEEEecCCcc
Confidence 46789999999999
No 4
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=29.99 E-value=11 Score=35.59 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=15.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHh
Q psy8083 149 DFGYVCETEFPARQVAEYLSRQ 170 (303)
Q Consensus 149 Df~~lce~eFP~k~lAe~l~r~ 170 (303)
+...+...-+.++.|-..+.|-
T Consensus 97 ~~~~il~~vvsVRHLEnL~~R~ 118 (317)
T 4g0a_A 97 NVSNVLSRVVSIRHLENLVIRK 118 (317)
T ss_dssp THHHHHHCBCCHHHHHHHHHHH
T ss_pred HHHHHHhHeeeHHHHHhHHhhh
Confidence 3455677778888887777774
No 5
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=25.14 E-value=4.3e+02 Score=24.78 Aligned_cols=118 Identities=13% Similarity=0.198 Sum_probs=68.4
Q ss_pred HHHHHHHc-CCc-----CCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhcCChhhhHHHHHH
Q psy8083 111 LREKLEKI-GLN-----LPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSRQHTSDPTESYRRKEL 184 (303)
Q Consensus 111 LRe~Lek~-Gl~-----LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r~~~~~p~e~~~r~~~ 184 (303)
+-+.|.+. |++ +|..+.....-.. ...+.+|-..|.+.+.+++...|....|.+.+-...
T Consensus 123 ~~e~l~~~~~ip~~~ld~P~~~~~~~~~~~-~~y~~~el~~l~~~LE~~tG~ki~~e~L~eai~~~N------------- 188 (408)
T 3o3m_A 123 WYENISRELDIPLIMIDTTFNNEDEVTQSR-IDYIKAQFEEAIKQLEIISGKKFDPKKFEEVMKISA------------- 188 (408)
T ss_dssp HHHHHHHHHTCCEEEECCCCBCSSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-------------
Confidence 33555554 444 6776521111111 244666888899999999999999988888764321
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCChhhhhhhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHH
Q psy8083 185 IHATKQVTKELMDLLN-QDRSPLCNTRPQHILDPSIQRHLTHFSLISHGFGSPAIVAALTAIQNFLTESLKH 255 (303)
Q Consensus 185 l~aakqi~~e~~dlL~-q~rsPl~~~rP~~ile~~iq~~L~~FSliTHGFG~pai~aalt~~q~~L~e~lk~ 255 (303)
.++..++++.++.. ...+|+++ .| . +..+..++--+|.+.....+..+-.-|.+.++.
T Consensus 189 --~~r~~~~~~~~l~~~~~p~pisg------~d----~-~~~~~~~~~~~~~~~~~~~~~~l~~el~~r~~~ 247 (408)
T 3o3m_A 189 --ENGRLWKYSMSLPADSSPSPMNG------FD----L-FTYMAVIVCARGKKETTEAFKLLIEELEDNMKT 247 (408)
T ss_dssp --HHHHHHHHHTTTTTTCSSCSSCG------GG----H-HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcccCCCCccH------HH----H-HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHc
Confidence 23356678877765 55555532 11 1 111222233368888888777766666655543
No 6
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=24.88 E-value=1.9e+02 Score=21.53 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=21.9
Q ss_pred cchhhhhhhhhhc--ccccchHHHHHHHHHcCCc--CCcccc
Q psy8083 90 LNASLLGGVLRRA--KSKNGGRLLREKLEKIGLN--LPAGRR 127 (303)
Q Consensus 90 LNaS~Lg~~LRRa--KsKnGG~~LRe~Lek~Gl~--LpagRR 127 (303)
+..+-|+..|... =++..-..+-++|++.|+= -+.+|+
T Consensus 25 ~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~ 66 (126)
T 1sd4_A 25 VSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp EEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCe
Confidence 4555555555321 1355566667789999985 344543
No 7
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.57 E-value=2.1e+02 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=22.7
Q ss_pred hhhhhcC--CCcccchhhhhhhhhhcccccchHHHHHHHHH
Q psy8083 79 EVQRRLS--PPECLNASLLGGVLRRAKSKNGGRLLREKLEK 117 (303)
Q Consensus 79 EIrRRls--~PE~LNaS~Lg~~LRRaKsKnGG~~LRe~Lek 117 (303)
.||+||. |||--+.| +|.+=|.|..|+.|-+..++
T Consensus 43 ~vrq~Ia~LP~eVsd~s----~l~klkDk~~~e~l~~~vee 79 (152)
T 4fla_A 43 TVRQKIASLPQEVQDVS----LLEKITDKEAAERLSKTVDE 79 (152)
T ss_dssp HHHHHHHTSCGGGTCGG----GGGGCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCHH----HHHHcccHHHHHHHHHHHHH
Confidence 4666665 57777766 45666777777766666654
No 8
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=19.96 E-value=1.3e+02 Score=25.33 Aligned_cols=75 Identities=25% Similarity=0.414 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCChhhhhhhhhhhhcccCCChHHHHHHHHHHHHH-----HHHHHHHHhhhCC
Q psy8083 187 ATKQVTKELMDLLNQDRSPLCNTRPQHILDPSIQRHLTHFSLISHGFGSPAIVAALTAIQNF-----LTESLKHLDKMYP 261 (303)
Q Consensus 187 aakqi~~e~~dlL~q~rsPl~~~rP~~ile~~iq~~L~~FSliTHGFG~pai~aalt~~q~~-----L~e~lk~l~k~~~ 261 (303)
+-+.++.|+..+=..-+.|+.|.. |--=-..|-| ..|+|++++.|+ ++...|.|....+
T Consensus 28 aLkELIeELvNITqnqkapLCNGS------------MVWSVnlt~~----~~CaAleSL~NiS~C~aIqktqR~L~~lc~ 91 (132)
T 3lb6_A 28 ALRELIEELVNITQNQKAPLCNGS------------MVWSINLTAG----MYCAALESLINVSGCSAIEKTQRMLSGFCP 91 (132)
T ss_dssp HHHHHHHHHHHHHHSCSSCGGGGC------------EEECCCSSSS----CHHHHHHHHTTCTTCSTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhccCCCCCCcCCc------------eEEEEeccch----HHHHHHHHhhcccccHHHHHHHHHHhcccC
Confidence 445777788775333357776532 1111123333 289999999888 8889999988887
Q ss_pred CCCCCCCCCcCCccCC
Q psy8083 262 SGNSLSVSSSQGLQDT 277 (303)
Q Consensus 262 ~~~~~~~~~~~~~~~~ 277 (303)
...+..+-++.+..|+
T Consensus 92 ~k~~a~qVss~~~~DT 107 (132)
T 3lb6_A 92 HKVSAGQFSSLHVRDT 107 (132)
T ss_dssp SCCCTTCCSSCCCCSE
T ss_pred CCCcccccccccCcch
Confidence 5433333334444443
No 9
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=24.79 E-value=23 Score=32.08 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=52.5
Q ss_pred ccccchHHHHHHHHHcC---CcCCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhcCChhhhH
Q psy8083 103 KSKNGGRLLREKLEKIG---LNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSRQHTSDPTESY 179 (303)
Q Consensus 103 KsKnGG~~LRe~Lek~G---l~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r~~~~~p~e~~ 179 (303)
+.|+=|-.||+.|.... -.||+-.|+. +|....-|.+||.+++..- .+|+ +....+-..+
T Consensus 40 lVK~VGl~LR~LL~sVDel~~~Lp~Sa~rE---------IEma~KvLnKDM~ELIsaM----KLaq----q~~~TtL~~E 102 (215)
T 2l6f_A 40 MVKEVGLALRTLLATVDESLPVLPASTHRE---------IEMAQKLLNSDLAELINKM----KLAQ----QYVMTSLQQE 102 (215)
Confidence 56889999999996654 3477665554 5778888999999998632 2233 1112223445
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhccC
Q psy8083 180 RRKELIHATKQVT---KELMDLLNQDR 203 (303)
Q Consensus 180 ~r~~~l~aakqi~---~e~~dlL~q~r 203 (303)
.|+.|+.++..+. +-|-|...+.|
T Consensus 103 yRK~MLsaaH~LAmdaKNLlDvVD~aR 129 (215)
T 2l6f_A 103 YKKQMLTAAHALAVDAKNLLDVIDQAR 129 (215)
Confidence 6778887776654 33444444433
No 10
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=18.35 E-value=1.2e+02 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=22.4
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy8083 173 SDPTESYRRKELIHATKQVTKELMDLLN 200 (303)
Q Consensus 173 ~~p~e~~~r~~~l~aakqi~~e~~dlL~ 200 (303)
.||.....|..++.+++.++...+.+|-
T Consensus 57 ~dP~s~~~R~~lV~aaR~lLs~vtrlLl 84 (205)
T 1dow_A 57 DDPCSSVKRGNMVRAARALLSAVTRLLI 84 (205)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999999988877665543
Done!