Query psy8083
Match_columns 303
No_of_seqs 91 out of 112
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:58:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8083.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8083hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sd4a_ a.4.5.39 (A:) Penicill 55.6 15 0.0011 27.4 6.7 91 74-181 20-112 (122)
2 d1ik0a_ a.26.1.2 (A:) Interleu 50.4 14 0.001 28.3 5.6 76 187-278 9-89 (113)
3 d1k04a_ a.24.14.1 (A:) FAT dom 46.8 20 0.0015 28.5 6.3 80 104-200 47-129 (142)
4 d1okra_ a.4.5.39 (A:) Methicil 39.2 18 0.0013 26.4 4.6 89 74-180 21-112 (120)
5 d1t01a1 a.24.9.1 (A:1-125) Vin 37.4 23 0.0017 27.2 5.1 27 173-199 97-123 (125)
6 d1r8da_ a.6.1.3 (A:) Multidrug 36.5 65 0.0048 22.7 8.8 51 114-169 21-71 (109)
7 d1dova_ a.24.9.1 (A:) alpha-ca 27.4 38 0.0027 27.3 5.1 29 173-201 32-60 (181)
8 d2nu7b2 d.142.1.4 (B:1-238) Su 22.7 19 0.0014 29.4 2.3 32 112-152 9-40 (238)
9 d1sj7a1 a.215.1.1 (A:488-654) 21.3 37 0.0027 27.6 3.7 25 183-208 120-144 (167)
10 d2p5ka1 a.4.5.3 (A:2-64) Argin 19.5 42 0.0031 22.8 3.2 20 106-125 19-38 (63)
No 1
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=55.61 E-value=15 Score=27.38 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=50.2
Q ss_pred eEecchhhhhcCCCcccchhhhhhhhhhcccccchHHHHHHHHHcCCcCCcccccccccccchhhcHHHHHHHHHHHHHH
Q psy8083 74 KVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLEKIGLNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYV 153 (303)
Q Consensus 74 kVTV~EIrRRls~PE~LNaS~Lg~~LRRaKsKnGG~~LRe~Lek~Gl~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~l 153 (303)
.+|+.||..++..+=.+.-+.+ .++-..|.+.|+- .|++..+...+++++..|.. ++.=+..+
T Consensus 20 ~~t~~ei~~~l~~~~~~~~tTv-------------~T~L~rL~~Kg~l---~~~~~gr~~~Y~~~v~~~~~-~~~~~~~~ 82 (122)
T d1sd4a_ 20 SVSANEIVVEIQKYKEVSDKTI-------------RTLITRLYKKEII---KRYKSENIYFYSSNIKEDDI-KMKTAKTF 82 (122)
T ss_dssp SEEHHHHHHHHHTTSCCCHHHH-------------HHHHHHHHHTTSE---EEEEETTEEEEEECSCHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHhhccCCCcHhHH-------------HHHHHHHHhhhce---eeeccCCeEEEeecCCHHHH-HHHHHHHH
Confidence 4788999888865544444444 4444567777775 35555556677887765443 33333344
Q ss_pred HhhcCC--hHHHHHHHHHhhcCChhhhHHH
Q psy8083 154 CETEFP--ARQVAEYLSRQHTSDPTESYRR 181 (303)
Q Consensus 154 ce~eFP--~k~lAe~l~r~~~~~p~e~~~r 181 (303)
.+..|. ...+...++.....++.++...
T Consensus 83 ~~~~~~gs~~~lv~~~~~~~~ls~~el~eL 112 (122)
T d1sd4a_ 83 LNKLYGGDMKSLVLNFAKNEELNNKEIEEL 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhCCCCCHHHHHHH
Confidence 443332 3444444444433455555443
No 2
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.42 E-value=14 Score=28.27 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCChhhhhhhhhhhhcccCCChHHHHHHHHHHHHH-----HHHHHHHHhhhCC
Q psy8083 187 ATKQVTKELMDLLNQDRSPLCNTRPQHILDPSIQRHLTHFSLISHGFGSPAIVAALTAIQNF-----LTESLKHLDKMYP 261 (303)
Q Consensus 187 aakqi~~e~~dlL~q~rsPl~~~rP~~ile~~iq~~L~~FSliTHGFG~pai~aalt~~q~~-----L~e~lk~l~k~~~ 261 (303)
|-+.+++|+..+-..-+.|++|+.--=+.| +| ....|+|+++++|+ |+...+.|.+..+
T Consensus 9 aLkELIeeL~nitqnqkapLCNGSMVWsVn------------lt----a~~yCaalesL~NiS~Cs~Iq~tqRmL~~lc~ 72 (113)
T d1ik0a_ 9 ALRELIEELVNITQNQKAPLCNGSMVWSIN------------LT----AGMYCAALESLINVSGCSAIEKTQRMLSGFCP 72 (113)
T ss_dssp HHHHHHHHHHHHHHSCSSCSSSSCEEECCC------------CS----TTHHHHHHHHHTTCCSCGGGHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccCcccCCceEEEEe------------cC----cchHHHHHHHHhcccccHHHHHHHHHHHhhcc
Confidence 345677788777555678998743211111 11 34589999999875 7888899988888
Q ss_pred CCCCCCCCCcCCccCCC
Q psy8083 262 SGNSLSVSSSQGLQDTK 278 (303)
Q Consensus 262 ~~~~~~~~~~~~~~~~~ 278 (303)
...+.++.++.+..|++
T Consensus 73 ~k~sag~vss~~~rDTK 89 (113)
T d1ik0a_ 73 HKVSAGQFSSLHVRDTK 89 (113)
T ss_dssp CCCCTTCCSSTTSCCCE
T ss_pred CCCCcccccccccCccc
Confidence 66655555666666554
No 3
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.78 E-value=20 Score=28.55 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=53.8
Q ss_pred cccchHHHHHHHHHcC---CcCCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhcCChhhhHH
Q psy8083 104 SKNGGRLLREKLEKIG---LNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSRQHTSDPTESYR 180 (303)
Q Consensus 104 sKnGG~~LRe~Lek~G---l~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r~~~~~p~e~~~ 180 (303)
.|+=|-.||+.|.... -.||+..++. +|.--.-|++||.+++..- .+|+ +.....-..+.
T Consensus 47 VK~VG~~Lr~Ll~svD~~~~~lp~~~~~e---------Iema~klLskDm~eLi~~M----klAq----q~~~ttl~~ey 109 (142)
T d1k04a_ 47 VKEVGLALRTLLATVDETIPLLPASTHRE---------IEMAQKLLNSDLGELINKM----KLAQ----QYVMTSLQQEY 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHH---------HHHHHHHHHHHHHHHHHHH----HHHH----HTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHhHH---------HHHHHHHHHHHHHHHHHHH----HHHH----HhccchHHHHH
Confidence 4688899999886432 2367766554 5666677999999998732 4444 33233345567
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy8083 181 RKELIHATKQVTKELMDLLN 200 (303)
Q Consensus 181 r~~~l~aakqi~~e~~dlL~ 200 (303)
|+.|+.+|..+.-....+|.
T Consensus 110 rr~MLsaaH~LA~DaKnLlD 129 (142)
T d1k04a_ 110 KKQMLTAAHALAVDAKNLLD 129 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 88999998887755555554
No 4
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=39.16 E-value=18 Score=26.37 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=47.4
Q ss_pred eEecchhhhhcCCCcccchhhhhhhhhhcccccchHHHHHHHHHcCCcCCcccccccccccchhhcHHHHHH--HHHH-H
Q psy8083 74 KVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLEKIGLNLPAGRRKAANVTLLTSLVEGEAIH--LARD-F 150 (303)
Q Consensus 74 kVTV~EIrRRls~PE~LNaS~Lg~~LRRaKsKnGG~~LRe~Lek~Gl~LpagRRKaa~vT~~TsLvEgEAvh--LArD-f 150 (303)
.+|+.||..+++.+-.++.+.+-.+| +.|++.|+-- |++..+...+++++..|... ...+ .
T Consensus 21 ~~t~~ei~~~l~~~~~~~~sTv~t~L-------------~rL~~Kg~l~---r~~~gr~~~Y~~~~~~~~~~~~~~~~~~ 84 (120)
T d1okra_ 21 YASANNIIEEIQMQKDWSPKTIRTLI-------------TRLYKKGFID---RKKDNKIFQYYSLVEESDIKYKTSKNFI 84 (120)
T ss_dssp SEEHHHHHHHHHHHCCCCHHHHHHHH-------------HHHHHHTSEE---EEEETTEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcccCccHHhHHHHH-------------HHHHHCCCeE---EEecCCceEEeecCCHHHHHHHHHHHHH
Confidence 36778888777654445555555555 4688888852 33333334666665544332 2333 3
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCChhhhHH
Q psy8083 151 GYVCETEFPARQVAEYLSRQHTSDPTESYR 180 (303)
Q Consensus 151 ~~lce~eFP~k~lAe~l~r~~~~~p~e~~~ 180 (303)
+.++. ..+...++..+.. ..-++.++..
T Consensus 85 ~~~~~-~~~~~~~~~~~~~-~~ls~~el~~ 112 (120)
T d1okra_ 85 NKVYK-GGFNSLVLNFVEK-EDLSQDEIEE 112 (120)
T ss_dssp HHHST-TCHHHHHHHHHHH-SCCCHHHHHH
T ss_pred HHHHc-ccHHHHHHHHHHc-cCCCHHHHHH
Confidence 44443 4445555555543 3245566543
No 5
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=37.44 E-value=23 Score=27.20 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy8083 173 SDPTESYRRKELIHATKQVTKELMDLL 199 (303)
Q Consensus 173 ~~p~e~~~r~~~l~aakqi~~e~~dlL 199 (303)
.||.....|..++.+|+.++...+.+|
T Consensus 97 ~dP~s~~~R~~lV~aaR~lL~~vtrlL 123 (125)
T d1t01a1 97 ADPYSVPARDYLIDGSRGILSGTSDLL 123 (125)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999888876
No 6
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=36.52 E-value=65 Score=22.70 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHcCCcCCcccccccccccchhhcHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy8083 114 KLEKIGLNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAEYLSR 169 (303)
Q Consensus 114 ~Lek~Gl~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~lce~eFP~k~lAe~l~r 169 (303)
-.+++|+-.|..|.. .+--.++. +.+.-.+-...+-...||.++|.+++..
T Consensus 21 ~Ye~~GLl~p~~r~~-~gyR~Y~~----~~~~~l~~I~~lr~~G~sl~eI~~~l~~ 71 (109)
T d1r8da_ 21 HYDNIELLNPSALTD-AGYRLYSD----ADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp HHHHTTSSCCSEECT-TCCEEBCH----HHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred HHHHcCCcCCcccCC-cccccccH----HHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 467889977776643 22223433 4444445555666678999999998854
No 7
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.42 E-value=38 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy8083 173 SDPTESYRRKELIHATKQVTKELMDLLNQ 201 (303)
Q Consensus 173 ~~p~e~~~r~~~l~aakqi~~e~~dlL~q 201 (303)
.||.....|..++.+++.++...+.+|-.
T Consensus 32 ~dp~s~~~R~~lv~aaR~lLs~vt~lLll 60 (181)
T d1dova_ 32 DDPCSSVKRGNMVRAARALLSAVTRLLIL 60 (181)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999887776644
No 8
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.66 E-value=19 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.2
Q ss_pred HHHHHHcCCcCCcccccccccccchhhcHHHHHHHHHHHHH
Q psy8083 112 REKLEKIGLNLPAGRRKAANVTLLTSLVEGEAIHLARDFGY 152 (303)
Q Consensus 112 Re~Lek~Gl~LpagRRKaa~vT~~TsLvEgEAvhLArDf~~ 152 (303)
++.|.+.||++|.++. +-...||...|+++++
T Consensus 9 K~lL~~yGIpvp~~~~---------a~s~~ea~~~a~~iG~ 40 (238)
T d2nu7b2 9 KQLFARYGLPAPVGYA---------CTTPREAEEAASKIGA 40 (238)
T ss_dssp HHHHHHTTCCCCCEEE---------ESSHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCCCCceE---------ECCHHHHHHHHHHhCC
Confidence 4689999999999863 1136799999999864
No 9
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.33 E-value=37 Score=27.61 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCC
Q psy8083 183 ELIHATKQVTKELMDLLNQDRSPLCN 208 (303)
Q Consensus 183 ~~l~aakqi~~e~~dlL~q~rsPl~~ 208 (303)
..+.||+.+|..|.|+|+. ..|..+
T Consensus 120 ~Ll~AAr~L~~AfsdLLka-a~p~s~ 144 (167)
T d1sj7a1 120 PLLQAAKGLAGAVSELLRS-AQPASA 144 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccC
Confidence 5688999999999999999 455544
No 10
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=19.54 E-value=42 Score=22.79 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHcCCcCCcc
Q psy8083 106 NGGRLLREKLEKIGLNLPAG 125 (303)
Q Consensus 106 nGG~~LRe~Lek~Gl~Lpag 125 (303)
..=+.|.+.|++.|+.+...
T Consensus 19 ~tQ~eL~~~L~~~G~~vTQa 38 (63)
T d2p5ka1 19 ETQDELVDMLKQDGYKVTQA 38 (63)
T ss_dssp CSHHHHHHHHHHTTCCCCHH
T ss_pred CCHHHHHHHHHHcCCCeeHH
Confidence 44578999999999976543
Done!