RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8083
         (303 letters)



>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 880

 Score = 35.1 bits (80), Expect = 0.010
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 54/208 (25%)

Query: 93  SLLGGVLRRAKSKNGGRLLREKLEKIGLNLPAGRRKAAN-----VTLLTSLVEGEAIHLA 147
            +LG  ++ A     G  + E++E I     + R          +T L +L   E + +A
Sbjct: 14  KVLGETIKDA----LGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVA 69

Query: 148 RDFGY------VCET----------------------------EFPARQVAEYLSRQH-- 171
           R F          E                             E     + + +      
Sbjct: 70  RAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLE 129

Query: 172 ---TSDPTESYRRKELIHATKQVTKELMDLLNQDRSPLCNTRPQHILDPSIQRHLT-HFS 227
              T+ PTE  RR  LIH   +V   L  L N+D +        + L   +++ +   + 
Sbjct: 130 LVLTAHPTEITRR-TLIHKMVEVNACLKQLDNKDIAD----YEHNQLMRRLRQLIAQSWH 184

Query: 228 LISHGFGSPAIVAALTAIQNFLTESLKH 255
                   P+ V         +  SL  
Sbjct: 185 TDEIRKLRPSPVDEAKWGFAVVENSLWQ 212


>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 936

 Score = 30.9 bits (69), Expect = 0.20
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 155 ETEFPARQVAEYLSRQH-----TSDPTESYRRKELIHATKQVTKELMDLLNQDRSPLCNT 209
           E      +V E L  Q      T+ PT+S RR  L+    ++   L  L  +D +     
Sbjct: 119 EVGKSPEEVFEALKNQTVDLVFTAHPTQSARRS-LLQKNARIRNCLTQLNAKDITD---- 173

Query: 210 RPQHILDPSIQRHLT 224
             +  LD ++QR + 
Sbjct: 174 DDKQELDEALQREIQ 188


>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 126

 Score = 28.1 bits (62), Expect = 0.67
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 139 VEGEAIHLARDFGYVCETEFPA----RQVAEYLSRQHTSDPTESYRRKELIHATKQVTKE 194
            E    H+   +       + A    R+  +  +   T+       R  L+ + ++    
Sbjct: 54  AEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLAT 113

Query: 195 LMDLL 199
            +DLL
Sbjct: 114 GLDLL 118


>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida
           albicans) [TaxId: 5476]}
          Length = 174

 Score = 27.2 bits (60), Expect = 2.1
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 244 AIQNFLTESLKHLDKMYPSGNSLSVSSSQGLQDTKPKDLGNDLKNIW 290
            ++ FL   L  LD +Y    S    + +        +L      I 
Sbjct: 6   QLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIV 52


>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
           FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 304

 Score = 27.2 bits (59), Expect = 2.6
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 219 IQRHLTHFSLISHGFGSPAIVAALTAIQNFLTE 251
           I++ L +F+ I H  G+         IQ+   E
Sbjct: 14  IKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKE 46


>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 136

 Score = 26.4 bits (58), Expect = 3.1
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 160 ARQVAE------YLSRQHTSDPTESYRRKELIHATKQVTKELMDLLN 200
            +++          +      P++ Y +KELI   ++V++++  +L 
Sbjct: 83  VQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLA 129


>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 25.8 bits (56), Expect = 3.8
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 173 SDPTESYRRKELIHATKQVTKELMDLL 199
                +  R  L  A +QV    M LL
Sbjct: 90  QTEELATARLALYGAARQVLYNGMRLL 116


>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein
           MecI {Staphylococcus aureus [TaxId: 1280]}
          Length = 120

 Score = 25.3 bits (55), Expect = 5.3
 Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 74  KVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLEKIGLNLPA----GRRKA 129
             +   +   +   +  +   +  ++ R   K  G + R+K  KI            +  
Sbjct: 21  YASANNIIEEIQMQKDWSPKTIRTLITRLYKK--GFIDRKKDNKIFQYYSLVEESDIKYK 78

Query: 130 ANVTLLTSLVEGEAIHLARDFGYVCETEFPARQVAE 165
            +   +  + +G    L  +F  V + +    ++ E
Sbjct: 79  TSKNFINKVYKGGFNSLVLNF--VEKEDLSQDEIEE 112


>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus
           [TaxId: 11191]}
          Length = 53

 Score = 23.5 bits (50), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 182 KELIHA-TKQVTKELMDLLNQDRSPLCN 208
           K L    T Q  K +M+L+ +D   L N
Sbjct: 26  KSLSKCKTDQEVKAVMELVEEDIESLTN 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,037,870
Number of extensions: 45422
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 16
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)