BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8087
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/400 (51%), Positives = 264/400 (66%), Gaps = 51/400 (12%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
K LMF LRDG+GF+Q +L D LCQT AL ++TE +V+ G I++VPE P+
Sbjct: 28 KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEA-----PN 82
Query: 147 SYAIV---W--LGDLKQGGYP----PEVSLAN---------------------------- 169
+ ++ W +G+ GG E S+
Sbjct: 83 GHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAM 142
Query: 170 -------GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYC 222
G +V PPTLVQTQVEGGSTLF+L++FGE ++LTQSSQLYLETC+P LGDV+C
Sbjct: 143 REHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFC 202
Query: 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH--GDLVR 280
IAQSYRAE SRTRRHLAEY HVEAEC F+T DDL++K+E+L+CDTVDR++A L+
Sbjct: 203 IAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLE 262
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
+NP F+PP RPFLRM Y DAI++L++H + + +GEDI E ER MTD IN+PI
Sbjct: 263 HINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPI 322
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L RFP++IK+FYM + ++ LTESVD+L P VGE++GGSMRIW +EL +K ID
Sbjct: 323 LLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEID 382
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P PYYWY DQR YG+ PHGGYGLGLER +CWL N H+RD
Sbjct: 383 PKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRD 422
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%)
Query: 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS 561
+KI+D K+R++RV I GW+HR+RRQGK LMF LRDG+GF+Q +L D LCQT AL ++
Sbjct: 1 VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVN 60
Query: 562 TESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRH 621
TE +V+ G I++VPEGK AP GHEL D+W+++G AP GG D +LNEEA D LDNRH
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 622 IMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
++IRGEN + +L +R+ +A+R HF + Y EV
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEV 154
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/400 (51%), Positives = 264/400 (66%), Gaps = 51/400 (12%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
K LMF LRDG+GF+Q +L D LCQT AL ++TE +V+ G I++VPE P+
Sbjct: 30 KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEA-----PN 84
Query: 147 SYAIV---W--LGDLKQGGYP----PEVSLAN---------------------------- 169
+ ++ W +G+ GG E S+
Sbjct: 85 GHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAM 144
Query: 170 -------GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYC 222
G +V PPTLVQTQVEGGSTLF+L++FGE ++LTQSSQLYLETC+P LGDV+C
Sbjct: 145 REHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFC 204
Query: 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH--GDLVR 280
IAQSYRAE SRTRRHLAEY HVEAEC F+T DDL++K+E+L+CDTVDR++A L+
Sbjct: 205 IAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLE 264
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
+NP F+PP RPFLRM Y DAI++L++H + + +GEDI E ER MTD IN+PI
Sbjct: 265 HINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPI 324
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L RFP++IK+FYM + ++ LTESVD+L P VGE++GGSMRIW +EL +K ID
Sbjct: 325 LLNRFPSEIKAFYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEID 384
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P PYYWY DQR YG+ PHGGYGLGLER +CWL N H+RD
Sbjct: 385 PKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRD 424
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%)
Query: 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS 561
+KI+D K+R++RV I GW+HR+RRQGK LMF LRDG+GF+Q +L D LCQT AL ++
Sbjct: 3 VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVN 62
Query: 562 TESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRH 621
TE +V+ G I++VPEGK AP GHEL D+W+++G AP GG D +LNEEA D LDNRH
Sbjct: 63 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 122
Query: 622 IMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
++IRGEN + +L +R+ +A+R HF + Y EV
Sbjct: 123 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEV 156
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/404 (48%), Positives = 251/404 (62%), Gaps = 59/404 (14%)
Query: 87 KGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHP 145
K L+FV LRDGSG+ QCV+ LC+ E LL+ E S++ GR+ +N HP
Sbjct: 47 KTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKN------HP 100
Query: 146 SSYAIVW-----LGDLKQGGYPPEVSLANGIAK--------------------------- 173
A + + + K G P + L N I K
Sbjct: 101 PEIADILNLEMQVTEWKVIGESP-IDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLR 159
Query: 174 ------------------VTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP 215
+ PPT+V+TQ EGGSTLF L +F EPAYLTQSSQLYLE+ +
Sbjct: 160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA 219
Query: 216 ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH 275
+LG +C+ SYRAE SRT RHLAEY H+EAE F++F+DLL+ LEDL+C +D VMA H
Sbjct: 220 SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVH 279
Query: 276 GDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ 335
GD +R+MNP+ + P RPF RM YADAI+Y H I D +E+GEDI E PER+MTD+
Sbjct: 280 GDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKP-FEYGEDISEKPERQMTDE 338
Query: 336 INRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYK 395
I PI + FP+ +K+FYMSK P +P LTESVD+L P VGE++GGSMRIW+ +EL+ YK
Sbjct: 339 IGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYK 398
Query: 396 REGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
G++P PYYWYT QRKYGS PHGGYGLG+ER++ WLL + H+R
Sbjct: 399 ANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIR 442
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 503 KIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLS 561
I+D K VT GW + +R+ K L+FV LRDGSG+ QCV+ LC+ E LL+
Sbjct: 21 NIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLT 80
Query: 562 TESSVQFRGRIEKVPEGKSAPG------GHELKVDYWEVVGLAPAGGADAILNEEALPDV 615
E S++ GR+ GK+ P E++V W+V+G +P + I + ++P
Sbjct: 81 RECSLEITGRLNAYA-GKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQ- 138
Query: 616 QLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
++ NRHI+IR E+T +VL +RS + R ++ D ++TE+
Sbjct: 139 KMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEI 178
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 203/396 (51%), Gaps = 56/396 (14%)
Query: 90 MFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRG--------------RIEK 132
+F+ +RD +G +Q V+A + E A L ESSV G +EK
Sbjct: 35 IFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEK 94
Query: 133 V-------------------PEENMKVQLIH---PSSYAIVWLGDLKQGGYPPEVSLANG 170
+ PE + + +H P + AI+ + + E L +G
Sbjct: 95 LEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMA-AREWLLKDG 153
Query: 171 IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAE 230
+V PP LV VEGG+TLF L +F + AYL+QS+QLYLE + L V+ + S+RAE
Sbjct: 154 WHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAE 213
Query: 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMN------P 284
SRTRRHL E+ H+E E A++ D++ E+L+ V R + +
Sbjct: 214 KSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK 273
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
N EP PF R++Y +AI+ L+ E+G+D+ ER +T++ +RP +
Sbjct: 274 NTEP---PFPRISYDEAIDILQSK------GVNVEWGDDLGADEERVLTEEFDRPFFVYG 324
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPN-VGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
+P IK+FYM + P +P + D+L P GE+IGGS R D ++LL EG+DP
Sbjct: 325 YPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKD 384
Query: 404 YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
Y WY D R+YGS PH G+GLG+ER++ W+L H+R
Sbjct: 385 YEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIR 420
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFR 569
K+V + GWV+ R GK + F+ +RD +G +Q V+A + E A L ESSV
Sbjct: 17 KKVRLAGWVYTNMRVGKKI-FLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVE 75
Query: 570 GRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENT 629
G ++ + APGG E+ V+ EV+ A + E+A P++ LD RH+ IR
Sbjct: 76 GIVKA---DERAPGGAEVHVEKLEVIQ-AVSEFPIPENPEQASPELLLDYRHLHIRTPKA 131
Query: 630 SRVLLMRSVLLQALRAHFADRNYTEV 655
S ++ ++ L+ A R + EV
Sbjct: 132 SAIMKVKETLIMAAREWLLKDGWHEV 157
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 150/282 (53%), Gaps = 16/282 (5%)
Query: 164 EVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCI 223
E G ++ P ++ + EGG+ LF + +FG+ A+L QS QLY E + V+ +
Sbjct: 146 ETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEV 205
Query: 224 AQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283
A ++RAE S T HLAE+ ++ E AF ++D++ LE ++ + V + + ++ +
Sbjct: 206 APAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKIL- 264
Query: 284 PNFEPPAR--PFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDI--PEMPERKMTDQINRP 339
N+EPP P R+ Y +AIE LR +FG+DI PE+ R + +++
Sbjct: 265 -NYEPPEVKIPIKRLKYTEAIEILRSK------GYNIKFGDDIGTPEL--RILNEELKED 315
Query: 340 I-MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
+ + +P+D + FY ENP L+ES D+++ + E++ GS R E L K++G
Sbjct: 316 LYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKG 374
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ P + ++ YG PH G+G+GL R++ L V++
Sbjct: 375 LKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKE 416
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 16/275 (5%)
Query: 171 IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAE 230
++ P +V+ EGGS LF +++F + AYL QS QLY + + VY +A +R E
Sbjct: 144 FTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRME 203
Query: 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLED-LICDTVDRVMATHGDLVRQMNPNFEPP 289
T RHL EY ++ E F+ ++ L +LE+ L+ + ++ + T GD +R + +
Sbjct: 204 EHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSF 263
Query: 290 ARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP-----IMLCR 344
+ R+ +A+A L+ + Y G+D+ E ER + + + + R
Sbjct: 264 PQDIPRLTHAEAKRILK-------EELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTR 316
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
+P ++ FY PE T S D+LF + E+ G RI EELL K +G+DP +
Sbjct: 317 YPRSVRPFYT--YPEEDGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAF 373
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
+ Y + KYG PHGG+ +G ER+ LL +VR
Sbjct: 374 HGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVR 408
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 500 VRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
+R+ ++D + + + V + G++H R G+ + F+ LRD SG +Q V + L
Sbjct: 1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQVVTGGLK-------L 52
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEE--ALPDVQL 617
ES+++ RG V E APGG E++ EV+ A I EE A PD L
Sbjct: 53 PLPESALRVRG---LVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLL 109
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ R++ +RGE L +++ L++ R + +++TE+
Sbjct: 110 EYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEI 147
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 146/279 (52%), Gaps = 14/279 (5%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
NG ++ P ++ T EGG+ LF + +F E A+L QS QLY + + + L VY IA +
Sbjct: 154 NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIF 213
Query: 228 RAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF 286
RAE T RHL E +++E AF+ ++++ LE L+ ++ V + + +N
Sbjct: 214 RAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 273
Query: 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER----KMTDQINRPI-M 341
E P PF R++Y A+E L E +GEDI ER M + N P+
Sbjct: 274 EEPKLPFPRVSYDKALEILGDL------GKEIPWGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
L ++P++ K FY+ K P + + D+ + V E+ G R + L+ K +G++P
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNP 386
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ +Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 387 ESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 425
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 146/279 (52%), Gaps = 14/279 (5%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
NG ++ P ++ T EGG+ LF + +F E A+L +S QLY E + + L VY IA +
Sbjct: 154 NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIF 213
Query: 228 RAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF 286
RAE T RHL E +++E AF+ ++++ LE L+ ++ V + + +N
Sbjct: 214 RAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 273
Query: 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER----KMTDQINRPI-M 341
E P PF R++Y A+E L E +GEDI ER M + N P+
Sbjct: 274 EEPKLPFPRVSYDKALEILGDL------GKEIPWGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
L ++P++ K FY+ K P + + D+ + V E+ G R + L+ K +G++P
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNP 386
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ +Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 387 ESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 425
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 167/339 (49%), Gaps = 17/339 (5%)
Query: 111 QTEHALLLSTESSVQFRGRIEKVPE-ENMKVQLIHPSSYAIVWLGDLKQGGYPPEVSLAN 169
+ E+A LL ++S Q ++ + +N + L ++ AI + G + E +
Sbjct: 203 KDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFR-EFLTSQ 261
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGD---VYCIAQS 226
++ P L+ EGGS +F + +F AYL QS QLY + + +GD V+ +
Sbjct: 262 KFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAI--MGDFRKVFEVGPV 319
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICDTVDRVMATHGDLVRQM 282
+RAENS TRRHL E+ ++ E + D+++KL I D + + ++R+
Sbjct: 320 FRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQ 379
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIP--EMPERKMTDQINRPI 340
P + RPFLR+ Y +AIE LR D ++ +++ E+ + K
Sbjct: 380 YPFEDLIYRPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGELIKAKYNTDF---Y 436
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L +FPA I+ FY ++P + S DV F E+ G+ RI DPE L+ +G+D
Sbjct: 437 ILDKFPAAIRPFYTMPDIDDPNYSNSYDV-FVRGQEITSGAQRIHDPEFLMKRCIEKGVD 495
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
PA Y + ++GS PH G G+GLER+ L ++R
Sbjct: 496 PATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIR 534
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 16/281 (5%)
Query: 171 IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYRA 229
+V P L+ EGGS++F + +F AYL QS Q + + A VY I +RA
Sbjct: 197 FTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256
Query: 230 ENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDL---ICDTVDRVMATHGDLVRQMNPN 285
ENS T RH+ E+T ++ E AF + ++LD L +L I + + A +LVR+ P
Sbjct: 257 ENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPV 316
Query: 286 FE---PPARPFLRMNYADAIEYLRK--HEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
E P +R+ Y + IE LR EI ++ E + + ++ K
Sbjct: 317 EEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDF---Y 373
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L +FP +I+ FY P NP + S D F E++ G+ RI D L K G+
Sbjct: 374 ILDKFPLEIRPFYTMPDPANPKYSNSYD-FFMRGEEILSGAQRIHDHALLQERMKAHGLS 432
Query: 401 PAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
P Y D YG PH G G+GLERV+ + L+ ++R
Sbjct: 433 PEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR 473
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQ-CVLADILCQTEHALL----- 559
D K DK V VH R+QG L F+TLR + IQ V A+ ++
Sbjct: 30 DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGS 89
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEA-------- 611
L+ ES V RG ++KV E + L++ ++ ++ A IL E+A
Sbjct: 90 LNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAE 149
Query: 612 ---LP----DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
LP D +LD R I +R + +++ + + R + A + +TEV+
Sbjct: 150 AAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVH 201
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 16/281 (5%)
Query: 171 IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYRA 229
+V P L+ EGGS++F + +F AYL QS Q + + A VY I +RA
Sbjct: 200 FTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 259
Query: 230 ENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDL---ICDTVDRVMATHGDLVRQMNPN 285
ENS T RH+ E+T ++ E AF + ++LD L +L I + + A +LVR+ P
Sbjct: 260 ENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPV 319
Query: 286 FE---PPARPFLRMNYADAIEYLRK--HEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
E P +R+ Y + IE LR EI ++ E + + ++ K
Sbjct: 320 EEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDF---Y 376
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L +FP +I+ FY P NP + S D F E++ G+ RI D L K G+
Sbjct: 377 ILDKFPLEIRPFYTMPDPANPKYSNSYD-FFMRGEEILSGAQRIHDHALLQERMKAHGLS 435
Query: 401 PAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
P Y D YG PH G G+GLERV+ + L+ ++R
Sbjct: 436 PEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR 476
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQ-CVLADILCQTEHALL----- 559
D K DK V VH R+QG L F+TLR + IQ V A+ ++
Sbjct: 33 DEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGS 92
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEA-------- 611
L+ ES V RG ++KV E + L++ ++ ++ A IL E+A
Sbjct: 93 LNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAE 152
Query: 612 ---LP----DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
LP D +LD R I +R + +++ + + R + A + +TEV+
Sbjct: 153 AAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVH 204
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 201 YLTQSSQLYLETCL-PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
Y+ + +L+L+ + L VY I + +R E TR H E+T +E A+ F D++
Sbjct: 225 YMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTR-HNPEFTMLELYEAYADFRDIMKL 283
Query: 260 LEDLICDTVDRVMAT----HGDLVRQMNPNFEPPARPFLRMNYADAI-EYL--------- 305
E+LI V+ T +G+ + + P + R++ DAI EY+
Sbjct: 284 TENLIAHIATEVLGTTKIQYGEHLVDLTPEWR-------RLHMVDAIKEYVGVDFWRQMS 336
Query: 306 --RKHEIRKPDNTE----YEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPE 359
E+ K E FG + E E+K+ D++ +P + P +I K P+
Sbjct: 337 DEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPL-AKKNPD 395
Query: 360 NPALTESVDVLFPNVGEVIGGSMRIWDP-------EELLAGYKREGIDPAPYYW--YTDQ 410
+P T+ + LF E + DP EE L + +G D A + +
Sbjct: 396 DPRFTDRFE-LFIVGREHANAFTELNDPIDQRQRFEEQLKE-REQGNDEAHEMDEDFLEA 453
Query: 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+YG P GG G+G++R++ L N +RD
Sbjct: 454 LEYGMPPTGGLGIGVDRLVMLLTNSPSIRD 483
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 40/251 (15%)
Query: 193 LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTR--RHLAEYTHVEAECA 249
++ +G LT S L+ + + L ++ ++ + R E+ R RH E+T ++ E
Sbjct: 63 VDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIE 122
Query: 250 FLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHE 309
D++ +E+LI + G R+ P AR F +Y D +E
Sbjct: 123 GAKMKDVMRLIEELIYGLFRKAEEWTG---REF-----PRARHFKVYDYKDILE------ 168
Query: 310 IRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDV 369
EFG D K + ++ P + P + FY E + ++ D+
Sbjct: 169 ---------EFGSD------EKASMEMEEPFWIVNIP---REFYDR---EENGVWKNYDL 207
Query: 370 LFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHGGYGLGLER 427
+ P GEV G R W+ E+++A + G+ + Y + + G P G G+G+ER
Sbjct: 208 ILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAGAGIGVER 267
Query: 428 VLCWLLNQYHV 438
++ +++ H+
Sbjct: 268 LVRFIVGAKHI 278
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 40/270 (14%)
Query: 201 YLTQSSQLYLE-TCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
YL + +LYL+ + V+ I +++R E R H E+T +E A+ + DL++
Sbjct: 234 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVR-HNPEFTMMELYMAYADYKDLIEL 292
Query: 260 LEDLI----CDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLR-KHEIRKPD 314
E L D + + T+GD+ +PF ++ +AI+ R + ++ D
Sbjct: 293 TESLFRTLAQDILGKTEVTYGDVTLDF-------GKPFEKLTMREAIKKYRPETDMADLD 345
Query: 315 NTE----------------YEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCP 358
N + + G + E+ E + +P + +PA++ S +
Sbjct: 346 NFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEV-SPLARRND 404
Query: 359 ENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGY------KREGIDPAPYYW--YTDQ 410
NP +T+ + F E+ G + D E+ + K G D A +Y Y
Sbjct: 405 VNPEITDRFE-FFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTA 463
Query: 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++G P G G+G++R++ N + +RD
Sbjct: 464 LEHGLPPTAGLGIGIDRMVMLFTNSHTIRD 493
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 193 LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTR--RHLAEYTHVEAECA 249
+ +G LT S L+ + + L ++ ++ + R E+ + RH E+T ++ E
Sbjct: 63 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 122
Query: 250 FLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHE 309
+D++ +E L+ + G R+ P + F Y++ +E
Sbjct: 123 RAKMEDIMRLIERLVYGLFRKAEEWTG---REF-----PKTKRFEVFEYSEVLE------ 168
Query: 310 IRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDV 369
EFG D K + ++ P + P + FY E + D+
Sbjct: 169 ---------EFGSD------EKASQEMEEPFWIINIP---REFYDR---EVDGFWRNYDL 207
Query: 370 LFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHGGYGLGLER 427
+ P GEV G R W+ E+++A ++ G++ + Y + K G P G G+G+ER
Sbjct: 208 ILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVER 267
Query: 428 VLCWLLNQYHV 438
++ +++ H+
Sbjct: 268 LVRFIVGAKHI 278
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 38/304 (12%)
Query: 167 LANGIAKVTPPTLVQTQVEGGST----LFSLNFFGEPAYLTQSSQLYLET-CLPALGDVY 221
+A G +V P + + GG++ + N YL + +LYL+ + V+
Sbjct: 198 VARGFMEVETPMM--QVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVF 255
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ 281
I +++R E R H E+T +E A+ + DL++ E L V+ T +
Sbjct: 256 EINRNFRNEGISVR-HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGE 314
Query: 282 MNPNFEPPARPFLRMNYADAIEYLR-KHEIRKPDNTE----------------YEFGEDI 324
+F +PF ++ +AI+ R + ++ DN + + G +
Sbjct: 315 HVFDF---GKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIV 371
Query: 325 PEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRI 384
E+ + + +P + +PA++ + NP +T+ + F E+ G +
Sbjct: 372 TEIFDEVAEAHLIQPTFITEYPAEVSPL-ARRNDVNPEITDRFE-FFIGGREIGNGFSEL 429
Query: 385 WDPEELLAGYKRE------GIDPAPYYW--YTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436
D E+ ++ + G D A +Y Y +YG P G G+G++R++ N +
Sbjct: 430 NDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSH 489
Query: 437 HVRD 440
+RD
Sbjct: 490 TIRD 493
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA--- 402
P D+ + + PEN A+ + D++ N EV GGS+RI + + + GI+
Sbjct: 454 PKDMTAAELKAAPEN-AVANAYDMVI-NGYEVGGGSVRIHNGDMQQTVFGILGINEEEQR 511
Query: 403 -PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + D KYG+ PH G GL+R+ L ++RD
Sbjct: 512 EKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRD 550
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQF---- 568
++VT+ GWV+R RR L+F+ +RD G +Q AL L++E +F
Sbjct: 16 QQVTLCGWVNR-RRDLGSLIFIDMRDREGIVQVFFD---PDRADALKLASELRNEFCIQV 71
Query: 569 ----RGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMI 624
R R EK A G E+ ++ A D+ N + +L R++ +
Sbjct: 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDS--NHVNTEEARLKYRYLDL 129
Query: 625 RGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R ++ L R+ + +R D + ++
Sbjct: 130 RRPEMAQRLKTRAKITSLVRRFMDDHGFLDI 160
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLPALGD-VYCIAQ 225
+G + P L + EG S G+ L QS QL+ + + + D Y I +
Sbjct: 155 HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVK 214
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLI 264
+R E+ R R E+T ++ E +F+T + + +E L+
Sbjct: 215 CFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALV 252
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA--- 402
P D+ + + PEN A+ + D++ N EV GGS+RI + + + GI+
Sbjct: 454 PKDMTAAELKAAPEN-AVANAYDMVI-NGYEVGGGSVRIHNGDMQQTVFGILGINEEEQR 511
Query: 403 -PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + D KYG+ PH G GL+R+ L ++RD
Sbjct: 512 EKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRD 550
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQF---- 568
++VT+ GWV+R RR L+F+ +RD G +Q AL L++E +F
Sbjct: 16 QQVTLCGWVNR-RRDLGSLIFIDMRDREGIVQVFFD---PDRADALKLASELRNEFCIQV 71
Query: 569 ----RGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMI 624
R R EK A G E+ ++ A D+ N + +L R++ +
Sbjct: 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDS--NHVNTEEARLKYRYLDL 129
Query: 625 RGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R ++ L R+ + +R D + ++
Sbjct: 130 RRPEMAQRLKTRAKITSLVRRFMDDHGFLDI 160
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLPALGD-VYCIAQ 225
+G + P L + EG S G+ L QS QL+ + + + D Y I +
Sbjct: 155 HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVK 214
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLI 264
+R E+ R R E+T ++ E +F+T + + +E L+
Sbjct: 215 CFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALV 252
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 36/270 (13%)
Query: 201 YLTQSSQLYLETCL-PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
+L + +LYL+ + V+ I +++R E + RH E+T +E A+ + L+D
Sbjct: 255 FLRIAPELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYAAYTDYRWLMDF 313
Query: 260 LEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIE---------------Y 304
E LI + T + + A+PF R+ AI+ +
Sbjct: 314 TERLIRQAAVDALGTATIQYQGRELDL---AQPFHRLTITQAIQKYAPSYTDGQLSDDAF 370
Query: 305 LRKH------EIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCP 358
LR ++ +P G + E Q+ P + +P ++ +
Sbjct: 371 LRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPL-ARESD 429
Query: 359 ENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAPYYW--YTDQ 410
+TE + LF E+ G + DPE+ A +K++ G + A ++ Y
Sbjct: 430 TVAGITERFE-LFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRA 488
Query: 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+YG P GG G+G++R++ L + +RD
Sbjct: 489 LEYGMPPTGGCGIGIDRLVMLLTDSPTIRD 518
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPE---ELLAGYKREGIDPA 402
P+DI Y A ++ D++ N E+ GGS+RI + E +LA +E +
Sbjct: 470 PSDIHLLYTEP---KKARSQHYDLVL-NGNEIGGGSIRIHNAELQRYILATLLKEDVKML 525
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ YG+ PHGG LGL+R++C + +RD
Sbjct: 526 SHLL--QALDYGAPPHGGIALGLDRLICLVTGSPSIRD 561
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 373 NVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERV 428
N EV GGS+RI DP ++ GI + ++ + +YG+ PHGG GL+R+
Sbjct: 473 NGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRL 532
Query: 429 LCWLLNQYHVRD 440
L + +R+
Sbjct: 533 LALMTGSPSIRE 544
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQ 567
E + + V + GWV+R RR GL+F+ LRD G +Q V A + E V+
Sbjct: 12 ETHVGEEVVLEGWVNR-RRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVR 70
Query: 568 FRG--RIEKVPEGKSAPGGHELKVDYWEVVGLA 598
+G R+ P + A G E+++ EV+ A
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 54/283 (19%)
Query: 201 YLTQSSQLYLET-CLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
Y+ + +LY + + + VY I + +R E H E+T E A+ + DL++
Sbjct: 227 YMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLT-HNPEFTTCEFYMAYADYHDLMEI 285
Query: 260 LEDLICDTVDRVMATH-------GDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK 312
E ++ V + ++ G + + +F PP F R+N + +E + ++
Sbjct: 286 TEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPP---FRRINMVEELE--KALGMKL 340
Query: 313 PDNTEYEFGE------DI---------PEMPERKMTDQIN---------RPIMLCRFP-- 346
P+ +E E DI P ++ D++ P +C P
Sbjct: 341 PETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQI 400
Query: 347 -ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPE------ELLAGYKREGI 399
+ + ++ SK LTE + LF E+ + DP E A K G
Sbjct: 401 MSPLAKWHRSK----EGLTERFE-LFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGD 455
Query: 400 DPAPYY--WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
D A + + +YG P G+G+G++RV +L + ++++
Sbjct: 456 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKE 498
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 54/283 (19%)
Query: 201 YLTQSSQLYLET-CLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
Y+ + +LY + + + VY I + +R E H E+T E A+ + DL++
Sbjct: 227 YMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLT-HNPEFTTCEFYMAYADYHDLMEI 285
Query: 260 LEDLICDTVDRVMATH-------GDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK 312
E ++ V + ++ G + + +F PP F R+N + +E + ++
Sbjct: 286 TEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPP---FRRINMVEELE--KALGMKL 340
Query: 313 PDNTEYEFGE------DI---------PEMPERKMTDQIN---------RPIMLCRFP-- 346
P+ +E E DI P ++ D++ P +C P
Sbjct: 341 PETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQI 400
Query: 347 -ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPE------ELLAGYKREGI 399
+ + ++ SK LTE + LF E+ + DP E A K G
Sbjct: 401 MSPLAKWHRSK----EGLTERFE-LFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGD 455
Query: 400 DPAPYY--WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
D A + + +YG P G+G+G++RV +L + ++++
Sbjct: 456 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKE 498
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 197 GEPAYLTQSSQL-----YLETCLPALGDVYCI-AQSYRAENSRTRRHLAEYTHVEAECAF 250
G P +T S L E P LG Y + +Y+ R AE+ H +
Sbjct: 61 GGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLN 120
Query: 251 LTFDDLLDKLEDLIC---DTVDRVMATHGDLVRQMNPNFEPPA 290
F L D +ED + + + V +HGD+V ++ P FE A
Sbjct: 121 PAF--LFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATA 161
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 151 VWLGDLKQGGYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN----FFGEPAYLTQSS 206
VW+ K P V+L G ++PP+ V+ ++ + + ++N FG PA + S
Sbjct: 12 VWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALS 71
Query: 207 QLY 209
LY
Sbjct: 72 CLY 74
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 151 VWLGDLKQGGYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN----FFGEPAYLTQSS 206
VW+ K P V+L G ++PP+ V+ ++ + + ++N FG PA + S
Sbjct: 12 VWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALS 71
Query: 207 QLY 209
LY
Sbjct: 72 CLY 74
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 254 DDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK- 312
+++LD +IC+ V +MA G M + A FL M Y D ++ L+ + K
Sbjct: 487 EEMLDDAGKMICEEVSLLMAAPGG----MEEYRKTLAISFLFMFYLDVLKQLKTRDPHKY 542
Query: 313 PDNTE--YEFGEDIP-EMP-----------ERKMTDQINRPIM 341
PD ++ ED P MP ++ + D I RPIM
Sbjct: 543 PDISQKLLHILEDFPLTMPYGMQSFQDVDFQQPLQDPIGRPIM 585
>pdb|3U0J|B Chain B, Crystal Structure Of Adp-Ribosyltransferase Hopu1 Of
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3U0J|A Chain A, Crystal Structure Of Adp-Ribosyltransferase Hopu1 Of
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 270
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 238 LAEYTHVEAECAFLTFDDLLDKLED 262
A HV+A+C L+ DDL+DK D
Sbjct: 50 FAARLHVDAQCFGLSIDDLMDKFSD 74
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 526 RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585
R + ++ V + G G + ++ +T+H L L ++F I+K+ EG + GG
Sbjct: 420 RTYEAVIRVNSQSGKGGVAYIM-----KTDHGLSLPRRLQIEFSQVIQKIAEGTAGEGGE 474
Query: 586 ELKVDYWEVVG---LAP 599
+ W+ LAP
Sbjct: 475 VSPKEMWDAFAEEYLAP 491
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 526 RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585
R + ++ V + G G + ++ +T+H L L ++F I+K+ EG + GG
Sbjct: 422 RTYEAVIRVNSQSGKGGVAYIM-----KTDHGLSLPRRLQIEFSQVIQKIAEGTAGEGGE 476
Query: 586 ELKVDYWEVVG---LAP 599
+ W+ LAP
Sbjct: 477 VSPKEMWDAFAEEYLAP 493
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,827,619
Number of Sequences: 62578
Number of extensions: 772746
Number of successful extensions: 1550
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 53
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)