Query psy8087
Match_columns 658
No_of_seqs 545 out of 2973
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:07:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0017 AsnS Aspartyl/asparagi 100.0 1.8E-95 4E-100 777.3 29.5 381 55-448 5-430 (435)
2 COG1190 LysU Lysyl-tRNA synthe 100.0 2.2E-93 4.7E-98 763.5 17.3 392 45-452 29-500 (502)
3 TIGR00458 aspS_arch aspartyl-t 100.0 7.1E-91 1.5E-95 763.3 29.5 372 68-447 10-422 (428)
4 TIGR00499 lysS_bact lysyl-tRNA 100.0 4.9E-91 1.1E-95 774.4 28.1 393 46-452 22-494 (496)
5 PRK05159 aspC aspartyl-tRNA sy 100.0 2.1E-90 4.5E-95 762.7 29.2 383 54-448 4-432 (437)
6 PRK12445 lysyl-tRNA synthetase 100.0 2.6E-89 5.5E-94 760.4 28.4 393 47-452 35-503 (505)
7 PLN02502 lysyl-tRNA synthetase 100.0 3.3E-89 7.1E-94 762.8 28.0 395 45-452 77-551 (553)
8 TIGR00457 asnS asparaginyl-tRN 100.0 6.3E-89 1.4E-93 751.5 28.2 378 67-448 13-448 (453)
9 PRK00484 lysS lysyl-tRNA synth 100.0 1.2E-88 2.5E-93 755.3 29.5 390 46-445 23-485 (491)
10 PTZ00425 asparagine-tRNA ligas 100.0 3.4E-88 7.4E-93 752.0 30.0 378 67-448 78-581 (586)
11 PLN02221 asparaginyl-tRNA synt 100.0 5.2E-88 1.1E-92 752.4 26.9 388 56-448 34-567 (572)
12 PLN02603 asparaginyl-tRNA synt 100.0 8.5E-88 1.8E-92 750.9 27.8 393 51-448 86-560 (565)
13 PLN02532 asparagine-tRNA synth 100.0 3.7E-87 8E-92 746.7 31.7 360 84-447 130-627 (633)
14 PRK03932 asnC asparaginyl-tRNA 100.0 2.5E-87 5.3E-92 739.6 29.8 377 67-447 13-444 (450)
15 PTZ00385 lysyl-tRNA synthetase 100.0 7.4E-87 1.6E-91 747.0 31.1 395 47-454 79-566 (659)
16 PTZ00401 aspartyl-tRNA synthet 100.0 5.9E-87 1.3E-91 744.3 28.1 370 69-448 77-545 (550)
17 PTZ00417 lysine-tRNA ligase; P 100.0 8.2E-87 1.8E-91 745.6 29.3 395 45-452 101-583 (585)
18 PLN02850 aspartate-tRNA ligase 100.0 8.2E-87 1.8E-91 743.2 26.8 370 68-448 79-525 (530)
19 KOG1885|consensus 100.0 4E-88 8.7E-93 705.7 8.9 403 44-455 72-559 (560)
20 PRK02983 lysS lysyl-tRNA synth 100.0 9.3E-85 2E-89 776.6 28.3 388 45-452 629-1092(1094)
21 KOG0555|consensus 100.0 1.6E-83 3.5E-88 657.8 23.6 377 67-447 120-539 (545)
22 TIGR00459 aspS_bact aspartyl-t 100.0 3.6E-83 7.8E-88 716.0 28.4 374 55-456 4-562 (583)
23 COG0173 AspS Aspartyl-tRNA syn 100.0 1E-82 2.2E-87 683.6 23.8 372 54-452 3-561 (585)
24 KOG0556|consensus 100.0 4.2E-82 9E-87 650.1 22.9 369 68-448 80-528 (533)
25 PLN02903 aminoacyl-tRNA ligase 100.0 4.3E-79 9.3E-84 685.0 28.1 379 53-455 59-629 (652)
26 PRK00476 aspS aspartyl-tRNA sy 100.0 1.9E-77 4.1E-82 675.3 26.7 377 54-456 5-567 (588)
27 cd00776 AsxRS_core Asx tRNA sy 100.0 6.9E-78 1.5E-82 639.2 20.6 303 138-447 4-320 (322)
28 PRK12820 bifunctional aspartyl 100.0 6.8E-77 1.5E-81 673.4 27.4 370 53-450 5-577 (706)
29 KOG0554|consensus 100.0 2.4E-75 5.2E-80 601.3 19.5 371 66-448 16-441 (446)
30 PRK06462 asparagine synthetase 100.0 1.3E-75 2.9E-80 624.0 17.4 302 138-448 10-330 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 3.3E-74 7.2E-79 616.5 12.5 300 139-447 3-333 (335)
32 KOG2411|consensus 100.0 1.8E-70 3.8E-75 575.8 20.6 379 54-456 35-606 (628)
33 TIGR00462 genX lysyl-tRNA synt 100.0 4.6E-70 1E-74 574.6 21.0 262 160-444 9-304 (304)
34 cd00775 LysRS_core Lys_tRNA sy 100.0 1.1E-69 2.4E-74 577.7 23.0 279 160-446 16-326 (329)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 3.1E-68 6.6E-73 550.8 23.5 251 160-446 9-266 (269)
36 PRK09350 poxB regulator PoxA; 100.0 2.2E-63 4.7E-68 524.4 20.4 258 160-441 13-306 (306)
37 cd00777 AspRS_core Asp tRNA sy 100.0 1.2E-62 2.6E-67 511.9 19.5 257 160-446 9-277 (280)
38 COG2269 Truncated, possibly in 100.0 1.4E-55 3E-60 439.0 12.5 262 160-447 24-320 (322)
39 KOG0555|consensus 100.0 3.7E-34 8E-39 294.7 18.9 218 440-658 51-268 (545)
40 KOG1885|consensus 100.0 5.4E-31 1.2E-35 276.9 16.1 210 443-658 6-250 (560)
41 PLN02502 lysyl-tRNA synthetase 100.0 3.4E-30 7.3E-35 288.8 22.5 206 446-658 9-254 (553)
42 PLN02850 aspartate-tRNA ligase 100.0 4.9E-30 1.1E-34 287.2 18.5 160 497-658 65-250 (530)
43 PTZ00401 aspartyl-tRNA synthet 100.0 6.8E-30 1.5E-34 286.1 19.6 160 497-658 61-238 (550)
44 COG0173 AspS Aspartyl-tRNA syn 100.0 8.3E-29 1.8E-33 267.7 16.0 148 508-658 11-166 (585)
45 PRK00484 lysS lysyl-tRNA synth 100.0 4.3E-28 9.3E-33 270.5 20.0 179 473-658 5-197 (491)
46 PRK12445 lysyl-tRNA synthetase 100.0 5.2E-28 1.1E-32 269.8 20.6 181 470-658 14-209 (505)
47 PTZ00417 lysine-tRNA ligase; P 100.0 7E-28 1.5E-32 271.0 20.5 180 472-658 83-278 (585)
48 TIGR00499 lysS_bact lysyl-tRNA 100.0 1.4E-27 3E-32 266.4 20.2 179 473-658 4-197 (496)
49 KOG0556|consensus 99.9 3.6E-27 7.8E-32 244.3 17.9 168 489-658 58-253 (533)
50 TIGR00459 aspS_bact aspartyl-t 99.9 4.8E-27 1E-31 264.2 19.0 147 509-658 12-163 (583)
51 COG0017 AsnS Aspartyl/asparagi 99.9 6.8E-27 1.5E-31 250.8 17.6 150 502-658 5-159 (435)
52 PLN02903 aminoacyl-tRNA ligase 99.9 1.1E-26 2.3E-31 262.3 18.9 149 508-658 68-229 (652)
53 COG1190 LysU Lysyl-tRNA synthe 99.9 1.1E-26 2.4E-31 250.2 16.5 181 470-658 9-205 (502)
54 PRK00476 aspS aspartyl-tRNA sy 99.9 3E-26 6.5E-31 259.6 19.6 147 509-658 14-166 (588)
55 PRK02983 lysS lysyl-tRNA synth 99.9 3.3E-26 7.1E-31 274.6 20.7 179 472-658 611-795 (1094)
56 PRK05159 aspC aspartyl-tRNA sy 99.9 3.6E-26 7.8E-31 252.6 19.1 152 502-658 5-161 (437)
57 PRK12820 bifunctional aspartyl 99.9 3.5E-26 7.6E-31 260.4 18.8 150 508-658 14-181 (706)
58 TIGR00458 aspS_arch aspartyl-t 99.9 7E-26 1.5E-30 249.4 17.9 145 509-658 9-158 (428)
59 PTZ00385 lysyl-tRNA synthetase 99.9 1.2E-25 2.5E-30 253.7 19.1 141 512-658 107-258 (659)
60 PLN02221 asparaginyl-tRNA synt 99.9 1.4E-25 3.1E-30 251.4 18.7 148 508-658 46-196 (572)
61 PRK03932 asnC asparaginyl-tRNA 99.9 3.7E-25 8E-30 245.1 18.3 145 508-658 12-158 (450)
62 TIGR00457 asnS asparaginyl-tRN 99.9 7.7E-25 1.7E-29 242.4 18.1 146 508-658 12-161 (453)
63 PTZ00425 asparagine-tRNA ligas 99.9 4E-24 8.7E-29 239.3 17.9 151 508-658 77-240 (586)
64 PLN02603 asparaginyl-tRNA synt 99.9 6.6E-24 1.4E-28 238.1 17.5 145 508-658 103-251 (565)
65 PLN02532 asparagine-tRNA synth 99.8 7.2E-21 1.6E-25 214.2 15.6 130 524-658 129-260 (633)
66 cd04317 EcAspRS_like_N EcAspRS 99.8 1.4E-20 3E-25 176.0 14.3 117 509-628 11-134 (135)
67 cd04322 LysRS_N LysRS_N: N-ter 99.8 9.5E-20 2.1E-24 163.8 13.0 104 514-624 1-108 (108)
68 KOG2411|consensus 99.8 9.9E-20 2.1E-24 193.3 14.0 149 508-658 43-204 (628)
69 cd04319 PhAsnRS_like_N PhAsnRS 99.7 2.2E-17 4.7E-22 147.2 13.4 101 514-622 1-103 (103)
70 KOG0554|consensus 99.7 6.4E-17 1.4E-21 168.8 13.3 140 508-658 16-157 (446)
71 cd04320 AspRS_cyto_N AspRS_cyt 99.7 6.9E-16 1.5E-20 137.2 13.0 86 514-599 1-93 (102)
72 cd04316 ND_PkAspRS_like_N ND_P 99.6 2.3E-15 5E-20 135.3 14.0 88 509-600 9-99 (108)
73 cd04321 ScAspRS_mt_like_N ScAs 99.6 3.3E-15 7.1E-20 128.7 11.9 84 514-597 1-86 (86)
74 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.6 4.3E-15 9.3E-20 127.7 12.0 83 514-597 1-85 (85)
75 cd04323 AsnRS_cyto_like_N AsnR 99.6 7.3E-15 1.6E-19 126.0 12.8 83 514-597 1-84 (84)
76 cd04318 EcAsnRS_like_N EcAsnRS 99.6 4.4E-14 9.6E-19 120.5 11.9 79 514-596 1-81 (82)
77 TIGR02367 PylS pyrrolysyl-tRNA 99.4 9.4E-13 2E-17 142.2 14.8 97 160-260 247-362 (453)
78 cd00645 AsnA Asparagine synthe 99.4 3E-12 6.5E-17 130.6 15.5 256 167-444 17-299 (309)
79 PRK09537 pylS pyrolysyl-tRNA s 99.4 1.3E-12 2.7E-17 141.7 13.5 174 160-441 211-403 (417)
80 cd00768 class_II_aaRS-like_cor 99.4 1.9E-12 4.1E-17 128.7 10.6 93 160-252 7-111 (211)
81 cd04317 EcAspRS_like_N EcAspRS 99.4 2.1E-12 4.7E-17 120.7 9.6 66 68-134 12-78 (135)
82 PTZ00213 asparagine synthetase 99.4 1.5E-11 3.3E-16 126.8 16.2 264 160-445 16-336 (348)
83 PRK05425 asparagine synthetase 99.4 2E-11 4.3E-16 125.8 16.6 263 160-446 16-311 (327)
84 PF01409 tRNA-synt_2d: tRNA sy 99.3 2.7E-11 5.8E-16 124.3 15.4 108 160-268 24-154 (247)
85 cd04322 LysRS_N LysRS_N: N-ter 99.2 2.4E-11 5.2E-16 109.2 9.1 71 72-143 1-75 (108)
86 PRK00488 pheS phenylalanyl-tRN 99.2 2.1E-10 4.6E-15 121.4 16.0 108 160-268 115-237 (339)
87 TIGR00669 asnA aspartate--ammo 99.2 4.3E-10 9.4E-15 115.7 17.1 263 160-445 13-317 (330)
88 cd04321 ScAspRS_mt_like_N ScAs 99.2 6.9E-11 1.5E-15 101.8 9.0 71 72-143 1-79 (86)
89 cd04320 AspRS_cyto_N AspRS_cyt 99.2 1.5E-10 3.2E-15 102.9 9.3 72 72-143 1-84 (102)
90 cd04316 ND_PkAspRS_like_N ND_P 99.1 2.8E-10 6E-15 102.3 10.1 75 68-143 10-89 (108)
91 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.1 2.7E-10 5.8E-15 97.8 9.5 71 72-143 1-78 (85)
92 cd04318 EcAsnRS_like_N EcAsnRS 99.1 2.5E-10 5.4E-15 97.4 9.0 72 72-144 1-76 (82)
93 cd04323 AsnRS_cyto_like_N AsnR 99.1 4.5E-10 9.7E-15 96.3 8.9 64 72-136 1-65 (84)
94 PTZ00326 phenylalanyl-tRNA syn 99.1 9.8E-10 2.1E-14 121.6 12.9 46 218-264 358-405 (494)
95 COG0016 PheS Phenylalanyl-tRNA 99.0 2.4E-09 5.1E-14 112.9 14.2 107 160-268 118-244 (335)
96 cd04319 PhAsnRS_like_N PhAsnRS 99.0 1.1E-09 2.4E-14 97.5 9.3 71 72-143 1-75 (103)
97 PLN02853 Probable phenylalanyl 99.0 2.6E-09 5.7E-14 117.6 12.6 48 218-266 343-392 (492)
98 PF01336 tRNA_anti-codon: OB-f 99.0 7.9E-09 1.7E-13 85.7 11.5 75 515-595 1-75 (75)
99 TIGR00468 pheS phenylalanyl-tR 98.8 9E-08 2E-12 101.1 15.5 103 160-266 79-200 (294)
100 PRK04172 pheS phenylalanyl-tRN 98.7 2.7E-07 5.9E-12 104.2 15.4 47 218-265 351-399 (489)
101 TIGR00470 sepS O-phosphoseryl- 98.5 2.9E-07 6.3E-12 100.0 10.0 49 218-267 208-259 (533)
102 PLN02788 phenylalanine-tRNA sy 98.5 1.8E-06 3.9E-11 93.9 16.1 87 160-250 75-179 (402)
103 PF01336 tRNA_anti-codon: OB-f 98.3 2.7E-06 5.9E-11 70.4 8.7 69 73-142 1-69 (75)
104 cd00773 HisRS-like_core Class 98.3 2.7E-05 5.9E-10 80.9 17.8 92 160-252 10-116 (261)
105 cd00496 PheRS_alpha_core Pheny 98.3 5E-06 1.1E-10 84.2 10.9 105 160-267 8-131 (218)
106 TIGR00469 pheS_mito phenylalan 98.2 2.3E-05 5.1E-10 86.1 14.8 57 366-441 280-338 (460)
107 PF00587 tRNA-synt_2b: tRNA sy 98.0 2.8E-05 6E-10 75.7 9.0 109 160-269 7-136 (173)
108 cd00779 ProRS_core_prok Prolyl 97.6 0.00019 4E-09 74.5 8.0 106 160-266 39-164 (255)
109 cd00670 Gly_His_Pro_Ser_Thr_tR 97.5 0.00025 5.4E-09 72.1 7.9 93 160-252 10-125 (235)
110 cd00772 ProRS_core Prolyl-tRNA 97.5 0.00054 1.2E-08 71.5 10.4 107 160-267 40-171 (264)
111 cd00778 ProRS_core_arch_euk Pr 97.4 0.0002 4.3E-09 74.6 6.1 108 160-267 40-171 (261)
112 COG2502 AsnA Asparagine synthe 97.4 0.0041 8.9E-08 62.7 14.6 265 161-445 18-317 (330)
113 TIGR00409 proS_fam_II prolyl-t 97.3 0.0012 2.6E-08 76.1 11.5 111 160-271 55-188 (568)
114 PRK09194 prolyl-tRNA synthetas 97.3 0.0012 2.7E-08 76.1 10.9 111 160-271 55-188 (565)
115 cd00771 ThrRS_core Threonyl-tR 97.3 0.0011 2.3E-08 70.5 9.2 104 160-265 38-161 (298)
116 TIGR00442 hisS histidyl-tRNA s 97.2 0.00095 2.1E-08 73.6 9.0 92 160-252 22-131 (397)
117 PRK05431 seryl-tRNA synthetase 97.2 0.0011 2.3E-08 73.8 8.9 106 160-268 178-306 (425)
118 TIGR00414 serS seryl-tRNA synt 97.1 0.0015 3.2E-08 72.6 9.1 106 160-268 181-308 (418)
119 KOG2784|consensus 97.1 0.00039 8.5E-09 73.1 4.2 49 216-265 330-382 (483)
120 PRK00037 hisS histidyl-tRNA sy 97.1 0.0014 3.1E-08 72.5 9.0 92 160-252 26-132 (412)
121 PRK12444 threonyl-tRNA synthet 97.1 0.0018 3.9E-08 76.0 9.5 107 160-268 282-408 (639)
122 cd00774 GlyRS-like_core Glycyl 97.1 0.00069 1.5E-08 70.2 5.2 85 160-251 40-143 (254)
123 PLN02908 threonyl-tRNA synthet 97.0 0.0021 4.5E-08 75.9 9.6 109 160-269 329-456 (686)
124 cd04487 RecJ_OBF2_like RecJ_OB 96.9 0.0079 1.7E-07 50.2 9.3 73 515-595 1-73 (73)
125 PRK03991 threonyl-tRNA synthet 96.8 0.0033 7.2E-08 73.0 8.8 112 160-271 235-366 (613)
126 cd04489 ExoVII_LU_OBF ExoVII_L 96.8 0.019 4.2E-07 47.8 11.1 74 515-593 2-75 (78)
127 cd00770 SerRS_core Seryl-tRNA 96.8 0.0028 6.1E-08 67.3 7.3 106 160-268 60-187 (297)
128 PRK00413 thrS threonyl-tRNA sy 96.7 0.0062 1.4E-07 71.4 9.7 104 160-265 278-402 (638)
129 PRK14799 thrS threonyl-tRNA sy 96.7 0.0067 1.4E-07 69.5 9.3 108 160-269 176-303 (545)
130 PRK12305 thrS threonyl-tRNA sy 96.6 0.0073 1.6E-07 70.0 9.8 110 160-270 214-343 (575)
131 TIGR00408 proS_fam_I prolyl-tR 96.6 0.0039 8.5E-08 70.4 7.0 108 160-267 46-177 (472)
132 TIGR00418 thrS threonyl-tRNA s 96.6 0.011 2.4E-07 68.3 10.6 103 160-265 208-332 (563)
133 PRK08661 prolyl-tRNA synthetas 96.5 0.006 1.3E-07 69.0 7.7 105 160-265 52-180 (477)
134 PRK12325 prolyl-tRNA synthetas 96.3 0.02 4.3E-07 64.2 10.5 106 160-267 55-181 (439)
135 PF13742 tRNA_anti_2: OB-fold 96.3 0.035 7.6E-07 49.1 9.5 77 512-593 21-98 (99)
136 CHL00201 syh histidine-tRNA sy 96.2 0.017 3.8E-07 64.5 9.3 91 160-251 26-135 (430)
137 PRK12292 hisZ ATP phosphoribos 96.2 0.015 3.2E-07 64.2 8.5 104 160-266 25-150 (391)
138 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.1 0.049 1.1E-06 47.3 9.9 77 515-598 2-80 (95)
139 PLN02837 threonine-tRNA ligase 96.1 0.017 3.6E-07 67.5 8.5 108 160-269 255-383 (614)
140 PRK12293 hisZ ATP phosphoribos 96.1 0.023 4.9E-07 59.9 8.8 99 160-267 27-139 (281)
141 TIGR00443 hisZ_biosyn_reg ATP 96.0 0.023 5.1E-07 60.7 8.5 90 160-251 16-120 (314)
142 cd04489 ExoVII_LU_OBF ExoVII_L 95.9 0.05 1.1E-06 45.3 8.4 61 73-134 2-62 (78)
143 PLN02678 seryl-tRNA synthetase 95.9 0.028 6.1E-07 62.8 8.8 107 160-267 182-312 (448)
144 PRK12421 ATP phosphoribosyltra 95.9 0.037 8E-07 61.1 9.6 105 160-267 29-154 (392)
145 cd04482 RPA2_OBF_like RPA2_OBF 95.8 0.079 1.7E-06 46.1 9.4 74 516-598 2-77 (91)
146 PF13393 tRNA-synt_His: Histid 95.8 0.056 1.2E-06 57.5 10.3 103 160-265 18-139 (311)
147 PLN02530 histidine-tRNA ligase 95.7 0.04 8.8E-07 62.6 9.3 90 160-252 92-198 (487)
148 PLN02972 Histidyl-tRNA synthet 95.4 0.071 1.5E-06 62.8 9.9 104 160-266 349-470 (763)
149 COG0124 HisS Histidyl-tRNA syn 95.3 0.075 1.6E-06 59.0 9.3 103 160-265 26-152 (429)
150 PRK12420 histidyl-tRNA synthet 95.2 0.062 1.3E-06 60.0 8.5 104 160-266 26-151 (423)
151 COG1107 Archaea-specific RecJ- 95.2 0.032 6.8E-07 62.5 5.8 87 502-596 203-289 (715)
152 cd04485 DnaE_OBF DnaE_OBF: A s 95.0 0.12 2.6E-06 42.8 8.0 73 517-596 2-78 (84)
153 PRK12295 hisZ ATP phosphoribos 95.0 0.12 2.7E-06 56.6 10.0 101 160-266 12-132 (373)
154 PRK09537 pylS pyrolysyl-tRNA s 94.9 0.017 3.7E-07 63.6 2.9 45 610-658 179-228 (417)
155 PLN02320 seryl-tRNA synthetase 94.9 0.065 1.4E-06 60.4 7.6 105 160-269 241-370 (502)
156 PRK04173 glycyl-tRNA synthetas 94.9 0.061 1.3E-06 60.5 7.4 48 219-269 188-239 (456)
157 cd04483 hOBFC1_like hOBFC1_lik 94.8 0.3 6.5E-06 42.6 10.0 70 517-593 2-90 (92)
158 cd04492 YhaM_OBF_like YhaM_OBF 94.7 0.57 1.2E-05 38.9 11.1 66 524-597 13-78 (83)
159 cd04487 RecJ_OBF2_like RecJ_OB 94.3 0.29 6.3E-06 40.8 8.2 67 73-142 1-67 (73)
160 cd03524 RPA2_OBF_family RPA2_O 94.2 0.42 9E-06 38.0 9.1 69 517-592 2-73 (75)
161 PF04076 BOF: Bacterial OB fol 93.7 0.8 1.7E-05 40.8 10.4 72 509-593 31-102 (103)
162 PRK07373 DNA polymerase III su 93.6 0.3 6.6E-06 54.8 9.4 78 511-595 279-360 (449)
163 COG4085 Predicted RNA-binding 93.6 0.43 9.4E-06 46.6 9.0 74 503-576 42-120 (204)
164 PF10451 Stn1: Telomere regula 93.6 0.42 9.1E-06 49.6 9.6 76 512-597 66-149 (256)
165 PF13742 tRNA_anti_2: OB-fold 93.5 0.31 6.7E-06 43.0 7.4 72 71-142 22-94 (99)
166 COG3111 Periplasmic protein wi 93.3 0.59 1.3E-05 42.5 8.9 84 499-595 43-127 (128)
167 COG4085 Predicted RNA-binding 93.2 0.44 9.5E-06 46.6 8.5 80 65-145 46-130 (204)
168 cd04479 RPA3 RPA3: A subfamily 93.2 0.73 1.6E-05 40.9 9.3 70 507-597 10-80 (101)
169 cd04478 RPA2_DBD_D RPA2_DBD_D: 93.1 0.34 7.4E-06 42.0 7.0 62 73-135 2-65 (95)
170 PRK00960 seryl-tRNA synthetase 93.0 0.12 2.6E-06 58.6 5.1 47 219-266 337-386 (517)
171 TIGR00415 serS_MJ seryl-tRNA s 92.9 0.43 9.4E-06 53.8 9.1 68 199-267 309-387 (520)
172 cd04490 PolII_SU_OBF PolII_SU_ 92.6 1.6 3.4E-05 36.9 10.2 58 515-573 2-61 (79)
173 cd03524 RPA2_OBF_family RPA2_O 92.2 0.62 1.3E-05 37.0 7.0 58 75-133 2-62 (75)
174 COG0172 SerS Seryl-tRNA synthe 91.9 0.33 7.1E-06 53.7 6.6 104 161-267 183-308 (429)
175 PRK09616 pheT phenylalanyl-tRN 91.9 0.73 1.6E-05 53.3 9.7 105 160-265 366-487 (552)
176 cd04482 RPA2_OBF_like RPA2_OBF 91.5 0.9 2E-05 39.5 7.6 61 73-134 1-64 (91)
177 PRK06826 dnaE DNA polymerase I 91.5 0.7 1.5E-05 57.6 9.4 80 511-596 990-1073(1151)
178 PRK12294 hisZ ATP phosphoribos 91.3 0.92 2E-05 47.6 8.9 89 160-258 15-117 (272)
179 TIGR00156 conserved hypothetic 91.3 1.6 3.6E-05 40.2 9.4 71 509-593 54-125 (126)
180 PF12869 tRNA_anti-like: tRNA_ 91.3 0.59 1.3E-05 43.8 6.8 66 508-573 63-130 (144)
181 PF04076 BOF: Bacterial OB fol 90.9 0.72 1.6E-05 41.1 6.4 66 56-132 24-89 (103)
182 PRK10053 hypothetical protein; 90.8 2 4.4E-05 39.9 9.5 71 509-593 58-129 (130)
183 cd04485 DnaE_OBF DnaE_OBF: A s 90.8 0.72 1.6E-05 38.0 6.2 48 85-133 16-63 (84)
184 cd04484 polC_OBF polC_OBF: A s 90.7 3.9 8.4E-05 34.8 10.6 74 515-593 2-80 (82)
185 COG3111 Periplasmic protein wi 90.7 1.5 3.4E-05 39.9 8.3 59 68-133 55-113 (128)
186 PRK07374 dnaE DNA polymerase I 90.6 0.92 2E-05 56.6 9.3 78 511-595 999-1080(1170)
187 PRK06920 dnaE DNA polymerase I 90.5 0.86 1.9E-05 56.5 8.8 80 510-596 941-1024(1107)
188 cd04483 hOBFC1_like hOBFC1_lik 90.3 1.2 2.5E-05 38.9 7.2 59 75-134 2-79 (92)
189 PRK05672 dnaE2 error-prone DNA 90.2 1.1 2.3E-05 55.6 9.3 80 511-597 952-1033(1046)
190 COG1570 XseA Exonuclease VII, 89.9 1.4 3.1E-05 48.8 9.0 78 512-594 23-100 (440)
191 PRK05673 dnaE DNA polymerase I 89.0 1.3 2.9E-05 55.2 9.0 80 511-597 976-1059(1135)
192 cd04488 RecG_wedge_OBF RecG_we 88.9 4.3 9.3E-05 32.6 9.3 56 517-574 2-60 (75)
193 COG0442 ProS Prolyl-tRNA synth 88.7 0.98 2.1E-05 51.2 6.9 106 160-265 55-179 (500)
194 cd04474 RPA1_DBD_A RPA1_DBD_A: 88.7 2.4 5.1E-05 37.7 8.1 77 513-591 10-98 (104)
195 TIGR00156 conserved hypothetic 88.4 1.1 2.4E-05 41.3 5.8 58 68-132 55-112 (126)
196 PRK07279 dnaE DNA polymerase I 88.1 1.7 3.6E-05 53.5 8.9 77 512-595 884-965 (1034)
197 cd04490 PolII_SU_OBF PolII_SU_ 88.1 2.7 5.8E-05 35.5 7.7 57 73-132 2-62 (79)
198 PRK07373 DNA polymerase III su 87.7 1.3 2.9E-05 49.7 7.2 64 69-133 279-346 (449)
199 cd04492 YhaM_OBF_like YhaM_OBF 87.5 4 8.7E-05 33.7 8.5 48 84-133 15-62 (83)
200 PF08661 Rep_fac-A_3: Replicat 86.3 5.2 0.00011 35.9 8.9 58 506-573 12-70 (109)
201 TIGR00237 xseA exodeoxyribonuc 86.3 4 8.7E-05 45.8 10.0 79 513-596 18-96 (432)
202 PRK00286 xseA exodeoxyribonucl 85.6 4.9 0.00011 45.0 10.3 80 512-596 23-102 (438)
203 COG5235 RFA2 Single-stranded D 85.2 5.4 0.00012 39.6 8.9 76 514-596 68-144 (258)
204 COG1107 Archaea-specific RecJ- 84.7 1.8 4E-05 49.0 6.1 65 68-135 211-276 (715)
205 PF03100 CcmE: CcmE; InterPro 84.5 13 0.00029 34.5 11.0 74 510-600 48-125 (131)
206 PRK10053 hypothetical protein; 84.4 2.6 5.7E-05 39.1 6.1 58 68-132 59-116 (130)
207 PRK13254 cytochrome c-type bio 83.5 11 0.00024 35.9 10.1 75 509-600 48-125 (148)
208 cd04488 RecG_wedge_OBF RecG_we 83.4 7.2 0.00016 31.2 7.9 46 86-133 16-61 (75)
209 PF12869 tRNA_anti-like: tRNA_ 83.1 4.1 8.8E-05 38.0 7.1 67 67-133 64-132 (144)
210 PRK07459 single-stranded DNA-b 82.9 15 0.00033 33.6 10.6 84 514-598 5-104 (121)
211 PRK06826 dnaE DNA polymerase I 82.3 4 8.7E-05 51.1 8.5 64 69-133 990-1057(1151)
212 KOG2783|consensus 82.2 0.7 1.5E-05 49.8 1.6 35 216-251 150-184 (436)
213 TIGR00344 alaS alanine--tRNA l 82.1 13 0.00028 45.3 12.5 35 417-451 213-248 (851)
214 PF00436 SSB: Single-strand bi 81.9 11 0.00024 32.8 9.0 52 543-595 50-104 (104)
215 PRK13480 3'-5' exoribonuclease 81.8 15 0.00033 39.4 11.6 79 512-598 11-93 (314)
216 PRK06863 single-stranded DNA-b 81.6 18 0.00038 35.3 10.9 85 513-598 5-111 (168)
217 COG0441 ThrS Threonyl-tRNA syn 81.5 1.9 4.1E-05 49.9 4.9 109 160-270 228-356 (589)
218 PRK05672 dnaE2 error-prone DNA 81.4 4.2 9.2E-05 50.5 8.2 72 69-142 952-1025(1046)
219 COG5235 RFA2 Single-stranded D 81.4 5.8 0.00012 39.4 7.4 66 70-136 66-132 (258)
220 PRK06920 dnaE DNA polymerase I 81.2 3.2 7E-05 51.6 7.1 64 69-133 942-1009(1107)
221 PRK10917 ATP-dependent DNA hel 81.1 4.9 0.00011 47.8 8.4 64 68-132 57-122 (681)
222 TIGR00617 rpa1 replication fac 80.0 11 0.00023 44.3 10.4 97 500-599 179-286 (608)
223 PRK07374 dnaE DNA polymerase I 79.9 3.9 8.6E-05 51.2 7.3 64 69-133 999-1066(1170)
224 PF03100 CcmE: CcmE; InterPro 79.9 11 0.00024 35.0 8.6 56 69-130 49-108 (131)
225 PRK12366 replication factor A; 79.9 8.4 0.00018 45.4 9.6 91 502-595 280-380 (637)
226 PF15072 DUF4539: Domain of un 79.7 6.9 0.00015 33.7 6.6 59 74-134 6-64 (86)
227 PRK08486 single-stranded DNA-b 78.9 15 0.00031 36.3 9.5 58 541-599 49-109 (182)
228 PRK02801 primosomal replicatio 78.8 27 0.00058 30.9 10.4 52 542-595 49-100 (101)
229 PF08661 Rep_fac-A_3: Replicat 77.6 10 0.00022 34.0 7.4 57 68-134 16-73 (109)
230 PF10451 Stn1: Telomere regula 76.8 7.4 0.00016 40.5 7.1 62 69-131 65-133 (256)
231 PRK06461 single-stranded DNA-b 76.3 27 0.00059 32.3 10.1 84 502-597 5-100 (129)
232 PRK05673 dnaE DNA polymerase I 76.3 5.8 0.00013 49.7 7.2 64 69-133 976-1043(1135)
233 PRK15491 replication factor A; 75.5 12 0.00026 41.1 8.7 91 502-599 58-157 (374)
234 PRK13254 cytochrome c-type bio 75.3 13 0.00028 35.4 7.7 59 68-132 49-110 (148)
235 PRK07275 single-stranded DNA-b 75.1 28 0.00061 33.7 10.1 84 514-598 4-106 (162)
236 COG2024 Phenylalanyl-tRNA synt 75.1 1.8 3.9E-05 46.6 2.1 36 407-442 313-349 (536)
237 COG1570 XseA Exonuclease VII, 75.0 9.6 0.00021 42.4 7.7 66 71-137 24-90 (440)
238 PRK06751 single-stranded DNA-b 74.7 36 0.00078 33.3 10.9 56 542-598 48-106 (173)
239 PRK07279 dnaE DNA polymerase I 74.6 5.8 0.00013 49.0 6.5 63 70-133 884-951 (1034)
240 PRK06752 single-stranded DNA-b 74.3 45 0.00098 29.9 10.8 56 542-598 48-106 (112)
241 PRK13150 cytochrome c-type bio 74.0 47 0.001 32.0 11.1 75 510-601 55-133 (159)
242 PRK12292 hisZ ATP phosphoribos 74.0 2.4 5.2E-05 46.8 2.9 44 366-431 275-319 (391)
243 KOG2324|consensus 73.8 7 0.00015 42.1 6.0 110 160-272 60-191 (457)
244 PRK10917 ATP-dependent DNA hel 73.4 29 0.00064 41.3 11.9 64 510-574 57-122 (681)
245 PRK06293 single-stranded DNA-b 73.3 45 0.00098 32.2 11.0 56 542-598 44-102 (161)
246 cd00769 PheRS_beta_core Phenyl 73.0 9.6 0.00021 37.7 6.7 102 160-265 7-135 (198)
247 cd04491 SoSSB_OBF SoSSB_OBF: A 72.8 29 0.00064 29.0 8.7 54 530-593 23-77 (82)
248 PRK14699 replication factor A; 72.4 18 0.00039 41.2 9.3 90 502-598 58-156 (484)
249 TIGR00643 recG ATP-dependent D 71.9 12 0.00026 44.1 8.1 64 68-134 30-97 (630)
250 cd04474 RPA1_DBD_A RPA1_DBD_A: 70.9 12 0.00026 33.2 6.1 62 71-133 10-81 (104)
251 TIGR00621 ssb single stranded 70.5 48 0.001 32.0 10.6 56 542-598 52-110 (164)
252 PF04057 Rep-A_N: Replication 70.2 38 0.00083 30.0 9.1 63 530-596 38-100 (101)
253 PLN02900 alanyl-tRNA synthetas 69.9 39 0.00085 41.7 12.0 36 417-452 239-275 (936)
254 PRK07135 dnaE DNA polymerase I 69.6 12 0.00026 46.1 7.6 62 511-574 896-960 (973)
255 COG3689 Predicted membrane pro 69.3 19 0.00042 37.2 7.8 89 508-599 171-263 (271)
256 cd04484 polC_OBF polC_OBF: A s 69.1 26 0.00056 29.7 7.5 59 73-132 2-65 (82)
257 PRK13165 cytochrome c-type bio 68.8 60 0.0013 31.4 10.6 74 510-600 55-132 (160)
258 PRK08763 single-stranded DNA-b 68.5 51 0.0011 32.0 10.2 84 514-598 7-111 (164)
259 cd04479 RPA3 RPA3: A subfamily 68.2 22 0.00048 31.4 7.2 53 68-132 13-66 (101)
260 PRK00252 alaS alanyl-tRNA synt 68.0 45 0.00098 40.9 12.0 38 417-454 219-257 (865)
261 PF15072 DUF4539: Domain of un 68.0 21 0.00047 30.7 6.7 59 516-576 6-64 (86)
262 KOG3108|consensus 66.8 40 0.00087 35.2 9.7 61 513-574 69-130 (265)
263 COG1571 Predicted DNA-binding 66.4 29 0.00063 38.5 9.0 73 513-596 267-342 (421)
264 PRK12421 ATP phosphoribosyltra 66.0 5.4 0.00012 44.1 3.5 47 366-434 282-329 (392)
265 TIGR00237 xseA exodeoxyribonuc 65.7 21 0.00046 40.1 8.1 97 71-175 18-120 (432)
266 PF13567 DUF4131: Domain of un 65.5 46 0.00099 30.9 9.4 60 512-576 75-145 (176)
267 PRK07080 hypothetical protein; 65.3 9.4 0.0002 40.7 4.8 50 218-268 152-202 (317)
268 PRK15491 replication factor A; 64.8 19 0.00041 39.7 7.3 62 71-132 68-138 (374)
269 cd04486 YhcR_OBF_like YhcR_OBF 64.4 54 0.0012 27.5 8.5 67 516-596 1-76 (78)
270 PRK05813 single-stranded DNA-b 63.6 75 0.0016 32.3 10.8 84 513-598 110-210 (219)
271 PRK00036 primosomal replicatio 63.0 20 0.00043 32.2 5.8 54 540-598 46-99 (107)
272 PRK06642 single-stranded DNA-b 62.2 77 0.0017 30.3 10.1 86 513-598 6-117 (152)
273 PRK00286 xseA exodeoxyribonucl 61.9 27 0.00059 39.1 8.2 100 70-175 23-126 (438)
274 KOG2509|consensus 61.9 9.1 0.0002 42.3 4.1 103 161-266 194-320 (455)
275 cd04496 SSB_OBF SSB_OBF: A sub 61.7 17 0.00038 31.1 5.3 55 540-595 43-100 (100)
276 TIGR00443 hisZ_biosyn_reg ATP 61.6 10 0.00022 40.5 4.4 46 366-433 267-313 (314)
277 PRK07211 replication factor A; 61.3 48 0.001 37.7 9.8 82 503-593 55-147 (485)
278 PRK04036 DNA polymerase II sma 60.9 50 0.0011 37.9 10.1 62 511-572 152-214 (504)
279 PF03590 AsnA: Aspartate-ammon 60.3 66 0.0014 33.0 9.5 108 167-275 23-146 (244)
280 PRK06958 single-stranded DNA-b 60.2 68 0.0015 31.6 9.5 56 542-598 53-111 (182)
281 CHL00201 syh histidine-tRNA sy 57.9 13 0.00027 41.8 4.5 18 417-434 300-317 (430)
282 PRK07274 single-stranded DNA-b 57.8 1.2E+02 0.0026 28.1 10.4 55 543-598 49-105 (131)
283 PRK07135 dnaE DNA polymerase I 57.8 24 0.00051 43.6 7.1 62 70-133 897-961 (973)
284 PRK12366 replication factor A; 55.6 51 0.0011 39.0 9.2 86 499-592 61-155 (637)
285 PRK13159 cytochrome c-type bio 55.3 1.5E+02 0.0032 28.5 10.6 74 509-600 48-125 (155)
286 PRK13165 cytochrome c-type bio 54.8 75 0.0016 30.7 8.5 59 68-132 55-117 (160)
287 TIGR00442 hisS histidyl-tRNA s 54.5 15 0.00032 40.5 4.4 50 365-435 261-313 (397)
288 COG0423 GRS1 Glycyl-tRNA synth 53.7 5.8 0.00013 44.8 1.0 49 197-249 158-221 (558)
289 PRK07217 replication factor A; 53.2 3E+02 0.0065 29.5 13.5 84 501-595 72-158 (311)
290 PRK06341 single-stranded DNA-b 53.1 1.5E+02 0.0034 28.7 10.6 56 543-598 55-117 (166)
291 PRK13732 single-stranded DNA-b 53.0 1.2E+02 0.0027 29.6 10.0 86 513-599 7-116 (175)
292 COG1200 RecG RecG-like helicas 52.7 1.3E+02 0.0028 35.6 11.5 80 509-596 57-139 (677)
293 PF11736 DUF3299: Protein of u 51.9 1.4E+02 0.003 28.4 9.8 80 508-593 51-143 (146)
294 PRK05813 single-stranded DNA-b 51.7 1.2E+02 0.0027 30.8 10.1 85 511-598 7-103 (219)
295 COG0124 HisS Histidyl-tRNA syn 51.2 10 0.00022 42.4 2.4 50 366-436 275-327 (429)
296 COG1200 RecG RecG-like helicas 50.7 41 0.0009 39.5 7.2 66 68-135 58-126 (677)
297 TIGR00643 recG ATP-dependent D 50.7 80 0.0017 37.2 9.9 62 510-574 30-95 (630)
298 PRK14894 glycyl-tRNA synthetas 50.5 9.3 0.0002 43.4 1.9 53 198-253 137-202 (539)
299 PF13567 DUF4131: Domain of un 50.3 87 0.0019 28.9 8.5 61 70-135 75-146 (176)
300 COG0752 GlyQ Glycyl-tRNA synth 49.9 15 0.00033 37.5 3.1 59 362-444 126-184 (298)
301 PRK13150 cytochrome c-type bio 49.6 82 0.0018 30.4 7.9 59 68-132 55-117 (159)
302 TIGR01405 polC_Gram_pos DNA po 48.5 1.2E+02 0.0026 38.7 11.3 81 511-595 6-91 (1213)
303 TIGR00594 polc DNA-directed DN 48.4 27 0.00059 43.5 5.7 37 511-547 980-1021(1022)
304 PRK14699 replication factor A; 48.1 1E+02 0.0022 35.3 9.7 84 511-599 285-377 (484)
305 PRK08182 single-stranded DNA-b 48.0 2.4E+02 0.0051 26.8 10.8 55 542-597 55-112 (148)
306 cd04491 SoSSB_OBF SoSSB_OBF: A 45.0 88 0.0019 26.0 6.7 41 88-132 23-64 (82)
307 KOG1035|consensus 44.7 36 0.00077 42.5 5.7 103 161-266 941-1054(1351)
308 TIGR00594 polc DNA-directed DN 44.5 31 0.00067 43.0 5.3 37 69-105 980-1021(1022)
309 cd04477 RPA1N RPA1N: A subfami 43.3 23 0.00051 31.1 3.0 57 534-595 40-96 (97)
310 PRK12293 hisZ ATP phosphoribos 43.1 27 0.00058 36.8 4.0 39 366-433 242-280 (281)
311 KOG3108|consensus 42.7 82 0.0018 33.0 7.3 63 71-134 69-132 (265)
312 PRK00448 polC DNA polymerase I 42.1 1.5E+02 0.0032 38.5 10.8 81 511-595 235-320 (1437)
313 COG3705 HisZ ATP phosphoribosy 41.8 16 0.00035 40.2 2.1 89 160-251 25-128 (390)
314 cd05694 S1_Rrp5_repeat_hs2_sc2 41.7 53 0.0011 27.2 4.7 48 516-570 7-54 (74)
315 PRK06461 single-stranded DNA-b 41.3 1.4E+02 0.0031 27.5 8.1 67 71-142 15-89 (129)
316 PRK07211 replication factor A; 41.2 1.5E+02 0.0032 33.9 9.6 89 502-599 162-260 (485)
317 PRK13480 3'-5' exoribonuclease 41.2 1.2E+02 0.0027 32.5 8.6 50 84-135 29-78 (314)
318 PRK07218 replication factor A; 41.0 1.8E+02 0.0039 32.6 10.2 80 501-593 58-144 (423)
319 PLN02734 glycyl-tRNA synthetas 40.9 9.1 0.0002 45.1 0.0 52 197-253 246-312 (684)
320 COG2176 PolC DNA polymerase II 39.9 1.2E+02 0.0027 38.0 9.0 79 513-596 240-324 (1444)
321 TIGR00389 glyS_dimeric glycyl- 39.7 8.1 0.00018 44.5 -0.6 48 197-248 154-216 (551)
322 PRK06253 O-phosphoseryl-tRNA s 39.5 39 0.00085 38.6 4.7 47 219-265 210-258 (529)
323 PRK13159 cytochrome c-type bio 39.3 1.4E+02 0.003 28.8 7.6 57 69-131 50-110 (155)
324 PF02091 tRNA-synt_2e: Glycyl- 39.0 16 0.00036 37.7 1.5 58 361-443 119-177 (284)
325 PRK00037 hisS histidyl-tRNA sy 38.5 37 0.0008 37.6 4.3 49 366-435 263-314 (412)
326 cd00733 GlyRS_alpha_core Class 38.4 19 0.00042 37.0 1.9 58 362-444 121-179 (279)
327 PRK12420 histidyl-tRNA synthet 38.1 37 0.00079 37.9 4.3 51 366-435 279-332 (423)
328 PRK07218 replication factor A; 37.8 2.3E+02 0.005 31.8 10.3 74 512-596 172-252 (423)
329 PRK08402 replication factor A; 37.8 2.1E+02 0.0045 31.3 9.8 88 501-595 62-159 (355)
330 PRK09348 glyQ glycyl-tRNA synt 37.2 19 0.00041 37.1 1.6 58 362-444 125-183 (283)
331 PF03459 TOBE: TOBE domain; I 37.0 1.3E+02 0.0029 23.5 6.3 50 516-569 6-56 (64)
332 PRK07459 single-stranded DNA-b 37.0 1.6E+02 0.0034 26.9 7.5 61 72-133 5-77 (121)
333 PRK14908 glycyl-tRNA synthetas 37.0 20 0.00044 44.0 2.1 59 362-444 126-184 (1000)
334 PRK07772 single-stranded DNA-b 35.0 2.9E+02 0.0063 27.4 9.5 50 542-592 54-106 (186)
335 PRK04036 DNA polymerase II sma 34.6 1.2E+02 0.0027 34.7 7.9 64 69-132 152-216 (504)
336 PRK06386 replication factor A; 34.5 2.8E+02 0.006 30.4 10.1 83 502-598 108-197 (358)
337 cd00770 SerRS_core Seryl-tRNA 33.3 41 0.00089 35.7 3.5 28 631-658 50-77 (297)
338 PF03459 TOBE: TOBE domain; I 32.5 1.6E+02 0.0034 23.0 6.0 50 74-127 6-56 (64)
339 PRK06642 single-stranded DNA-b 31.5 2.1E+02 0.0046 27.3 7.7 62 72-133 7-87 (152)
340 TIGR00471 pheT_arch phenylalan 31.3 1.4E+02 0.0031 34.6 7.8 104 160-266 369-490 (551)
341 TIGR00388 glyQ glycyl-tRNA syn 30.6 27 0.00059 36.1 1.5 58 362-444 122-180 (293)
342 TIGR00638 Mop molybdenum-pteri 30.5 2.5E+02 0.0053 22.1 7.0 50 516-569 8-58 (69)
343 cd05707 S1_Rrp5_repeat_sc11 S1 30.4 1.3E+02 0.0029 23.8 5.3 48 516-569 3-54 (68)
344 cd00496 PheRS_alpha_core Pheny 30.3 35 0.00077 34.4 2.3 25 417-441 188-212 (218)
345 PLN02678 seryl-tRNA synthetase 29.7 54 0.0012 37.0 3.8 27 632-658 173-199 (448)
346 TIGR02367 PylS pyrrolysyl-tRNA 29.0 46 0.00099 37.4 3.0 24 635-658 241-264 (453)
347 PRK12295 hisZ ATP phosphoribos 28.9 49 0.0011 36.4 3.3 46 366-431 323-370 (373)
348 PLN02908 threonyl-tRNA synthet 28.9 49 0.0011 39.5 3.5 28 631-658 319-346 (686)
349 PRK14799 thrS threonyl-tRNA sy 28.8 51 0.0011 38.2 3.5 28 631-658 166-193 (545)
350 PRK01584 alanyl-tRNA synthetas 28.5 48 0.001 38.7 3.2 31 417-447 224-255 (594)
351 PF15490 Ten1_2: Telomere-capp 28.4 4.6E+02 0.01 24.0 9.9 96 65-169 16-118 (118)
352 KOG1936|consensus 28.0 1.5E+02 0.0033 33.1 6.6 118 150-267 58-206 (518)
353 PF15513 DUF4651: Domain of un 27.7 66 0.0014 26.0 2.9 22 634-655 2-23 (62)
354 PF12857 TOBE_3: TOBE-like dom 27.3 3E+02 0.0065 21.4 7.1 49 516-569 6-56 (58)
355 PRK08486 single-stranded DNA-b 26.8 2.5E+02 0.0053 27.7 7.4 34 99-133 49-82 (182)
356 PRK07275 single-stranded DNA-b 26.8 2.7E+02 0.0058 27.0 7.5 61 72-133 4-80 (162)
357 PRK02801 primosomal replicatio 25.7 4.2E+02 0.0091 23.3 8.1 32 100-132 49-80 (101)
358 PRK12325 prolyl-tRNA synthetas 25.6 63 0.0014 36.3 3.5 27 632-658 46-72 (439)
359 PRK04173 glycyl-tRNA synthetas 25.1 61 0.0013 36.7 3.3 26 633-658 38-65 (456)
360 COG1571 Predicted DNA-binding 24.4 1.9E+02 0.004 32.4 6.6 63 71-134 267-332 (421)
361 PF12857 TOBE_3: TOBE-like dom 24.2 2.5E+02 0.0054 21.9 5.7 49 74-127 6-56 (58)
362 PLN02972 Histidyl-tRNA synthet 24.2 64 0.0014 38.8 3.3 30 629-658 337-366 (763)
363 KOG2298|consensus 24.1 18 0.00038 40.5 -1.2 37 612-649 557-594 (599)
364 TIGR03683 A-tRNA_syn_arch alan 23.7 60 0.0013 40.0 3.0 72 160-244 63-144 (902)
365 PRK00413 thrS threonyl-tRNA sy 23.6 70 0.0015 37.6 3.5 28 631-658 268-295 (638)
366 COG2965 PriB Primosomal replic 23.3 2.1E+02 0.0045 25.4 5.3 39 555-594 63-101 (103)
367 COG3390 Uncharacterized protei 23.2 3E+02 0.0064 27.3 7.0 62 513-574 46-110 (196)
368 PRK12305 thrS threonyl-tRNA sy 23.2 73 0.0016 37.0 3.5 28 631-658 204-231 (575)
369 PRK06863 single-stranded DNA-b 22.8 3.8E+02 0.0083 26.1 7.8 32 101-133 54-85 (168)
370 TIGR00638 Mop molybdenum-pteri 22.7 3E+02 0.0066 21.6 6.2 50 74-127 8-58 (69)
371 TIGR00414 serS seryl-tRNA synt 22.6 79 0.0017 35.4 3.5 28 631-658 171-198 (418)
372 cd04486 YhcR_OBF_like YhcR_OBF 22.3 3.3E+02 0.0072 22.7 6.4 50 75-132 2-59 (78)
373 PLN02530 histidine-tRNA ligase 22.3 73 0.0016 36.3 3.2 29 630-658 81-109 (487)
374 cd04497 hPOT1_OB1_like hPOT1_O 22.1 4.4E+02 0.0096 24.4 8.0 74 501-576 3-85 (138)
375 PRK09010 single-stranded DNA-b 21.7 3.4E+02 0.0074 26.7 7.3 55 543-598 56-116 (177)
376 cd05698 S1_Rrp5_repeat_hs6_sc5 21.7 2.3E+02 0.005 22.4 5.3 48 516-569 3-54 (70)
377 PRK09194 prolyl-tRNA synthetas 21.6 82 0.0018 36.7 3.5 28 631-658 45-72 (565)
378 PRK13902 alaS alanyl-tRNA synt 21.6 70 0.0015 39.4 3.0 72 160-244 66-147 (900)
379 PLN02265 probable phenylalanyl 21.0 2.7E+02 0.0059 32.7 7.6 104 160-265 404-526 (597)
380 PRK06293 single-stranded DNA-b 20.4 4.6E+02 0.01 25.4 7.7 33 100-133 44-76 (161)
No 1
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-95 Score=777.31 Aligned_cols=381 Identities=34% Similarity=0.575 Sum_probs=344.0
Q ss_pred cccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhhhhcCCCccEEEEEEEeEe
Q psy8087 55 CEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~~~~l~~es~V~v~G~l~~ 132 (658)
+.+.++... ..++.|+|+|||+++|..|+ ++|+.|||++|.||||+.++.. ..+.+..|+.||+|.|+|+|++
T Consensus 5 ~~i~di~~~----~~~~~V~v~GWV~~~R~~g~-i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~~~~L~~es~v~V~G~v~~ 79 (435)
T COG0017 5 TYIKDIKPH----VGGQEVTVRGWVHNKRDLGK-IIFLVLRDGSGFIQAVVPKNKVYEELFKAKKLTLESSVVVTGIVKA 79 (435)
T ss_pred eeHHhhhcc----CCCcEEEEEEEeeeecccCC-eEEEEEEcCCcEEEEEEECCCCcHHHhhhhcCCCccEEEEEEEEEc
Confidence 345566543 23489999999999998886 9999999999999999986422 2334557999999999999998
Q ss_pred CCCCc-----------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEE
Q psy8087 133 VPEEN-----------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKV 174 (658)
Q Consensus 133 ~p~~~-----------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV 174 (658)
+|... +|+++++ |||++|++..++ .++|+||.++||+||
T Consensus 80 ~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~---rhL~lR~~~~~Av~kirs~i~~a~~eff~~~gF~eV 156 (435)
T COG0017 80 SPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDN---RHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEV 156 (435)
T ss_pred CCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhc---hheeccccchHHHHhHHHHHHHHHHHHHHhCCcEEe
Confidence 88532 2334444 999999998776 599999999999999
Q ss_pred cCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHH
Q psy8087 175 TPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFD 254 (658)
Q Consensus 175 ~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~ 254 (658)
+||+|+++++|||+++|+++||+.++||+||||||||+++.+++|||+|||+||+|+++|+|||.||||+|+||+|++++
T Consensus 157 ~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~ 236 (435)
T COG0017 157 HTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLN 236 (435)
T ss_pred cCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcchhhhHheecceeccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccC---CCCCCC-CCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhh
Q psy8087 255 DLLDKLEDLICDTVDRVMATHGDLVRQMN---PNFEPP-ARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER 330 (658)
Q Consensus 255 ~~m~~~e~li~~i~~~~~~~~~~~~~~~~---~~~~~~-~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~ 330 (658)
|+|+++|+||+++++.+.+++.+.++.++ .++..+ +.||+||||.||+++|++.|.++ ..||+|+.+.+|+
T Consensus 237 d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~~e~-----~~~GdDl~~e~Er 311 (435)
T COG0017 237 DVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEK-----VEWGDDLGTEHER 311 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcCCcc-----cCCCCccCCHHHH
Confidence 99999999999999999998877666553 455544 47899999999999999888664 6899999999999
Q ss_pred hhhcccCC-cEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHH
Q psy8087 331 KMTDQINR-PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTD 409 (658)
Q Consensus 331 ~l~~~~~~-p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~ 409 (658)
+|++.... |+||+|||.+++||||++++++|+++.+|||+++|+|||+|||+|+||++.|.+|++++|+|++.|+|||+
T Consensus 312 ~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld 391 (435)
T COG0017 312 YLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLD 391 (435)
T ss_pred HHHHHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHH
Confidence 99988766 59999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred HhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 410 QRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 410 a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+++||+|||||||||+|||+|++||.+|||||++||..+
T Consensus 392 ~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~ 430 (435)
T COG0017 392 LRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDP 430 (435)
T ss_pred HHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCC
Confidence 999999999999999999999999999999999998643
No 2
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-93 Score=763.53 Aligned_cols=392 Identities=21% Similarity=0.318 Sum_probs=329.8
Q ss_pred cCCCCC-CCCccccccccccCC-----Cc-cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGP-----AG-YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH- 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~-----~~-~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~- 114 (658)
..|||. |++++++.++.+... +. .....|+|+|||+++|.+|| ++|++|.|++|+||++++++... .+.
T Consensus 29 ~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK-~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~ 107 (502)
T COG1190 29 IDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGK-ASFADLQDGSGKIQLYVNKDEVGEEVFEA 107 (502)
T ss_pred CCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCc-eeEEEEecCCceEEEEEeccccchhhHHH
Confidence 346655 555666666543211 11 11234999999999999995 79999999999999999987532 232
Q ss_pred -hhcCCCccEEEEEEEeEeCCCCcc---------------------------ceEecCCCceeEEeecCCccc-------
Q psy8087 115 -ALLLSTESSVQFRGRIEKVPEENM---------------------------KVQLIHPSSYAIVWLGDLKQG------- 159 (658)
Q Consensus 115 -~~~l~~es~V~v~G~l~~~p~~~~---------------------------d~~l~~p~~R~l~lr~~~~~~------- 159 (658)
...++.||+|.|+|.+-.++.|.+ |++++ .||+||..|..++
T Consensus 108 ~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR---~RylDLi~N~e~r~~f~~Rs 184 (502)
T COG1190 108 LFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYR---QRYLDLIVNPESRQTFIKRS 184 (502)
T ss_pred HHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHH---HHHHHHhcCHHHHHHHHHHH
Confidence 346789999999999988887762 33333 3899999886554
Q ss_pred ---CchHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 ---GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ---~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
++||+||+++||+|||||+| +..++|| |.|| |+|.++.++|||||||||||+|++ ||+||||||++||||++
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~l-q~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGi 263 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPML-QPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGI 263 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccc-cccCCCcccccceeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCC
Confidence 69999999999999999999 5778777 5799 789999999999999999999998 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC-
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR- 311 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~- 311 (658)
++ ||||||||||+|+||+||+|+|+++|+||+++++.+.+.....+....+|| +.||+|++|.||++.+ .|++
T Consensus 264 d~-tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~---~~pf~ri~m~dal~e~--~g~~~ 337 (502)
T COG1190 264 DT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDF---SKPFKRITMVDALKEY--LGVDF 337 (502)
T ss_pred cc-ccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEec---CCCeeeeehHHHHHHH--hCccc
Confidence 87 999999999999999999999999999999999999987655565666665 4799999999999753 4432
Q ss_pred -------------------CCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 312 -------------------KPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 312 -------------------~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
......+.+|..++.+||.++++.+.+|+||+|||.++||| ||.|+++|++++|||||++
T Consensus 338 ~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPL-ak~~~~~p~~teRFElfi~ 416 (502)
T COG1190 338 DDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPL-AKRHRSNPGLTERFELFIG 416 (502)
T ss_pred cccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCceeecCccccCcc-ccCCCCCcchhhhheeeec
Confidence 11100144677888999999999999999999999999999 9999999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|. ||||||+|+|||.+|++||++| |.|.++ +++|++||+||||||||+|||||||+|+|||+.||||||+|
T Consensus 417 g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilF 495 (502)
T COG1190 417 GK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILF 495 (502)
T ss_pred cE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecc
Confidence 97 9999999999999999999874 555443 68999999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q psy8087 445 IAKAQLKK 452 (658)
Q Consensus 445 ~~k~~lk~ 452 (658)
|.||+
T Consensus 496 ---P~mr~ 500 (502)
T COG1190 496 ---PAMRP 500 (502)
T ss_pred ---cccCC
Confidence 56664
No 3
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=7.1e-91 Score=763.29 Aligned_cols=372 Identities=27% Similarity=0.458 Sum_probs=330.3
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEEeEeCCC--CccceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGRIEKVPE--ENMKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~l~~~p~--~~~d~~l 142 (658)
..|+.|+|+|||+++|.+|| ++|++|||++|.|||+++++.. ..+ ....|+.||+|.|+|.+..++. +.+++.+
T Consensus 10 ~~g~~v~i~G~v~~~R~~g~-~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~ 88 (428)
T TIGR00458 10 MDGQEVTFMGWVHEIRDLGG-LIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEKAPGGFEIIP 88 (428)
T ss_pred hCCCEEEEEEEEEEEecCCC-cEEEEEEeCCeeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCCCCCcEEEEE
Confidence 56789999999999999997 8999999999999999986542 123 2357999999999999987653 3322221
Q ss_pred cC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC
Q psy8087 143 IH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG 187 (658)
Q Consensus 143 ~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~ 187 (658)
++ | ++||||||++..++ +++|+||.++||+||+||+|+++++|||
T Consensus 89 ~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~ 168 (428)
T TIGR00458 89 TKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGG 168 (428)
T ss_pred eEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCC
Confidence 10 1 24899999765443 6999999999999999999998899999
Q ss_pred ccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 188 STLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 188 ~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
++.|+++|||.++||+||||||||++++ |++||||||||||||+++|+|||||||||||||+|+|++|+|+++|+||++
T Consensus 169 ~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~ 248 (428)
T TIGR00458 169 TELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR 248 (428)
T ss_pred cceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886 799999999999999999889999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCC
Q psy8087 267 TVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346 (658)
Q Consensus 267 i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P 346 (658)
++..+.+++...+..++.++...+.||+||||.||++++++.|++ ..||+++...+|++|++.++.|+||+|||
T Consensus 249 i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g~~------~~~~~~l~~~~E~~l~~~~~~p~fi~d~P 322 (428)
T TIGR00458 249 VFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKGVE------IGWGEDLSTEAEKALGEEMDGLYFITDWP 322 (428)
T ss_pred HHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcCCC------CCCccccchHHHHHHHHHhCCCEEEEeCc
Confidence 999999887665555554443235799999999999999888864 35788999999999999899999999999
Q ss_pred CCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchh
Q psy8087 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 347 ~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
.+++|||+++++++|++++|||||++|. ||+|||+|+||+++|++++++.|++++.|+|||+|++||||||||||||||
T Consensus 323 ~~~~pfy~~~~~~~p~~~~~fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGid 401 (428)
T TIGR00458 323 TEIRPFYTMPDEDNPEISKSFDLMYRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAE 401 (428)
T ss_pred hhcCcccccccCCCCCEEEEEEEEeCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHH
Confidence 9999999999999999999999999995 999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHH
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k 447 (658)
||+|++||.+|||||++||..
T Consensus 402 RL~m~l~g~~~Irdv~~FPr~ 422 (428)
T TIGR00458 402 RFVMFLLGLKNIREAVLFPRD 422 (428)
T ss_pred HHHHHHcCCCchheEEeccCC
Confidence 999999999999999999854
No 4
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=4.9e-91 Score=774.45 Aligned_cols=393 Identities=21% Similarity=0.313 Sum_probs=324.3
Q ss_pred CCCCC-CCCccccccccccC------CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-h-hhh-
Q psy8087 46 LPFPL-FPSPCEVGYITCEG------PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-T-EHA- 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~------~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~-~~~- 115 (658)
.|||. |..++++.++.+.. .....++.|+|+|||+++|.+| +++|++|+|++|.||+|++++... . +..
T Consensus 22 ~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 22 NPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCcCcHHHHHHH
Confidence 34544 45555666664321 1123478899999999999766 589999999999999999876432 1 222
Q ss_pred -hcCCCccEEEEEEEeEeCCCCccc---------------------------eEecCCCceeEEeecCCccc--------
Q psy8087 116 -LLLSTESSVQFRGRIEKVPEENMK---------------------------VQLIHPSSYAIVWLGDLKQG-------- 159 (658)
Q Consensus 116 -~~l~~es~V~v~G~l~~~p~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~-------- 159 (658)
..++.||+|.|+|.+..++.+.++ ++++ .||||||++...+
T Consensus 101 ~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d~e~r~r---~R~Ldl~~n~~~~~~~r~Rs~ 177 (496)
T TIGR00499 101 EYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYR---QRYLDLIVNPDSRQTFLVRSK 177 (496)
T ss_pred HhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCChhhhhh---hhhhhhhcCHHHHHHHHHHHH
Confidence 248999999999999998877533 3333 3999999764322
Q ss_pred --CchHHHhhhCCcEEEcCCccccccCCCC-ccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCC
Q psy8087 160 --GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSR 233 (658)
Q Consensus 160 --~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~ 233 (658)
++||+||.++||+||+||+|++ .++|| ++||.+ ++|+.++||+||||||||+|++ |++||||||||||||+++
T Consensus 178 i~~~iR~fl~~~gF~EVeTP~L~~-~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~ 256 (496)
T TIGR00499 178 IIKAIRRFLDDRGFIEVETPMLQV-IPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVD 256 (496)
T ss_pred HHHHHHHHHHHCcCEEEeCCeeec-CCCCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCC
Confidence 6999999999999999999974 45454 578955 5699999999999999999987 799999999999999998
Q ss_pred CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHH-HcCCCC
Q psy8087 234 TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLR-KHEIRK 312 (658)
Q Consensus 234 ~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~-~~g~~~ 312 (658)
+ |||||||||||||+|+||+|||+++|+||++++..+.+++...+....+++ +.||+|+||.||++++. ..|++.
T Consensus 257 ~-rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~---~~pf~rit~~eai~~~~~~~g~~~ 332 (496)
T TIGR00499 257 T-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDF---KKPFKRITMVEAIKKYDMETGIDF 332 (496)
T ss_pred C-cccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccC---CCCceEEEHHHHHHHHHHhcCCCc
Confidence 6 999999999999999999999999999999999999877654444333343 47999999999999774 356543
Q ss_pred CCC-------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCC
Q psy8087 313 PDN-------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPN 373 (658)
Q Consensus 313 ~~~-------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G 373 (658)
.+. ..++||..+..++++++++.+.+|+||+|||.+++|| |+.+++||++++|||||++|
T Consensus 333 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l~~P~fv~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G 411 (496)
T TIGR00499 333 DDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIAG 411 (496)
T ss_pred hhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhccCCCEEEECCchhcCcc-cccCCCCCCeEEEEEEEeCC
Confidence 211 1235567778889999999999999999999999999 89999999999999999999
Q ss_pred cceeeeceeccCCHHHHHHHHHH------cCCCCCCC--cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 374 VGEVIGGSMRIWDPEELLAGYKR------EGIDPAPY--YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 374 ~~Ei~~G~~r~~d~~~~~~~~~~------~g~~~~~~--~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
+ ||||||+|+|||.+|++||++ .|.+++.+ +|||+|++||||||||||||||||+|+|||.+||||||+||
T Consensus 412 ~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP 490 (496)
T TIGR00499 412 K-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490 (496)
T ss_pred e-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCC
Confidence 7 999999999999999999874 47676664 89999999999999999999999999999999999999995
Q ss_pred HHhhhhh
Q psy8087 446 AKAQLKK 452 (658)
Q Consensus 446 ~k~~lk~ 452 (658)
.+|+
T Consensus 491 ---~~~~ 494 (496)
T TIGR00499 491 ---AMRP 494 (496)
T ss_pred ---CCCC
Confidence 5554
No 5
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-90 Score=762.71 Aligned_cols=383 Identities=27% Similarity=0.464 Sum_probs=332.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-h-hhhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-E-HALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~ 131 (658)
++.+.++.. ..+|+.|+|+|||+++|.+|| ++|++|||++|.||||++.+.... + ....|+.||+|.|+|.+.
T Consensus 4 ~~~~~~l~~----~~~g~~V~i~GrV~~~R~~gk-~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~ 78 (437)
T PRK05159 4 RHLTSELTP----ELDGEEVTLAGWVHEIRDLGG-IAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVK 78 (437)
T ss_pred eeEhhhCCh----hhCCCEEEEEEEeEeeecCCC-eEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEE
Confidence 344556633 357899999999999999985 899999999999999998764322 2 235799999999999999
Q ss_pred eCCC--CccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEE
Q psy8087 132 KVPE--ENMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKV 174 (658)
Q Consensus 132 ~~p~--~~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV 174 (658)
+++. +.+++.+++ | +.||||||++..++ ++||+||.++||+||
T Consensus 79 ~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV 158 (437)
T PRK05159 79 ANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEI 158 (437)
T ss_pred cCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 8775 332222110 1 24999998765444 699999999999999
Q ss_pred cCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC-
Q psy8087 175 TPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT- 252 (658)
Q Consensus 175 ~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d- 252 (658)
+||+|+.+++|||++.|+++|||.++||+||||||||++++ |++||||||||||||+++++|||||||||||||+|+|
T Consensus 159 ~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~ 238 (437)
T PRK05159 159 FTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDD 238 (437)
T ss_pred eCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeeccc
Confidence 99999888899999999999999999999999999999997 6999999999999999998899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 253 FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 253 ~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
|+++|+++|+||+++++.+.+++...+..++.++...+.||+||||.||++++++.|++ ..||++++..+|+++
T Consensus 239 ~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~~~------~~~~~~~~~~~e~~l 312 (437)
T PRK05159 239 HEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKGNE------ISWGDDLDTEGERLL 312 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcCCC------CCCCCCCCcHHHHHH
Confidence 99999999999999999998876555554554433345799999999999999887753 356788999999988
Q ss_pred hcccC----C-cEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcch
Q psy8087 333 TDQIN----R-PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWY 407 (658)
Q Consensus 333 ~~~~~----~-p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~y 407 (658)
...+. . |+||+|||.+++||||+.++++|++++|||||++|+ ||+|||+|+|||++|+++|+++|++++.|+||
T Consensus 313 ~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~y 391 (437)
T PRK05159 313 GEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFY 391 (437)
T ss_pred HHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHH
Confidence 76553 2 899999999999999999999999999999999997 99999999999999999999999999899999
Q ss_pred HHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 408 TDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 408 l~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+|++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 392 l~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~ 432 (437)
T PRK05159 392 LEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDR 432 (437)
T ss_pred HHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCC
Confidence 99999999999999999999999999999999999998543
No 6
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-89 Score=760.40 Aligned_cols=393 Identities=21% Similarity=0.313 Sum_probs=320.0
Q ss_pred CCCC-CCCccccccccccCC----C--ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh--h
Q psy8087 47 PFPL-FPSPCEVGYITCEGP----A--GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH--A 115 (658)
Q Consensus 47 ~~~~-~~~~~~~~~~~~~~~----~--~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~--~ 115 (658)
|||. |..++++.++.+... . ...+++|+|+|||+++|.+|| ++|++|+|++|.||||++++... .+. .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk-~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~ 113 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQF 113 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCC-cEEEEEEeCCccEEEEEECCccchhhHHHHH
Confidence 6765 666777777643221 1 134678999999999999986 79999999999999999865432 232 3
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~ 161 (658)
..++.||+|.|+|.+.+++.+.+++.++. | .+||||||++...+ ++
T Consensus 114 ~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~ 193 (505)
T PRK12445 114 KKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAA 193 (505)
T ss_pred hcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 46999999999999998887763333221 1 13999999765433 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|+ +.++|| +.|| ++++|+.++||+||||||||+|++ |++||||||||||||++ +.||
T Consensus 194 iR~f~~~~gFiEVeTPiL~-~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH 271 (505)
T PRK12445 194 IRQFMVARGFMEVETPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRH 271 (505)
T ss_pred HHHHHHHCCCEEeeCCeeE-ecCCCCcccceecccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCC-CCCc
Confidence 9999999999999999996 456555 3588 368999999999999999999887 79999999999999999 6799
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHH----------
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRK---------- 307 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~---------- 307 (658)
|||||||||||+|+||+|||+++|+||++++..+.+.+...+....++ ++.||+|+||.||++.+..
T Consensus 272 ~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~---~~~pf~rit~~eai~~~~~~~~~~~~~~~ 348 (505)
T PRK12445 272 NPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD---FGKPFEKLTMREAIKKYRPETDMADLDNF 348 (505)
T ss_pred CcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCceecc---CCCCceEEEHHHHHHHHhCCCCccccCCH
Confidence 999999999999999999999999999999999887654333222223 3479999999999998732
Q ss_pred ---------cCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceee
Q psy8087 308 ---------HEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI 378 (658)
Q Consensus 308 ---------~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~ 378 (658)
.|++.+ ..+.+|..++..++.++++.+.+|+||+|||.+++||| +.+++||++++|||||++|+ |||
T Consensus 349 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~spla-k~~~~~p~~~~rFeL~i~G~-Ei~ 424 (505)
T PRK12445 349 DAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLA-RRNDVNPEITDRFEFFIGGR-EIG 424 (505)
T ss_pred HHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCccc-ccCCCCCCceEEEEEEeCCE-EEc
Confidence 111111 12344455667778888888999999999999999996 77889999999999999997 999
Q ss_pred eceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhhh
Q psy8087 379 GGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 379 ~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|||+|+|||++|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||..||||||+|| .+
T Consensus 425 ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP---~~ 501 (505)
T PRK12445 425 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP---AM 501 (505)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCC---CC
Confidence 9999999999999999864 666554 379999999999999999999999999999999999999995 55
Q ss_pred hh
Q psy8087 451 KK 452 (658)
Q Consensus 451 k~ 452 (658)
|+
T Consensus 502 ~~ 503 (505)
T PRK12445 502 RP 503 (505)
T ss_pred CC
Confidence 54
No 7
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=3.3e-89 Score=762.84 Aligned_cols=395 Identities=20% Similarity=0.303 Sum_probs=328.4
Q ss_pred cCCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch----hhh
Q psy8087 45 LLPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ----TEH 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~----~~~ 114 (658)
..|||. |..++++.++.... +....+++|+|+|||+++|.+| +++|++|+|++|.||||++.+... .|.
T Consensus 77 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~ 155 (553)
T PLN02502 77 VEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFE 155 (553)
T ss_pred CCCCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHH
Confidence 368987 78888888885432 2334678899999999999999 589999999999999999866431 243
Q ss_pred h--hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc---------
Q psy8087 115 A--LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 115 ~--~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~--------- 159 (658)
. ..|+.||+|.|+|.+.+++.+.+++.++. | ..|||||+.+...+
T Consensus 156 ~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i 235 (553)
T PLN02502 156 KLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKI 235 (553)
T ss_pred HHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHH
Confidence 2 25999999999999999887764333221 1 14999997654333
Q ss_pred -CchHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCC
Q psy8087 160 -GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRT 234 (658)
Q Consensus 160 -~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~ 234 (658)
++||+||.++||+||+||+|++ .++|| +.||. +++|++++||+||||||||+|++ |++||||||||||||++++
T Consensus 236 ~~~iR~fl~~~gF~EVeTPiL~~-~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~ 314 (553)
T PLN02502 236 ISYIRRFLDDRGFLEVETPMLNM-IAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIST 314 (553)
T ss_pred HHHHHHHHHHCCCEEEECCeeec-cCCCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCC
Confidence 6999999999999999999975 45555 46894 48999999999999999999887 8999999999999999987
Q ss_pred ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC
Q psy8087 235 RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314 (658)
Q Consensus 235 ~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~ 314 (658)
|||||||||||||+|+||+|||+++|+||++++..+.+++...+....+++ ..||+|+||.||++.+ .|++.+.
T Consensus 315 -rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~---~~p~~rit~~e~l~~~--~g~~~~~ 388 (553)
T PLN02502 315 -RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDF---TPPFRRISMISLVEEA--TGIDFPA 388 (553)
T ss_pred -ccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccC---CCCceeccHHHHHHHH--hCCCCCc
Confidence 999999999999999999999999999999999999887654443333343 4799999999999864 3443221
Q ss_pred -C---------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 315 -N---------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 315 -~---------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
. ...+||..++.++++++++++.+|+||+|||.+++|| ++.+++||++++|||||++
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l~~PtFV~dyP~~~spl-ak~~~~~p~~~erFELfi~ 467 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPL-AKPHRSKPGLTERFELFIN 467 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCccccCcc-cccCCCCCCeEEEEEEEeC
Confidence 0 1246777888899999999999999999999999999 6789999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|+ ||||||+|+|||.+|++||+++ +.+.+. +++||+|++||||||||||||||||+|+|||..||||||+|
T Consensus 468 G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~F 546 (553)
T PLN02502 468 GR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAF 546 (553)
T ss_pred Ce-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeecC
Confidence 97 9999999999999999999875 222211 47799999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q psy8087 445 IAKAQLKK 452 (658)
Q Consensus 445 ~~k~~lk~ 452 (658)
|.||+
T Consensus 547 ---P~~k~ 551 (553)
T PLN02502 547 ---PAMKP 551 (553)
T ss_pred ---CcCCC
Confidence 56664
No 8
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=6.3e-89 Score=751.45 Aligned_cols=378 Identities=33% Similarity=0.534 Sum_probs=325.9
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCC--eEEEEEEecccchh-h-hhhcCCCccEEEEEEEeEeCCCCc--cce
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGS--GFIQCVLADILCQT-E-HALLLSTESSVQFRGRIEKVPEEN--MKV 140 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~--~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~~~p~~~--~d~ 140 (658)
...|++|+|+|||+++|.+| +++|++|||++ |.||||++++.... + ....|+.||+|.|+|.+.++|.+. +|+
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El 91 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVEL 91 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCCCCCCCEEE
Confidence 35689999999999999555 69999999999 99999998763221 2 235799999999999998765322 222
Q ss_pred EecC------------C------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC
Q psy8087 141 QLIH------------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG 187 (658)
Q Consensus 141 ~l~~------------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~ 187 (658)
.+++ | +.||||+|++..++ +++|+||.++||+||+||+|+++++||+
T Consensus 92 ~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~ 171 (453)
T TIGR00457 92 QVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGA 171 (453)
T ss_pred EEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCC
Confidence 1110 0 25999999876544 6999999999999999999998899999
Q ss_pred ccceeec---------cCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHH
Q psy8087 188 STLFSLN---------FFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLD 258 (658)
Q Consensus 188 ~~~F~~~---------~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~ 258 (658)
+++|.+. |||.++||+||||||||++++|++||||||||||||+++++|||||||||||||+|+|++|+|+
T Consensus 172 ~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~ 251 (453)
T TIGR00457 172 GELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQ 251 (453)
T ss_pred CCceEecccccccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHH
Confidence 9999776 8999999999999999988779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCCC---------CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchh
Q psy8087 259 KLEDLICDTVDRVMATHGDLVRQMNPNFE---------PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPE 329 (658)
Q Consensus 259 ~~e~li~~i~~~~~~~~~~~~~~~~~~~~---------~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e 329 (658)
++|+||++++..+.+.+...+..++.++. ....||+||||.||+++|++.+..... ...||.+|...+|
T Consensus 252 ~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e 329 (453)
T TIGR00457 252 LAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEY--EDFWGDDLQTEHE 329 (453)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcC--CCCCCCCCCcHHH
Confidence 99999999999998776544333332221 123589999999999999887643221 2468999999999
Q ss_pred hhhhccc-CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchH
Q psy8087 330 RKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408 (658)
Q Consensus 330 ~~l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl 408 (658)
++|.+.+ ..|+||||||.+++|||++.+ +|+++++||||+++|+|||+|||+|+|+++.+.+++++.|+|++.|+|||
T Consensus 330 ~~L~~~~~~~p~fIt~~P~~~~pfy~~~~-~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl 408 (453)
T TIGR00457 330 RFLAEEYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYL 408 (453)
T ss_pred HHHHHHhCCCCEEEECCCcccChhhcccC-CCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9988774 779999999999999998887 89999999999999988999999999999999999999999999999999
Q ss_pred HHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 409 ~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++++||||||||||||||||+|+|||.+|||||++||..+
T Consensus 409 ~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~ 448 (453)
T TIGR00457 409 DLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTP 448 (453)
T ss_pred HHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCC
Confidence 9999999999999999999999999999999999998543
No 9
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-88 Score=755.33 Aligned_cols=390 Identities=22% Similarity=0.330 Sum_probs=317.7
Q ss_pred CCCCC-CCCccccccccccCCC------ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-h
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPA------GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-A 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~------~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~ 115 (658)
.|||. |..+++++++...... ...++.|+|+|||+++|.+| +++|++|||++|.||||++++... .+. .
T Consensus 23 ~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 23 DPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCcCCHHHHHHH
Confidence 45554 5566677777543111 11236799999999999999 599999999999999999876432 232 2
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~ 161 (658)
..|+.||+|.|+|.+.+++.+.+++.+++ | +.||||||++...+ ++
T Consensus 102 ~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~ 181 (491)
T PRK00484 102 KKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIISA 181 (491)
T ss_pred hcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHHH
Confidence 46999999999999999887763332211 0 24999998654322 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|+ +.++|| +++| +++||+.++||+||||||||+|++ |++||||||||||||++++ ||
T Consensus 182 iR~f~~~~gF~EVeTPiL~-~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~-rH 259 (491)
T PRK00484 182 IRRFLDNRGFLEVETPMLQ-PIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDT-RH 259 (491)
T ss_pred HHHHHHHCCCEEEECCcee-ccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCC-Cc
Confidence 9999999999999999997 446555 4789 468999999999999999999987 8999999999999999986 99
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC---
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD--- 314 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~--- 314 (658)
|||||||||||+|+||+|||+++|+||++++..+.++....+....++ ++.||+||||.||++.+ .|++..+
T Consensus 260 ~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~---~~~pf~rity~eai~~~--~g~~~~~~~~ 334 (491)
T PRK00484 260 NPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEID---FGPPFKRLTMVDAIKEY--TGVDFDDMTD 334 (491)
T ss_pred CCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeec---CCCCceEEEHHHHHHHH--hCCCcccCCH
Confidence 999999999999999999999999999999999986543222221223 35799999999999976 3433210
Q ss_pred --------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeec
Q psy8087 315 --------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380 (658)
Q Consensus 315 --------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G 380 (658)
...+++|..++.+++.++++.+.+|+||+|||.+++|| ++.+++||++++|||||++|+ |||||
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dyP~~~~pf-~k~~~~~~~~~~rFdL~i~G~-Ei~ng 412 (491)
T PRK00484 335 EEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPL-AKRHREDPGLTERFELFIGGR-EIANA 412 (491)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcEEEECCChHHhhh-hccCCCCCCeEEEEEEEECCE-EEecc
Confidence 01234666777888899999999999999999999999 578889999999999999998 99999
Q ss_pred eeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 381 SMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 381 ~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
|+|+|||.+|++||+++ |.++.. ++|||+|++||||||||||||||||+|++||.+||||||+||
T Consensus 413 y~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP 485 (491)
T PRK00484 413 FSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485 (491)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCC
Confidence 99999999999999864 433332 369999999999999999999999999999999999999995
No 10
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=3.4e-88 Score=752.03 Aligned_cols=378 Identities=28% Similarity=0.476 Sum_probs=327.8
Q ss_pred ccCCcEEEEeEEeecceecCC-CeEEEEEEcCCe--EEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCCCC------
Q psy8087 67 GYIITNINIPAIPGPPAIPGK-GLMFVTLRDGSG--FIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVPEE------ 136 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk-~l~Fi~LrD~~~--~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p~~------ 136 (658)
...|+.|+|+|||+++|.+|+ +++|++|+|++| .+|||+++.. ..+ ...+++.|++|.|+|.|...|.+
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~-~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g 156 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSI-ENYEKLLKCGVGCCFRFTGKLIISPVQNENKKG 156 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCch-HHHHHHhcCCCccEEEEEEEEEcCCccccCcCC
Confidence 357899999999999999886 599999999998 4999997542 222 23579999999999999876533
Q ss_pred ----ccceEec--------------C----C------------CceeEEeecCCccc---------CchHHHhhhCCcEE
Q psy8087 137 ----NMKVQLI--------------H----P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAK 173 (658)
Q Consensus 137 ----~~d~~l~--------------~----p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~E 173 (658)
.+|+.+. + | +.|||++|++..++ .++|+||.++||+|
T Consensus 157 ~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~e 236 (586)
T PTZ00425 157 LLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLY 236 (586)
T ss_pred CCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1444431 1 1 35899999987665 59999999999999
Q ss_pred EcCCccccccCCCCccceee------------------------------------------------------------
Q psy8087 174 VTPPTLVQTQVEGGSTLFSL------------------------------------------------------------ 193 (658)
Q Consensus 174 V~TPiL~~~~~eG~~~~F~~------------------------------------------------------------ 193 (658)
|+||+|++++||||++.|.+
T Consensus 237 I~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (586)
T PTZ00425 237 IHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316 (586)
T ss_pred eeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998854
Q ss_pred ---ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 194 ---NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 194 ---~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
+|||+++||+||||||||++++|++|||+||||||||+++|+||+|||||||+||+|+|++|+|+++|+||++++..
T Consensus 317 ~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~ 396 (586)
T PTZ00425 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGY 396 (586)
T ss_pred ccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCC----CC-----CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc-CCcE
Q psy8087 271 VMATHGDLVRQMNP----NF-----EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPI 340 (658)
Q Consensus 271 ~~~~~~~~~~~~~~----~~-----~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~ 340 (658)
+.+.+...+..++. ++ ..+..||+||||.||+++|++.+... .....||.++...+|++|++++ +.|+
T Consensus 397 vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~--~~~~~~G~dL~~e~Er~L~~~~~~~Pv 474 (586)
T PTZ00425 397 VLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSF--EVPVKWGMDLQSEHERFVAEQIFKKPV 474 (586)
T ss_pred HhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhc--CCCCCcccccchHHHHHHHHHhcCCcE
Confidence 98776544433321 11 01246999999999999998765221 1236899999999999999985 7899
Q ss_pred EEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccc
Q psy8087 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGG 420 (658)
Q Consensus 341 fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG 420 (658)
||+|||.+++||||+.++++ .++++|||+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||||||||
T Consensus 475 FItdyP~~~kPFY~~~~~d~-~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgG 553 (586)
T PTZ00425 475 IVYNYPKDLKAFYMKLNEDQ-KTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAG 553 (586)
T ss_pred EEECCccccCccccCcCCCC-CeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCce
Confidence 99999999999999887555 78899999999989999999999999999999999999999999999999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
||||||||+|+|||.+|||||++||..+
T Consensus 554 fGLGiERLvm~ltGl~nIRDvi~FPR~~ 581 (586)
T PTZ00425 554 FGLGFERLIMLVTGVDNIKDTIPFPRYP 581 (586)
T ss_pred EEEcHHHHHHHHcCCCchheEEECcCCC
Confidence 9999999999999999999999999654
No 11
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=5.2e-88 Score=752.45 Aligned_cols=388 Identities=29% Similarity=0.470 Sum_probs=328.5
Q ss_pred ccccccc--cCCCccCCcEEEEeEEeecceecCC-CeEEEEEEcCC--eEEEEEEecccchhhhhhcCCCccEEEEEEEe
Q psy8087 56 EVGYITC--EGPAGYIITNINIPAIPGPPAIPGK-GLMFVTLRDGS--GFIQCVLADILCQTEHALLLSTESSVQFRGRI 130 (658)
Q Consensus 56 ~~~~~~~--~~~~~~~~~~v~~~Grv~~~r~~gk-~l~Fi~LrD~~--~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l 130 (658)
.+.+++. .+.....|+.|+|+|||+++|.+|| +++|++|||++ |.||||+.++... . ...|+.||+|.|+|.|
T Consensus 34 ~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~~-~-~~~L~~ES~V~V~G~V 111 (572)
T PLN02221 34 LIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYD-L-STLVATGTCVTVDGVL 111 (572)
T ss_pred EHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchhh-H-HhcCCCceEEEEEEEE
Confidence 5566641 2345577899999999999999997 59999999999 7899999765211 1 1258999999999999
Q ss_pred EeCCCC-----ccceEecC------------C------------CceeEEeecCCccc---------CchHHHhhhCCcE
Q psy8087 131 EKVPEE-----NMKVQLIH------------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIA 172 (658)
Q Consensus 131 ~~~p~~-----~~d~~l~~------------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~ 172 (658)
+..|.. .+|+.+++ | +.|||++|++..++ .+||+||.++||+
T Consensus 112 ~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFi 191 (572)
T PLN02221 112 KVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFL 191 (572)
T ss_pred EeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 987741 23332221 1 13566666665554 5999999999999
Q ss_pred EEcCCccccccCCCCccceee-----------------------------------------------------------
Q psy8087 173 KVTPPTLVQTQVEGGSTLFSL----------------------------------------------------------- 193 (658)
Q Consensus 173 EV~TPiL~~~~~eG~~~~F~~----------------------------------------------------------- 193 (658)
||+||+|++++||||++.|++
T Consensus 192 EI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (572)
T PLN02221 192 YIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAEL 271 (572)
T ss_pred EEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhh
Confidence 999999999999999998865
Q ss_pred -------------------------------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceee
Q psy8087 194 -------------------------------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYT 242 (658)
Q Consensus 194 -------------------------------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt 242 (658)
+|||+++||+||||||||++++|++|||+||||||||+++|+|||||||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFt 351 (572)
T PLN02221 272 KIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFW 351 (572)
T ss_pred hhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCccccccc
Confidence 6999999999999999999888999999999999999999999999999
Q ss_pred eeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC--------C-CCCCCcceeeHHHHHHHHHHc---CC
Q psy8087 243 HVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF--------E-PPARPFLRMNYADAIEYLRKH---EI 310 (658)
Q Consensus 243 ~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~--------~-~~~~pf~rit~~ea~~~l~~~---g~ 310 (658)
|||+||+|+|++|+|+++|+||+++++.+.+++.+.+..++.++ . .++.||+||||.||+++|++. |.
T Consensus 352 mlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~ 431 (572)
T PLN02221 352 MVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGK 431 (572)
T ss_pred ceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999887654433221111 0 135699999999999999874 43
Q ss_pred CCCCCCCcccCCCCCCchhhhhhcc-cCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHH
Q psy8087 311 RKPDNTEYEFGEDIPEMPERKMTDQ-INRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEE 389 (658)
Q Consensus 311 ~~~~~~~~~~g~~l~~~~e~~l~~~-~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~ 389 (658)
+.. ....||.++...+|++|++. +..|+||+|||.+++||||+. ++|+.++++||||++|+|||++|++|+|+++.
T Consensus 432 ~~~--~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~-~~d~~~~~~fDLl~~g~~El~~g~~R~~r~e~ 508 (572)
T PLN02221 432 EFD--NNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRL-NDDEKTVAAMDVLVPKVGELIGGSQREERYDV 508 (572)
T ss_pred CCC--CCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccC-CCCCceEEEEEEecCCceEECCHHHHHHHHHH
Confidence 221 23579999999999999998 579999999999999999765 45777889999999998999999999999999
Q ss_pred HHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 390 LLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 390 ~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+.++++++|++++.|+|||++++||||||||||||||||+|+++|..|||||++||..+
T Consensus 509 l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~ 567 (572)
T PLN02221 509 IKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYP 567 (572)
T ss_pred HHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999998643
No 12
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=8.5e-88 Score=750.93 Aligned_cols=393 Identities=28% Similarity=0.460 Sum_probs=333.6
Q ss_pred CCCccccccccc--cCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCe--EEEEEEecccchhhhh-h--cCCCccE
Q psy8087 51 FPSPCEVGYITC--EGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSG--FIQCVLADILCQTEHA-L--LLSTESS 123 (658)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~--~iQvv~~~~~~~~~~~-~--~l~~es~ 123 (658)
++....+.++.. .......|++|+|+|||+++|.+| +++|++|+|+++ .||||++++.. .+.. . .|+.||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~-~~~~l~~~~l~~gs~ 163 (565)
T PLN02603 86 FRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAE-GYDQVESGLITTGAS 163 (565)
T ss_pred cCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHH-HHHHHhhcCCCCCCE
Confidence 334445566652 123456799999999999999776 599999999997 59999976532 2322 2 4999999
Q ss_pred EEEEEEeEeCCCCc--cceEecC-----------C------------CceeEEeecCCccc---------CchHHHhhhC
Q psy8087 124 VQFRGRIEKVPEEN--MKVQLIH-----------P------------SSYAIVWLGDLKQG---------GYPPEVSLAN 169 (658)
Q Consensus 124 V~v~G~l~~~p~~~--~d~~l~~-----------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~ 169 (658)
|.|+|.+..+|.+. +|+.++. | ..+||++|++..++ +++|+||.++
T Consensus 164 V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~~ 243 (565)
T PLN02603 164 VLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 243 (565)
T ss_pred EEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999888665 4443321 1 13688999876544 5999999999
Q ss_pred CcEEEcCCccccccCCCCccceee------------------------------ccCCcceeeccCHHHHHHHhcccCCc
Q psy8087 170 GIAKVTPPTLVQTQVEGGSTLFSL------------------------------NFFGEPAYLTQSSQLYLETCLPALGD 219 (658)
Q Consensus 170 gF~EV~TPiL~~~~~eG~~~~F~~------------------------------~~~~~~~~L~~Spqlylk~li~g~~r 219 (658)
||+||+||+|++++||||++.|.+ +|||+++||+||||||||+++.|++|
T Consensus 244 gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~r 323 (565)
T PLN02603 244 GFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSD 323 (565)
T ss_pred CCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcccc
Confidence 999999999999999999997733 58999999999999999998889999
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC---------CCCC
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF---------EPPA 290 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~---------~~~~ 290 (658)
||+||||||||+++|+||||||||||+||+|+|++|+|+++|++|+++++.+.+++.+.++.++... ..+.
T Consensus 324 Vy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~ 403 (565)
T PLN02603 324 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVE 403 (565)
T ss_pred eEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988755443332211 0134
Q ss_pred CCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEE
Q psy8087 291 RPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVD 368 (658)
Q Consensus 291 ~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fd 368 (658)
.||+||||.||+++|++.+.+.. ...+||.+|..++|++|.+.+ ++|+||+|||.+++||||+.+ +|+.++++||
T Consensus 404 ~~f~rity~EAi~iL~~~~~~~~--~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~-~d~~~v~~fD 480 (565)
T PLN02603 404 KNFVQLSYTDAIELLLKAKKKFE--FPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMREN-DDGKTVAAMD 480 (565)
T ss_pred CCCCCCCHHHHHHHHHHhccccC--CCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccC-CCCCeeEEEE
Confidence 69999999999999988754422 346899999999999999876 379999999999999997655 5688999999
Q ss_pred EEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 369 VLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 369 L~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||+|||||||||||||+|+|||.+|||||++||..+
T Consensus 481 Ll~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~ 560 (565)
T PLN02603 481 MLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVP 560 (565)
T ss_pred EEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
No 13
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=3.7e-87 Score=746.65 Aligned_cols=360 Identities=24% Similarity=0.397 Sum_probs=311.7
Q ss_pred ecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC----CccceEecC------------C
Q psy8087 84 IPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE----ENMKVQLIH------------P 145 (658)
Q Consensus 84 ~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~----~~~d~~l~~------------p 145 (658)
|..|+++||+|||++|. ||||++++.... ...|+.|++|.|+|.|+..+. +.+|+.+++ |
T Consensus 130 r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~--~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~P 207 (633)
T PLN02532 130 PPPPSVAYLLISDGSCVASLQVVVDSALAPL--TQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYP 207 (633)
T ss_pred ccCCCcEEEEEECCCCccceEEEEeCCcccH--hhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCc
Confidence 34456999999999998 999998664321 147899999999999998732 223332211 1
Q ss_pred ------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccc--------------
Q psy8087 146 ------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTL-------------- 190 (658)
Q Consensus 146 ------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~-------------- 190 (658)
++||||||++..++ .+||+||.++||+||+||+|++++||||++.
T Consensus 208 i~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~ 287 (633)
T PLN02532 208 LSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKE 287 (633)
T ss_pred cccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceecccccccccc
Confidence 35999999987766 5999999999999999999999999999976
Q ss_pred ---------------------------------------------------------------------------eeecc
Q psy8087 191 ---------------------------------------------------------------------------FSLNF 195 (658)
Q Consensus 191 ---------------------------------------------------------------------------F~~~~ 195 (658)
|+++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dy 367 (633)
T PLN02532 288 EKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDF 367 (633)
T ss_pred ccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55679
Q ss_pred CCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy8087 196 FGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH 275 (658)
Q Consensus 196 ~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~ 275 (658)
||+++||+||||||||++++||+|||+||||||||+++|+||||||||||+||+|+||+|+|+++|+||+++++.+.+++
T Consensus 368 Fg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~ 447 (633)
T PLN02532 368 FSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447 (633)
T ss_pred CCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccCCCC---------CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcc-cCCcEEEEeC
Q psy8087 276 GDLVRQMNPNF---------EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ-INRPIMLCRF 345 (658)
Q Consensus 276 ~~~~~~~~~~~---------~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~-~~~p~fi~~~ 345 (658)
...++.++.++ ..++.||+||||.||+++|++.+.. +......||.+|...+|++|.+. ++.|+||+||
T Consensus 448 ~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~-~~e~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdy 526 (633)
T PLN02532 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDK-KFETKPEWGIALTTEHLSYLADEIYKKPVIIYNY 526 (633)
T ss_pred hhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCC-CcccccccCCccChHHHHHHHHHHcCCCEEEECC
Confidence 55444333211 1245799999999999999876421 11124679999999999999987 6899999999
Q ss_pred CCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecch
Q psy8087 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGL 425 (658)
Q Consensus 346 P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGi 425 (658)
|.+++||||+.+ +|+.++++|||+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||+||||||||||
T Consensus 527 P~~ikPFY~~~~-~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ 605 (633)
T PLN02532 527 PKELKPFYVRLN-DDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGF 605 (633)
T ss_pred ChhhchhhCCcC-CCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhH
Confidence 999999999776 5678999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccCcchhhHHHHH
Q psy8087 426 ERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 426 dRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||+|||||.+|||||++||..
T Consensus 606 ERLvm~ltGl~nIRDvi~FPR~ 627 (633)
T PLN02532 606 ELMVLFATGLPDVRDAIPFPRS 627 (633)
T ss_pred HHHHHHHhCCCchheEeecCCC
Confidence 9999999999999999999854
No 14
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.5e-87 Score=739.62 Aligned_cols=377 Identities=33% Similarity=0.532 Sum_probs=328.2
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhh-hhhcCCCccEEEEEEEeEeCCCC--ccceEe
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTE-HALLLSTESSVQFRGRIEKVPEE--NMKVQL 142 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~-~~~~l~~es~V~v~G~l~~~p~~--~~d~~l 142 (658)
...|++|+|+|||+++|.+| +++|++|||++|.+|+++..+.. ..+ ....|+.||+|.|+|.+.+++.+ .+++.+
T Consensus 13 ~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~ 91 (450)
T PRK03932 13 KYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQA 91 (450)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEE
Confidence 35689999999999999986 58999999999999998875532 223 23579999999999999988753 222221
Q ss_pred cC-----------C------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccc
Q psy8087 143 IH-----------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTL 190 (658)
Q Consensus 143 ~~-----------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~ 190 (658)
.+ | +.||||+|++..++ +++|+||.++||+||+||+|+++++||++++
T Consensus 92 ~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~ 171 (450)
T PRK03932 92 TKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGEL 171 (450)
T ss_pred EEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCc
Confidence 10 0 35999999986544 6999999999999999999998899999999
Q ss_pred eee---------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHH
Q psy8087 191 FSL---------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLE 261 (658)
Q Consensus 191 F~~---------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e 261 (658)
|.+ +|||.++||+||||||||+++.|++||||||||||||+++++|||||||||||||+|+|++|+|+++|
T Consensus 172 F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e 251 (450)
T PRK03932 172 FRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAE 251 (450)
T ss_pred eEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHH
Confidence 977 89999999999999999998779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCCC-----C---C-CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 262 DLICDTVDRVMATHGDLVRQMNPN-----F---E-PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 262 ~li~~i~~~~~~~~~~~~~~~~~~-----~---~-~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
+||++++..+.+++...++.++.. + . .++.||++|||.||++++++.|.+... ...||.+++..+|+++
T Consensus 252 ~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l 329 (450)
T PRK03932 252 EMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEF--PVEWGDDLGSEHERYL 329 (450)
T ss_pred HHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcCC--CCCcccccChHHHHHH
Confidence 999999999987664433322221 0 0 134699999999999999888765432 2478999999999999
Q ss_pred hc-ccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHh
Q psy8087 333 TD-QINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQR 411 (658)
Q Consensus 333 ~~-~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~ 411 (658)
.+ +++.|+||+|||.+++|||++.++++ ++++||||++||+|||++|++|+|+++.+.+++++.|++++.++||++++
T Consensus 330 ~~~~~~~pvfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~ 408 (450)
T PRK03932 330 AEEHFKKPVFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLR 408 (450)
T ss_pred HHHhcCCcEEEECCCcccCcccCcCCCCC-CEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88 88999999999999999998888877 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 412 KYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 412 ~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+||||||||||||||||+|+++|.+|||||++||..
T Consensus 409 ~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~ 444 (450)
T PRK03932 409 RYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRT 444 (450)
T ss_pred HcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCC
Confidence 999999999999999999999999999999999854
No 15
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.4e-87 Score=747.03 Aligned_cols=395 Identities=18% Similarity=0.242 Sum_probs=322.2
Q ss_pred CCCCCCCccccccccccCCC-----ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--h-hhh--hh
Q psy8087 47 PFPLFPSPCEVGYITCEGPA-----GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--Q-TEH--AL 116 (658)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~-~~~--~~ 116 (658)
.|-.|..++++.++.+.... ....+.|+|+|||+++|.+|| ++|++|||++|.||||++++.. . .+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk-~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~ 157 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGK-IIFVTIRSNGNELQVVGQVGEHFTREDLKKLKV 157 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCC-eEEEEEEECCceEEEEEECCccCCHHHHHHHHh
Confidence 56668888888887543221 122456999999999999996 8999999999999999987653 1 232 23
Q ss_pred cCCCccEEEEEEEeEeCCCCc---------------------------------cceEecCCCceeEEeecCCccc----
Q psy8087 117 LLSTESSVQFRGRIEKVPEEN---------------------------------MKVQLIHPSSYAIVWLGDLKQG---- 159 (658)
Q Consensus 117 ~l~~es~V~v~G~l~~~p~~~---------------------------------~d~~l~~p~~R~l~lr~~~~~~---- 159 (658)
.++.||+|.|+|.+..++.+. +|++++ +||||||++...+
T Consensus 158 ~l~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r---~RyLDL~~n~~~~~ifr 234 (659)
T PTZ00385 158 SLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYR---YRFTDMMTNPCVIETIK 234 (659)
T ss_pred CCCCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcc---cceeeeecCHHHHHHHH
Confidence 699999999999987765443 233333 4999998765332
Q ss_pred ------CchHHHhhhCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecC
Q psy8087 160 ------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAE 230 (658)
Q Consensus 160 ------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E 230 (658)
++||+||.++||+||+||+|++...|+++++|.+ ++|+.++||+||||||||+|++ |++||||||||||||
T Consensus 235 ~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE 314 (659)
T PTZ00385 235 KRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNE 314 (659)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCC
Confidence 6999999999999999999986666667899954 6789999999999999999987 899999999999999
Q ss_pred CCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccc---cCC--CCCCCCCCcceeeHHHHHHHH
Q psy8087 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ---MNP--NFEPPARPFLRMNYADAIEYL 305 (658)
Q Consensus 231 ~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~---~~~--~~~~~~~pf~rit~~ea~~~l 305 (658)
+++ .||||||||||||++|+||+|||+++|+||++++..+.+.....+.. .+. ++ ....||+|+||.|++..+
T Consensus 315 ~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i-~~~~Pf~Rit~~d~~~e~ 392 (659)
T PTZ00385 315 DAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTV-DLGKPFRRVSVYDEIQRM 392 (659)
T ss_pred CCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccc-cCCCCceEEeHHHHHHHH
Confidence 997 59999999999999999999999999999999999998754322210 011 11 234699999977776653
Q ss_pred HHcCCCCCCC---C---------------------CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCc
Q psy8087 306 RKHEIRKPDN---T---------------------EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENP 361 (658)
Q Consensus 306 ~~~g~~~~~~---~---------------------~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~ 361 (658)
.|++.+.. . ...+|..++.+++.++++.+.+|+||+|||.+++|| ++.+++||
T Consensus 393 --~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l~qPtFI~dyP~e~sPL-ak~~~~dp 469 (659)
T PTZ00385 393 --SGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPL-AKEQVSRP 469 (659)
T ss_pred --hCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhhCCcEEEeCCccccCcc-cccCCCCC
Confidence 46654311 0 112244455667888999999999999999999999 88999999
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHH-----cCCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKR-----EGIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~-----~g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
++++|||||++|+ ||+|||+|+|||.+|++||++ .+.|++.+ +|||+|++||||||||||||||||+|+||
T Consensus 470 ~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGIDRLvMllt 548 (659)
T PTZ00385 470 GLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGIDRALMLLT 548 (659)
T ss_pred CeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHHHHHHHHc
Confidence 9999999999997 999999999999999999954 35566654 89999999999999999999999999999
Q ss_pred cccCcchhhHHHHHhhhhhhh
Q psy8087 434 NQYHVRDKYQLIAKAQLKKVS 454 (658)
Q Consensus 434 g~~~Irdvi~f~~k~~lk~~~ 454 (658)
|.+|||||++| |.||+..
T Consensus 549 g~~sIReVilF---P~mr~~~ 566 (659)
T PTZ00385 549 NSSNIRDGIIF---PLLRQDI 566 (659)
T ss_pred CCcchhheecC---ccccccc
Confidence 99999999999 6777753
No 16
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-87 Score=744.31 Aligned_cols=370 Identities=27% Similarity=0.427 Sum_probs=318.4
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEeccc-c-h-hh-hhhcCCCccEEEEEEEeEeCCC-------Cc
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADIL-C-Q-TE-HALLLSTESSVQFRGRIEKVPE-------EN 137 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~-~-~-~~-~~~~l~~es~V~v~G~l~~~p~-------~~ 137 (658)
.|++|+|+|||+++|.+|| ++|++|||+++.||+|++.+. . . .+ ....|+.||+|.|+|+|...+. +.
T Consensus 77 ~g~~V~v~Grv~~~R~~Gk-~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~ 155 (550)
T PTZ00401 77 VDKTVLIRARVSTTRKKGK-MAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSD 155 (550)
T ss_pred CCCEEEEEEEEEEEecCCC-eEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCcc
Confidence 7899999999999999995 899999999999999997432 1 1 12 2357999999999999886321 11
Q ss_pred -------------------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCc
Q psy8087 138 -------------------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGI 171 (658)
Q Consensus 138 -------------------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF 171 (658)
+|++++| ||||||++..++ ++||+||.++||
T Consensus 156 ~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~---R~LdlR~~~~~~i~r~rs~i~~~~R~fl~~~gF 232 (550)
T PTZ00401 156 IELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNS---RWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDF 232 (550)
T ss_pred EEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhh---hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 1234444 999999876655 599999999999
Q ss_pred EEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 172 AKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 172 ~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
+||+||+|+.+++|||+++|+++|||.++||+||||||||++++ |++||||||||||||+++|+|||||||||||||+|
T Consensus 233 iEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~ 312 (550)
T PTZ00401 233 CEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRI 312 (550)
T ss_pred EEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHh
Confidence 99999999988899999999999999999999999999999997 69999999999999999999999999999999998
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHhhccccc--cc------------------ccCCCCC---------------CCCCCcc
Q psy8087 251 L-TFDDLLDKLEDLICDTVDRVMATHGDL--VR------------------QMNPNFE---------------PPARPFL 294 (658)
Q Consensus 251 ~-d~~~~m~~~e~li~~i~~~~~~~~~~~--~~------------------~~~~~~~---------------~~~~pf~ 294 (658)
. +|+++|+++|+||.+++..+.+..... +. ..+.+.. ....||+
T Consensus 313 ~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (550)
T PTZ00401 313 NEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRML 392 (550)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHhcCCCcc
Confidence 6 799999999999999999887642210 00 0011110 0123699
Q ss_pred eeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhh----cccCCcEEEEe-CCCCCCCCCCccCCCCcCceeEEEE
Q psy8087 295 RMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMT----DQINRPIMLCR-FPADIKSFYMSKCPENPALTESVDV 369 (658)
Q Consensus 295 rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~----~~~~~p~fi~~-~P~~~~pfy~~~~~~~~~~~~~fdL 369 (658)
||+|.||+++|++.|.. ...|++|++..+|++|+ +.++.|+||+| ||.+++|||+|++++||++++||||
T Consensus 393 rl~y~eai~lL~~~~~~-----~~~~~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDl 467 (550)
T PTZ00401 393 RINYMHCIELLNTVLEE-----KMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDM 467 (550)
T ss_pred cccHHHHHHHHHHhccc-----CCCcccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEE
Confidence 99999999999987522 13567899999998775 55688999998 9999999999999999999999999
Q ss_pred EeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 370 LFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 370 ~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|++| +||+|||+|+|||++|++|++++|+|++.++|||+|++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 468 f~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp 545 (550)
T PTZ00401 468 FIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDP 545 (550)
T ss_pred EeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCC
Confidence 9999 59999999999999999999999999999999999999999999999999999999999999999999998543
No 17
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=8.2e-87 Score=745.63 Aligned_cols=395 Identities=19% Similarity=0.278 Sum_probs=320.5
Q ss_pred cCCCCC-CCCccccccccccCC-----CccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc----hhhh
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGP-----AGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC----QTEH 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~----~~~~ 114 (658)
..|||. |+.++++.++.+... ....+..|+|+|||+++|++|++++|++|+|++|.||||++++.. ..|.
T Consensus 101 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 101 INPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCeeEEEEEECCccCCCHHHHH
Confidence 357876 777888888754321 111345699999999999999779999999999999999987532 2232
Q ss_pred --hhcCCCccEEEEEEEeEeCCCCcc--------------------------ceEecCCCceeEEeecCCccc-------
Q psy8087 115 --ALLLSTESSVQFRGRIEKVPEENM--------------------------KVQLIHPSSYAIVWLGDLKQG------- 159 (658)
Q Consensus 115 --~~~l~~es~V~v~G~l~~~p~~~~--------------------------d~~l~~p~~R~l~lr~~~~~~------- 159 (658)
...++.||+|.|+|.+..++.+.+ +++++ .||||||.+...+
T Consensus 181 ~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r---~RyLdL~~n~~~~~ifr~RS 257 (585)
T PTZ00417 181 ECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKYGLKDTEIRYR---QRYLDLMINESTRSTFITRT 257 (585)
T ss_pred HHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCcccCCCCcccccc---cchhhhhcCHHHHHHHHHHH
Confidence 246999999999999987765552 23333 4999999665433
Q ss_pred ---CchHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 ---GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ---~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
++||+||.++||+||+||+|++ .++|| +.||. +++++.++||+||||||||+|++ |++||||||||||||++
T Consensus 258 ~Ii~aiR~Ff~~rGFlEVeTPiL~~-~~GGA~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~ 336 (585)
T PTZ00417 258 KIINYLRNFLNDRGFIEVETPTMNL-VAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI 336 (585)
T ss_pred HHHHHHHHHHHHCCeEEEeCCeeec-cCCcccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC
Confidence 6999999999999999999975 46555 45884 48999999999999999999987 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCC-----CCCCCCCCcceeeHHHHHHHH--
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP-----NFEPPARPFLRMNYADAIEYL-- 305 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~-----~~~~~~~pf~rit~~ea~~~l-- 305 (658)
++ ||||||||||||++|+||+|||+++|+||++++..+.+.....+...+. ++ .+..||+++||.||++.+
T Consensus 337 ~~-rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i-~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 337 DN-THNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEI-DFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccc-cCCCCceeccHHHHHHHHhC
Confidence 85 9999999999999999999999999999999999998765433322111 11 134799999999988743
Q ss_pred --------------------HHcCCCCCCCCCcccCCCCCCchhhhhhcccC-CcEEEEeCCCCCCCCCCccCCCCcCce
Q psy8087 306 --------------------RKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN-RPIMLCRFPADIKSFYMSKCPENPALT 364 (658)
Q Consensus 306 --------------------~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~ 364 (658)
++.|++.+. ..+|+..++.+++.++++.+. .|+||+|||.+++|| ++.+++||+++
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~--~~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPL-ak~~~~dp~v~ 491 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPN--PPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPL-AKYHRSKPGLT 491 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCch-hhhcCCCCCeE
Confidence 233333221 245677788889999999886 499999999999999 57888899999
Q ss_pred eEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-----CCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHhccc
Q psy8087 365 ESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-----GIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436 (658)
Q Consensus 365 ~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-----g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~ 436 (658)
+|||||++|+ ||+|||+|+|||.+|++||+.+ +.+++.+ ++||+|++||||||||||||||||+|+|||.+
T Consensus 492 eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~ 570 (585)
T PTZ00417 492 ERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKN 570 (585)
T ss_pred EeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCc
Confidence 9999999997 9999999999999999998754 2254543 45999999999999999999999999999999
Q ss_pred CcchhhHHHHHhhhhh
Q psy8087 437 HVRDKYQLIAKAQLKK 452 (658)
Q Consensus 437 ~Irdvi~f~~k~~lk~ 452 (658)
||||||+|| .+|+
T Consensus 571 sIrdVi~FP---~~r~ 583 (585)
T PTZ00417 571 CIKDVILFP---TMRP 583 (585)
T ss_pred chheeecCC---CCCC
Confidence 999999995 5553
No 18
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=8.2e-87 Score=743.25 Aligned_cols=370 Identities=28% Similarity=0.449 Sum_probs=320.8
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hh-h-hhhcCCCccEEEEEEEeEeCCC------C
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QT-E-HALLLSTESSVQFRGRIEKVPE------E 136 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~-~-~~~~l~~es~V~v~G~l~~~p~------~ 136 (658)
..|++|+|+|||+++|.+|| ++|++|||+++.||+|+..+.. .. + +...|+.||+|.|+|.|...+. +
T Consensus 79 ~~g~~V~v~Grv~~~R~~gk-~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~ 157 (530)
T PLN02850 79 LAGSEVLIRGRVHTIRGKGK-SAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQ 157 (530)
T ss_pred hCCCEEEEEEEEEEEccCCC-eEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCc
Confidence 67899999999999999997 8999999999999999976532 11 1 2457999999999999984221 1
Q ss_pred c----------------------------------------------cceEecCCCceeEEeecCCccc---------Cc
Q psy8087 137 N----------------------------------------------MKVQLIHPSSYAIVWLGDLKQG---------GY 161 (658)
Q Consensus 137 ~----------------------------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~ 161 (658)
. ++++++| ||||||++..++ ++
T Consensus 158 ~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~---R~LdlR~~~~qaifrirs~i~~~ 234 (530)
T PLN02850 158 QVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNN---RVLDLRTPANQAIFRIQSQVCNL 234 (530)
T ss_pred cEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcc---hhhhhcCHHHHHHHHHHHHHHHH
Confidence 1 1234444 999999876555 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcce
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAE 240 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~E 240 (658)
+|+||.++||+||+||+|+.+++|||+++|.++|||.++||+||||||||++++ |++||||||||||||+++|+|||||
T Consensus 235 ~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~E 314 (530)
T PLN02850 235 FREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCE 314 (530)
T ss_pred HHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchh
Confidence 999999999999999999989999999999999999999999999999999987 7999999999999999999999999
Q ss_pred eeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCCC--CCC--CCCCcceeeHHHHHHHHHHcCCCCCCC
Q psy8087 241 YTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN--FEP--PARPFLRMNYADAIEYLRKHEIRKPDN 315 (658)
Q Consensus 241 Ft~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~--~~~--~~~pf~rit~~ea~~~l~~~g~~~~~~ 315 (658)
||||||||+|. +|+|+|+++|+||++++..+.+.+...+..+... +.. ...+|+++||.||+++|++.|++.+
T Consensus 315 Ft~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~~~~-- 392 (530)
T PLN02850 315 FTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVD-- 392 (530)
T ss_pred hccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCCCCC--
Confidence 99999999998 6999999999999999999987764444333221 111 1237889999999999999886532
Q ss_pred CCcccCCCCCCchhhhhhc----ccCCc-EEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHH
Q psy8087 316 TEYEFGEDIPEMPERKMTD----QINRP-IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEEL 390 (658)
Q Consensus 316 ~~~~~g~~l~~~~e~~l~~----~~~~p-~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~ 390 (658)
++.+++.++|+.++. .++.| +||+|||.+++|||++++++||++++|||||++| +||+|||+|+|||++|
T Consensus 393 ----~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l 467 (530)
T PLN02850 393 ----PLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELL 467 (530)
T ss_pred ----CCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHH
Confidence 356888899988755 44454 6788999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 391 LAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 391 ~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++|+++.|+|++.++|||++++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 468 ~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p 525 (530)
T PLN02850 468 EKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525 (530)
T ss_pred HHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999998654
No 19
>KOG1885|consensus
Probab=100.00 E-value=4e-88 Score=705.69 Aligned_cols=403 Identities=17% Similarity=0.268 Sum_probs=335.7
Q ss_pred CcCCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hhhh
Q psy8087 44 SLLPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QTEH 114 (658)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~~~ 114 (658)
-..|||. |..++++.++.+-. ++......|+|+|||+++|.+|.+|+|++|++++.+||||++.+.. ..|.
T Consensus 72 ~~~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 72 GLNPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHH
Confidence 3678988 77777777764311 2334456699999999999999999999999999999999998763 2342
Q ss_pred --hhcCCCccEEEEEEEeEeCCCCccceEec--------------------CC----CceeEEeecCCccc---------
Q psy8087 115 --ALLLSTESSVQFRGRIEKVPEENMKVQLI--------------------HP----SSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 115 --~~~l~~es~V~v~G~l~~~p~~~~d~~l~--------------------~p----~~R~l~lr~~~~~~--------- 159 (658)
...|+.||+|.|+|.+.++..+++.+..+ +. ..||+||..|...+
T Consensus 152 ~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakI 231 (560)
T KOG1885|consen 152 QLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKI 231 (560)
T ss_pred HHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 24699999999999998888776322211 11 14899998887443
Q ss_pred -CchHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCC
Q psy8087 160 -GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRT 234 (658)
Q Consensus 160 -~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~ 234 (658)
+.||.||+++||+|||||||. ..++|| |.|| ++|.+++++|||+|||||+|+|++ |++||||||+.|||||+|.
T Consensus 232 I~~iRkfld~rgFlEVETPmmn-~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDl 310 (560)
T KOG1885|consen 232 ISYIRKFLDSRGFLEVETPMMN-MIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDL 310 (560)
T ss_pred HHHHHHHhhhcCceEecchhhc-cccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCccc
Confidence 699999999999999999995 667676 6799 778999999999999999999998 7999999999999999987
Q ss_pred ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC----CCCCCCcceeeHHHHHHHHHHcCC
Q psy8087 235 RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF----EPPARPFLRMNYADAIEYLRKHEI 310 (658)
Q Consensus 235 ~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~----~~~~~pf~rit~~ea~~~l~~~g~ 310 (658)
+||||||.||+||||+||+|||+++|+|++.+++.+.+++...+.-.+++. ..++.||+||+|.+.++. +.|+
T Consensus 311 -THNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k--~lgi 387 (560)
T KOG1885|consen 311 -THNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEK--ELGI 387 (560)
T ss_pred -ccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHH--HhCC
Confidence 999999999999999999999999999999999999998765443322211 013579999999999985 5787
Q ss_pred CCCCCCCc------------------------ccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeE
Q psy8087 311 RKPDNTEY------------------------EFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTES 366 (658)
Q Consensus 311 ~~~~~~~~------------------------~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~ 366 (658)
+.+..... .-+..|+++++.+|++++.+|+||.|+|..|||+ ||.|+..+++++|
T Consensus 388 ~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~imSPL-AK~hrs~~glteR 466 (560)
T KOG1885|consen 388 KLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIMSPL-AKYHRSKAGLTER 466 (560)
T ss_pred CCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEcCCchhcCcc-ccccccccchhhH
Confidence 77642110 1123466788888999999999999999999998 9999999999999
Q ss_pred EEEEeCCcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCc
Q psy8087 367 VDVLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHV 438 (658)
Q Consensus 367 fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~I 438 (658)
||||++|. ||||+|+|+|||..|++||++| |.|+.+ +++|+.||+|||||+||||||||||+|+||+.+||
T Consensus 467 FElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllTds~~I 545 (560)
T KOG1885|consen 467 FELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLTDSNNI 545 (560)
T ss_pred HHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhcCCcch
Confidence 99999996 9999999999999999999875 545433 68999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhhh
Q psy8087 439 RDKYQLIAKAQLKKVSK 455 (658)
Q Consensus 439 rdvi~f~~k~~lk~~~K 455 (658)
|||++| +.||+..+
T Consensus 546 ~EVL~F---p~mkp~~~ 559 (560)
T KOG1885|consen 546 REVLLF---PAMKPEDR 559 (560)
T ss_pred hheeec---cccChhcc
Confidence 999999 67776643
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.3e-85 Score=776.57 Aligned_cols=388 Identities=19% Similarity=0.273 Sum_probs=323.8
Q ss_pred cCCCCC-CCCccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hh--hhhcCC
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TE--HALLLS 119 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~--~~~~l~ 119 (658)
.+|||. |+.+++++++.+. ..+++|+|+|||+++|.+|| ++|++|+|++|.||||++++... .+ ....++
T Consensus 629 ~~pyp~~~~~~~~~~~~~~~----~~~~~V~v~Grv~~~R~~G~-~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~ 703 (1094)
T PRK02983 629 VDPYPVGVPPTHTVAEALDA----PTGEEVSVSGRVLRIRDYGG-VLFADLRDWSGELQVLLDASRLEQGSLADFRAAVD 703 (1094)
T ss_pred CCCCCCCCcCccCHHHHHHh----cCCCEEEEEEEEEEEeeCCC-eEEEEEEeCCeeEEEEEECCccchhhHHHHHhcCC
Confidence 468987 7888888888553 56788999999999999995 99999999999999999876532 12 124689
Q ss_pred CccEEEEEEEeEeCCCCccc---------------------------eEecCCCceeEEeecCCccc----------Cch
Q psy8087 120 TESSVQFRGRIEKVPEENMK---------------------------VQLIHPSSYAIVWLGDLKQG----------GYP 162 (658)
Q Consensus 120 ~es~V~v~G~l~~~p~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~----------~~i 162 (658)
.||+|.|+|.+.+++.+.++ ++++ +||||||++...+ ++|
T Consensus 704 ~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~e~R~r---~R~lDL~~n~~~~~~~r~Rs~i~~~i 780 (1094)
T PRK02983 704 LGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVR---QRYLDLAVNPEARDLLRARSAVVRAV 780 (1094)
T ss_pred CCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCChhhcch---hhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999988876632 3333 4999998765433 699
Q ss_pred HHHhhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcc
Q psy8087 163 PEVSLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLA 239 (658)
Q Consensus 163 R~fl~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~ 239 (658)
|+||.++||+||+||+|++..++++++|| ++|||++++||+||||||||+|++ |++||||||||||||++++ ||||
T Consensus 781 R~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~-rHnp 859 (1094)
T PRK02983 781 RETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDA-THNP 859 (1094)
T ss_pred HHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCC-Cccc
Confidence 99999999999999999755443346899 779999999999999999999987 8999999999999999986 9999
Q ss_pred eeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhccccccccc-----CCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC
Q psy8087 240 EYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQM-----NPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314 (658)
Q Consensus 240 EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~-----~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~ 314 (658)
||||||+||+|+||+|||+++|+||+++++.+.++........ .++ ++.||+|+||.||++.+ .|++...
T Consensus 860 EFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~---~~~pf~rit~~eai~~~--~g~~~~~ 934 (1094)
T PRK02983 860 EFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVD---ISGPWPVVTVHDAVSEA--LGEEIDP 934 (1094)
T ss_pred cccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccc---cCCCceEEEHHHHHHHH--hCCCCCC
Confidence 9999999999999999999999999999999986543211111 122 35799999999999853 3432211
Q ss_pred ------------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcce
Q psy8087 315 ------------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGE 376 (658)
Q Consensus 315 ------------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~E 376 (658)
...+.+|+.+++.+++++++++.+|+||+|||.+++||| |.+++||++++|||||++|+ |
T Consensus 935 ~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla-~~~~~~p~~~erFdL~i~G~-E 1012 (1094)
T PRK02983 935 DTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLT-RPHRSDPGLAERWDLVAWGV-E 1012 (1094)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCCccccccc-ccCCCCCCeeEEEEEEECCE-E
Confidence 012334556677889999999999999999999999995 67889999999999999998 9
Q ss_pred eeeceeccCCHHHHHHHHHHc-----CCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 377 VIGGSMRIWDPEELLAGYKRE-----GIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 377 i~~G~~r~~d~~~~~~~~~~~-----g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+|||+|+|||.+|++||+++ +.|++.+ +|||+|++||||||||||||||||+|+|||. ||||||+||
T Consensus 1013 i~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP--- 1088 (1094)
T PRK02983 1013 LGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFP--- 1088 (1094)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCC---
Confidence 999999999999999999864 5577654 6999999999999999999999999999996 999999995
Q ss_pred hhhh
Q psy8087 449 QLKK 452 (658)
Q Consensus 449 ~lk~ 452 (658)
.+|+
T Consensus 1089 ~~k~ 1092 (1094)
T PRK02983 1089 LVKP 1092 (1094)
T ss_pred cCCC
Confidence 4554
No 21
>KOG0555|consensus
Probab=100.00 E-value=1.6e-83 Score=657.84 Aligned_cols=377 Identities=62% Similarity=1.048 Sum_probs=361.7
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCc---------
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEEN--------- 137 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~--------- 137 (658)
+..|+.|.|.|||+++|+. |+++|++|||++|.+|||++++.+..++...|+.||+|.|.|+++.+|+|+
T Consensus 120 ~~r~qrVkv~gWVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~ 198 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELN 198 (545)
T ss_pred cccCceEEeehhhHhhhhc-CceEEEEEecCCceEEEEEcchhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEE
Confidence 4678999999999999998 789999999999999999999988888888999999999999999999765
Q ss_pred ------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccC
Q psy8087 138 ------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQV 184 (658)
Q Consensus 138 ------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~ 184 (658)
+++.|+| |||-+|..+.++ +++|+++.+.|+.||.+|.|+|...
T Consensus 199 vdy~Eiig~Apag~~~n~lne~s~~~~~Ldn---rHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV 275 (545)
T KOG0555|consen 199 VDYWEIIGLAPAGGFDNPLNEESDVDVLLDN---RHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQV 275 (545)
T ss_pred eeeeeeecccCCCcccccccccCCcceEecc---ceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEe
Confidence 4666777 999999988766 6999999999999999999999999
Q ss_pred CCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHH
Q psy8087 185 EGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLI 264 (658)
Q Consensus 185 eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li 264 (658)
|||+..|+++|||.++||+||.||||+.++.++++||+|.++||+|.++|+||+.|||++|+|++|.+++++|+.+|+|+
T Consensus 276 EGGsTLFkldYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lv 355 (545)
T KOG0555|consen 276 EGGSTLFKLDYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALV 355 (545)
T ss_pred cCcceEEeecccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc-cccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEE
Q psy8087 265 CDTVDRVMATHGD-LVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343 (658)
Q Consensus 265 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~ 343 (658)
.+.+..+.+.+.. .+..++++|..++.||.||.|.|||+.|+++++.++++..+.+|+|+.+..||++.+.++.|+|++
T Consensus 356 c~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg~PIfLt 435 (545)
T KOG0555|consen 356 CDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIGVPIFLT 435 (545)
T ss_pred HHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcCCceEEe
Confidence 9999999988754 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceec
Q psy8087 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGL 423 (658)
Q Consensus 344 ~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~Gi 423 (658)
.||.++++|||+++.+|++++++.|+++||+|||+|||+|+.|.+++.+.|+..|+|+.+|.||++.++||..||||+||
T Consensus 436 rFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGL 515 (545)
T KOG0555|consen 436 RFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGL 515 (545)
T ss_pred eccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccCcchhhHHHHH
Q psy8087 424 GLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 424 GidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|+||++|||++..+||||.+||..
T Consensus 516 GlERfL~wL~~r~~vre~cLyPRf 539 (545)
T KOG0555|consen 516 GLERFLAWLCDRYHVREVCLYPRF 539 (545)
T ss_pred cHHHHHHHHhcccchhheeecchh
Confidence 999999999999999999999865
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=3.6e-83 Score=716.05 Aligned_cols=374 Identities=25% Similarity=0.377 Sum_probs=302.9
Q ss_pred cccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeC
Q psy8087 55 CEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~ 133 (658)
+.++++.. ..+|++|+|+|||+++|.+|| ++|++|||++|.||||++++ ...+ ....|+.||+|.|+|.|..+
T Consensus 4 ~~~~~l~~----~~~g~~V~l~GwV~~~R~~Gk-l~Fi~LrD~sg~iQvv~~~~-~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRT----EHLGQTVTLAGWVNRRRDLGG-LIFIDLRDRSGIVQVVCDPD-ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcch----hhCCCEEEEEEEEEEEEcCCC-cEEEEEEeCCccEEEEEeCC-HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 34556643 367899999999999999986 99999999999999999865 2222 23579999999999999875
Q ss_pred C---------CCccc---------------------------eEecCCCceeEEeecCCccc---------CchHHHhhh
Q psy8087 134 P---------EENMK---------------------------VQLIHPSSYAIVWLGDLKQG---------GYPPEVSLA 168 (658)
Q Consensus 134 p---------~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~ 168 (658)
| .+.+| +|++ +||||||++..++ ++||+||.+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~~~~~~~Rl~---~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~ 154 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLK---YRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQ 154 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCcccccccchhhhcc---cceEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 22222 2233 5999999876554 699999999
Q ss_pred CCcEEEcCCccccccCCCCccce-eeccCCc-ceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeee
Q psy8087 169 NGIAKVTPPTLVQTQVEGGSTLF-SLNFFGE-PAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVE 245 (658)
Q Consensus 169 ~gF~EV~TPiL~~~~~eG~~~~F-~~~~~~~-~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 245 (658)
+||+||+||+|+++++|||++.+ +.++++. .+||+||||||||+||+ |++||||||||||||+++++|| |||||||
T Consensus 155 ~gFiEVeTP~L~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le 233 (583)
T TIGR00459 155 QGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQID 233 (583)
T ss_pred CCCEEEECCeeccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCC-cccCcce
Confidence 99999999999988998886532 4444444 45699999999999887 7999999999999999999777 9999999
Q ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC--------
Q psy8087 246 AECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE-------- 317 (658)
Q Consensus 246 ~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~-------- 317 (658)
+||+|+|++|+|+++|+||+++++.+.+ ++ ++.||+||||.||++. +|.|+||.+.
T Consensus 234 ~E~af~d~~dvm~~~E~li~~v~~~v~~----------~~---~~~pf~r~ty~ea~~~---yGsDkPDlR~~~~~~d~~ 297 (583)
T TIGR00459 234 MEMSFMTQEDVMELIEKLVSHVFLEVKG----------ID---LKKPFPVMTYAEAMER---YGSDKPDLRFPLELIDVT 297 (583)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhC----------CC---CCCCceEEEHHHHHHH---HCCCCCccccCcccccHH
Confidence 9999999999999999999999998864 22 2479999999999986 6888886421
Q ss_pred --------------------------------cc-------------cCCC------CCC--c--------hh-------
Q psy8087 318 --------------------------------YE-------------FGED------IPE--M--------PE------- 329 (658)
Q Consensus 318 --------------------------------~~-------------~g~~------l~~--~--------~e------- 329 (658)
++ .|.. +.. . .+
T Consensus 298 ~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (583)
T TIGR00459 298 DLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILL 377 (583)
T ss_pred HhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHH
Confidence 00 0000 000 0 00
Q ss_pred ------------------------------------hhhhcccCCcEEEEeCCCC-----------CCCCCCccCCCCcC
Q psy8087 330 ------------------------------------RKMTDQINRPIMLCRFPAD-----------IKSFYMSKCPENPA 362 (658)
Q Consensus 330 ------------------------------------~~l~~~~~~p~fi~~~P~~-----------~~pfy~~~~~~~~~ 362 (658)
.++++...+|+||+|||.. ++|| ++++++|+.
T Consensus 378 ~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPf-T~p~~~d~~ 456 (583)
T TIGR00459 378 ERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPF-TMPKDEDLE 456 (583)
T ss_pred HHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCC-CCCCCCChh
Confidence 0112223469999999996 9999 567777776
Q ss_pred ---------ceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchhHHH
Q psy8087 363 ---------LTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVL 429 (658)
Q Consensus 363 ---------~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidRL~ 429 (658)
.+++|||++||+ ||+|||.|+|||+.|+++|+..|++++ .|++||+||+||||||||+|||||||+
T Consensus 457 ~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlv 535 (583)
T TIGR00459 457 NLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLM 535 (583)
T ss_pred hhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHH
Confidence 899999999998 999999999999999999998898765 389999999999999999999999999
Q ss_pred HHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 430 CWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 430 m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
|+|||.+||||||+||....-.+.+-.
T Consensus 536 mlLt~~~sIRDVIaFPKt~~g~dlm~~ 562 (583)
T TIGR00459 536 MLLTGTDNIRDVIAFPKTTAAACLMTE 562 (583)
T ss_pred HHHcCCCchhheeecCCCCCCcccccC
Confidence 999999999999999977665554443
No 23
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-82 Score=683.61 Aligned_cols=372 Identities=26% Similarity=0.389 Sum_probs=307.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhh-hhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEH-ALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~-~~~l~~es~V~v~G~l~ 131 (658)
++.++++... .+|++|+|+|||+++|++|+ |+|++|||.+|.+|||++.+.. +.+. +..++.|++|.|+|+|.
T Consensus 3 t~~cg~l~~~----~vG~~V~L~GWV~r~Rd~Gg-liFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~ 77 (585)
T COG0173 3 THYCGELRES----HVGQTVTLSGWVHRRRDHGG-LIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVR 77 (585)
T ss_pred ceeccccCHH----HCCCEEEEEeeeeeccccCC-eEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEE
Confidence 4556777543 78999999999999999996 9999999999999999998533 3343 45799999999999999
Q ss_pred eCCCCc---------cc----------------------------eEecCCCceeEEeecCCccc---------CchHHH
Q psy8087 132 KVPEEN---------MK----------------------------VQLIHPSSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 132 ~~p~~~---------~d----------------------------~~l~~p~~R~l~lr~~~~~~---------~~iR~f 165 (658)
..|++. +| +|| ++||||||++.++. +++|+|
T Consensus 78 ~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RL---kYRyLDLRR~~m~~~l~lR~kv~~~iR~~ 154 (585)
T COG0173 78 ARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRL---KYRYLDLRRPEMQKNLKLRSKVTKAIRNF 154 (585)
T ss_pred ecCccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhh---hhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 887642 22 223 35999999987765 599999
Q ss_pred hhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceee
Q psy8087 166 SLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYT 242 (658)
Q Consensus 166 l~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt 242 (658)
|.++||+||+||+|+++++|||.+.. +-.+.|++|.|+||||||||.||+ ||+|||||++|||+|+.+++|+ ||||
T Consensus 155 ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFT 233 (585)
T COG0173 155 LDDQGFLEIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ-PEFT 233 (585)
T ss_pred HhhcCCeEeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccC-Ccce
Confidence 99999999999999999999988744 334678999999999999999998 8999999999999999999999 9999
Q ss_pred eeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc----
Q psy8087 243 HVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY---- 318 (658)
Q Consensus 243 ~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~---- 318 (658)
|||+||+|.|-+|+|+++|+|+.++++.+.+- + ++.||+||||.|||.. +|+|+||++..
T Consensus 234 QiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i----------~---l~~pFprmtY~eAm~~---YGSDKPDlRf~lel~ 297 (585)
T COG0173 234 QIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI----------E---LKTPFPRMTYAEAMRR---YGSDKPDLRFPLELI 297 (585)
T ss_pred eEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------c---cCCCcccccHHHHHHH---hCCCCCcccCCceeh
Confidence 99999999999999999999999999987642 2 3469999999999986 79999987520
Q ss_pred ---------cc--------------------CCC------------------------------CCC--------c-hhh
Q psy8087 319 ---------EF--------------------GED------------------------------IPE--------M-PER 330 (658)
Q Consensus 319 ---------~~--------------------g~~------------------------------l~~--------~-~e~ 330 (658)
++ |.. +.. . .+.
T Consensus 298 dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~ 377 (585)
T COG0173 298 DVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEE 377 (585)
T ss_pred hHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHH
Confidence 00 000 000 0 000
Q ss_pred --------------------------------hhhccc-------CCcEEEEeCCC------------CCCCCCCccCCC
Q psy8087 331 --------------------------------KMTDQI-------NRPIMLCRFPA------------DIKSFYMSKCPE 359 (658)
Q Consensus 331 --------------------------------~l~~~~-------~~p~fi~~~P~------------~~~pfy~~~~~~ 359 (658)
.+.+.+ -.++||+|||. .|+||+|+ ++.
T Consensus 378 l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P-~~~ 456 (585)
T COG0173 378 LIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMP-KPE 456 (585)
T ss_pred HHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCC-Ccc
Confidence 011111 25899999995 68999654 433
Q ss_pred C-------c--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchh
Q psy8087 360 N-------P--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 360 ~-------~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
+ | ..+..|||++||+ ||+|||.|+|+|+.|.+.|+..|++++ .|..+|+|++||+|||||+|+|+|
T Consensus 457 ~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlD 535 (585)
T COG0173 457 DLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLD 535 (585)
T ss_pred chhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHH
Confidence 2 2 2478999999999 999999999999999999999999987 488999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHHhhhhh
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAKAQLKK 452 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k~~lk~ 452 (658)
||+|+|+|.+||||||+||...+--.
T Consensus 536 Rlvmll~g~~sIReVIAFPKt~~a~d 561 (585)
T COG0173 536 RLVMLLTGAESIRDVIAFPKTQQAAD 561 (585)
T ss_pred HHHHHHcCCCchhheeecCCCccccc
Confidence 99999999999999999997654433
No 24
>KOG0556|consensus
Probab=100.00 E-value=4.2e-82 Score=650.07 Aligned_cols=369 Identities=28% Similarity=0.463 Sum_probs=330.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-----h-hhhhcCCCccEEEEEEEeEeCCCCc----
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-----T-EHALLLSTESSVQFRGRIEKVPEEN---- 137 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-----~-~~~~~l~~es~V~v~G~l~~~p~~~---- 137 (658)
..++.|+|+|||++.|-.|| ++|++||+++.+|||++..+... . .+..+|+.||+|.|.|.|++.+...
T Consensus 80 ~~~~~V~vRgrVhtsr~~GK-~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT 158 (533)
T KOG0556|consen 80 NDGSEVLVRGRVHTSRLKGK-LCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCT 158 (533)
T ss_pred cCCceEEEEEEEeeccccce-EEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccc
Confidence 56789999999999999994 89999999999999999754321 1 1335799999999999997654321
Q ss_pred -------------------------------------------------cceEecCCCceeEEeecCCccc---------
Q psy8087 138 -------------------------------------------------MKVQLIHPSSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 138 -------------------------------------------------~d~~l~~p~~R~l~lr~~~~~~--------- 159 (658)
+|+||+| |.||||++..++
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdn---RvlDLRtptnqAiFriq~gvc 235 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDN---RVLDLRTPTNQAIFRIQAGVC 235 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccc---eeeecccccchheeehHHHHH
Confidence 4778887 999999999887
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhccc-CCcEEEEeeeeecCCCCCccCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g-~~rvfeI~~~FR~E~~~~~rHl 238 (658)
.++|+||..+||+||+||+|..+.+|||++.|.+.||+.++||+|||||||||+|+| |+|||||||+||+|+++|+||+
T Consensus 236 ~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhl 315 (533)
T KOG0556|consen 236 FAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHL 315 (533)
T ss_pred HHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhh
Confidence 499999999999999999999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred ceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCC-----CCCCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 239 AEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP-----NFEPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 239 ~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~-----~~~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
+||+.||+||+|. +|+|+|+++.+|+.+|++.+.+++...++..+. +|..+ .|-.|++|.|++.+|++.|++.
T Consensus 316 tEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~-~~~lrl~~~e~v~mLreaGvE~ 394 (533)
T KOG0556|consen 316 TEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFL-EPPLRLTFKEGVAMLREAGVEM 394 (533)
T ss_pred HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCceEeehHHHHHHHHHcCccc
Confidence 9999999999998 899999999999999999999888665544332 23222 3456999999999999999876
Q ss_pred CCCCCcccCCCCCCchhhhhhccc-----CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCH
Q psy8087 313 PDNTEYEFGEDIPEMPERKMTDQI-----NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDP 387 (658)
Q Consensus 313 ~~~~~~~~g~~l~~~~e~~l~~~~-----~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~ 387 (658)
.+ .+||++..|++|+... ..++++.+||.+++|||++++++||.++++||+|++| .||.+|.||+|||
T Consensus 395 g~------~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdp 467 (533)
T KOG0556|consen 395 GD------EDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDP 467 (533)
T ss_pred CC------ccccCChhHHHHHHHHHHHhCCcEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCH
Confidence 54 3689999999988654 3577888899999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 388 EELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+.|.+|++++|+|+.....|+++++||+|||||+|||+||++|+++|+.|||-+.+||..|
T Consensus 468 e~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDP 528 (533)
T KOG0556|consen 468 ELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDP 528 (533)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCc
Confidence 9999999999999988999999999999999999999999999999999999999999755
No 25
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.3e-79 Score=685.01 Aligned_cols=379 Identities=23% Similarity=0.344 Sum_probs=302.9
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-hh-hhhcCCCccEEEEEEEe
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-TE-HALLLSTESSVQFRGRI 130 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~~-~~~~l~~es~V~v~G~l 130 (658)
+++.++++.. ..+|++|+|+|||+++|.+| +++|++|||++|.+|||++++... .+ .+..|+.||+|.|+|.|
T Consensus 59 rt~~cg~l~~----~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V 133 (652)
T PLN02903 59 RSHLCGALSV----NDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEGTV 133 (652)
T ss_pred CCCchhhcch----hhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCccHHHHHHHhcCCCCCEEEEEEEE
Confidence 3667788855 37899999999999999988 599999999999999999865322 22 23579999999999999
Q ss_pred EeCCC---------CccceEec--------------------------C----CCceeEEeecCCccc---------Cch
Q psy8087 131 EKVPE---------ENMKVQLI--------------------------H----PSSYAIVWLGDLKQG---------GYP 162 (658)
Q Consensus 131 ~~~p~---------~~~d~~l~--------------------------~----p~~R~l~lr~~~~~~---------~~i 162 (658)
...|. +.+|+.++ + .++||||||++..++ ++|
T Consensus 134 ~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~i 213 (652)
T PLN02903 134 RSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLI 213 (652)
T ss_pred EeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHH
Confidence 86531 22111110 0 025999999876655 699
Q ss_pred HHHhhh-CCcEEEcCCccccccCCCCccceeecc--CCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCc
Q psy8087 163 PEVSLA-NGIAKVTPPTLVQTQVEGGSTLFSLNF--FGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 163 R~fl~~-~gF~EV~TPiL~~~~~eG~~~~F~~~~--~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl 238 (658)
|+||.+ +||+||+||+|+++++|||++.|...+ .|..+||+||||||||+||+ |++||||||||||||+++++||
T Consensus 214 R~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh- 292 (652)
T PLN02903 214 RRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ- 292 (652)
T ss_pred HHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-
Confidence 999997 999999999999999999887664443 36778999999999999887 8999999999999999999877
Q ss_pred ceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc
Q psy8087 239 AEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY 318 (658)
Q Consensus 239 ~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~ 318 (658)
||||||||||+|+|++|+|+++|+||+++++.+.+ ++ +..||+||||.||++. +|.|+||.+.-
T Consensus 293 pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~----------~~---~~~PF~rity~eA~~~---ygsDKPDlRf~ 356 (652)
T PLN02903 293 PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKG----------VQ---LPNPFPRLTYAEAMSK---YGSDKPDLRYG 356 (652)
T ss_pred cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhC----------CC---CCCCceEEEHHHHHHH---HcCCCCcccCC
Confidence 99999999999999999999999999999987764 12 2369999999999986 68888876410
Q ss_pred -------------cc------------------------------------------C----------CC--CCC---c-
Q psy8087 319 -------------EF------------------------------------------G----------ED--IPE---M- 327 (658)
Q Consensus 319 -------------~~------------------------------------------g----------~~--l~~---~- 327 (658)
.+ | ++ +.. .
T Consensus 357 ~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~ 436 (652)
T PLN02903 357 LELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALV 436 (652)
T ss_pred ceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchh
Confidence 00 0 00 100 0
Q ss_pred -h---hh-----------------------------------hhhccc-------CCcEEEEeCCC------------CC
Q psy8087 328 -P---ER-----------------------------------KMTDQI-------NRPIMLCRFPA------------DI 349 (658)
Q Consensus 328 -~---e~-----------------------------------~l~~~~-------~~p~fi~~~P~------------~~ 349 (658)
+ +. .|.+.+ -.++||+|||. .+
T Consensus 437 k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~H 516 (652)
T PLN02903 437 ESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALH 516 (652)
T ss_pred hcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecC
Confidence 0 00 011111 14789999995 68
Q ss_pred CCCCCccCCCCc-----CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccc
Q psy8087 350 KSFYMSKCPENP-----ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGG 420 (658)
Q Consensus 350 ~pfy~~~~~~~~-----~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG 420 (658)
+||+| ++++|- ..+.+|||++||+ ||+|||+|+||++.|+++|+..|++++ .|.|||+|++||+|||||
T Consensus 517 HPFTa-p~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG 594 (652)
T PLN02903 517 HPFTA-PNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGG 594 (652)
T ss_pred CCCCC-CCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 99965 554442 3578999999998 999999999999999999999999875 489999999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHhhhhhhhh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSK 455 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~~K 455 (658)
+|+|+|||+|+|+|.+||||||+||+...-.+.+-
T Consensus 595 ~alGldRlvmll~~~~~IrdviaFPKt~~g~dlm~ 629 (652)
T PLN02903 595 IAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQCALT 629 (652)
T ss_pred eeecHHHHHHHHcCCCchHheEecCCCCCcccccc
Confidence 99999999999999999999999997766555444
No 26
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.9e-77 Score=675.32 Aligned_cols=377 Identities=26% Similarity=0.371 Sum_probs=301.8
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.+|||++.. ...+ ....|+.||+|.|+|.|..
T Consensus 5 ~~~~~~l~~~----~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~-~~~~~~~~~l~~es~V~V~G~v~~ 78 (588)
T PRK00476 5 THYCGELRES----HVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD-AEAFEVAESLRSEYVIQVTGTVRA 78 (588)
T ss_pred ceeHHHhhHH----hCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC-HHHHHHHhCCCCCCEEEEEEEEEe
Confidence 4455666433 5788999999999999998 599999999999999999862 2223 2357999999999999998
Q ss_pred CCC---------CccceEecC----------C---------------CceeEEeecCCccc---------CchHHHhhhC
Q psy8087 133 VPE---------ENMKVQLIH----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLAN 169 (658)
Q Consensus 133 ~p~---------~~~d~~l~~----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~ 169 (658)
+|. +.+|+.+++ | ++||||||++..++ +++|+||.++
T Consensus 79 ~~~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~ 158 (588)
T PRK00476 79 RPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDN 158 (588)
T ss_pred cCCcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 762 222222110 0 25999999876554 6999999999
Q ss_pred CcEEEcCCccccccCCCCccceeec---cCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeee
Q psy8087 170 GIAKVTPPTLVQTQVEGGSTLFSLN---FFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVE 245 (658)
Q Consensus 170 gF~EV~TPiL~~~~~eG~~~~F~~~---~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 245 (658)
||+||+||+|+++++|||++ |.+. +.+..+||+||||||||+|++ |++||||||||||||+++++||+ ||||||
T Consensus 159 gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le 236 (588)
T PRK00476 159 GFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQP-EFTQID 236 (588)
T ss_pred CCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCc-ccccce
Confidence 99999999999889988765 6433 678888999999999999887 79999999999999999998886 999999
Q ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc-------
Q psy8087 246 AECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY------- 318 (658)
Q Consensus 246 ~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~------- 318 (658)
|||+|+|++|+|+++|+||+++++.+.+. + ++.||+|+||.||++. +|.|+||.+..
T Consensus 237 ~e~af~~~~dvm~~~E~li~~i~~~~~~~----------~---~~~pf~r~ty~ea~~~---yg~dkPDlR~~~eI~DVT 300 (588)
T PRK00476 237 IEMSFVTQEDVMALMEGLIRHVFKEVLGV----------D---LPTPFPRMTYAEAMRR---YGSDKPDLRFGLELVDVT 300 (588)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhCc----------c---CCCCceEEEHHHHHHH---HCCCCCcccCCceehhHH
Confidence 99999999999999999999999988642 2 2479999999999985 68888876410
Q ss_pred ---------------------------cc-------------------C----------C-CCCC-----chh----h--
Q psy8087 319 ---------------------------EF-------------------G----------E-DIPE-----MPE----R-- 330 (658)
Q Consensus 319 ---------------------------~~-------------------g----------~-~l~~-----~~e----~-- 330 (658)
.. | + .+.. ..+ .
T Consensus 301 ~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~ 380 (588)
T PRK00476 301 DLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALL 380 (588)
T ss_pred HHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHH
Confidence 00 0 0 0100 000 0
Q ss_pred ------------------------------hhhcc---c----CCcEEEEeCCC------------CCCCCCCccCCC--
Q psy8087 331 ------------------------------KMTDQ---I----NRPIMLCRFPA------------DIKSFYMSKCPE-- 359 (658)
Q Consensus 331 ------------------------------~l~~~---~----~~p~fi~~~P~------------~~~pfy~~~~~~-- 359 (658)
.+.+. + -.++||+|||. .|+||+| ++++
T Consensus 381 e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~-p~~~d~ 459 (588)
T PRK00476 381 ERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTM-PKDEDL 459 (588)
T ss_pred HHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCC-cCccCh
Confidence 00010 1 24789999995 6899966 4443
Q ss_pred ------Cc--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchhH
Q psy8087 360 ------NP--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 360 ------~~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
|| ..+++|||++||+ ||+|||+|+||++.|+++|+..|++++ .|+|||+|++||+|||||||+|+||
T Consensus 460 ~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr 538 (588)
T PRK00476 460 DELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDR 538 (588)
T ss_pred hHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHH
Confidence 43 3679999999998 999999999999999999999999876 5899999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 428 VLCWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
|+|+|+|.+||||||+||....-++.+-.
T Consensus 539 ~~~~~~~~~~irdvi~fp~~~~g~d~~~~ 567 (588)
T PRK00476 539 LVMLLAGADSIRDVIAFPKTQSAQDLLTG 567 (588)
T ss_pred HHHHHcCCccHHheeeccCCCCccccccC
Confidence 99999999999999999987666655443
No 27
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=6.9e-78 Score=639.19 Aligned_cols=303 Identities=39% Similarity=0.704 Sum_probs=274.7
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHH
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQL 208 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spql 208 (658)
+|+++++ ||||+|++..++ +++|+||.++||+||+||+|+++++||++++|+++|||.++||+|||||
T Consensus 4 ~~~~~~~---r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql 80 (322)
T cd00776 4 LETLLDN---RHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQL 80 (322)
T ss_pred hHhhhhC---ceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHH
Confidence 4567777 999999765443 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccc---cCC
Q psy8087 209 YLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQ---MNP 284 (658)
Q Consensus 209 ylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~---~~~ 284 (658)
|||++++|++|||+||||||||++++.||||||||||||++|+ |++|+|+++|+||++++..+.+.+...+.. .+.
T Consensus 81 ~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~~~~ 160 (322)
T cd00776 81 YKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNR 160 (322)
T ss_pred HHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhccCc
Confidence 9999998899999999999999999999999999999999999 999999999999999999998776544322 221
Q ss_pred CCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc-CCcEEEEeCCCCCCCCCCccCCCCcCc
Q psy8087 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPAL 363 (658)
Q Consensus 285 ~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~ 363 (658)
....+..||+||||.||++++++.|... ...||++++..+|+++++.+ +.|+||+|||.+++|||++.++++|++
T Consensus 161 ~~~~~~~~~~rit~~eA~~~l~~~~~~~----~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~ 236 (322)
T cd00776 161 ELLKPLEPFPRITYDEAIELLREKGVEE----EVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEIKPFYMKPDDDNPET 236 (322)
T ss_pred ccccCCCCceEEEHHHHHHHHHHcCCCC----CCCccchhcHHHHHHHHHHhCCCcEEEECCccccCCceeeecCCCCCe
Confidence 1112357999999999999998877531 24688999999999999988 899999999999999999999999999
Q ss_pred eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhH
Q psy8087 364 TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQ 443 (658)
Q Consensus 364 ~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~ 443 (658)
++|||||++|++||+|||+|+|||++|++||+++|++++.++|||+|++||+|||||||||||||+|+++|.+|||||++
T Consensus 237 ~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~ 316 (322)
T cd00776 237 VESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAIL 316 (322)
T ss_pred eEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEee
Confidence 99999999995599999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8087 444 LIAK 447 (658)
Q Consensus 444 f~~k 447 (658)
||..
T Consensus 317 FPr~ 320 (322)
T cd00776 317 FPRD 320 (322)
T ss_pred cCCC
Confidence 9854
No 28
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=6.8e-77 Score=673.39 Aligned_cols=370 Identities=22% Similarity=0.369 Sum_probs=294.7
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGR 129 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~ 129 (658)
+++.++++... ..|+.|+|+|||+++|++|| ++|++|||++|.||||++++.. ..+ ....|+.||+|.|+|.
T Consensus 5 r~~~cg~l~~~----~~g~~V~l~GWV~~~R~~G~-l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~ 79 (706)
T PRK12820 5 DRSFCGHLSLD----DTGREVCLAGWVDAFRDHGE-LLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGE 79 (706)
T ss_pred cccccccCChh----hCCCEEEEEEEEEEEEcCCC-cEEEEEEeCCccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeE
Confidence 35566788553 67899999999999999985 9999999999999999986542 123 2357999999999999
Q ss_pred eEeCCC---------Cccc---------------------------------------eEecCCCceeEEeecCCccc--
Q psy8087 130 IEKVPE---------ENMK---------------------------------------VQLIHPSSYAIVWLGDLKQG-- 159 (658)
Q Consensus 130 l~~~p~---------~~~d---------------------------------------~~l~~p~~R~l~lr~~~~~~-- 159 (658)
|..+|. +.+| +|+ ++||||||++..++
T Consensus 80 v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl---~~RyLDLR~~~~~~~l 156 (706)
T PRK12820 80 VQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRL---QYRYLDIRRPAMQDHL 156 (706)
T ss_pred EeccCccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhh---hCceeecCCHHHHHHH
Confidence 987532 2111 122 25999999876554
Q ss_pred -------CchHHHhhhCCcEEEcCCccccccCCCCccce-eeccCC-cceeeccCHHHHHHHhcc-cCCcEEEEeeeeec
Q psy8087 160 -------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLF-SLNFFG-EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRA 229 (658)
Q Consensus 160 -------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F-~~~~~~-~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~ 229 (658)
++||+||.++||+||+||+|+++++|||++.+ +.++++ ..++|+||||||||+||+ |++|||||||||||
T Consensus 157 r~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~ 236 (706)
T PRK12820 157 AKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRD 236 (706)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcC
Confidence 69999999999999999999999999987754 555554 455699999999999986 89999999999999
Q ss_pred CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcC
Q psy8087 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHE 309 (658)
Q Consensus 230 E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g 309 (658)
|+++++|| ||||||||||+|+|++|+|+++|+||+++++ +. +.+ ++.||+||||.||++. +|
T Consensus 237 E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~----------~~~---~~~pf~r~ty~eA~~~---yG 298 (706)
T PRK12820 237 EDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IG----------GIA---LPRPFPRMPYAEAMDT---TG 298 (706)
T ss_pred CCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hc----------CcC---CCCCceEEEHHHHHHH---hC
Confidence 99999776 9999999999999999999999999999985 11 122 2469999999999986 69
Q ss_pred CCCCCCCC------------------cc-------------c-C--CCC-----CC-c----------------------
Q psy8087 310 IRKPDNTE------------------YE-------------F-G--EDI-----PE-M---------------------- 327 (658)
Q Consensus 310 ~~~~~~~~------------------~~-------------~-g--~~l-----~~-~---------------------- 327 (658)
.|+||++. +. . | ..+ +. +
T Consensus 299 ~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~ 378 (706)
T PRK12820 299 SDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGG 378 (706)
T ss_pred CCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 89888651 00 0 0 000 00 0
Q ss_pred ---------hhh------------------------------hhh-------cc-------cCCcEEEEeCCC-------
Q psy8087 328 ---------PER------------------------------KMT-------DQ-------INRPIMLCRFPA------- 347 (658)
Q Consensus 328 ---------~e~------------------------------~l~-------~~-------~~~p~fi~~~P~------- 347 (658)
.+. .|+ +. .-.++||+|||.
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~ 458 (706)
T PRK12820 379 LDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDG 458 (706)
T ss_pred cCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCC
Confidence 000 000 00 023689999997
Q ss_pred ----CCCCCCCccCCC--------Cc--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHH
Q psy8087 348 ----DIKSFYMSKCPE--------NP--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTD 409 (658)
Q Consensus 348 ----~~~pfy~~~~~~--------~~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~ 409 (658)
.|+||+| ++++ || ..+.+|||++||+ ||+|||+|+||++.|++.|+..|++++ .|.+||+
T Consensus 459 ~~~a~HHPFT~-p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~ 536 (706)
T PRK12820 459 GVTSSHHPFTA-PDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLR 536 (706)
T ss_pred CeeeeeCCCCC-cCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6899966 4433 22 2468999999998 999999999999999999999999875 3789999
Q ss_pred HhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhhh
Q psy8087 410 QRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 410 a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|++||+|||||+|+|+|||+|+|+|.+||||||+||+...-
T Consensus 537 a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 537 AFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred HHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCC
Confidence 99999999999999999999999999999999999965433
No 29
>KOG0554|consensus
Probab=100.00 E-value=2.4e-75 Score=601.34 Aligned_cols=371 Identities=29% Similarity=0.469 Sum_probs=314.9
Q ss_pred CccCCcEEEEeEEeecceecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCc--cceE
Q psy8087 66 AGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEEN--MKVQ 141 (658)
Q Consensus 66 ~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~--~d~~ 141 (658)
....|++++|.|||.++|+.++ ++|++|.||++. +|||++.+.. ..+..|++|.++|.+.-...+. +++-
T Consensus 16 ~~~~g~~~~i~GWvKsvr~~~~-~~Fl~i~DGs~~~~lQvVv~~~~~-----q~la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 16 HPRAGDTISIGGWVKSVRKLKK-VTFLDINDGSCPSPLQVVVDSEQS-----QLLATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCCceeecchhhhcccccc-eEEEEecCCCCCcceEEEechHHh-----hhccccceEEEEeeEEeccchheeeeee
Confidence 3467899999999999998886 899999999984 9999987432 3689999999999998764332 1111
Q ss_pred ---------ecC--C--C----------ceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCcc
Q psy8087 142 ---------LIH--P--S----------SYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGST 189 (658)
Q Consensus 142 ---------l~~--p--~----------~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~ 189 (658)
+++ | + .-||..|++..++ .++++||.+++|++|+||||+.++||||++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 111 1 1 1255556554433 488999999999999999999999999999
Q ss_pred ceee--------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC-HHHHHHHH
Q psy8087 190 LFSL--------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKL 260 (658)
Q Consensus 190 ~F~~--------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~~~m~~~ 260 (658)
.|.+ +|||+++||++|.|||++.+++++.|||.+||+||+|+++++|||.||||+|.|+||++ ++|+|.++
T Consensus 170 ~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~ 249 (446)
T KOG0554|consen 170 VFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCA 249 (446)
T ss_pred eEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9953 58999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHHHHHHHHHhhcccccccc----cCCC----C-CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhh
Q psy8087 261 EDLICDTVDRVMATHGDLVRQ----MNPN----F-EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERK 331 (658)
Q Consensus 261 e~li~~i~~~~~~~~~~~~~~----~~~~----~-~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~ 331 (658)
|.+++++++.+.+++.+..+. ..+. + ...+.+|.+|||.||+++|++...+ ......+||.+|.+++|++
T Consensus 250 e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~-~fk~~~kwG~~l~~ehe~y 328 (446)
T KOG0554|consen 250 EAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTK-KFKTPPKWGIDLSTEHEKY 328 (446)
T ss_pred HHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhccc-ccccCcccccccchhhHHH
Confidence 999999999999987543321 1111 1 1234568899999999999887642 1223578999999999999
Q ss_pred hhccc-CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHH
Q psy8087 332 MTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQ 410 (658)
Q Consensus 332 l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a 410 (658)
|.+.+ +.|+||+|||..++||||+.+.+++ .+.+|||++||+|||+|||+|+.+ .+++++.|..++.++|||+.
T Consensus 329 L~~~~~~~PVfV~dYP~~iKpFYMr~n~~~~-tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eWYldL 403 (446)
T KOG0554|consen 329 LVEECFKKPVFVTDYPKGIKPFYMRLNDDGK-TVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEWYLDL 403 (446)
T ss_pred HHHHhcCCCEEEEeccccccceEEEecCCCC-eeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccceehhh
Confidence 98875 6899999999999999999986666 678999999999999999999999 67888999999999999999
Q ss_pred hhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 411 ~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++||.+||||||||+||++.+++|.+||||||+||.-+
T Consensus 404 RryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~ 441 (446)
T KOG0554|consen 404 RRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYP 441 (446)
T ss_pred hhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCc
Confidence 99999999999999999999999999999999998543
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=1.3e-75 Score=624.04 Aligned_cols=302 Identities=25% Similarity=0.454 Sum_probs=271.2
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC-------ccceeeccCCccee
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG-------STLFSLNFFGEPAY 201 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~-------~~~F~~~~~~~~~~ 201 (658)
++.+++| |++++|++..++ +++|+||.++||+||+||+|++++++|. ...|+++|||+++|
T Consensus 10 ~~~~~~~---r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 10 YEEFLRM---SWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYY 86 (335)
T ss_pred hhhhhhh---HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCcee
Confidence 6778888 999999876554 6999999999999999999988766643 22467889999999
Q ss_pred eccCHHHHHHHhcccCCcEEEEeeeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy8087 202 LTQSSQLYLETCLPALGDVYCIAQSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279 (658)
Q Consensus 202 L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~ 279 (658)
|++|||||||++++|++||||||||||||++++ +||||||||||||++|+||+|+|+++|+||++++..+.+++...+
T Consensus 87 L~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i 166 (335)
T PRK06462 87 LADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDEL 166 (335)
T ss_pred eccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999998888889999999999999999987 799999999999999999999999999999999999988876555
Q ss_pred cccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCC
Q psy8087 280 RQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPE 359 (658)
Q Consensus 280 ~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~ 359 (658)
..++..+..++.||+||||.||++++++.|.+.. .+++++..+|+++++.++.|+||+|||.+++|||++.+++
T Consensus 167 ~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~~------~~~~l~~~~E~~l~~~~~~p~fi~~yP~~~~pfy~~~~~~ 240 (335)
T PRK06462 167 EFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGI------DLEELGSEGEKSLSEHFEEPFWIIDIPKGSREFYDREDPE 240 (335)
T ss_pred HhcCCccccCCCCCeEEEHHHHHHHHHhcCCCcc------hHHHHhHHHHHHHHHHhCCCEEEECCChhhCCcccccCCC
Confidence 4444433334579999999999999988876532 3678889999999999999999999999999999999889
Q ss_pred CcCceeEEEEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCc
Q psy8087 360 NPALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHV 438 (658)
Q Consensus 360 ~~~~~~~fdL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~I 438 (658)
+|++++|||||++ |+|||++|++|+|+++++.++++++|++++.|+|||+|++||||||||||||||||+|+++|.+||
T Consensus 241 ~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~I 320 (335)
T PRK06462 241 RPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHI 320 (335)
T ss_pred CCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCch
Confidence 9999999999997 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHh
Q psy8087 439 RDKYQLIAKA 448 (658)
Q Consensus 439 rdvi~f~~k~ 448 (658)
|||++||..+
T Consensus 321 rdv~~FPr~~ 330 (335)
T PRK06462 321 REVQPFPRVP 330 (335)
T ss_pred heeeeccCCC
Confidence 9999998654
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=3.3e-74 Score=616.50 Aligned_cols=300 Identities=35% Similarity=0.619 Sum_probs=248.2
Q ss_pred ceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeec-----cCCcceeecc
Q psy8087 139 KVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN-----FFGEPAYLTQ 204 (658)
Q Consensus 139 d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~-----~~~~~~~L~~ 204 (658)
|+++++ ||+|+|++..++ ++||+||.++||+||+||+|++++++||+++|.++ |||.++||++
T Consensus 3 e~~~~~---r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 3 ETRLDN---RHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp HHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred hhhhhc---cceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 456777 999999987655 69999999999999999999999999999999998 9999999999
Q ss_pred CHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q psy8087 205 SSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283 (658)
Q Consensus 205 Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~ 283 (658)
|||||||++++ |++||||||||||||+++++|||||||||||||+|+|++++|+++|+||+++++.+.+..... .++
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~--~~~ 157 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL--SLN 157 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc--ccc
Confidence 99999999998 699999999999999998999999999999999999999999999999999999997553222 113
Q ss_pred CCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC-----------CcccCCCCCCchhhhhh-cccCCcEEEEeCCCCCCC
Q psy8087 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT-----------EYEFGEDIPEMPERKMT-DQINRPIMLCRFPADIKS 351 (658)
Q Consensus 284 ~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~-----------~~~~g~~l~~~~e~~l~-~~~~~p~fi~~~P~~~~p 351 (658)
.++ ..||++++|.||++++...+.+..... ...+|.++....|+.|. .....|+||+|||..++|
T Consensus 158 ~~~---~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~fI~~~P~~~~p 234 (335)
T PF00152_consen 158 IDL---PKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPVFITDYPAEQSP 234 (335)
T ss_dssp EES---SSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEEEEEEEBGGGST
T ss_pred ccc---cCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcEEEEecccccCc
Confidence 332 367999999999999877654433200 01124456666777554 356889999999999999
Q ss_pred CCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhH
Q psy8087 352 FYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 352 fy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
||++.+++++++++|||||++| +||||||+|+|||++|++||++++++++. ++|||+|+++|||||||||||+||
T Consensus 235 f~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eR 313 (335)
T PF00152_consen 235 FYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLER 313 (335)
T ss_dssp TTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHH
T ss_pred ccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHH
Confidence 9887776666999999999999 59999999999999999999999988777 999999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHH
Q psy8087 428 VLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k 447 (658)
|+|+++|.+|||||++||..
T Consensus 314 Lvm~l~g~~~Irdv~~FPr~ 333 (335)
T PF00152_consen 314 LVMLLLGLKNIRDVIPFPRD 333 (335)
T ss_dssp HHHHHHT-SSGGGGSSS-CB
T ss_pred HHHHHcCCCcHHheecCCCC
Confidence 99999999999999999853
No 32
>KOG2411|consensus
Probab=100.00 E-value=1.8e-70 Score=575.81 Aligned_cols=379 Identities=22% Similarity=0.285 Sum_probs=297.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh--hhhhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT--EHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~--~~~~~l~~es~V~v~G~l~ 131 (658)
++.++++... .+|+.|.++|||...|++ |.+.|..|||.+|.||+.++.+.... .....++.||+|.|.|++.
T Consensus 35 t~~~~el~~~----~vg~kv~l~GWl~~~~~~-k~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv 109 (628)
T KOG2411|consen 35 TSLCGELSVN----DVGKKVVLCGWLELHRVH-KMLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVV 109 (628)
T ss_pred hccchhhccC----ccCCEEEEeeeeeeeecc-ccceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEe
Confidence 4455566443 789999999999999988 57999999999999999998775421 1123589999999999998
Q ss_pred eCCCCc---------cceEe-----cC-------------------------CCceeEEeecCCccc---------CchH
Q psy8087 132 KVPEEN---------MKVQL-----IH-------------------------PSSYAIVWLGDLKQG---------GYPP 163 (658)
Q Consensus 132 ~~p~~~---------~d~~l-----~~-------------------------p~~R~l~lr~~~~~~---------~~iR 163 (658)
..|... +|+.. .| +..||||||.+.++. ..||
T Consensus 110 ~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR 189 (628)
T KOG2411|consen 110 SRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIR 189 (628)
T ss_pred cccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 775321 11110 01 135999999988765 4899
Q ss_pred HHhhhC-CcEEEcCCccccccCCCCccce-eeccC-CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcc
Q psy8087 164 EVSLAN-GIAKVTPPTLVQTQVEGGSTLF-SLNFF-GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLA 239 (658)
Q Consensus 164 ~fl~~~-gF~EV~TPiL~~~~~eG~~~~F-~~~~~-~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~ 239 (658)
+||.++ ||+||+||+|.+.++|||++.. ++.-- |++|.|.||||+|||+||+ |++|||||++|||+|+++.+|+ |
T Consensus 190 ~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-P 268 (628)
T KOG2411|consen 190 RYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-P 268 (628)
T ss_pred HHHhhhcCeeeccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccC-C
Confidence 999875 7999999999999997776633 33322 8999999999999999998 7999999999999999999999 8
Q ss_pred eeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc-
Q psy8087 240 EYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY- 318 (658)
Q Consensus 240 EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~- 318 (658)
||||+|+||+|.|.+|||+++|+||+++|....+. .+..||+||||.|||.. +|+|+||.++.
T Consensus 269 EFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~-------------~l~~PF~riTY~~Am~~---YG~DKPD~Rf~l 332 (628)
T KOG2411|consen 269 EFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI-------------QLPVPFPRITYADAMDK---YGSDKPDTRFPL 332 (628)
T ss_pred cceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC-------------CCCCCcccccHHHHHHH---hCCCCCcccCCc
Confidence 99999999999999999999999999999876542 13579999999999986 79999986420
Q ss_pred -------------------------------------------------------------------ccCCCCCCc-hh-
Q psy8087 319 -------------------------------------------------------------------EFGEDIPEM-PE- 329 (658)
Q Consensus 319 -------------------------------------------------------------------~~g~~l~~~-~e- 329 (658)
.|-+.+..+ .|
T Consensus 333 ~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~ 412 (628)
T KOG2411|consen 333 KLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEA 412 (628)
T ss_pred EecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccch
Confidence 000000000 00
Q ss_pred --------------------------------h-------hhhccc-----CCcEEEEeCCC-------------CCCCC
Q psy8087 330 --------------------------------R-------KMTDQI-----NRPIMLCRFPA-------------DIKSF 352 (658)
Q Consensus 330 --------------------------------~-------~l~~~~-----~~p~fi~~~P~-------------~~~pf 352 (658)
+ .+...+ ....||+|||. .++||
T Consensus 413 ~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPF 492 (628)
T KOG2411|consen 413 VAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPF 492 (628)
T ss_pred HHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCC
Confidence 0 000111 13579999995 48899
Q ss_pred CCccCCCCc---------CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-CCCCCCC--cchHHHhhcCCCCccc
Q psy8087 353 YMSKCPENP---------ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-GIDPAPY--YWYTDQRKYGSTPHGG 420 (658)
Q Consensus 353 y~~~~~~~~---------~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-g~~~~~~--~~yl~a~~~G~pP~gG 420 (658)
+.++++|- -...+|||++||+ ||+|||.|+||++.|+..|+.. +++.+.+ ++.|+|+.+|+|||||
T Consensus 493 -TaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGG 570 (628)
T KOG2411|consen 493 -TAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGG 570 (628)
T ss_pred -CCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCc
Confidence 45666542 2467999999998 9999999999999999999975 4444334 4899999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
+++|+|||+|+|||..||||||+||+....++....
T Consensus 571 iAlGlDRlvaml~~a~sIRDVIAFPKt~~G~Dlls~ 606 (628)
T KOG2411|consen 571 IALGLDRLVAMLTGAPSIRDVIAFPKTTTGADLLSN 606 (628)
T ss_pred eeecHHHHHHHHcCCCchheeeeccccCCccccccC
Confidence 999999999999999999999999987777665543
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=4.6e-70 Score=574.58 Aligned_cols=262 Identities=21% Similarity=0.378 Sum_probs=228.9
Q ss_pred CchHHHhhhCCcEEEcCCccccc-cCCCCccceeeccCC-----cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT-QVEGGSTLFSLNFFG-----EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~-~~eG~~~~F~~~~~~-----~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
+++|+||.++||+||+||+|+++ ..++++++|+++||+ +++||+||||||||++++ |++||||||||||||++
T Consensus 9 ~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 9 AAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER 88 (304)
T ss_pred HHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEcCceeCCCC
Confidence 68999999999999999999876 466788999998876 699999999999998877 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
+ +||||||||||||++|.||+|+|+++|+||++++.. ++.||++|||.||++.+ .|++.
T Consensus 89 ~-~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~------------------~~~~~~~it~~ea~~~~--~~~~~ 147 (304)
T TIGR00462 89 G-RRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD------------------PFAPWERLSYQEAFLRY--AGIDP 147 (304)
T ss_pred C-CCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh------------------cCCCcEEEEHHHHHHHH--hCCCc
Confidence 5 699999999999999999999999999999999874 13699999999998643 23322
Q ss_pred CCC-------------CCcccCCCCCCchhhhhh----ccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCC
Q psy8087 313 PDN-------------TEYEFGEDIPEMPERKMT----DQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPN 373 (658)
Q Consensus 313 ~~~-------------~~~~~g~~l~~~~e~~l~----~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G 373 (658)
... ....++.++++++|++++ +++ ++|+||+|||.+++|| ++.+++||++++|||||++|
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~-~~~~~~~~~~~~rfdl~~~G 226 (304)
T TIGR00462 148 LTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAAL-ARISPDDPRVAERFELYIKG 226 (304)
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcC-ccccCCCCCeeEEEEEEECC
Confidence 110 012345677777777664 444 6799999999999999 57888999999999999999
Q ss_pred cceeeeceeccCCHHHHHHHHHH-------cCCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 374 VGEVIGGSMRIWDPEELLAGYKR-------EGIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 374 ~~Ei~~G~~r~~d~~~~~~~~~~-------~g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
+ ||+|||+|+|||.+|++||++ .|+++..+ +|||+|++||||||||||||||||+|+++|.+||||||+|
T Consensus 227 ~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 227 L-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred E-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 8 999999999999999999977 58887777 7899999999999999999999999999999999999987
No 34
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.1e-69 Score=577.65 Aligned_cols=279 Identities=23% Similarity=0.375 Sum_probs=239.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
++||+||.++||+||+||+|+++.+++++++|.+ ++|+.++||+||||||||++++ |++|||+||||||||+++ +|
T Consensus 16 ~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~-~r 94 (329)
T cd00775 16 SYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGID-LT 94 (329)
T ss_pred HHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCCC-CC
Confidence 6999999999999999999986655555788966 7899999999999999999986 899999999999999996 69
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT 316 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~ 316 (658)
||||||||||||+|+|++|+|+++|+||+++++.+.+... +...+.++ ..+.||+|+||.||++.+ .|++.....
T Consensus 95 Hl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~--~~~~~~~~-~~~~pf~rity~eA~~~~--~g~~~~~~~ 169 (329)
T cd00775 95 HNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTK--IEYGGKEL-DFTPPFKRVTMVDALKEK--TGIDFPELD 169 (329)
T ss_pred CCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCce--eecCCccc-cCCCCceEEEHHHHHHHH--hCCCccccc
Confidence 9999999999999999999999999999999998876532 11122111 124699999999999975 465432100
Q ss_pred ---------------------CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcc
Q psy8087 317 ---------------------EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVG 375 (658)
Q Consensus 317 ---------------------~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~ 375 (658)
...|+..++.++++++++++++|+||+|||++++|| ++.+++||++++|||||++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~~~p~fi~~yP~~~~~f-~~~~~~~~~~~~rfdl~~~G~- 247 (329)
T cd00775 170 LEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPL-AKRHRSNPGLTERFELFICGK- 247 (329)
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhccccCCCEEEECCChHhCcC-cCcCCCCCCeeEEEEeEECCE-
Confidence 113455566777888999999999999999999999 567788999999999999998
Q ss_pred eeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 376 EVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 376 Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
||+|||+|+|||.+|+++|+++ +.+++. ++|||+|++||||||||||||+|||+|+++|.+|||||++||.
T Consensus 248 Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~ 326 (329)
T cd00775 248 EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPA 326 (329)
T ss_pred EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCC
Confidence 9999999999999999999874 666643 6899999999999999999999999999999999999999963
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=3.1e-68 Score=550.81 Aligned_cols=251 Identities=26% Similarity=0.464 Sum_probs=230.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccC--CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFF--GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~--~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+++|+||.++||+||+||+|+++.+|+++++|+++|+ |.++||++|||+|+|++++ |++|||+||||||+|+ .+.+
T Consensus 9 ~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~-~~~~ 87 (269)
T cd00669 9 KAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRNED-LRAR 87 (269)
T ss_pred HHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeCCC-CCCC
Confidence 5899999999999999999998888888999999888 9999999999999999886 7999999999999995 5779
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT 316 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~ 316 (658)
|++||||||+||+|+|++|+|+++|+||+++++.+.+.+...+..... .++.||+||||.||++++.
T Consensus 88 hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~---~~~~~~~rit~~ea~~~~~---------- 154 (269)
T cd00669 88 HQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELE---DFGLPFPRLTYREALERYG---------- 154 (269)
T ss_pred cccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccc---ccCCCceEeeHHHHHHHhC----------
Confidence 999999999999999999999999999999999998765443332222 2457999999999998751
Q ss_pred CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHH
Q psy8087 317 EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKR 396 (658)
Q Consensus 317 ~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~ 396 (658)
.|+||+|||...+|||++.++++|++++||||+++|+ ||+|||+|+||+++|+++|++
T Consensus 155 ---------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~ 212 (269)
T cd00669 155 ---------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQE 212 (269)
T ss_pred ---------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHH
Confidence 5899999999999999999888999999999999996 999999999999999999999
Q ss_pred cCCCCC----CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 397 EGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 397 ~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
++++++ .|+|||+|++||+|||||||||||||+|+++|.+|||||++||.
T Consensus 213 ~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr 266 (269)
T cd00669 213 QGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPK 266 (269)
T ss_pred hCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCC
Confidence 999988 79999999999999999999999999999999999999999984
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=2.2e-63 Score=524.35 Aligned_cols=258 Identities=21% Similarity=0.327 Sum_probs=217.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-ccceeeccC------CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSLNFF------GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~~~~------~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||+||.++||+||+||+|+.....|+ ..+|.++|+ |..+||+||||+|+|++++ |++|||+||||||||+
T Consensus 13 ~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~ 92 (306)
T PRK09350 13 AEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEE 92 (306)
T ss_pred HHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccceEEecceeecCC
Confidence 6899999999999999999975544443 457877777 7899999999999999887 7999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHH------
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYL------ 305 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l------ 305 (658)
+ +.||+|||||||||++|+|++|+|+++|+||++++.. .||+++||.||++.+
T Consensus 93 ~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--------------------~~~~~i~~~eaf~~~~g~~~~ 151 (306)
T PRK09350 93 A-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--------------------EPAESLSYQQAFLRYLGIDPL 151 (306)
T ss_pred C-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc--------------------CCceEEEHHHHHHHHhCCCCC
Confidence 9 7799999999999999999999999999999988641 478999999988643
Q ss_pred -----------HHcCC-CCCCCCCcccCCCCCCchhhhhhcccC--CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEe
Q psy8087 306 -----------RKHEI-RKPDNTEYEFGEDIPEMPERKMTDQIN--RPIMLCRFPADIKSFYMSKCPENPALTESVDVLF 371 (658)
Q Consensus 306 -----------~~~g~-~~~~~~~~~~g~~l~~~~e~~l~~~~~--~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~ 371 (658)
.+.|+ +... ....|+..++.++..++++.++ .|+||+|||.+++|| ++++++||++++|||||+
T Consensus 152 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~-a~~~~~~~~~~~rfdl~i 229 (306)
T PRK09350 152 SADKTQLREVAAKLGLSNIAD-EEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAAL-AKISTEDHRVAERFEVYF 229 (306)
T ss_pred cCCHHHHHHHHHHcCCCCcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcc-ccccCCCCCeeEEEEEEE
Confidence 22232 0000 0112223333444566777764 599999999999998 678889999999999999
Q ss_pred CCcceeeeceeccCCHHHHHHHHHH-------cCCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 372 PNVGEVIGGSMRIWDPEELLAGYKR-------EGIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 372 ~G~~Ei~~G~~r~~d~~~~~~~~~~-------~g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
+|+ ||+|||+|+|||++|++||++ .|+++..+ +|||+|++||||||||||||||||+|+++|.+|||||
T Consensus 230 ~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 230 KGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 998 999999999999999999985 57777777 5799999999999999999999999999999999997
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=1.2e-62 Score=511.90 Aligned_cols=257 Identities=27% Similarity=0.452 Sum_probs=210.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccC---CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFF---GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTR 235 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~---~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~ 235 (658)
++||+||.++||+||+||+|++++++|++. |.+.++ +..+||+||||||||++++ |++|||+||||||+|++++.
T Consensus 9 ~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~ 87 (280)
T cd00777 9 KAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRAD 87 (280)
T ss_pred HHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCC
Confidence 689999999999999999999888877654 766664 4567799999999999886 79999999999999999986
Q ss_pred cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCC
Q psy8087 236 RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDN 315 (658)
Q Consensus 236 rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~ 315 (658)
|| +||||||||++|+|++|+|+++|+||++++..+.+. ..+.||+||||.||++.+ |++
T Consensus 88 r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~-------------~~~~p~~rity~eA~~~~---~~~---- 146 (280)
T cd00777 88 RQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV-------------ELTTPFPRMTYAEAMERY---GFK---- 146 (280)
T ss_pred cc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC-------------CCCCCCceeeHHHHHHHh---CCC----
Confidence 66 599999999999999999999999999999888653 124799999999999863 432
Q ss_pred CCcccCCCCCCchhhhhhcccCCcEEEEe-CCCCC---CCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHH
Q psy8087 316 TEYEFGEDIPEMPERKMTDQINRPIMLCR-FPADI---KSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELL 391 (658)
Q Consensus 316 ~~~~~g~~l~~~~e~~l~~~~~~p~fi~~-~P~~~---~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~ 391 (658)
..|+.++... +...+ ..+++++++ ||... .|+ ++.++++ ++++|||||++|+ ||+|||+|+|||++|+
T Consensus 147 --~~~~~d~~~~-~~~~~--~~~~~~~~~pf~~~~~~~~~~-~~~~~~~-~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~ 218 (280)
T cd00777 147 --FLWIVDFPLF-EWDEE--EGRLVSAHHPFTAPKEEDLDL-LEKDPED-ARAQAYDLVLNGV-ELGGGSIRIHDPDIQE 218 (280)
T ss_pred --CccccCCccc-CChhH--HHHHHHHhCCCcCCCcccchh-hhcCCcc-CeeEEEEEEeCCE-EEccCEEEcCCHHHHH
Confidence 2344443311 10001 122344444 44322 223 4455555 7999999999997 9999999999999999
Q ss_pred HHHHHcCCCC----CCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 392 AGYKREGIDP----APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 392 ~~~~~~g~~~----~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
+||+++|+++ +.|+|||+|++||||||||||||||||+|++||.+|||||++||.
T Consensus 219 ~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr 277 (280)
T cd00777 219 KVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPK 277 (280)
T ss_pred HHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCC
Confidence 9999999883 457999999999999999999999999999999999999999984
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-55 Score=439.03 Aligned_cols=262 Identities=18% Similarity=0.305 Sum_probs=218.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC-CccceeeccC------CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG-GSTLFSLNFF------GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG-~~~~F~~~~~------~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||.||.++||+||+||.|+.+.... .-.+|.++|+ ++++||+.|||+++|+|++ |-+++||||+||||++
T Consensus 24 ~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E 103 (322)
T COG2269 24 AAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEE 103 (322)
T ss_pred HHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcchhhhHHHhccc
Confidence 699999999999999999997553222 1346877776 3689999999999999998 8999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
. +.+|+|||||||||..+.||..+|+.+.+|++.++.. .++.++||.||+..+ .|+|
T Consensus 104 ~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~--------------------~~~E~ls~~eaF~r~--~gid 160 (322)
T COG2269 104 M-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC--------------------VEAERLSYQEAFLRY--LGID 160 (322)
T ss_pred c-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc--------------------CCcceeeHHHHHHHH--hCCC
Confidence 6 7799999999999999999999999999999988752 357899999999865 4555
Q ss_pred CCCC-----------------CCcccCCCCCCchhhhhhccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 312 KPDN-----------------TEYEFGEDIPEMPERKMTDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 312 ~~~~-----------------~~~~~g~~l~~~~e~~l~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
.... ...+|.+.+.-++-..+++++ ++|+||+|||...+.+ ++.++.||++++|||||+.
T Consensus 161 ~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaL-A~i~~~D~rVAERFElY~k 239 (322)
T COG2269 161 PLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAAL-AQISTGDPRVAERFELYYK 239 (322)
T ss_pred cccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHh-hccCCCCcchhhhhhheee
Confidence 4321 112222223333344566776 5799999999999998 9999999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc-------CCCCC-CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE-------GIDPA-PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~-------g~~~~-~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|+ ||+||+.|++|+.+|++||+.. |...- -+++||.|+.. ||||+|+++|||||+|+++|.++|.|||.|
T Consensus 240 Gi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f 317 (322)
T COG2269 240 GI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAF 317 (322)
T ss_pred ee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHHHHhhc
Confidence 99 9999999999999999999763 22211 26899999999 999999999999999999999999999999
Q ss_pred HHH
Q psy8087 445 IAK 447 (658)
Q Consensus 445 ~~k 447 (658)
|..
T Consensus 318 ~v~ 320 (322)
T COG2269 318 PVA 320 (322)
T ss_pred ccc
Confidence 753
No 39
>KOG0555|consensus
Probab=100.00 E-value=3.7e-34 Score=294.72 Aligned_cols=218 Identities=61% Similarity=0.959 Sum_probs=204.1
Q ss_pred hhhHHHHHhhhhhhhhhhhccchhHHHHHhhhhHHHHHHHHhHHHHHhcccCCCCCCCccceeecccCCccCCcEEEEEE
Q psy8087 440 DKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDGEKYRDKRVTIFG 519 (658)
Q Consensus 440 dvi~f~~k~~lk~~~K~~~~~~~k~~k~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~v~G 519 (658)
+---..+|++||+++|.+.++.+|+.|+.+++++.++++++++++++++.+++++|+|.++.++|-+...+.|++|+|.|
T Consensus 51 e~~e~~sk~~Lkk~~kg~~~~~~k~~k~~~~ea~~~ek~~~~le~a~ki~ised~slp~ak~iki~~s~~~r~qrVkv~g 130 (545)
T KOG0555|consen 51 EEYEPISKSALKKIKKGWVRECKKSAKASQKEAEASEKREKNLEEAKKITISEDKSLPAAKKIKIYDSTENRGQRVKVFG 130 (545)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHhhhcccccCCCCCchhheeeecccccccCceEEeeh
Confidence 33334689999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 520 WVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 520 wI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
|||++|++ |+++|++|||++|.+|||++++.++......|+.+|.|.|.|+++..|+||+++|+.||.++.|+|++.|+
T Consensus 131 WVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Ap 209 (545)
T KOG0555|consen 131 WVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAP 209 (545)
T ss_pred hhHhhhhc-CceEEEEEecCCceEEEEEcchhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccC
Confidence 99999999 79999999999999999999887765566789999999999999999999999999999999999999998
Q ss_pred CCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 600 AGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 600 ~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+...+..++..++++..++||||-+|....+.++++|++++++||+++.+.|++||.-|
T Consensus 210 ag~~~n~lne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPP 268 (545)
T KOG0555|consen 210 AGGFDNPLNEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPP 268 (545)
T ss_pred CCcccccccccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence 77677788899999999999999999999999999999999999999999999999876
No 40
>KOG1885|consensus
Probab=99.97 E-value=5.4e-31 Score=276.93 Aligned_cols=210 Identities=16% Similarity=0.220 Sum_probs=170.4
Q ss_pred HHHHHhhhhhhhhhhhccchhHHHHHhhhh-----------------HH---HHHHHHhHHHHHhcccCCCCC-------
Q psy8087 443 QLIAKAQLKKVSKLAARDNAKSESKAKKEE-----------------ED---AEKREKNLEEAKKIVLKEDPS------- 495 (658)
Q Consensus 443 ~f~~k~~lk~~~K~~~~~~~k~~k~~~k~~-----------------~~---~~~~~~~l~~~~~~~~~~~~~------- 495 (658)
.+.++..||+..++.+++..++++++.+.+ +. -+.|.+.+++.+.....|++.
T Consensus 6 ~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~s 85 (560)
T KOG1885|consen 6 EMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSIS 85 (560)
T ss_pred hhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhcccc
Confidence 456788888888887776555555433221 11 123555667777777777642
Q ss_pred CCc--cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc----ch-HHhccCCCCcEEEE
Q psy8087 496 LPP--AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC----QT-EHALLLSTESSVQF 568 (658)
Q Consensus 496 ~~~--~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~----~~-~~~~~L~~gs~V~V 568 (658)
++. ++|..+..++...+..|+|+||||++|.+|+||+|++|++++..||||++.+.. .| ..++.|++||+|+|
T Consensus 86 i~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~ 165 (560)
T KOG1885|consen 86 IPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGV 165 (560)
T ss_pred HHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEee
Confidence 111 566666666777788899999999999999999999999999999999997542 34 55677999999999
Q ss_pred EEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeech-hhHHHHHHHHHHHHHHHHHh
Q psy8087 569 RGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGE-NTSRVLLMRSVLLQALRAHF 647 (658)
Q Consensus 569 ~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~-~~~~ifr~Rs~i~~~iR~fL 647 (658)
+|.+ +++++|+++|.+.++.+|++|++ ++|....+..|.|+|+++|||||..| .++++|++|++|+.+||+||
T Consensus 166 ~G~p-----grt~~gELSi~~~~~~lLspcLh-~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfl 239 (560)
T KOG1885|consen 166 SGYP-----GRTKSGELSIIPNEIILLSPCLH-MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFL 239 (560)
T ss_pred ecCC-----CcCCCceEEEeecchheecchhc-cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 55668999999999999999986 67777778899999999999999995 89999999999999999999
Q ss_pred hcCCcEEecCC
Q psy8087 648 ADRNYTEVNIE 658 (658)
Q Consensus 648 ~~~gF~EVeTp 658 (658)
+++||+|||||
T Consensus 240 d~rgFlEVETP 250 (560)
T KOG1885|consen 240 DSRGFLEVETP 250 (560)
T ss_pred hhcCceEecch
Confidence 99999999998
No 41
>PLN02502 lysyl-tRNA synthetase
Probab=99.97 E-value=3.4e-30 Score=288.76 Aligned_cols=206 Identities=20% Similarity=0.215 Sum_probs=163.6
Q ss_pred HHhhhhhhhhhhhccchhHHHHHhhh------------------------hHHHHHHHHhHHHHHhcccCCCCCCCc---
Q psy8087 446 AKAQLKKVSKLAARDNAKSESKAKKE------------------------EEDAEKREKNLEEAKKIVLKEDPSLPP--- 498 (658)
Q Consensus 446 ~k~~lk~~~K~~~~~~~k~~k~~~k~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 498 (658)
+|+.+|+..|+.+++++|++|.+++. .++.+.|.++++++++.++.+++..-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp~~~~~~~ 88 (553)
T PLN02502 9 SKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPYKFDVTH 88 (553)
T ss_pred cHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 67889999988888776665544210 122345677778888888777763221
Q ss_pred ------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-----chHH-hccCCCCcEE
Q psy8087 499 ------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-----QTEH-ALLLSTESSV 566 (658)
Q Consensus 499 ------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-----~~~~-~~~L~~gs~V 566 (658)
.+|..+.......|++|+|+|||+++|.+| |++|++|||+++.||||++.+.. .+.. ...|++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV 167 (553)
T PLN02502 89 TAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIV 167 (553)
T ss_pred cHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEE
Confidence 123333333445689999999999999999 79999999999999999976421 1433 3469999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeee-chhhHHHHHHHHHHHHHHHH
Q psy8087 567 QFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIR-GENTSRVLLMRSVLLQALRA 645 (658)
Q Consensus 567 ~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~ 645 (658)
+|+|++.+++ +|++||.+++|+||++|.. ++|...++..+.++|+++|||||+ ++.++++|++||.|+++||+
T Consensus 168 ~V~G~~~~t~-----~gelel~~~~i~vLs~~l~-plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~ 241 (553)
T PLN02502 168 GVTGTPGKTK-----KGELSIFPTSFEVLTKCLL-MLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRR 241 (553)
T ss_pred EEEEEEEecC-----CCCEEEEEeEEEEEeccCC-CCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998765 7899999999999999973 556555667899999999999997 57999999999999999999
Q ss_pred HhhcCCcEEecCC
Q psy8087 646 HFADRNYTEVNIE 658 (658)
Q Consensus 646 fL~~~gF~EVeTp 658 (658)
||+++||+||+||
T Consensus 242 fl~~~gF~EVeTP 254 (553)
T PLN02502 242 FLDDRGFLEVETP 254 (553)
T ss_pred HHHHCCCEEEECC
Confidence 9999999999999
No 42
>PLN02850 aspartate-tRNA ligase
Probab=99.97 E-value=4.9e-30 Score=287.17 Aligned_cols=160 Identities=23% Similarity=0.260 Sum_probs=136.1
Q ss_pred CccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc----cch-HHhccCCCCcEEEEEE
Q psy8087 497 PPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL----CQT-EHALLLSTESSVQFRG 570 (658)
Q Consensus 497 ~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~----~~~-~~~~~L~~gs~V~V~G 570 (658)
+..+|+++.++ ..+.|++|+|+|||+++|.+| +++|++|||++++||||+.... ..+ +++..|+.||+|.|+|
T Consensus 65 ~~~~~~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G 143 (530)
T PLN02850 65 TGREWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEG 143 (530)
T ss_pred CCceEeEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEE
Confidence 34567888876 567899999999999999999 5999999999999999997542 123 6778999999999999
Q ss_pred EEEecCCC-CCCCCceEEEEEEEEEEecCCCCCCCcccCC-------------------CCChhhhcccceeeeechhhH
Q psy8087 571 RIEKVPEG-KSAPGGHELKVDYWEVVGLAPAGGADAILNE-------------------EALPDVQLDNRHIMIRGENTS 630 (658)
Q Consensus 571 ~v~~~~~~-~~~~g~~El~~~~i~vls~~~~~~~~~~~~~-------------------~~~~e~r~~~R~LdLR~~~~~ 630 (658)
+|+.++.+ +++++++||++++++|||+|.. ++|....+ ..+.++|++|||||||++.++
T Consensus 144 ~v~~~~~~~~~~t~~~El~~~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~q 222 (530)
T PLN02850 144 VVSVPKKPVKGTTQQVEIQVRKIYCVSKALA-TLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQ 222 (530)
T ss_pred EEEccCcCCCCCCccEEEEEeEEEEEeCCCC-CCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHH
Confidence 99865433 5667899999999999999963 34433221 245799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||+||.|+++||+||.++||+||+||
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP 250 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTP 250 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCC
Confidence 9999999999999999999999999999
No 43
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=99.97 E-value=6.8e-30 Score=286.13 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=135.0
Q ss_pred CccceeecccCC-cc-CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cc-hHHhccCCCCcEEEEEE
Q psy8087 497 PPAVRIKIKDGE-KY-RDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQ-TEHALLLSTESSVQFRG 570 (658)
Q Consensus 497 ~~~~~~~i~~~~-~~-~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~-~~~~~~L~~gs~V~V~G 570 (658)
+..+|++|+++. .+ .|++|+|+|||+++|.+| |++|++|||+++.||||++... .. .+++..|+.||+|.|+|
T Consensus 61 ~~~~~~~i~~l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G 139 (550)
T PTZ00401 61 KSRTFIPVAVLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEA 139 (550)
T ss_pred CCCceEEHHHCCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEE
Confidence 446788888873 34 699999999999999999 6999999999999999996432 22 36778899999999999
Q ss_pred EEEecCCC--CCCCCceEEEEEEEEEEecCCCCCCCcccCC----------CCChhhhcccceeeeechhhHHHHHHHHH
Q psy8087 571 RIEKVPEG--KSAPGGHELKVDYWEVVGLAPAGGADAILNE----------EALPDVQLDNRHIMIRGENTSRVLLMRSV 638 (658)
Q Consensus 571 ~v~~~~~~--~~~~g~~El~~~~i~vls~~~~~~~~~~~~~----------~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~ 638 (658)
+|+.++.+ ...+|++||++++++|||+|+. ++|....+ ..+.++|+++||||||++.++++|++||.
T Consensus 140 ~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~ 218 (550)
T PTZ00401 140 TVCKVEQPITSTSHSDIELKVKKIHTVTESLR-TLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSR 218 (550)
T ss_pred EEEecCccCCCCCCccEEEEeeEEEEEeCCCC-CCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99986433 3456899999999999999963 34433322 13689999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEecCC
Q psy8087 639 LLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 639 i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++||+||.++||+||+||
T Consensus 219 i~~~~R~fl~~~gFiEV~TP 238 (550)
T PTZ00401 219 VCQYFRQFLIDSDFCEIHSP 238 (550)
T ss_pred HHHHHHHHHHHCCCEEEeCC
Confidence 99999999999999999999
No 44
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-29 Score=267.65 Aligned_cols=148 Identities=29% Similarity=0.460 Sum_probs=133.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC-c-cchHHhccCCCCcEEEEEEEEEecCCC----CCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI-L-CQTEHALLLSTESSVQFRGRIEKVPEG----KSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~-~-~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~ 581 (658)
..+.|++|+++||||++|++| +++|++|||.+|.+|||++.+ + ..++.+..|+.|++|.|+|+|..++++ +.+
T Consensus 11 ~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~ 89 (585)
T COG0173 11 ESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLP 89 (585)
T ss_pred HHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCC
Confidence 568899999999999999999 699999999999999999984 2 235788899999999999999999764 467
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|++||.+++++|||.|.. +|+...+ ....++|++|||||||.+.+++.+++||+|+.++|+||+++||+|||||
T Consensus 90 TGeiEv~a~~i~vln~s~~--lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETP 166 (585)
T COG0173 90 TGEIEVLAEEIEVLNASKT--LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETP 166 (585)
T ss_pred cceEEEEeeeEEEEecCCC--CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecC
Confidence 8999999999999999864 4444444 5788999999999999999999999999999999999999999999999
No 45
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4.3e-28 Score=270.46 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCcc---------ceeecccCC-ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPPA---------VRIKIKDGE-KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~i~~~~-~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
++.+.|.++|+++++.++.++|..... ++..+...+ ...+++|+|+|||+++|.+| |++|++|||++|.
T Consensus 5 ~~~~~r~~k~~~~~~~g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~ 83 (491)
T PRK00484 5 EQIAVRREKLAELREQGIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGR 83 (491)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCcc
Confidence 356778889999999888887642221 111111111 12247899999999999999 7999999999999
Q ss_pred EEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhccc
Q psy8087 543 IQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDN 619 (658)
Q Consensus 543 iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~ 619 (658)
||||++++.. .++.+..|+.||+|+|+|+|.+++ +|++||.+++++||++|.. ++|...++..+.++|+++
T Consensus 84 iQ~v~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~t~-----~ge~el~~~~~~vls~~~~-plP~~~~~~~~~~~r~r~ 157 (491)
T PRK00484 84 IQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFKTK-----TGELSVKATELTLLTKSLR-PLPDKFHGLTDVETRYRQ 157 (491)
T ss_pred EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-----CCcEEEEEeEEEEEeccCC-CCCcccccccchhhhccc
Confidence 9999986532 245566799999999999998765 7899999999999999963 456555667789999999
Q ss_pred ceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 620 RHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 620 R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||||||+ +.++++|++||+|+++||+||+++||+||+||
T Consensus 158 R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTP 197 (491)
T PRK00484 158 RYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETP 197 (491)
T ss_pred eeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999985 79999999999999999999999999999999
No 46
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=5.2e-28 Score=269.81 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy8087 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG 539 (658)
Q Consensus 470 k~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~ 539 (658)
+..++.+.|.++++++++.++ |++..-. .+|..+... ....|++|+|+|||+++|.+| |++|++|+|+
T Consensus 14 ~~~~~~~~r~~k~~~l~~~g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~ 91 (505)
T PRK12445 14 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 91 (505)
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeC
Confidence 344567788889999998877 7763211 122222111 123478899999999999998 7999999999
Q ss_pred CEEEEEEEcCCcc---ch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhh
Q psy8087 540 SGFIQCVLADILC---QT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDV 615 (658)
Q Consensus 540 ~~~iQvv~~~~~~---~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~ 615 (658)
+|.||||++++.. .+ ..+..|+.||+|+|+|++.+++ +|++||.++++++||+|.. |+|...++..+.++
T Consensus 92 ~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~-----~gelel~~~~~~llsk~~~-plP~~~~~~~d~e~ 165 (505)
T PRK12445 92 GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----TGELSIHCTELRLLTKALR-PLPDKFHGLQDQEV 165 (505)
T ss_pred CccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecC-----CCcEEEEEeEEEEEecCCC-CCCcccccccChhh
Confidence 9999999986431 23 2456799999999999998765 7999999999999999974 56666667789999
Q ss_pred hcccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 616 QLDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 616 r~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++||||||+ +..+++|++||+|+++||+||+++||+||+||
T Consensus 166 r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTP 209 (505)
T PRK12445 166 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETP 209 (505)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 99999999997 79999999999999999999999999999999
No 47
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=99.96 E-value=7e-28 Score=270.97 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=144.0
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
..+.+.|.++++++++.++.++|..-. ..|..+...+...++.|+|+|||+++|.+|+|++|++|+|.++.
T Consensus 83 ~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~ 162 (585)
T PTZ00417 83 RLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAK 162 (585)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCee
Confidence 445667888899998888888764221 11222221122235679999999999999978999999999999
Q ss_pred EEEEEcCCc-----cchH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhh
Q psy8087 543 IQCVLADIL-----CQTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQ 616 (658)
Q Consensus 543 iQvv~~~~~-----~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r 616 (658)
|||+++.+. ..+. ....|+.||+|+|+|++.++ ++|++||.++++++|++|.. ++|..+ +..+.++|
T Consensus 163 iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t-----~~gel~i~~~~i~llsk~l~-~lP~~~-g~~d~e~r 235 (585)
T PTZ00417 163 IQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKS-----KKGELSIFPKETIILSPCLH-MLPMKY-GLKDTEIR 235 (585)
T ss_pred EEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCC-----CCceEEEEEEEEEEEecCCC-CCCccc-CCCCcccc
Confidence 999998642 2232 24679999999999998554 48999999999999999964 445443 56789999
Q ss_pred cccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 617 LDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 617 ~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+++||||||+ +..+++|++||+|+++||+||+++||+||+||
T Consensus 236 ~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTP 278 (585)
T PTZ00417 236 YRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETP 278 (585)
T ss_pred cccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCC
Confidence 9999999995 78999999999999999999999999999999
No 48
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=99.95 E-value=1.4e-27 Score=266.44 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=145.4
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
++.+.|.++++++++.+..+++..-. .+|..+... ....|++|+|+|||+++|.+| |++|++|+|++|.
T Consensus 4 ~~~~~r~~k~~~l~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~ 82 (496)
T TIGR00499 4 DQLQTRREKLARLRQTGNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQ 82 (496)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCcc
Confidence 35567888899998888888764221 122222211 123488999999999999987 7999999999999
Q ss_pred EEEEEcCCcc--c-hHHhc-cCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcc
Q psy8087 543 IQCVLADILC--Q-TEHAL-LLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLD 618 (658)
Q Consensus 543 iQvv~~~~~~--~-~~~~~-~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~ 618 (658)
||++++.+.. . +.... .|+.||+|+|+|++.+++ +|++||.+++|++||+|.. |+|...++.+|.++|++
T Consensus 83 iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~gelel~~~~i~ilsk~~~-plP~k~~~~~d~e~r~r 156 (496)
T TIGR00499 83 IQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTK-----TGELSVHVTELQILTKALR-PLPDKFHGLTDQETRYR 156 (496)
T ss_pred EEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEECC-----CCcEEEEeeEEEEEecCCC-CCCccccccCChhhhhh
Confidence 9999986532 1 23333 489999999999998765 7899999999999999964 55655666779999999
Q ss_pred cceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 619 NRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 619 ~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||||||+ +.++++|++||.|+++||+||+++||+||+||
T Consensus 157 ~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP 197 (496)
T TIGR00499 157 QRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETP 197 (496)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCC
Confidence 99999997 69999999999999999999999999999999
No 49
>KOG0556|consensus
Probab=99.95 E-value=3.6e-27 Score=244.29 Aligned_cols=168 Identities=26% Similarity=0.303 Sum_probs=139.7
Q ss_pred ccCCCCCCCccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc-----cch-HHhccCC
Q psy8087 489 VLKEDPSLPPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL-----CQT-EHALLLS 561 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-----~~~-~~~~~L~ 561 (658)
......+.+...|+.++++ ....|+.|+|+||||.-|..| |++|++||+++.++||++..+. .+| +++..|+
T Consensus 58 ~l~~s~~~~~~~~~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is 136 (533)
T KOG0556|consen 58 SLIQSQSKEGRELTDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSIS 136 (533)
T ss_pred cccccccccccceeehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcC
Confidence 3333333445677888876 566789999999999999999 8999999999999999996542 245 7888999
Q ss_pred CCcEEEEEEEEEecCCC-CCCC-CceEEEEEEEEEEecCCCCCCCcccC-------------------CCCChhhhcccc
Q psy8087 562 TESSVQFRGRIEKVPEG-KSAP-GGHELKVDYWEVVGLAPAGGADAILN-------------------EEALPDVQLDNR 620 (658)
Q Consensus 562 ~gs~V~V~G~v~~~~~~-~~~~-g~~El~~~~i~vls~~~~~~~~~~~~-------------------~~~~~e~r~~~R 620 (658)
.||+|.|.|+|.+.+++ ++|+ +.+||++.++.+||.+++. +|.... ...+.++|++||
T Consensus 137 ~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~-LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnR 215 (533)
T KOG0556|consen 137 KESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPN-LPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNR 215 (533)
T ss_pred cceEEEEEEEEecCCCcccccccceeEEEEEEEEEEeccccc-CCeeehhhcccccchhhhcCCccccceecccccccce
Confidence 99999999999998866 4544 7899999999999998643 332211 012679999999
Q ss_pred eeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 621 HIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 621 ~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.||||+|.+++|||+.+.|+.+||+||..+||+||+||
T Consensus 216 vlDLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTp 253 (533)
T KOG0556|consen 216 VLDLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTP 253 (533)
T ss_pred eeecccccchheeehHHHHHHHHHHHHHhcCcceeccc
Confidence 99999999999999999999999999999999999998
No 50
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=99.95 E-value=4.8e-27 Score=264.17 Aligned_cols=147 Identities=27% Similarity=0.436 Sum_probs=128.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC----CCCCCc
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG----KSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~g~ 584 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.+|||++.+...++.+..|+.||+|.|+|+|..++++ +.++|+
T Consensus 12 ~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~ 90 (583)
T TIGR00459 12 EHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPDADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGE 90 (583)
T ss_pred hhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCc
Confidence 56799999999999999999 6999999999999999998763334667889999999999999987643 256899
Q ss_pred eEEEEEEEEEEecCCCCCCCccc-CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAIL-NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~-~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||.++++++||+|.. +|+.. ....+.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 91 iEl~~~~i~iL~~a~~--~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP 163 (583)
T TIGR00459 91 IEILAESITLLNKSKT--PPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETP 163 (583)
T ss_pred EEEEEeEEEEeecCCC--CCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999999999999863 23222 334678999999999999999999999999999999999999999999999
No 51
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.8e-27 Score=250.84 Aligned_cols=150 Identities=38% Similarity=0.535 Sum_probs=128.7
Q ss_pred eecccCCccCC-cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCC
Q psy8087 502 IKIKDGEKYRD-KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 502 ~~i~~~~~~~g-~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
+.+.+...+.+ ++|+|+|||+++|++| +++|+.|||++|.||||+.++.. .++ +..|+.||+|.|+|+|+.++
T Consensus 5 ~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~G~v~~~~- 81 (435)
T COG0017 5 TYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNKVYEELFK-AKKLTLESSVVVTGIVKASP- 81 (435)
T ss_pred eeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCCCcHHHhh-hhcCCCccEEEEEEEEEcCC-
Confidence 34555544444 9999999999999998 69999999999999999986422 234 67899999999999998876
Q ss_pred CCCCCCceEEEEEEEEEEecCCCCCCCcccCCCC-ChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEec
Q psy8087 578 GKSAPGGHELKVDYWEVVGLAPAGGADAILNEEA-LPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~-~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVe 656 (658)
.+++++||++++++|++.+. .++|. .++.+ +.++++++||||||++..+++||+||.|++++|+||.++||+||+
T Consensus 82 --~a~~g~El~v~~i~Vl~~a~-~~~Pi-~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~gF~eV~ 157 (435)
T COG0017 82 --KAPQGFELQVEKIEVLGEAD-PPYPI-DKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVH 157 (435)
T ss_pred --CCCCCEEEEEEEEEEeeccC-CCCCc-CcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhCCcEEec
Confidence 36899999999999999994 34443 33444 699999999999999999999999999999999999999999999
Q ss_pred CC
Q psy8087 657 IE 658 (658)
Q Consensus 657 Tp 658 (658)
||
T Consensus 158 tP 159 (435)
T COG0017 158 TP 159 (435)
T ss_pred Cc
Confidence 99
No 52
>PLN02903 aminoacyl-tRNA ligase
Probab=99.94 E-value=1.1e-26 Score=262.30 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=128.5
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPE----GKSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~----~~~~ 581 (658)
..+.|++|+|+|||+++|.+| +++|++|||++|.+|||++.+. ..+..+..|+.||+|.|+|+|..+++ ++.+
T Consensus 68 ~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~ 146 (652)
T PLN02903 68 VNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMK 146 (652)
T ss_pred hhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCC
Confidence 467899999999999999998 7999999999999999998653 22356788999999999999998742 2455
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccC------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc-CCcEE
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILN------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD-RNYTE 654 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~-~gF~E 654 (658)
+|++||.+++++|||+|.. ++|.... ...+.++|+++||||||++.++++|++||+|+++||+||.+ +||+|
T Consensus 147 tGeiEl~~~~i~VL~~a~~-~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiE 225 (652)
T PLN02903 147 TGSVEVVAESVDILNVVTK-SLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVE 225 (652)
T ss_pred CCCEEEEEeEEEEEecCCC-CCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 7999999999999999853 3343332 23678999999999999999999999999999999999997 99999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
|+||
T Consensus 226 VeTP 229 (652)
T PLN02903 226 IETP 229 (652)
T ss_pred EECC
Confidence 9999
No 53
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-26 Score=250.22 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHhHHHHHhcccCCCCCCCcc---------ceeecccCCcc--CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy8087 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPPA---------VRIKIKDGEKY--RDKRVTIFGWVHRLRRQGKGLMFVTLRD 538 (658)
Q Consensus 470 k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~--~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd 538 (658)
...++.+.|.++++++++.++.+++..-.. +|.... .+.. ....|+|+|||.++|.+| |++|++|.|
T Consensus 9 ~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~-~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d 86 (502)
T COG1190 9 DLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKT-KEELEALNIEVSVAGRIMTIRNMG-KASFADLQD 86 (502)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCCCcCcccccHHHHHHHHhccc-hhhhhhccceeEEecceeeecccC-ceeEEEEec
Confidence 345567888889999988888887643321 121111 1111 122499999999999999 899999999
Q ss_pred CCEEEEEEEcCCc---cch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChh
Q psy8087 539 GSGFIQCVLADIL---CQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPD 614 (658)
Q Consensus 539 ~~~~iQvv~~~~~---~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e 614 (658)
++|.||++++++. ..+ .+...++.||+|+|+|.+.+++ +|+++|.|++|++|++|+. |+|..+++.+|+|
T Consensus 87 ~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~-----~GelSv~v~~~~lLsKsL~-pLPeK~hgL~D~E 160 (502)
T COG1190 87 GSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTK-----TGELSVSVEELRLLSKSLR-PLPEKFHGLTDKE 160 (502)
T ss_pred CCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecC-----CCceEEEEEEEeeecccCC-CCChhhcCCccHH
Confidence 9999999999764 233 3567799999999999998766 8999999999999999985 7888889999999
Q ss_pred hhcccceeeeech-hhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 615 VQLDNRHIMIRGE-NTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 615 ~r~~~R~LdLR~~-~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|+|+|||||.++ ..+.+|..||+|+++||+||+++||+|||||
T Consensus 161 ~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP 205 (502)
T COG1190 161 IRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETP 205 (502)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccc
Confidence 9999999999995 8999999999999999999999999999999
No 54
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=99.94 E-value=3e-26 Score=259.64 Aligned_cols=147 Identities=29% Similarity=0.448 Sum_probs=128.0
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC----CCCCCc
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG----KSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~g~ 584 (658)
.+.|++|+|+|||+++|.+| +++|++|||++|.+|||++.....++.+..|+.||+|.|+|+|..++++ +.++|+
T Consensus 14 ~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~ 92 (588)
T PRK00476 14 SHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPDAEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGE 92 (588)
T ss_pred HhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCCHHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCc
Confidence 56799999999999999998 7999999999999999998632224667889999999999999987633 345799
Q ss_pred eEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||.+++++|||+|. ++|.... ...+.++|+++||||||++.++++|++||+|++++|+||+++||+||+||
T Consensus 93 ~El~~~~i~il~~a~--~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP 166 (588)
T PRK00476 93 IEVLASELEVLNKSK--TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETP 166 (588)
T ss_pred EEEEEeEEEEEecCC--CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 999999999999996 2343332 23578999999999999999999999999999999999999999999999
No 55
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=99.94 E-value=3.3e-26 Score=274.60 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=149.5
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI 550 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~ 550 (658)
.++.+.|.++++++++.++++++..-. ....+.+. +...|++|+|+|||+++|.+| |++|++|||++|.|||+++++
T Consensus 611 ~~~~~~r~~k~~~l~~~g~~pyp~~~~-~~~~~~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~~~~ 688 (1094)
T PRK02983 611 PEQVRVRLAKLEALRAAGVDPYPVGVP-PTHTVAEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLDAS 688 (1094)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCc-CccCHHHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEEECC
Confidence 346778889999999999888763221 11223332 346788999999999999999 799999999999999999865
Q ss_pred cc---ch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeec
Q psy8087 551 LC---QT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRG 626 (658)
Q Consensus 551 ~~---~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~ 626 (658)
.. .+ .+...|+.||+|+|+|++.+++ +|++||.+++|+++++|.. |+|...++..++++|+++||||||+
T Consensus 689 ~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~-----~ge~ei~~~~i~ll~k~~~-plP~k~~~~~d~e~R~r~R~lDL~~ 762 (1094)
T PRK02983 689 RLEQGSLADFRAAVDLGDLVEVTGTMGTSR-----NGTLSLLVTSWRLAGKCLR-PLPDKWKGLTDPEARVRQRYLDLAV 762 (1094)
T ss_pred ccchhhHHHHHhcCCCCCEEEEEEEEEEcC-----CCCEEEEEeEEEEEeccCc-CCCCccccCCChhhcchhhhhhhhc
Confidence 32 12 3345699999999999998765 6899999999999999974 5565556778999999999999987
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 627 -ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 627 -~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+.++++|++||+|+++||+||+++||+|||||
T Consensus 763 n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTP 795 (1094)
T PRK02983 763 NPEARDLLRARSAVVRAVRETLVARGFLEVETP 795 (1094)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 79999999999999999999999999999999
No 56
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=99.94 E-value=3.6e-26 Score=252.63 Aligned_cols=152 Identities=31% Similarity=0.443 Sum_probs=129.7
Q ss_pred eecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCC
Q psy8087 502 IKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEG 578 (658)
Q Consensus 502 ~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~ 578 (658)
+.+.++ ....|++|+|+|||+++|.+| |++|++|||++|.|||+++.+. ..++.+..|+.||+|.|+|++..++
T Consensus 5 ~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~~~-- 81 (437)
T PRK05159 5 HLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKANP-- 81 (437)
T ss_pred eEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEcCC--
Confidence 445554 344599999999999999998 7999999999999999998653 2235678899999999999998765
Q ss_pred CCCCCceEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEec
Q psy8087 579 KSAPGGHELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656 (658)
Q Consensus 579 ~~~~g~~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVe 656 (658)
.+.|++||.+++++|||+|.. ++|.... ...+.++|+++||||||++..+++|++||.|+++||+||.++||+||+
T Consensus 82 -~~~~~~el~~~~i~vls~a~~-~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~ 159 (437)
T PRK05159 82 -KAPGGVEVIPEEIEVLNKAEE-PLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIF 159 (437)
T ss_pred -CCCCCEEEEEeEEEEEeCCCC-CCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 346899999999999999973 3443222 245789999999999999999999999999999999999999999999
Q ss_pred CC
Q psy8087 657 IE 658 (658)
Q Consensus 657 Tp 658 (658)
||
T Consensus 160 TP 161 (437)
T PRK05159 160 TP 161 (437)
T ss_pred CC
Confidence 99
No 57
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=99.94 E-value=3.5e-26 Score=260.45 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=127.4
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCC----CC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEG----KS 580 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~ 580 (658)
..+.|++|+|+|||+++|++| +++|++|||++|.+|||++++. ..+..+..|+.||+|.|+|+|..++.+ +.
T Consensus 14 ~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~ 92 (706)
T PRK12820 14 LDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRLEETENPHI 92 (706)
T ss_pred hhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCC
Confidence 457799999999999999999 7999999999999999998643 224567889999999999999986533 23
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCcccC-----------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc
Q psy8087 581 APGGHELKVDYWEVVGLAPAGGADAILN-----------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD 649 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~~~~~~~~~~~~-----------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~ 649 (658)
.+|++||.+++++||++|...|++.... ...+.++|+++||||||++.++++|++||.|+++||+||++
T Consensus 93 ~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~~ 172 (706)
T PRK12820 93 ETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDS 172 (706)
T ss_pred CCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999986323321111 12468999999999999999999999999999999999999
Q ss_pred CCcEEecCC
Q psy8087 650 RNYTEVNIE 658 (658)
Q Consensus 650 ~gF~EVeTp 658 (658)
+||+||+||
T Consensus 173 ~gFiEVeTP 181 (706)
T PRK12820 173 RGFLEIETP 181 (706)
T ss_pred CCCEEEeCC
Confidence 999999999
No 58
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=99.94 E-value=7e-26 Score=249.38 Aligned_cols=145 Identities=32% Similarity=0.461 Sum_probs=125.9
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||+++.|||+++.+. ..++++..|+.||+|.|+|++..++ .++|++
T Consensus 9 ~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~---~~~~~~ 84 (428)
T TIGR00458 9 EMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKE---KAPGGF 84 (428)
T ss_pred hhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecC---CCCCcE
Confidence 56789999999999999998 5999999999999999998642 1235677899999999999998654 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.+++++|||+|.. ++|....+ ..+.++|+++||||||++..+++|++||.|++++|+||.++||+||+||
T Consensus 85 el~~~~i~vl~~~~~-~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP 158 (428)
T TIGR00458 85 EIIPTKIEVINEAKE-PLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTP 158 (428)
T ss_pred EEEEeEEEEEecCCC-CCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 999999999999963 34433322 3478999999999999999999999999999999999999999999999
No 59
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.2e-25 Score=253.74 Aligned_cols=141 Identities=21% Similarity=0.199 Sum_probs=120.2
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc----chHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC----QTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~----~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
++.|+|+|||+++|.+| |++|++|||.+|.|||+++.+.. .+... ..|+.||+|+|+|++.+++ +|++|
T Consensus 107 ~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~-----~Gele 180 (659)
T PTZ00385 107 QATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQ-----RGELS 180 (659)
T ss_pred CCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecC-----CceEE
Confidence 56799999999999999 69999999999999999986532 23333 5799999999999998765 89999
Q ss_pred EEEEEEEEEecCC--CCCC-C--cccCCCCChhhhcccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 587 LKVDYWEVVGLAP--AGGA-D--AILNEEALPDVQLDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 587 l~~~~i~vls~~~--~~~~-~--~~~~~~~~~e~r~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|.++++++||++. ..+. | +.++...+.++|+++||||||+ +.++++|++||+|+++||+||+++||+||+||
T Consensus 181 I~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTP 258 (659)
T PTZ00385 181 VAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETP 258 (659)
T ss_pred EEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 9999999999953 2111 1 1234567999999999999986 68999999999999999999999999999999
No 60
>PLN02221 asparaginyl-tRNA synthetase
Probab=99.93 E-value=1.4e-25 Score=251.41 Aligned_cols=148 Identities=25% Similarity=0.346 Sum_probs=128.1
Q ss_pred CccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCC--EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGK-GLMFVTLRDGS--GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~--~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
..+.|++|+|+|||+++|.+|+ +++|++|||++ |.||||+.++.. .....|+.||+|.|+|+|+.++..+.++|+
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~ 123 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTLVATGTCVTVDGVLKVPPEGKGTKQK 123 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhcCCCceEEEEEEEEEeCCccCCCCcc
Confidence 5678999999999999999996 48999999999 789999976422 122368999999999999988755567889
Q ss_pred eEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||++++++||++|...++| +....++.++++++|||++|++.++++||+||.|+++||+||.++||+||+||
T Consensus 124 iEl~v~~i~vl~~a~~~~~P-i~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP 196 (572)
T PLN02221 124 IELSVEKVIDVGTVDPTKYP-LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTP 196 (572)
T ss_pred EEEEEeEEEEEecCCCCCCC-CCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 99999999999998532333 33446688999999999999999999999999999999999999999999999
No 61
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=99.93 E-value=3.7e-25 Score=245.12 Aligned_cols=145 Identities=30% Similarity=0.396 Sum_probs=126.0
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..+.|++|+|+|||+++|.+| |++|++|||++|.+|+++..+. ..++.+..|+.||+|.|+|++..++ .++|++
T Consensus 12 ~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~---~~~~~~ 87 (450)
T PRK03932 12 GKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESP---RAGQGY 87 (450)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCC---CCCCCE
Confidence 466799999999999999997 7999999999999998886543 2246677899999999999998765 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.+++++||+++.. ++| +..+.++.++++++||||||++.++++|++||.|++++|+||+++||+||+||
T Consensus 88 el~~~~i~vl~~~~~-~~p-~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP 158 (450)
T PRK03932 88 ELQATKIEVIGEDPE-DYP-IQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTP 158 (450)
T ss_pred EEEEEEEEEccCCCC-CCC-CCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Confidence 999999999999742 233 33445678999999999999999999999999999999999999999999999
No 62
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=99.92 E-value=7.7e-25 Score=242.37 Aligned_cols=146 Identities=29% Similarity=0.380 Sum_probs=125.9
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS--GFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~--~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
..+.|++|+|+|||+++|.+| |++|++|||++ +.||||+++.. ..+..+..|+.||+|.|+|++..++ .+++
T Consensus 12 ~~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~---~~~~ 87 (453)
T TIGR00457 12 YKFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESP---GKGQ 87 (453)
T ss_pred hhcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCC---CCCC
Confidence 356799999999999999886 89999999999 99999998752 2235677899999999999998754 3468
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||.+++++||++|+..++| ...+.++.++++++||||+|++..+++|++||.|++++|+||+++||+||+||
T Consensus 88 ~~El~~~~i~vl~~~~~~~~P-~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP 161 (453)
T TIGR00457 88 PVELQVKKIEVVGEAEPDDYP-LQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPP 161 (453)
T ss_pred CEEEEEeEEEEEecCCccCCC-CCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Confidence 999999999999999622233 22334678899999999999999999999999999999999999999999999
No 63
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=99.91 E-value=4e-24 Score=239.30 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=126.6
Q ss_pred CccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCCE--EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCC-----
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGK-GLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGK----- 579 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~----- 579 (658)
..+.|++|+|+|||+++|.+|+ +++|++|||++| .+|||++.....+..+..|+.||+|.|+|+++.++...
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g 156 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGVGCCFRFTGKLIISPVQNENKKG 156 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhcCCCccEEEEEEEEEcCCccccCcCC
Confidence 4567999999999999999985 599999999998 49999976533445667899999999999998876331
Q ss_pred CCCCceEEEE-----EEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEE
Q psy8087 580 SAPGGHELKV-----DYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTE 654 (658)
Q Consensus 580 ~~~g~~El~~-----~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~E 654 (658)
..++++||.+ .+++||+.+......++.++.++.|+++++||||+|++.++++||+||.|..++|+||+++||+|
T Consensus 157 ~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~e 236 (586)
T PTZ00425 157 LLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLY 236 (586)
T ss_pred CCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 2357799998 79999998832111233445678999999999999999999999999999999999999999999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
|+||
T Consensus 237 I~TP 240 (586)
T PTZ00425 237 IHTP 240 (586)
T ss_pred eeCC
Confidence 9999
No 64
>PLN02603 asparaginyl-tRNA synthetase
Probab=99.91 E-value=6.6e-24 Score=238.08 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=125.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEcCCccchHHhc--cCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG--FIQCVLADILCQTEHAL--LLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~--~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
....|++|+|+|||+++|.+| +++|++|+|+++ .||||++.+...++.+. .|+.||+|.|+|+++.++. +++
T Consensus 103 ~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs~V~V~G~v~~~~~---~~~ 178 (565)
T PLN02603 103 LARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQG---GKQ 178 (565)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCCEEEEEEEEEecCC---CCc
Confidence 356799999999999999997 799999999997 59999986544444444 4999999999999998763 357
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+||+++++++|++|+. ++| +..+....+.++.++|||+|++.++++||+||+|++++|+||+++||+|||||
T Consensus 179 ~~EL~v~~i~vlg~a~~-~~P-i~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~~gF~eV~TP 251 (565)
T PLN02603 179 KVELKVSKIVVVGKSDP-SYP-IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSP 251 (565)
T ss_pred cEEEEEeEEEEEECCCC-CCC-CcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 79999999999999974 343 34455678999999999999999999999999999999999999999999999
No 65
>PLN02532 asparagine-tRNA synthetase
Probab=99.85 E-value=7.2e-21 Score=214.24 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=111.6
Q ss_pred eecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCC
Q psy8087 524 LRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG 601 (658)
Q Consensus 524 ~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~ 601 (658)
.|.+| +++|++|||++|. +|||+++...... ..|+.|++|.|+|+|+.++ ...++|++||.+++++||+++...
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~L~~Es~V~V~G~V~~~~-~~~~~g~iEl~v~~i~VLg~a~~~ 204 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALAPLT--QLMATGTCILAEGVLKLPL-PAQGKHVIELEVEKILHIGTVDPE 204 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcccHh--hcCCCceEEEEEEEEEecC-CCCCCCcEEEEeeEEEEEecCCCC
Confidence 78887 7999999999998 9999986543222 5799999999999998863 234589999999999999987533
Q ss_pred CCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 602 GADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 602 ~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++| +.++.++.|+++++||||||++.++++||+||.|+++||+||+++||+||+||
T Consensus 205 p~P-i~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TP 260 (633)
T PLN02532 205 KYP-LSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVP 260 (633)
T ss_pred CCc-cccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 344 33445688999999999999999999999999999999999999999999999
No 66
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.85 E-value=1.4e-20 Score=175.97 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=96.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCC----CCCCCC
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPE----GKSAPG 583 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~----~~~~~g 583 (658)
...|+.|+|+|||+++|.+| +++|++|||+++.+||+++..... +.++..|+.||+|.|+|++..++. ..+++|
T Consensus 11 ~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~ 89 (135)
T cd04317 11 SHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTG 89 (135)
T ss_pred hHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCCccccCCCCCCC
Confidence 45689999999999999998 599999999999999999865333 466778999999999999987653 134568
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechh
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGEN 628 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~ 628 (658)
++||.++++++|++|. ++|....+ ..+.++|+++||||||++.
T Consensus 90 ~~El~~~~i~vl~~~~--~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 90 EIEVVASELEVLNKAK--TLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred cEEEEEeEEEEEECCC--CCCCccccccCCCHHHhhhcceeecCCCC
Confidence 8999999999999993 45544432 3578999999999999864
No 67
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.82 E-value=9.5e-20 Score=163.78 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=87.6
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhcc-CCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALL-LSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~-L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
+|+|+|||+++|.+| +++|++|||+++.+||+++... ..+..+.. |++||+|.|+|++..++ +|++||.+
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~-----~g~~El~~ 74 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK-----TGELSIFV 74 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CCCEEEEe
Confidence 489999999999998 5999999999999999997653 33433344 99999999999998766 58899999
Q ss_pred EEEEEEecCCCCCCCcccCCCCChhhhcccceeee
Q psy8087 590 DYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMI 624 (658)
Q Consensus 590 ~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdL 624 (658)
+++++|++|.. |+|...++..+.++|+++|||||
T Consensus 75 ~~~~ils~~~~-plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 75 KEFTLLSKSLR-PLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred CEeEEeeccCC-CCCCCccCcCChhheeecccccC
Confidence 99999999963 45555555678999999999996
No 68
>KOG2411|consensus
Probab=99.82 E-value=9.9e-20 Score=193.34 Aligned_cols=149 Identities=22% Similarity=0.278 Sum_probs=125.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPE----GKSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~----~~~~ 581 (658)
....|++|.+|||+...|.++ .+.|..|||..|.+|+.++.+... ......++.||+|.|.|++..++. ++++
T Consensus 43 ~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~ 121 (628)
T KOG2411|consen 43 VNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPNESINSKMK 121 (628)
T ss_pred cCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEecccccccCcccc
Confidence 456899999999999999994 899999999999999999876532 233456999999999999998853 2677
Q ss_pred CCceEEEEEEEEEEecCCCCCCCccc------CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc-CCcEE
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAIL------NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD-RNYTE 654 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~------~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~-~gF~E 654 (658)
+|.+|+.++++++++++..+ +|... .......+|+++||||||.+.++..+|+||.++..+|+||.+ +||+|
T Consensus 122 tg~vev~~e~~~vln~~~~~-~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFve 200 (628)
T KOG2411|consen 122 TGFVEVVAEKVEVLNPVNKK-LPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFVE 200 (628)
T ss_pred ccceEEEeeeeEEecCccCC-CccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCeee
Confidence 89999999999999998643 23222 123566889999999999999999999999999999999966 56999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
||||
T Consensus 201 vETP 204 (628)
T KOG2411|consen 201 VETP 204 (628)
T ss_pred ccCc
Confidence 9998
No 69
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.74 E-value=2.2e-17 Score=147.18 Aligned_cols=101 Identities=34% Similarity=0.503 Sum_probs=83.8
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
+|+|+|||+++|.+| |++|++|||++|.+||+++.+. ..+..+..|+.||+|.|+|++..++. ..+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~---~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPR---APGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCC---CCCCEEEEEEE
Confidence 489999999999998 6899999999999999998642 22455678999999999999988763 35689999999
Q ss_pred EEEEecCCCCCCCcccCCCCChhhhccccee
Q psy8087 592 WEVVGLAPAGGADAILNEEALPDVQLDNRHI 622 (658)
Q Consensus 592 i~vls~~~~~~~~~~~~~~~~~e~r~~~R~L 622 (658)
++++++|. ++|.. . ..+.++++++|||
T Consensus 77 i~vl~~a~--~~pi~-~-~~~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE--FFPIT-E-DASDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC--CCccC-C-CCCHHHHhhccCC
Confidence 99999985 33332 2 3489999999997
No 70
>KOG0554|consensus
Probab=99.71 E-value=6.4e-17 Score=168.77 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=125.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
....|++++|.|||.++|..| +.+|+++.||+.. +|||++. ...+.+..|++|.|+|.+..+ +...+++
T Consensus 16 ~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~-----~~~q~la~Gt~i~~~g~l~~~---~~~~q~i 86 (446)
T KOG0554|consen 16 HPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDS-----EQSQLLATGTCISAEGVLKVS---KGAKQQI 86 (446)
T ss_pred CCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEech-----HHhhhccccceEEEEeeEEec---cchheee
Confidence 345689999999999999997 7999999999985 9999987 345679999999999999775 4567899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+.++++.+++.+... +++.++...++..++.-||..|++.+.+++|+||++..++++||++++|++|+||
T Consensus 87 el~~eki~~vG~v~~~--ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tP 157 (446)
T KOG0554|consen 87 ELNAEKIKVVGTVDES--YPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTP 157 (446)
T ss_pred eeeeeEEEEEeecCCC--CCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCc
Confidence 9999999999998642 5566667889999999999999999999999999999999999999999999998
No 71
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.67 E-value=6.9e-16 Score=137.24 Aligned_cols=86 Identities=36% Similarity=0.329 Sum_probs=72.9
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc----cc-hHHhccCCCCcEEEEEEEEEecCCC--CCCCCceE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL----CQ-TEHALLLSTESSVQFRGRIEKVPEG--KSAPGGHE 586 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~----~~-~~~~~~L~~gs~V~V~G~v~~~~~~--~~~~g~~E 586 (658)
.|+|+|||+++|.+|++++|++|||+++.+||+++... .. +.++..|+.||+|.|+|++..++.. ..+++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 38999999999999978999999999999999998653 11 3566789999999999999886532 12358999
Q ss_pred EEEEEEEEEecCC
Q psy8087 587 LKVDYWEVVGLAP 599 (658)
Q Consensus 587 l~~~~i~vls~~~ 599 (658)
|+++++++|++|.
T Consensus 81 l~~~~i~il~~~~ 93 (102)
T cd04320 81 LHIEKIYVVSEAA 93 (102)
T ss_pred EEEEEEEEEecCC
Confidence 9999999999985
No 72
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.65 E-value=2.3e-15 Score=135.33 Aligned_cols=88 Identities=33% Similarity=0.531 Sum_probs=76.0
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
...|+.|+|+|||+++|.+| +++|++|||+++.+||+++.... .+.++..|+.||+|.|+|++..++. ..+++
T Consensus 9 ~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~---~~~~~ 84 (108)
T cd04316 9 ELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPK---APNGV 84 (108)
T ss_pred hhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCC---CCCCE
Confidence 45689999999999999998 69999999999999999985421 2467788999999999999988763 35789
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
||.++++++|++++.
T Consensus 85 Ei~~~~i~il~~~~~ 99 (108)
T cd04316 85 EIIPEEIEVLSEAKT 99 (108)
T ss_pred EEEEeEEEEEeCCCC
Confidence 999999999999863
No 73
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.63 E-value=3.3e-15 Score=128.72 Aligned_cols=84 Identities=31% Similarity=0.381 Sum_probs=70.5
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCC-CCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGK-SAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~-~~~g~~El~~~~ 591 (658)
+|+|+|||+++|.++++++|++|||+++ .+||+++.+...++.+..|+.||+|.|+|++..++... .++|++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~ 80 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDD 80 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEE
Confidence 4899999999999545899999999999 69999986544456667899999999999999877322 345999999999
Q ss_pred EEEEec
Q psy8087 592 WEVVGL 597 (658)
Q Consensus 592 i~vls~ 597 (658)
+++|++
T Consensus 81 i~il~~ 86 (86)
T cd04321 81 IQTLNA 86 (86)
T ss_pred EEEecC
Confidence 999974
No 74
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.62 E-value=4.3e-15 Score=127.65 Aligned_cols=83 Identities=45% Similarity=0.654 Sum_probs=72.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
.|+|+|||+++|.+| +++|++|||+++.+||+++.+... ++.+..|+.||+|.|+|++..++.+..+++++||.+++
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~~ 79 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEE 79 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEeE
Confidence 389999999999998 599999999999999999865432 46778899999999999999877444467999999999
Q ss_pred EEEEec
Q psy8087 592 WEVVGL 597 (658)
Q Consensus 592 i~vls~ 597 (658)
+++|++
T Consensus 80 i~il~~ 85 (85)
T cd04100 80 LEVLSK 85 (85)
T ss_pred EEEECC
Confidence 999975
No 75
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.61 E-value=7.3e-15 Score=125.97 Aligned_cols=83 Identities=54% Similarity=0.943 Sum_probs=71.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+|+|+|||+++|.+| +++|++|||+++.+|++++.+... ++++..|+.||+|.|+|++..++.+...++++||.++++
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~~i 79 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDYL 79 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEEEEE
Confidence 489999999999997 799999999999999999865332 566788999999999999998774433367899999999
Q ss_pred EEEec
Q psy8087 593 EVVGL 597 (658)
Q Consensus 593 ~vls~ 597 (658)
++|++
T Consensus 80 ~vl~~ 84 (84)
T cd04323 80 EIIGE 84 (84)
T ss_pred EEEcC
Confidence 99974
No 76
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.55 E-value=4.4e-14 Score=120.50 Aligned_cols=79 Identities=37% Similarity=0.556 Sum_probs=68.9
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
.|+|+|||+++|.+| +++|++|||+++. +||+++.+...++.+..|+.||+|.|+|++..++. +++++||.+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~---~~~~~El~~~~ 76 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPG---AKQPFELQAEK 76 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCC---CCCCEEEEEEE
Confidence 379999999999997 7999999999995 99999876444566788999999999999998762 25899999999
Q ss_pred EEEEe
Q psy8087 592 WEVVG 596 (658)
Q Consensus 592 i~vls 596 (658)
+++++
T Consensus 77 i~il~ 81 (82)
T cd04318 77 IEVLG 81 (82)
T ss_pred EEEec
Confidence 99986
No 77
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.45 E-value=9.4e-13 Score=142.24 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred CchHHHhhhCCcEEEcCCcccccc------CCCCc----cceeeccCCcceeec--cCHHHHHHHhc----cc-CCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ------VEGGS----TLFSLNFFGEPAYLT--QSSQLYLETCL----PA-LGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~------~eG~~----~~F~~~~~~~~~~L~--~Spqlylk~li----~g-~~rvfe 222 (658)
..||++|...||.||.||+|+... .+++. +.|. ++...+|| +.|+|+.-... .. --|+||
T Consensus 247 d~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFE 323 (453)
T TIGR02367 247 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFE 323 (453)
T ss_pred HHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccCCeeEEE
Confidence 599999999999999999995211 11111 2333 35568999 88998854322 12 359999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKL 260 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~ 260 (658)
||+|||+|..+ .+|+.||+|++++.+.. ++.|+..++
T Consensus 324 IGkVFR~E~~~-~thlREF~QL~~eIaG~~atfaDlealL 362 (453)
T TIGR02367 324 IGPCYRKESDG-KEHLEEFTMLNFCQMGSGCTRENLEAII 362 (453)
T ss_pred EcCeEecCCCC-CCCcCeEEEEEEEEECCCCCHHHHHHHH
Confidence 99999999874 58999999999999876 466666433
No 78
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.42 E-value=3e-12 Score=130.60 Aligned_cols=256 Identities=17% Similarity=0.237 Sum_probs=163.4
Q ss_pred hhCCcEEEcCCccccccCC------CCccc--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEeeeee-cCC
Q psy8087 167 LANGIAKVTPPTLVQTQVE------GGSTL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIAQSYR-AEN 231 (658)
Q Consensus 167 ~~~gF~EV~TPiL~~~~~e------G~~~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~~~FR-~E~ 231 (658)
.+.+.+.|..|+++....+ |--+| |.+..+ +..+-.-+|---|+.+++. || +.+|.=..+.| +|+
T Consensus 17 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 96 (309)
T cd00645 17 KELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDED 96 (309)
T ss_pred HHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3468999999999755442 11223 555444 5677788888899998886 65 66888777666 567
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
. ++.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+ +.+.. ..| ..|+|..+-++...+
T Consensus 97 l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y-~~~~~-~Lp-~~i~FitsqeL~~~Y--- 169 (309)
T cd00645 97 L-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKY-PQLEP-ILP-EEITFITSQELEDRY--- 169 (309)
T ss_pred c-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-hhhhh-cCC-CceEEecHHHHHHHC---
Confidence 6 4589866777788877665555566666666666666654332111111 11100 011 245665555544332
Q ss_pred CCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCceeEEEEEe------CCcceeeece
Q psy8087 312 KPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALTESVDVLF------PNVGEVIGGS 381 (658)
Q Consensus 312 ~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~~~fdL~~------~G~~Ei~~G~ 381 (658)
|++ =...=|..+.+. ..-|||+.---.++- -++| |+...+...=|+++ ..+ ||.+++
T Consensus 170 -P~l--------~~keRE~~i~ke-~gaVFi~~IG~~L~~--g~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmG 236 (309)
T cd00645 170 -PDL--------TPKEREDAICKE-HGAVFIIGIGGKLSD--GKKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMG 236 (309)
T ss_pred -CCC--------CHHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCCcCccccceEEEEchhcCcee-eecCcc
Confidence 111 112223344433 235677664332221 1222 23334455555544 377 999999
Q ss_pred eccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 382 MRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 382 ~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
+|.+. +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|+|..+|.+|.+=
T Consensus 237 iRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 237 IRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred eEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceeec
Confidence 99999 99999999988 46566665 9999999 999999999999999999999999999764
No 79
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.42 E-value=1.3e-12 Score=141.70 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=116.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC------CCCc----cceeeccCCcceeec--cCHHHHHHHhc----c-cCCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV------EGGS----TLFSLNFFGEPAYLT--QSSQLYLETCL----P-ALGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~------eG~~----~~F~~~~~~~~~~L~--~Spqlylk~li----~-g~~rvfe 222 (658)
.+||++|...||.||.||+|+.... .++. ..|. .+...+|| ..|.|+..... . .--|+||
T Consensus 211 ~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~---ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFE 287 (417)
T PRK09537 211 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFE 287 (417)
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhhee---eCCceEehhhhHHHHHHHHHhhhhcccCCeeEEE
Confidence 5999999999999999999963210 1111 1222 35678999 68998875431 1 1258999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYAD 300 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~e 300 (658)
||+|||+|.. +.+|++||+|++++....+ +.|++.++++++..+
T Consensus 288 IG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L--------------------------------- 333 (417)
T PRK09537 288 IGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL--------------------------------- 333 (417)
T ss_pred EeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC---------------------------------
Confidence 9999999986 4589999999999998653 556555544444321
Q ss_pred HHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeec
Q psy8087 301 AIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380 (658)
Q Consensus 301 a~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G 380 (658)
|++. ... +...| . . ...-|+.++|. ||++|
T Consensus 334 --------GI~f---------------------------~i~-----s~~~f-i-~-------GR~adI~~g~~-el~~G 363 (417)
T PRK09537 334 --------GIDY---------------------------EII-----GDNCM-V-Y-------GDTIDIMHGDL-ELSSA 363 (417)
T ss_pred --------CCCc---------------------------EEe-----cCCcc-e-e-------cCeEEEEeCCE-EEeeE
Confidence 2100 000 00111 1 1 12457777776 99777
Q ss_pred eeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 381 SMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 381 ~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
...+-+ -++..|++ -|..+||||+|||+|+..|.+|||..
T Consensus 364 ~fGEi~------VLe~fGI~---------------~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 364 VVGPIP------LDREWGID---------------KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred EEEEEe------hhhhcCCC---------------CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 777662 33333443 27999999999999999999999985
No 80
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.38 E-value=1.9e-12 Score=128.75 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=69.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc---c-ce-eeccCCcceeeccCHHHHHHHhccc-----CCcEEEEeeeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS---T-LF-SLNFFGEPAYLTQSSQLYLETCLPA-----LGDVYCIAQSYR 228 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~---~-~F-~~~~~~~~~~L~~Spqlylk~li~g-----~~rvfeI~~~FR 228 (658)
+.+|++|...||.||.||.|+.... +... . .. .....+...+||.|+...+..++.. --|+||||+|||
T Consensus 7 ~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr 86 (211)
T cd00768 7 QKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFR 86 (211)
T ss_pred HHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEcceee
Confidence 4689999999999999999965311 1110 1 11 1223456789999999999877752 358999999999
Q ss_pred cCCCCC-ccCcceeeeeeeEeecCC
Q psy8087 229 AENSRT-RRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 229 ~E~~~~-~rHl~EFt~lE~e~a~~d 252 (658)
+|.... .+|+.||+|+++++...+
T Consensus 87 ~e~~~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 87 NEGGRRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred cCCCccccccceeEEEcCEEEEcCC
Confidence 997522 168899999999999864
No 81
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.36 E-value=2.1e-12 Score=120.70 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=55.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p 134 (658)
..|+.|+|+|||+++|.+|| ++|++|+|++|.+|++++.+....+ ....|+.||+|.|+|.+...|
T Consensus 12 ~~g~~V~i~Gwv~~~R~~gk-~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 12 HVGQEVTLCGWVQRRRDHGG-LIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred HCCCEEEEEEeEehhcccCC-EEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCC
Confidence 45788999999999999986 9999999999999999986543323 335799999999999998754
No 82
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.36 E-value=1.5e-11 Score=126.82 Aligned_cols=264 Identities=17% Similarity=0.226 Sum_probs=155.5
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|++||. +.+.++|..|+++.... |-. +| |.+..+ +..+-.-+|---||.+++. +| +.
T Consensus 16 ~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~-GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~geG 94 (348)
T PTZ00213 16 LKVKQIFSEALAKELNLIRVEAPLLAEVGD-GTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHKFPVGEG 94 (348)
T ss_pred HHHHHHHHHHHHHHhCeeEecCCeEEcCCC-CcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcCCCCCce
Confidence 34555553 46899999999975433 211 12 444444 5677778888889998886 65 56
Q ss_pred EEEEeeeee-cCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYR-AENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR-~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=.++.| +|.. ++.|.-=--|-|||+....-+.-++.+.+.++.++..+..........+ +.+.. ..| ..|+|
T Consensus 95 lytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y-p~l~~-~Lp-~~I~F 170 (348)
T PTZ00213 95 IYTDMNALRVEEEL-DNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEY-PNLKR-ILP-KEITF 170 (348)
T ss_pred eeeccccccCCccc-CccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-hhhhh-cCC-CceEE
Confidence 998666666 5665 4589877778888887665555566666666666666654322111111 11100 001 23444
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEe-------------------------------CCC
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR-------------------------------FPA 347 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~-------------------------------~P~ 347 (658)
..+-+++..+ |++. ...-|..+.+.. .-|||+. ||.
T Consensus 171 itsqeL~~~Y----P~lt--------~keRE~~i~ke~-gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~~~~~ 237 (348)
T PTZ00213 171 LHTEHLLKMY----PNLS--------PKEREREIVKKY-GAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVSASKIGFPT 237 (348)
T ss_pred ecHHHHHHHC----CCCC--------HHHHHHHHHHHh-CcEEEEeccCcCCCCCcCCCCCCCccccccccccccccccc
Confidence 4443333222 1100 001111111110 1122221 332
Q ss_pred C---CCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCcccee
Q psy8087 348 D---IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYG 422 (658)
Q Consensus 348 ~---~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~G 422 (658)
. +.|. ...+.-|..+ -=|+-++.-..||.++++|. |++.+.++++..| .+...+.||++ +..| +|+|+|+|
T Consensus 238 ~~~~~~~~-~~~~gLNGDi-lvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGG 313 (348)
T PTZ00213 238 ADPTMNSL-MSLQGLNGDI-LVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGG 313 (348)
T ss_pred cccccccc-ccccCccceE-EEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCccccc
Confidence 2 1111 0000001111 11333344335999999999 9999999999998 57778899999 7777 99999999
Q ss_pred cchhHHHHHHhcccCcchhhHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~ 445 (658)
||+|||+|+|+|..+|.||.+=.
T Consensus 314 IGqsRL~M~LL~k~HIgEVQ~sv 336 (348)
T PTZ00213 314 IGQSRLCMFMLRKKHIGEVQCSV 336 (348)
T ss_pred ccHHHHHHHHhCcchhcceeeee
Confidence 99999999999999999997643
No 83
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.35 E-value=2e-11 Score=125.76 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=168.6
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|+++|. +.+.+.|..|+++.... |-. +| |.+..+ +..+-.-+|---|+.+++. +| +.
T Consensus 16 ~~iK~~F~~~L~~~LnL~rvsaPlfv~~~s-GlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geG 94 (327)
T PRK05425 16 SFVKDFFERQLAKKLNLIRVSAPLFVRVGS-GLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEG 94 (327)
T ss_pred HHHHHHHHHHHHHhhCeeEecCCeEEcCCC-CcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCce
Confidence 35555553 46899999999975433 211 12 444444 3577788888899998886 65 56
Q ss_pred EEEEeeeee-cCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYR-AENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR-~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=..+.| +|+.| +.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+. .+..+ | ..|+|
T Consensus 95 lytdMnAiR~dE~ld-~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~-~~~~L--p-~~i~F 169 (327)
T PRK05425 95 LYTDMNAIRPDEDLD-NTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP-LLPFL--P-EEITF 169 (327)
T ss_pred eccCCccccCCcccC-cccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccC--C-CceEE
Confidence 888777666 56764 5898777788888876655555666666666666666544322222221 11111 1 24566
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCceeEEEEEe---
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALTESVDVLF--- 371 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~~~fdL~~--- 371 (658)
..+-++...+ |+. =...=|..+.+. ..-|||+.---.++- -++| |+...+...=||++
T Consensus 170 itsqeL~~~Y----P~l--------~~keRE~~i~ke-~gaVFi~~IG~~L~~--g~~Hd~RapDYDDW~LNGDilvw~~ 234 (327)
T PRK05425 170 ITSQELEDRY----PDL--------TPKEREDAIAKE-YGAVFLIGIGGKLSD--GKPHDGRAPDYDDWGLNGDILVWNP 234 (327)
T ss_pred ecHHHHHHHC----CCC--------CHHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCCcCcccCceEEEEcc
Confidence 5555544332 111 112224444433 235777764332221 1222 23333444555544
Q ss_pred --C-CcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 372 --P-NVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 372 --~-G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
. .+ ||.+++.|.+ ++.+.++++..| .++..+.||+++ ..| +|||+|+|||+|||+|+|+|..+|.+|.+=..
T Consensus 235 ~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~svW 311 (327)
T PRK05425 235 VLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQASVW 311 (327)
T ss_pred ccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhcccccccC
Confidence 2 67 9999999999 999999999998 577788999999 777 89999999999999999999999999986543
No 84
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.32 E-value=2.7e-11 Score=124.33 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=74.6
Q ss_pred CchHHHhhhCCcEEEcCCccccc--------cC-CC-Ccc---ceee-c-cC--Ccceeecc--CHHHHHHHhcc-c-CC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT--------QV-EG-GST---LFSL-N-FF--GEPAYLTQ--SSQLYLETCLP-A-LG 218 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~--------~~-eG-~~~---~F~~-~-~~--~~~~~L~~--Spqlylk~li~-g-~~ 218 (658)
..||++|...||.||.+|.+... .+ +. +.+ .|.+ + +- .....||. ||-+..-+... . --
T Consensus 24 ~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~~p~ 103 (247)
T PF01409_consen 24 REIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRPPPI 103 (247)
T ss_dssp HHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSHSSE
T ss_pred HHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcCCCe
Confidence 58999999999999999999421 01 11 111 1322 1 11 45667775 45443333111 2 47
Q ss_pred cEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 219 DVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
|+|+||+|||+|..|. +|+|||.|+|.-.... ++.++..+++.|+++++
T Consensus 104 kif~iG~VyR~D~~D~-th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 104 KIFEIGKVYRRDEIDA-THLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp EEEEEEEEESSSCSBS-SBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred EEEecCceEecCCccc-ccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 8999999999999876 9999999999988876 68898888888887765
No 85
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.25 E-value=2.4e-11 Score=109.19 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=58.5
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhc-CCCccEEEEEEEeEeCCCCccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALL-LSTESSVQFRGRIEKVPEENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~-l~~es~V~v~G~l~~~p~~~~d~~l~ 143 (658)
+|+|+|||+++|.+|| ++|++|+|+++.+|+|++.+.. ..|. ... |+.||+|.|+|.+..++.+.+|+.++
T Consensus 1 ~v~v~GwV~~~R~~g~-~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGK-LSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCC-eEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeC
Confidence 4899999999999986 9999999999999999986542 2232 234 99999999999999999887666554
No 86
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.22 E-value=2.1e-10 Score=121.39 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=74.8
Q ss_pred CchHHHhhhCCcEEEcCCccccc--------cCCC--CccceeeccCCcceeec--cCHHHHHHHhcccC-CcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT--------QVEG--GSTLFSLNFFGEPAYLT--QSSQLYLETCLPAL-GDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~--------~~eG--~~~~F~~~~~~~~~~L~--~Spqlylk~li~g~-~rvfeI~~~ 226 (658)
..||++|...||.|+++|.|... .+.+ |.+.-.+-|.....-|| .||-+-.-+.-... -|+|++|+|
T Consensus 115 ~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Pirif~~G~V 194 (339)
T PRK00488 115 EEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRIIAPGRV 194 (339)
T ss_pred HHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEEEEeeeE
Confidence 58999999999999999999531 1111 11111112234445555 56665333322222 489999999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
||++..|. +|.|+|.|+|.-.... ++.++...++.+++.++
T Consensus 195 yR~D~~Da-tH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 195 YRNDSDDA-THSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEcCCCCc-ccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 99998765 9999999999877664 78999888888888775
No 87
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.21 E-value=4.3e-10 Score=115.69 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=162.9
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCC-------ccc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGG-------STL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~-------~~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|++||. +.+.++|..|+++.... |- -+| |.+... +..+-.-+|---||.+++. || +.
T Consensus 13 ~~iK~~F~~~L~~~L~L~rVsAPLfv~~~s-GlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~geG 91 (330)
T TIGR00669 13 SFVKSTFTQQLEERLGLIEVQGPILSQVGD-GTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARHDFSAGEG 91 (330)
T ss_pred HHHHHHHHHHHHHHhCeEEeccceEEcCCC-CCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhcCCCCCce
Confidence 34555553 46899999999975433 21 123 445443 5777888898999998886 66 56
Q ss_pred EEEEeeeeec-CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYRA-ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR~-E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=..+-|. |+.-++.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+...- . .| ..|+|
T Consensus 92 lytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~~~~~~y~l~~-~--Lp-~~I~F 167 (330)
T TIGR00669 92 LFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEAAVSERFGLAP-F--LP-DQIHF 167 (330)
T ss_pred eeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c--CC-CceEE
Confidence 9987777775 662245898666777777776655555666666666666666544322222221110 0 11 24666
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCce---------e
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALT---------E 365 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~---------~ 365 (658)
..+-+++..+ |++. ...=|..+.+. ..-|||+.---.++- -++| |+...+. .
T Consensus 168 itsqeL~~~Y----P~lt--------~keRE~~i~ke-~gaVFi~~IG~~L~~--G~~Hd~RApDYDDW~t~~~~~~~gL 232 (330)
T TIGR00669 168 VHSEELVSRY----PDLD--------SKGRERAICKE-LGAVFLIGIGGKLSD--GKPHDVRAPDYDDWTTPSELGYKGL 232 (330)
T ss_pred ecHHHHHHHC----CCCC--------HHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCcccccccccccccCc
Confidence 5555554333 1111 12223334332 234666653322211 1111 1111222 3
Q ss_pred EEEEEe------CCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccC
Q psy8087 366 SVDVLF------PNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYH 437 (658)
Q Consensus 366 ~fdL~~------~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~ 437 (658)
.=|+++ ..+ ||.+.+.|. |++.+.++++..| .++..+.||+++ ..| +|||+|+|||+|||+|+|+|..+
T Consensus 233 NGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~H 309 (330)
T TIGR00669 233 NGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKH 309 (330)
T ss_pred CceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhcccc
Confidence 445543 367 999999996 5677888888888 577889999999 777 99999999999999999999999
Q ss_pred cchhhHHH
Q psy8087 438 VRDKYQLI 445 (658)
Q Consensus 438 Irdvi~f~ 445 (658)
|.+|.+=.
T Consensus 310 IgEVQ~sv 317 (330)
T TIGR00669 310 IGEVQASV 317 (330)
T ss_pred ccceeeee
Confidence 99997644
No 88
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.20 E-value=6.9e-11 Score=101.81 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=57.2
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccchhhh-hhcCCCccEEEEEEEeEeCCC------CccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQTEH-ALLLSTESSVQFRGRIEKVPE------ENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~~p~------~~~d~~l~ 143 (658)
.|+|+|||+++|+.+|+++|++|||++| .+||+++++. ..|. ...++.||+|.|+|.+..+|. +.+|+.++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~-~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~ 79 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKK-DAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVD 79 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCH-HHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEE
Confidence 3899999999998666799999999999 6999997653 2343 347999999999999998875 44666554
No 89
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.15 E-value=1.5e-10 Score=102.94 Aligned_cols=72 Identities=29% Similarity=0.307 Sum_probs=58.2
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEeccc---chh-h-hhhcCCCccEEEEEEEeEeCCC-------Cccc
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADIL---CQT-E-HALLLSTESSVQFRGRIEKVPE-------ENMK 139 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~---~~~-~-~~~~l~~es~V~v~G~l~~~p~-------~~~d 139 (658)
+|+|+|||+++|.+||+++|++|||++|.+||+++.+. .+. + ....|+.||+|.|+|.+..++. +.+|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999977999999999999999998653 122 2 2357999999999999998755 3466
Q ss_pred eEec
Q psy8087 140 VQLI 143 (658)
Q Consensus 140 ~~l~ 143 (658)
+.++
T Consensus 81 l~~~ 84 (102)
T cd04320 81 LHIE 84 (102)
T ss_pred EEEE
Confidence 6654
No 90
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.13 E-value=2.8e-10 Score=102.34 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=60.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEEeEeCCCCc--cceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGRIEKVPEEN--MKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~l~~~p~~~--~d~~l 142 (658)
..|++|+|+|||+++|.+|+ ++|++|||++|.+|++++++.. ..+ ....|+.||+|.|+|.+...|... +|+.+
T Consensus 10 ~~g~~V~v~Gwv~~~R~~g~-~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~~ 88 (108)
T cd04316 10 LDGEEVTVAGWVHEIRDLGG-IKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPKAPNGVEIIP 88 (108)
T ss_pred hCCCEEEEEEEEEeeeccCC-eEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCCCCCCEEEEE
Confidence 46789999999999999886 9999999999999999986532 123 335799999999999999887642 56555
Q ss_pred c
Q psy8087 143 I 143 (658)
Q Consensus 143 ~ 143 (658)
+
T Consensus 89 ~ 89 (108)
T cd04316 89 E 89 (108)
T ss_pred e
Confidence 4
No 91
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.13 E-value=2.7e-10 Score=97.85 Aligned_cols=71 Identities=31% Similarity=0.395 Sum_probs=57.8
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-h-hhhcCCCccEEEEEEEeEeCCC-----CccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-E-HALLLSTESSVQFRGRIEKVPE-----ENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~~~p~-----~~~d~~l~ 143 (658)
.|+|+|||+++|..|+ ++|++|||+++.+|++++.+..+. + ....|+.||+|.|+|.+.++|. +.+|+.++
T Consensus 1 ~V~i~Gwv~~~R~~g~-~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~ 78 (85)
T cd04100 1 EVTLAGWVHSRRDHGG-LIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAE 78 (85)
T ss_pred CEEEEEEEehhccCCC-EEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEe
Confidence 3899999999999886 999999999999999998765331 2 2357999999999999998874 33666554
No 92
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.12 E-value=2.5e-10 Score=97.37 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=57.7
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC--CccceEecC
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--ENMKVQLIH 144 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~--~~~d~~l~~ 144 (658)
.|+|+|||+++|.+|+ ++|++|||+++. +||+++++.........++.||+|.|+|.+..+|. +.+|+.+++
T Consensus 1 ~v~v~Gwv~~~R~~g~-~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~ 76 (82)
T cd04318 1 EVTVNGWVRSVRDSKK-ISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEK 76 (82)
T ss_pred CEEEEEeEEEEEcCCc-EEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEEE
Confidence 3899999999999775 899999999995 99999876432112357999999999999999886 446666643
No 93
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.08 E-value=4.5e-10 Score=96.28 Aligned_cols=64 Identities=34% Similarity=0.531 Sum_probs=53.7
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCCCC
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVPEE 136 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p~~ 136 (658)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+....+ ....|+.||+|.|+|.+.++|.+
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 65 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRA 65 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCcc
Confidence 389999999999986 58999999999999999986543223 33579999999999999998765
No 94
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.07 E-value=9.8e-10 Score=121.58 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=36.7
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLI 264 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li 264 (658)
-|+|.||+|||+|..|. +|+|||+|+|......+ ..+++.++.+++
T Consensus 358 ~k~fsigrVfR~d~~Da-tH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~ 405 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDA-THLAEFHQVEGFVIDRNLTLGDLIGTIREFF 405 (494)
T ss_pred ceEEecCCEecCCCCCC-CcCceeEEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 48999999999999976 99999999999988764 455555544444
No 95
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.4e-09 Score=112.94 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC-----------CccceeeccCCcc---eeec--cCHHHHHHHhccc--CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG-----------GSTLFSLNFFGEP---AYLT--QSSQLYLETCLPA--LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG-----------~~~~F~~~~~~~~---~~L~--~Spqlylk~li~g--~~rvf 221 (658)
..|+++|.+.||.|++.|.+. ++.-. |.+.--+-|++.+ .-|| .||=.-..+.-.. =-|+|
T Consensus 118 e~i~~iF~~mGF~~~~gp~IE-~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~k~~ 196 (335)
T COG0016 118 EEIEDIFLGMGFTEVEGPEIE-TDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPIKIF 196 (335)
T ss_pred HHHHHHHHHcCceeccCCccc-ccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCceEe
Confidence 489999999999999999763 32211 1111001122221 2333 2332222222111 46899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
.+|+|||++..|. +|+|||.|+|--..-. ++.+++-+++++++.++
T Consensus 197 ~~grvyR~D~~Da-THs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 197 SPGRVYRNDTVDA-THSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred cccceecCCCCCc-ccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 9999999999877 9999999999543333 68888888888777665
No 96
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.03 E-value=1.1e-09 Score=97.51 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhh-hhhcCCCccEEEEEEEeEeCCCCc--cceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTE-HALLLSTESSVQFRGRIEKVPEEN--MKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~-~~~~l~~es~V~v~G~l~~~p~~~--~d~~l~ 143 (658)
.|+|+|||+++|.+|| ++|++|||++|.+|++++.+.. ..+ ....++.||+|.|+|.+...|... +|+.++
T Consensus 1 ~V~v~Gwv~~~R~~gk-~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~ 75 (103)
T cd04319 1 KVTLAGWVYRKREVGK-KAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGE 75 (103)
T ss_pred CEEEEEEEEeEEcCCC-eEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEE
Confidence 3899999999999886 7999999999999999986521 223 234799999999999999876532 555543
No 97
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.99 E-value=2.6e-09 Score=117.63 Aligned_cols=48 Identities=31% Similarity=0.474 Sum_probs=39.7
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
-|+|.||+|||+|..|. +|+|||.|+|--..-. ++.+++.+++++++.
T Consensus 343 ~k~fsigrVfR~d~iDa-tH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~ 392 (492)
T PLN02853 343 KRYFSIDRVFRNEAVDR-THLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSR 392 (492)
T ss_pred cEEEeccceecCCCCCc-ccCccceeEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 38999999999999987 9999999999766543 688888777776654
No 98
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.96 E-value=7.9e-09 Score=85.71 Aligned_cols=75 Identities=33% Similarity=0.468 Sum_probs=62.5
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEV 594 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~v 594 (658)
|+|+|||.+++..++++.|++|.|++|.+||++..+ ........|+.|++|.|+|.+...+ .++++|.++++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~-~~~~~~~~l~~g~~v~v~G~v~~~~-----~~~~~l~~~~i~~ 74 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNE-EYERFREKLKEGDIVRVRGKVKRYN-----GGELELIVPKIEI 74 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETH-HHHHHHHTS-TTSEEEEEEEEEEET-----TSSEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccH-HhhHHhhcCCCCeEEEEEEEEEEEC-----CccEEEEECEEEE
Confidence 789999999955556899999999999999999872 2235667899999999999998765 3469999999988
Q ss_pred E
Q psy8087 595 V 595 (658)
Q Consensus 595 l 595 (658)
|
T Consensus 75 l 75 (75)
T PF01336_consen 75 L 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 99
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.80 E-value=9e-08 Score=101.08 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=67.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccCC-CCc------------cceeeccCCcceeeccCHHHHHHHhcc-cC---CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVE-GGS------------TLFSLNFFGEPAYLTQSSQLYLETCLP-AL---GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~e-G~~------------~~F~~~~~~~~~~L~~Spqlylk~li~-g~---~rvfe 222 (658)
..+|++|...||.|+.||.+...... .+- +.|.+ .....||.|-=--+=+.+. .. -|+||
T Consensus 79 ~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l---~d~~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 79 DEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYI---KDRLLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceee---cCCcceecccHHHHHHHHHhcCCCCceEEE
Confidence 47999999999999999999643100 000 11222 1234566543332222332 33 48999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
||+|||++..+. +|+|||++|+.-+... |+.|+...+|.++..
T Consensus 156 iGrVfr~d~~d~-~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~ 200 (294)
T TIGR00468 156 PGRVFRNDTVDA-THLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKK 200 (294)
T ss_pred ecceEEcCCCCC-ccCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999987643 8999999999987643 677777777777643
No 100
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.68 E-value=2.7e-07 Score=104.18 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=38.4
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+||||+|||+|..+. .|++||+|++..+... ++.+++.++++++.
T Consensus 351 ~rlFeiGrVFR~e~~d~-~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll~ 399 (489)
T PRK04172 351 QKYFSIGRVFRPDTIDA-THLPEFYQLEGIVMGEDVSFRDLLGILKEFYK 399 (489)
T ss_pred eEEEEecceEcCCCCCc-ccCCchheEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 48999999999998754 7899999999999986 56666666666654
No 101
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.54 E-value=2.9e-07 Score=100.01 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=42.6
Q ss_pred CcEEEEeeeeecCC-CCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAEN-SRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~-~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|. .|. +|+++|.|+|.=.+.. ++.|++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~Da-THl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDR-SHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCC-ccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 58999999999995 454 9999999999888776 6899999988888765
No 102
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.54 E-value=1.8e-06 Score=93.89 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred CchHHHhhhC---CcEEEc--CCccccccC----------CCCccceeeccCCcceeec--cCHHHHHHHhc-ccCCcEE
Q psy8087 160 GYPPEVSLAN---GIAKVT--PPTLVQTQV----------EGGSTLFSLNFFGEPAYLT--QSSQLYLETCL-PALGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~---gF~EV~--TPiL~~~~~----------eG~~~~F~~~~~~~~~~L~--~Spqlylk~li-~g~~rvf 221 (658)
..|+++|... ||.+++ .|+-+ .-. ..|.+.--+-|.+...-|| .|+-.- ++| .+-.|++
T Consensus 75 ~~i~~~f~~~~~~gf~~~~~~~~iv~-~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~--~~l~~~~~~~~ 151 (402)
T PLN02788 75 NAIYDYFDENYSNKFKKFDDLSPIVS-TKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQA--ELLRAGHTHFL 151 (402)
T ss_pred HHHHHHHhhcccCCcEEecCCCCccc-hhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHH--HHHHhCCCcEE
Confidence 5899999997 999998 55542 200 0111111122344445554 233221 222 2556999
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
.+|+|||++.+|. +|.|+|.|+|.-+.+
T Consensus 152 ~~g~VyRrD~iD~-tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 152 VTGDVYRRDSIDA-THYPVFHQMEGVRVF 179 (402)
T ss_pred EEeeEeecCCCCc-ccCccceeEEEEEEe
Confidence 9999999999976 999999999988876
No 103
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.33 E-value=2.7e-06 Score=70.37 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=55.1
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
|+|+|||.++++.+++++|+.|.|++|.+|+++..+... .....++.|+.|.|+|.+...+.+.+++.+
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~~~~-~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~ 69 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNEEYE-RFREKLKEGDIVRVRGKVKRYNGGELELIV 69 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHH-HHHHTS-TTSEEEEEEEEEEETTSSEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccHHhh-HHhhcCCCCeEEEEEEEEEEECCccEEEEE
Confidence 799999999977777899999999999999999873211 123479999999999999998776455444
No 104
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.32 E-value=2.7e-05 Score=80.89 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=63.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-----CCccceee-ccCCcceeeccCHHHHHHHhcc-------cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-----GGSTLFSL-NFFGEPAYLTQSSQLYLETCLP-------ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-----G~~~~F~~-~~~~~~~~L~~Spqlylk~li~-------g~~rvfeI~ 224 (658)
+.+++.|.+.||.||.||+|..... . ...+.|++ +--|..+.||--.-.-.=++++ .--|+|++|
T Consensus 10 ~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g 89 (261)
T cd00773 10 DTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIG 89 (261)
T ss_pred HHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEc
Confidence 4789999999999999999965432 1 11235543 3346788888332222222222 124899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|||+|... ..|.-||+|+++|+-..+
T Consensus 90 ~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 90 PVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CEEecCCCC-CCCccceEEeceeeeCCC
Confidence 999999875 367889999999987663
No 105
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.27 E-value=5e-06 Score=84.16 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=73.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCc-------------cceeeccCCcceeeccC--HHHHHHHhcc--cCCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGS-------------TLFSLNFFGEPAYLTQS--SQLYLETCLP--ALGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~-------------~~F~~~~~~~~~~L~~S--pqlylk~li~--g~~rvfe 222 (658)
..+|++|...||.||.|+.++....+-.. .++.+...- ..+||.| |.|. +.+.. .--|+||
T Consensus 8 ~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL-~~l~~N~~~~~lFE 85 (218)
T cd00496 8 EEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQA-RALAKLKPPIRIFS 85 (218)
T ss_pred HHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHH-HHHHhcCCCeeEEE
Confidence 47899999999999999999643111100 011111000 2566644 6654 33332 4569999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
||+|||++..+ ..|+|||+||++.+++. |+.|++..+|.|+..+
T Consensus 86 iG~Vf~~~~~~-~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 86 IGRVYRNDEID-ATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EcCeEECCCCC-CCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999998753 37889999999999998 8999999999998643
No 106
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.20 E-value=2.3e-05 Score=86.09 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=39.9
Q ss_pred EEEEEeCCcc--eeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 366 SVDVLFPNVG--EVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 366 ~fdL~~~G~~--Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
-.|+.++| + ||+|++. -+| +.++..|++++.+- | --||||+|||+|++.|.++||..
T Consensus 280 evdi~~~g-~WiEi~gcG~--v~p----~vl~~~g~~~~~~~--------g----~AfGiGleRlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 280 EIEIWFKD-EWLELCGCGI--IRH----DILLRAGVHPSETI--------G----WAFGLGLDRIAMLLFDIPDIRLF 338 (460)
T ss_pred EEEEEECC-eeEEEeeecc--CcH----HHHHHcCCCccceE--------E----EEEEecHHHHHHHHcCccHHHHH
Confidence 46777777 5 8888875 223 34455677654321 1 15899999999999999999974
No 107
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=97.98 E-value=2.8e-05 Score=75.66 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=71.8
Q ss_pred CchHHHhh-hCCcEEEcCCccccccC---CCC-----ccceeeccCC-cceeeccCHHHHHHHhcc----c----C-CcE
Q psy8087 160 GYPPEVSL-ANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFG-EPAYLTQSSQLYLETCLP----A----L-GDV 220 (658)
Q Consensus 160 ~~iR~fl~-~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~-~~~~L~~Spqlylk~li~----g----~-~rv 220 (658)
+.+++.+. +.||.||.||+|.+... -|. ...|.+..-+ .+++|+-+.+...=.++. . + =++
T Consensus 7 ~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~ 86 (173)
T PF00587_consen 7 RFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKL 86 (173)
T ss_dssp HHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEE
T ss_pred HHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccccCCeEE
Confidence 46788899 99999999999975421 121 1234443323 569999877665444432 1 2 279
Q ss_pred EEEeeeeecCCCC--CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 221 YCIAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 221 feI~~~FR~E~~~--~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|++|+|||+|... +-..+-||+|.|++....+ ++..+..++++..+..
T Consensus 87 ~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 87 YQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp EEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred eecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHH
Confidence 9999999999422 2345679999999998888 8888877777765543
No 108
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.57 E-value=0.00019 Score=74.52 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=69.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeec-cCCcceeeccCHHH-----HHHHhcc--cCC-cEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLN-FFGEPAYLTQSSQL-----YLETCLP--ALG-DVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~-~~~~~~~L~~Spql-----ylk~li~--g~~-rvfe 222 (658)
+.+++.|.+.||.||.||+|..... .|. .+.|.+. .-+.+++|+...+- +...+.. -+. |+|+
T Consensus 39 ~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~ 118 (255)
T cd00779 39 NIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQ 118 (255)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHh
Confidence 5778888889999999999964210 122 2356543 33568899876442 2222222 132 8999
Q ss_pred EeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 223 I~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
+++|||+|..... | .-||+|.|++....+..+.....++++..
T Consensus 119 ~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 119 IQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred CcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 9999999932211 2 24999999999888877776666666543
No 109
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.51 E-value=0.00025 Score=72.08 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=60.9
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCCc-----cceeeccC-----CcceeeccCHHHHHHHhccc-------C-C
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGGS-----TLFSLNFF-----GEPAYLTQSSQLYLETCLPA-------L-G 218 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~~-----~~F~~~~~-----~~~~~L~~Spqlylk~li~g-------~-~ 218 (658)
..+++.|...||.||.||.|.... ..|.. +.|.+..- |..++||-.-....=++... + -
T Consensus 10 ~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~ 89 (235)
T cd00670 10 RFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPL 89 (235)
T ss_pred HHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccchhcCe
Confidence 467888999999999999996543 11211 23433322 46788886555443322221 2 3
Q ss_pred cEEEEeeeeecCCCCC--ccCcceeeeeeeEeecCC
Q psy8087 219 DVYCIAQSYRAENSRT--RRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d 252 (658)
|+|++|+|||+|.... -.-.-||+|.|++.-..+
T Consensus 90 r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 90 RLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred eeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 7999999999998641 112359999999987654
No 110
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.51 E-value=0.00054 Score=71.48 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=72.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----C-ccceeeccC-C----cceeeccCHHHHHHHhcc-------cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----G-STLFSLNFF-G----EPAYLTQSSQLYLETCLP-------AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~-~~~F~~~~~-~----~~~~L~~Spqlylk~li~-------g~- 217 (658)
..+++.+.+.||.||.||.|..... .| . .+.|.+..- + .+++|+-..+--+=.+.. -+
T Consensus 40 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LP 119 (264)
T cd00772 40 NVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLP 119 (264)
T ss_pred HHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccC
Confidence 4788889999999999999965321 11 1 233433222 2 678998776653333222 13
Q ss_pred CcEEEEeeeeecCCCCCcc---CcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRR---HLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
=|+|++++|||+|.... + =.-||+|.|.+....+.++..+.++.++...
T Consensus 120 lrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~ 171 (264)
T cd00772 120 QHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAY 171 (264)
T ss_pred eeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHH
Confidence 28999999999995321 1 1249999999987788888888777777433
No 111
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.44 E-value=0.0002 Score=74.60 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=75.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccCC-----cceeeccCHHHHHHHhcc----c---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFFG-----EPAYLTQSSQLYLETCLP----A---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~~-----~~~~L~~Spqlylk~li~----g---~- 217 (658)
+.+++.+.+.||.||.||.|..... ++| .+.|++..-+ .+++|+-..|-.+=.+.. + +
T Consensus 40 ~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LP 119 (261)
T cd00778 40 KILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLP 119 (261)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcC
Confidence 4789999999999999999975432 122 1345543222 368998775544332222 2 2
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
=|+|++++|||+|...+. -=.-||+|.|.|..+.+.+++.+..++++...
T Consensus 120 lr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 120 LKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred HHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 369999999999986420 01349999999999999999988888877543
No 112
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0041 Score=62.71 Aligned_cols=265 Identities=17% Similarity=0.179 Sum_probs=145.0
Q ss_pred chHHHh-hhCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEe
Q psy8087 161 YPPEVS-LANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIA 224 (658)
Q Consensus 161 ~iR~fl-~~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~ 224 (658)
.+-++| ...|.+||..|+|++... |-. .+ |.+... +..+-.-.|---|+...+. || +..|.=.
T Consensus 18 ~Ft~~l~~~L~lieVq~Pils~vg~-G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM 96 (330)
T COG2502 18 TFTQHLEERLGLIEVQAPILSRVGD-GLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHM 96 (330)
T ss_pred HHHHHHHHhcCeEEeecceEeccCC-cccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceeeec
Confidence 344444 456999999999975422 211 12 222221 2224445666778876664 55 6699988
Q ss_pred eeeec-CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHH
Q psy8087 225 QSYRA-ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIE 303 (658)
Q Consensus 225 ~~FR~-E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~ 303 (658)
.+.|. |++-+..|.-=--|-|||....+-+.-+..+.+.+..+...+.......-..++.. .+ .| ..|||..+-+
T Consensus 97 ~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~av~~~~~~~--~~-LP-~~ItFihsee 172 (330)
T COG2502 97 KALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETELAVSAEFGLA--PF-LP-DQITFIHSQE 172 (330)
T ss_pred hhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc-Cc-cceEEeehHH
Confidence 98885 55334578755566677766655555555666666666665554332111222211 00 11 3466665555
Q ss_pred HHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEe--------CCCCCC-CCCCccCC-CCcCc-eeEEEEE--
Q psy8087 304 YLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR--------FPADIK-SFYMSKCP-ENPAL-TESVDVL-- 370 (658)
Q Consensus 304 ~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~--------~P~~~~-pfy~~~~~-~~~~~-~~~fdL~-- 370 (658)
+...+ |++. .+.-|..+.+.++ .+|++. +|...+ |=|.-.+. ...++ ...=|++
T Consensus 173 L~~ry----P~L~--------~k~RE~ai~Ke~g-AvFligIGg~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDilvw 239 (330)
T COG2502 173 LVARY----PDLD--------PKGRERAIAKELG-AVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVW 239 (330)
T ss_pred HHHhC----CCCC--------cchhhHHHHHhhC-cEEEEecccccCCCCcCCCCCCCccccCCcccccccccCCcEEEe
Confidence 54332 2111 1222344443332 345543 233322 21211110 00000 1223333
Q ss_pred ----eCCcceeeeceeccCCHHHHHHHHHHcCC-CCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 371 ----FPNVGEVIGGSMRIWDPEELLAGYKREGI-DPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 371 ----~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~-~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
=.++ |+.+.+.|. |...+++.+.-.|. |...+.|-=..+.--+|-|-|-|||=.||+|+|+...+|-+|..=.
T Consensus 240 n~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~sV 317 (330)
T COG2502 240 NPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQASV 317 (330)
T ss_pred chhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeeecc
Confidence 3367 888888886 44556666665543 2234566666666668999999999999999999999999986543
No 113
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.35 E-value=0.0012 Score=76.07 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=73.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-C-----Cccceee-ccCCcceeeccCHH-----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-G-----GSTLFSL-NFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-G-----~~~~F~~-~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfe 222 (658)
+.+|+.|.+.||.||.||.|..... + | +.+.|.+ +-.|..++|+-..| ++...+.. .+ -|+|+
T Consensus 55 ~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyq 134 (568)
T TIGR00409 55 NIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQ 134 (568)
T ss_pred HHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEE
Confidence 5899999999999999999975321 1 1 2346654 34467889986433 22222222 13 38999
Q ss_pred EeeeeecC-CCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH---HHHHHHH
Q psy8087 223 IAQSYRAE-NSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI---CDTVDRV 271 (658)
Q Consensus 223 I~~~FR~E-~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li---~~i~~~~ 271 (658)
|++|||+| ..+.. | .-||+|.|.|.-..+..+.....+.|+ ..+++.+
T Consensus 135 i~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 135 IQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred eeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 32221 2 249999999999888766665666554 5555554
No 114
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.29 E-value=0.0012 Score=76.10 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=72.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-C-----Cccceee-ccCCcceeeccCHHHHHHHhcc----c---C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-G-----GSTLFSL-NFFGEPAYLTQSSQLYLETCLP----A---L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-G-----~~~~F~~-~~~~~~~~L~~Spqlylk~li~----g---~-~rvfe 222 (658)
+.+|+.|.+.||.||.||+|..... + | +.+.|.+ +-.+.+++|+-..|-..=.++. + + -|+|+
T Consensus 55 ~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yq 134 (565)
T PRK09194 55 NIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQ 134 (565)
T ss_pred HHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEE
Confidence 5889999999999999999963321 1 1 2346655 4446789998644422222221 2 2 38999
Q ss_pred EeeeeecCC-CCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH---HHHHHHH
Q psy8087 223 IAQSYRAEN-SRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI---CDTVDRV 271 (658)
Q Consensus 223 I~~~FR~E~-~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li---~~i~~~~ 271 (658)
|++|||.|. .... | .-||+|.|+|....+-.+.....++++ ..+++.+
T Consensus 135 i~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 135 IQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred eeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999993 2111 2 249999999998876665555455554 4555544
No 115
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.26 E-value=0.0011 Score=70.49 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=65.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHH-----HHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYL-----ETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlyl-----k~li~--g~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... .|. .+.|.++.-|..++||-..+-.. +.... .+ -|+|++
T Consensus 38 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~ 117 (298)
T cd00771 38 DFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEF 117 (298)
T ss_pred HHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEe
Confidence 4778888999999999999964421 121 23455544456788875444332 22222 13 289999
Q ss_pred eeeeecCCCCC----ccCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT----RRHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 224 ~~~FR~E~~~~----~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|+|||+|.... .|- -||+|.|++.-.. .++..+.+++++.
T Consensus 118 g~vfR~E~~~~~~Gl~R~-reF~q~e~~i~~~-~e~~~~e~~e~l~ 161 (298)
T cd00771 118 GTVHRYEQSGALHGLTRV-RGFTQDDAHIFCT-PDQIKEEIKGVLD 161 (298)
T ss_pred cCcccCCCCCCCCCcccc-ccEEECCEEEEeC-CcchHHHHHHHHH
Confidence 99999997632 122 4999999998633 3444444444443
No 116
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.24 E-value=0.00095 Score=73.64 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC------ccceee-ccCCcceeeccC--HHHHHHHhcc----c-CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG------STLFSL-NFFGEPAYLTQS--SQLYLETCLP----A-LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~------~~~F~~-~~~~~~~~L~~S--pqlylk~li~----g-~~rvf 221 (658)
..+++.|.+.||.||.||+|..... .|. .+.|.. +.-|..+.||-- |++....... . --|+|
T Consensus 22 ~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~ 101 (397)
T TIGR00442 22 ETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENKLLLPKPFKLY 101 (397)
T ss_pred HHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcccccCCCeEEE
Confidence 5789999999999999999943321 111 234543 345677888732 3333211111 1 24899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
++|+|||+|.... .|.-||+|+++|.-..+
T Consensus 102 y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 102 YIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred EEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 9999999998765 45579999999987664
No 117
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.21 E-value=0.0011 Score=73.84 Aligned_cols=106 Identities=20% Similarity=0.361 Sum_probs=73.1
Q ss_pred CchHHHhh-hCCcEEEcCCccccccC-C--CC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEE
Q psy8087 160 GYPPEVSL-ANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~-~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfe 222 (658)
+.+++.+. +.||.||.||.|..... + |- .+.|++. +.++||+-..|..+=.+..+ + =|+|+
T Consensus 178 ~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~ 255 (425)
T PRK05431 178 QFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTA 255 (425)
T ss_pred HHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEE
Confidence 45667777 89999999999975421 1 21 1245543 56889987777666444331 2 37999
Q ss_pred EeeeeecCCCCCc--c----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 223 I~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
+++|||+|..... + =.-||+|.|.+ .|.+-++..+..++|+...-
T Consensus 256 ~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 256 YSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred EcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 9999999974210 1 12499999999 78877888888888776543
No 118
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.14 E-value=0.0015 Score=72.59 Aligned_cols=106 Identities=20% Similarity=0.357 Sum_probs=72.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-C--CC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... + |- .+.|.++ +.++||+-..|..+-.+... + =|+|++
T Consensus 181 ~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~ 258 (418)
T TIGR00414 181 NFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAH 258 (418)
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEE
Confidence 4678888889999999999975432 1 11 1234443 46789988777665544331 2 379999
Q ss_pred eeeeecCCCCCc------cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR------RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~~------rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
++|||+|..... -=.-||+|.|. ..|.+-++..+..++++...-
T Consensus 259 s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 259 SPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred cccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHH
Confidence 999999964211 01249999999 568888888888777776543
No 119
>KOG2784|consensus
Probab=97.13 E-value=0.00039 Score=73.12 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=43.5
Q ss_pred cC--CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 216 AL--GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 216 g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
|| .|+|.|-++||||..|+ +|+.||.|+|--.+-. ++-|+|.++++++.
T Consensus 330 ~f~p~K~FSIDrVFRNEtvDa-THLAEFHQVEGviad~gltLgdLig~l~~ff~ 382 (483)
T KOG2784|consen 330 GFKPAKYFSIDRVFRNETVDA-THLAEFHQVEGVIADKGLTLGDLIGILMEFFT 382 (483)
T ss_pred CCCcccccchhhhhhccccch-HHHHHHhhhceeeecCCCcHHHHHHHHHHHHh
Confidence 65 68999999999999987 9999999999888765 78999998888775
No 120
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.13 E-value=0.0014 Score=72.54 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=62.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC------Cccceee-ccCCcceeeccC--HHHHHHHhcc--cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG------GSTLFSL-NFFGEPAYLTQS--SQLYLETCLP--ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG------~~~~F~~-~~~~~~~~L~~S--pqlylk~li~--g~~rvfeI~ 224 (658)
..+|+.|.+.||.||.||+|..... .| ..+.|+. +--|..+.||-- |++..-..-. .--|+|++|
T Consensus 26 ~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~~~p~r~~~~g 105 (412)
T PRK00037 26 DTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHKLQPFKLYYIG 105 (412)
T ss_pred HHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCCCCCeEEEEEc
Confidence 5789999999999999999943211 11 1234543 234677888743 3333221111 235999999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
++||+|.... .|.-||+|+++|.-..+
T Consensus 106 ~vfR~e~~~~-gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 106 PMFRYERPQK-GRYRQFHQFGVEVIGSD 132 (412)
T ss_pred CccccCCCCC-CcccceEEcCeeeeCCC
Confidence 9999998765 56689999999986554
No 121
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.08 E-value=0.0018 Score=75.97 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCCc-----cceeeccCCcceeeccCHHHHHHHhcc-c------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLP-A------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~-g------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|.... ..|.. +.|.++--+..++|+-..+-..=++.. . + -|+|++
T Consensus 282 ~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~ 361 (639)
T PRK12444 282 AFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEF 361 (639)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEe
Confidence 478888999999999999996442 12322 233222224567888766655444333 1 1 389999
Q ss_pred eeeeecCCCCC--c--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT--R--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~--~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||.|.+.+ . | .-||+|.|++ .|.+-+++....++++..+.
T Consensus 362 g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 362 GQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQID 408 (639)
T ss_pred ccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHHH
Confidence 99999998632 1 2 2499999999 78887777766666665443
No 122
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.06 E-value=0.00069 Score=70.25 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=57.6
Q ss_pred CchHHHhhhCC--cEEEcCCccccccCCCCccceeec-----cCCcceeeccCHH----HHHHHhcc-c---C-CcEEEE
Q psy8087 160 GYPPEVSLANG--IAKVTPPTLVQTQVEGGSTLFSLN-----FFGEPAYLTQSSQ----LYLETCLP-A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~g--F~EV~TPiL~~~~~eG~~~~F~~~-----~~~~~~~L~~Spq----lylk~li~-g---~-~rvfeI 223 (658)
+.+|+.|...| |.||+||+|.+. +.|.+. .-+..+|||--.- ...+++.. . + =|+|||
T Consensus 40 ~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qi 113 (254)
T cd00774 40 SAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQI 113 (254)
T ss_pred HHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhh
Confidence 57888898885 999999999643 556543 2345788875322 22233332 2 2 379999
Q ss_pred eeeeecCCCCC---ccCcceeeeeeeEeecC
Q psy8087 224 AQSYRAENSRT---RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 224 ~~~FR~E~~~~---~rHl~EFt~lE~e~a~~ 251 (658)
|+|||||.+-. .| .-||||.|+|.-..
T Consensus 114 g~~fR~E~~~~~gl~R-~ReF~q~d~~~f~~ 143 (254)
T cd00774 114 GKSFRNEISPRNGLFR-VREFTQAEIEFFVD 143 (254)
T ss_pred chhhccccCcccceee-eccchhhheeeeEC
Confidence 99999997522 12 35999999998653
No 123
>PLN02908 threonyl-tRNA synthetase
Probab=97.04 E-value=0.0021 Score=75.88 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=75.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
..+|+.+.+.||.||.||.|..... .|. .+.|.++--+.+++|+--.+-.+=.+.. + + =|+|++
T Consensus 329 ~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~ 408 (686)
T PLN02908 329 DFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADF 408 (686)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEe
Confidence 4788899999999999999964421 121 1345544345778887655544433322 1 2 279999
Q ss_pred eeeeecCCCCC---ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT---RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 224 ~~~FR~E~~~~---~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+|||+|.+.. -.=.-||||.|++. |.+.+++.+.+++++..+..
T Consensus 409 g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 409 GVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred eccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 99999998732 11134999999998 88888888888888766544
No 124
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.92 E-value=0.0079 Score=50.15 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=56.6
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEV 594 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~v 594 (658)
|+|.|=|.+.+..| +=.|+.|+|++..|.|++-.... ......+..||-|.|.|.+.. +.|.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~-~~~~~~l~~Gd~V~v~G~v~~------~~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG-VRAYPEVEVGDIVRVTGEVEP------RDGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc-cCCcCCCCCCCEEEEEEEEec------CCeEEEEEEeeEEE
Confidence 57889998764443 56889999999999999865422 122346899999999999853 37889999999987
Q ss_pred E
Q psy8087 595 V 595 (658)
Q Consensus 595 l 595 (658)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 125
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.83 E-value=0.0033 Score=72.95 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=76.4
Q ss_pred CchHHHhhhCCcEEEcCCccccc---cCCC-----CccceeeccCCcceeeccCHHHHH-----HHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT---QVEG-----GSTLFSLNFFGEPAYLTQSSQLYL-----ETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~---~~eG-----~~~~F~~~~~~~~~~L~~Spqlyl-----k~li~--g~-~rvfeI 223 (658)
..+++.+.+.||.||.||.|... ..-| +.+.|.+.--+.+++|+-..+... ..... -+ -|+||+
T Consensus 235 ~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~ 314 (613)
T PRK03991 235 DYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYEL 314 (613)
T ss_pred HHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhhee
Confidence 47888889999999999988422 1111 123555543356889886666332 23322 13 479999
Q ss_pred ee-eeecCCCCC---ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHH
Q psy8087 224 AQ-SYRAENSRT---RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRV 271 (658)
Q Consensus 224 ~~-~FR~E~~~~---~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~ 271 (658)
|+ |||+|.+.. -.=.-||||-|.+.-..+.++.++..++++..+..-+
T Consensus 315 ~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 315 STYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred cchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 99 999997532 1123599999999877778999998888887665533
No 126
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.81 E-value=0.019 Score=47.82 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=56.8
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
++|.|-|.++|...++++|++|.|.++.+.|++-.+... .....|..|+.|.|+|.+..... .+++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~-~~~~~l~~g~~v~v~g~v~~~~~----~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNAR-RLGFPLEEGMEVLVRGKVSFYEP----RGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhh-hCCCCCCCCCEEEEEEEEEEECC----CCEEEEEEEEEE
Confidence 678999999986444699999999999999999764221 22346899999999999975321 356888888774
No 127
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=96.80 E-value=0.0028 Score=67.28 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=72.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----CccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... .| +.+.|.++ +.+++|+-..|..+=.+... + =|+|++
T Consensus 60 ~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~ 137 (297)
T cd00770 60 NFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGY 137 (297)
T ss_pred HHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCHhhCCchheec
Confidence 5788999999999999999975421 12 12345543 36789987777666544431 2 479999
Q ss_pred eeeeecCCCC------CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSR------TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~------~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||+|... +---.-||+|.|.+ .|..-++..+..++++....
T Consensus 138 ~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~~ 187 (297)
T cd00770 138 SPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAE 187 (297)
T ss_pred ChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHHH
Confidence 9999999651 11123599999997 56655777766666665443
No 128
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.68 E-value=0.0062 Score=71.44 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=63.8
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC-----ccceee-ccCCcceeeccCHHHH-----HHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG-----STLFSL-NFFGEPAYLTQSSQLY-----LETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~-----~~~F~~-~~~~~~~~L~~Spqly-----lk~li~--g~-~rvfe 222 (658)
+.+++.+...||.||.||+|.... ..|. .+.|.+ +--|..+.||--..-. .+.... .+ -|+|+
T Consensus 278 ~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~ 357 (638)
T PRK00413 278 RYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAE 357 (638)
T ss_pred HHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeee
Confidence 477888899999999999995432 1132 234543 3335778887432222 222211 12 38999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
+|+|||+|.... .| .-||||+|++. |..-+...+.+.+++.
T Consensus 358 ~g~~fR~E~~~~-~~Gl~R~reF~q~~~~~-~g~~~~~~~e~~eii~ 402 (638)
T PRK00413 358 FGTVHRYEPSGA-LHGLMRVRGFTQDDAHI-FCTPEQIEEEVKKVID 402 (638)
T ss_pred ccCeecCCCCCC-CcCcceeeeeEEeeEEE-EcCHHHHHHHHHHHHH
Confidence 999999998742 11 13999999997 6554444433344443
No 129
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.65 E-value=0.0067 Score=69.49 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=72.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
..+|+.+.+.||.||.||.|....- .|.- +.|.++--+.+++|+--..-..=++.. + + =|.||+
T Consensus 176 ~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~ 255 (545)
T PRK14799 176 AFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEF 255 (545)
T ss_pred HHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEe
Confidence 4788888999999999999854321 1211 234333335788888655544433332 2 2 279999
Q ss_pred eeeeecCCCCC----ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT----RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 224 ~~~FR~E~~~~----~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+|||+|.+.. .| .-||||.|+.. |++.+++.+.+.+++.-+..
T Consensus 256 g~vfR~E~sg~l~GL~R-vReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 256 GHVYRWEKKGELYGLLR-VRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred cceecCCCCCCcccccc-ceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 99999998743 12 34999999998 88887777777666655543
No 130
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.64 E-value=0.0073 Score=69.98 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=69.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCHHHH-----HHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSSQLY-----LETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Spqly-----lk~li~--g~-~rvfe 222 (658)
+.+++.+...||.||.||+|..... .|. .+.|.+ +--|..++||--..-. .+.+.. .+ =|.|+
T Consensus 214 ~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~ 293 (575)
T PRK12305 214 DYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAE 293 (575)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEE
Confidence 4778888999999999999964421 132 134543 2335778887432222 222212 12 28999
Q ss_pred EeeeeecCCCCCcc---CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRR---HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 223 I~~~FR~E~~~~~r---Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
+|+|||+|.....+ =.-||+|.|++. |.+.+...+.+.+++..+...
T Consensus 294 ~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 294 FGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred ecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 99999999863211 124999999994 777666666666666554443
No 131
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=96.60 E-value=0.0039 Score=70.37 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=76.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHHHHHHHh----ccc---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQLYLETC----LPA---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spqlylk~l----i~g---~- 217 (658)
+.+++-+.+.||.||.||.|..... +|+ .+.|.+..- +.+++|+-..+-.+=.+ +.+ +
T Consensus 46 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLP 125 (472)
T TIGR00408 46 KILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLP 125 (472)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcC
Confidence 4788888999999999999964321 232 245655443 36899987766544322 222 2
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++++|||+|...+. -=.-||+|-|.+..|.+.++..+.++.++...
T Consensus 126 lr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 126 LKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred HHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 379999999999986420 01359999999999999999888888777543
No 132
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=96.56 E-value=0.011 Score=68.35 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeec-cCCcceeeccCHHHHHHHhcc-c------C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLN-FFGEPAYLTQSSQLYLETCLP-A------L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~-~~~~~~~L~~Spqlylk~li~-g------~-~rvfe 222 (658)
+.+|+.+...||.||.||+|..... .|.. +.|++. --|..++||-..+-..=++.. . + -|+|+
T Consensus 208 ~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~ 287 (563)
T TIGR00418 208 DFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAE 287 (563)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeE
Confidence 5778889999999999999964321 1222 234332 235788998665554333332 1 2 38999
Q ss_pred EeeeeecCCCCCc-----cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR-----RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~~-----rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
+|+|||+|.. +. |- -||+|.|+|.-.. .++.....++++.
T Consensus 288 ~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~~~-~~~~~~e~~~~i~ 332 (563)
T TIGR00418 288 LGYSHRYEQS-GELHGLMRV-RGFTQDDAHIFCT-EDQIKEEFKNQFR 332 (563)
T ss_pred eccccCCCCC-cCCcCcccc-cceEEeeeEEEcC-HHHHHHHHHHHHH
Confidence 9999999954 31 32 3999999997654 4444444344443
No 133
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=96.51 E-value=0.006 Score=69.03 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=75.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+++.|...||.||.||.|..... +++ .+.|.+..- +.+++|+-..| +|...+.. -+
T Consensus 52 ~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLP 131 (477)
T PRK08661 52 KILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLP 131 (477)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcC
Confidence 4788999999999999999965432 222 234554322 46789987663 33333333 13
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
=|+|++++|||+|.. ++ -=.-||+|.|.+..+.+.++..+.+++++.
T Consensus 132 lrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 132 LLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 379999999999986 42 123599999999999999999888887774
No 134
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=96.34 E-value=0.02 Score=64.20 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=72.3
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC-----ccceee-ccCCcceeeccCH-H----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG-----STLFSL-NFFGEPAYLTQSS-Q----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~-----~~~F~~-~~~~~~~~L~~Sp-q----lylk~li~--g~-~rvfe 222 (658)
+.+|+.+.+.||.||.||.|.... ..|. .+.|.+ +--+.+++|+... + ++...... -+ =|+||
T Consensus 55 ~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q 134 (439)
T PRK12325 55 NIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYH 134 (439)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheE
Confidence 588999999999999999997431 1121 345654 3346678888532 2 33333322 13 58999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
++++||+|.. . +| .-||+|-|.|....+.+++.+..++++...
T Consensus 135 ~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~ 181 (439)
T PRK12325 135 IQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAY 181 (439)
T ss_pred ecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999954 2 33 359999999998888877777666655433
No 135
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.25 E-value=0.035 Score=49.07 Aligned_cols=77 Identities=25% Similarity=0.347 Sum_probs=61.6
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
-..|+|.|=|.+.+.++++-+|++|+|+...|+|++-..... ... ..++.|+-|.|.|.+.--+ +.|.+++.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~-~i~~~~l~~G~~V~v~g~~~~y~----~~G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRAR-RIRGFDLKDGDKVLVRGRVSFYE----PRGSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHh-hCCCCCCCCCCEEEEEEEEEEEC----CCcEEEEEEE
Confidence 378999999999998556899999999999999999753211 111 3689999999999996644 2577999998
Q ss_pred EEE
Q psy8087 591 YWE 593 (658)
Q Consensus 591 ~i~ 593 (658)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 875
No 136
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=96.22 E-value=0.017 Score=64.49 Aligned_cols=91 Identities=9% Similarity=0.162 Sum_probs=61.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC-C-----ccceee-ccCCcceeecc--CHHHHH---HHhcc--cC-CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG-G-----STLFSL-NFFGEPAYLTQ--SSQLYL---ETCLP--AL-GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG-~-----~~~F~~-~~~~~~~~L~~--Spqlyl---k~li~--g~-~rv 220 (658)
..+++.|...||-||+||+|-.... .| . .+.|.. +.-|..+.||- .|.+.. ..... .. -|.
T Consensus 26 ~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~ 105 (430)
T CHL00201 26 DKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKMDYHSNLQRL 105 (430)
T ss_pred HHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccccccCCCeEE
Confidence 5788999999999999999954321 12 1 234543 33467788872 222221 21111 12 399
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
|++|+|||.|.....|- -||||+++|.-..
T Consensus 106 ~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~ 135 (430)
T CHL00201 106 WYSGPMFRYERPQSGRQ-RQFHQLGIEFIGS 135 (430)
T ss_pred EEEcceecCCCCcCCcc-ceeEEeceEEECC
Confidence 99999999998766666 4999999998765
No 137
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.20 E-value=0.015 Score=64.21 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-C---Cccceee-cc-CCcceeecc--CHHHHHHHhcc-c------CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-G---GSTLFSL-NF-FGEPAYLTQ--SSQLYLETCLP-A------LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G---~~~~F~~-~~-~~~~~~L~~--Spqlylk~li~-g------~~rvf 221 (658)
+.+++.|.+.||.||+||+|-.... . | ..+.|.. +. -|..+.||- .+++- ++++ . --|+|
T Consensus 25 ~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~ia--R~~a~~~~~~~~p~r~~ 102 (391)
T PRK12292 25 RRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIA--RIAATRLANRPGPLRLC 102 (391)
T ss_pred HHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHH--HHHHHhccCCCCCeEEE
Confidence 5889999999999999999943211 1 1 1234543 22 366777772 22322 2222 1 23899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC-H---HHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT-F---DDLLDKLEDLICD 266 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~---~~~m~~~e~li~~ 266 (658)
.+|+|||.|.... -+.-||+|+.+|.-..+ . -|++.++-+.+..
T Consensus 103 y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 103 YAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKA 150 (391)
T ss_pred eeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHH
Confidence 9999999997654 44579999999987653 2 3455555444443
No 138
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.15 E-value=0.049 Score=47.35 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccch--HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQT--EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~--~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
|++-|+|.++...+..+. +.|.|++|.|-+.+-...... .....+..|+.|.|.|.+..- .|...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~------~g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSF------QGKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEccc------CCeeEEEEEEE
Confidence 789999999998875555 699999999998886433211 234579999999999999432 36678888888
Q ss_pred EEEecC
Q psy8087 593 EVVGLA 598 (658)
Q Consensus 593 ~vls~~ 598 (658)
..+...
T Consensus 75 ~~v~d~ 80 (95)
T cd04478 75 RPVTDF 80 (95)
T ss_pred EEeCCc
Confidence 866643
No 139
>PLN02837 threonine-tRNA ligase
Probab=96.08 E-value=0.017 Score=67.51 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=71.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceeecc-CCcceeeccCHHH-----HHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNF-FGEPAYLTQSSQL-----YLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~-~~~~~~L~~Spql-----ylk~li~--g~-~rvfe 222 (658)
+.+++....+||.||.||.|..... -| +.+.|++.. -+..+.|+.+.+- |++.+.. -+ -|++|
T Consensus 255 ~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~ 334 (614)
T PLN02837 255 DSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAE 334 (614)
T ss_pred HHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEe
Confidence 4678888889999999999975421 12 123444321 2344566655443 2333322 13 47999
Q ss_pred EeeeeecCCCCCcc----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRR----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 223 I~~~FR~E~~~~~r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+++|||+|.+.. + =.-||+|.|.+. |.+.++..+..++++..+..
T Consensus 335 ~~~~~R~E~~g~-~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 335 LGTVYRYELSGS-LHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred ecccccCCCCCC-CcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 999999997522 1 124999999995 99988888888888875543
No 140
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.08 E-value=0.023 Score=59.91 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=64.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC---Cccceee-ccCCcceeeccCHHHHHH--Hhcc------c-CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG---GSTLFSL-NFFGEPAYLTQSSQLYLE--TCLP------A-LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG---~~~~F~~-~~~~~~~~L~~Spqlylk--~li~------g-~~rvfeI~~~ 226 (658)
+.+++.|...||-||+||++-....-+ ..+.|.. +.-|..+.|| |++=.+ ++++ . --|.|.+|++
T Consensus 27 ~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LR--pD~T~~iaR~~a~~~~~~~~p~r~~Y~g~v 104 (281)
T PRK12293 27 NVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLR--ADSTLDVVRIVTKRLGRSTEHKKWFYIQPV 104 (281)
T ss_pred HHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEEC--CcCCHHHHHHHHHhcccCCCceeEEEeccE
Confidence 578889999999999999995332211 1234543 2345667776 333222 1221 1 2389999999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDT 267 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i 267 (658)
||.|. .||+|+.+|.-.. +..|++.++-+.+..+
T Consensus 105 fR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 105 FRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred EecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 99873 4999999999887 4655555555544433
No 141
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=95.97 E-value=0.023 Score=60.72 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=61.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC---ccceee-ccCCcceeecc--CHHHHHHHhcc---c---CCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG---STLFSL-NFFGEPAYLTQ--SSQLYLETCLP---A---LGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~---~~~F~~-~~~~~~~~L~~--Spqlylk~li~---g---~~rvfeI~ 224 (658)
..+++.|.++||.||+||+|..... .++ .+.|+. +.-|..+.||- .|++-. .+.. + --|+|++|
T Consensus 16 ~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR-~~~~~~~~~~~p~r~~y~g 94 (314)
T TIGR00443 16 RQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIAR-AVSTRLRDRPLPLRLCYAG 94 (314)
T ss_pred HHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHH-HHHHhcccCCCCeEEEEec
Confidence 5789999999999999999854321 111 234533 33467777873 344322 2221 2 35899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
+|||.|.... -+.-||+|+.+|.-..
T Consensus 95 ~VfR~~~~~~-gr~re~~Q~g~Eiig~ 120 (314)
T TIGR00443 95 NVFRTNESGA-GRSREFTQAGVELIGA 120 (314)
T ss_pred eEeecCCCcC-CCcccccccceEEeCC
Confidence 9999998744 5678999999998655
No 142
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=95.89 E-value=0.05 Score=45.30 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=48.2
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
++|.|-|.++|...++++|++|.|.++.+.+++-.+....+ ...+..|+.|.|.|.+...+
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~~~-~~~l~~g~~v~v~g~v~~~~ 62 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNARRL-GFPLEEGMEVLVRGKVSFYE 62 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhhhC-CCCCCCCCEEEEEEEEEEEC
Confidence 67899999988744459999999999999998877643221 13689999999999998543
No 143
>PLN02678 seryl-tRNA synthetase
Probab=95.88 E-value=0.028 Score=62.77 Aligned_cols=107 Identities=13% Similarity=0.208 Sum_probs=63.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc-------cceeeccCCcceeeccCH-----HHHHHHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS-------TLFSLNFFGEPAYLTQSS-----QLYLETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~-------~~F~~~~~~~~~~L~~Sp-----qlylk~li~--g~-~rvfeI 223 (658)
+.+++++..+||.||.||.|..... +|.+ +.|++.--|.+.||.-.. -+|....+. -+ =|++++
T Consensus 182 ~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~ 261 (448)
T PLN02678 182 NFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGY 261 (448)
T ss_pred HHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCceeEEe
Confidence 4777888889999999999965421 2211 234442222345554321 122222222 13 479999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
++|||+|.+... + -.-+|+++|.+ .|..-++ ..+..|+|+...
T Consensus 262 s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 262 STCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred ccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 999999976211 1 12399999994 4555555 677777777654
No 144
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.87 E-value=0.037 Score=61.13 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=67.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC---ccceee-cc-CCcceeeccCHHHHHH--Hhcc-----c-CCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG---STLFSL-NF-FGEPAYLTQSSQLYLE--TCLP-----A-LGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~---~~~F~~-~~-~~~~~~L~~Spqlylk--~li~-----g-~~rvfe 222 (658)
+.+++.|...||.||+||++-.... . |. ...|.. +. -|..+.|| |++=.. ++++ . --|.|.
T Consensus 29 ~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LR--pD~T~~iaR~~a~~~~~~~p~R~~Y 106 (392)
T PRK12421 29 RRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVR--ADITPQVARIDAHLLNREGVARLCY 106 (392)
T ss_pred HHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEEC--CcCCHHHHHHHHhhcCCCCceEEEE
Confidence 5789999999999999999953321 1 21 124443 22 25566676 232222 2221 1 358999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC-HH---HHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT-FD---DLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~---~~m~~~e~li~~i 267 (658)
+|+|||.+.....|. -||+|+.+|.-..+ .. |++.++-+.++.+
T Consensus 107 ~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 107 AGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred eeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 999999987654454 69999999987763 33 6666666555543
No 145
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.78 E-value=0.079 Score=46.10 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=55.1
Q ss_pred EEEEEEEeeecC-CCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEE
Q psy8087 516 TIFGWVHRLRRQ-GKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 516 ~v~GwI~~~R~~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
+|.|.|.+.+.+ .++=.|+.|.|+++.|.|++-.....+ .....|..||-|.|.|.+.. .+ .|.+++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~--------y~-ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRP--------GT-TLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEec--------CC-EEEEEEEE
Confidence 689999988653 235688899999999999887543211 34457999999999999832 12 68999999
Q ss_pred EEecC
Q psy8087 594 VVGLA 598 (658)
Q Consensus 594 vls~~ 598 (658)
+++..
T Consensus 73 ~~glg 77 (91)
T cd04482 73 VIRLA 77 (91)
T ss_pred ECCCc
Confidence 87654
No 146
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=95.78 E-value=0.056 Score=57.50 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=63.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC------CCCccceee-ccCCcceeeccCHHHHHH--Hhcc------cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV------EGGSTLFSL-NFFGEPAYLTQSSQLYLE--TCLP------ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~------eG~~~~F~~-~~~~~~~~L~~Spqlylk--~li~------g~~rvfeI~ 224 (658)
+.+++.|..+||.||+||+|..... +...+.|+. +--|..+.|| |++=.+ ++++ -..|+|.+|
T Consensus 18 ~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR--~D~T~~iaR~~a~~~~~~~~~r~~y~g 95 (311)
T PF13393_consen 18 SKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALR--PDLTVPIARYVARNLNLPRPKRYYYIG 95 (311)
T ss_dssp HHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE---SSSHHHHHHHHHHCCGSSSSEEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccC--CCCcHHHHHHHHHhcCcCCCceEEEEc
Confidence 5789999999999999999954321 111234433 3346667776 333322 2222 247899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC-HH---HHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FD---DLLDKLEDLIC 265 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~---~~m~~~e~li~ 265 (658)
++||.+.... .+.-||+|+.+|.-..+ .. |++.++-+++.
T Consensus 96 ~vfR~~~~~~-g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 96 PVFRYERPGK-GRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp EEEEEETTTT-TBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred ceeeccccCC-CCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999997644 45579999999988764 43 55555555554
No 147
>PLN02530 histidine-tRNA ligase
Probab=95.70 E-value=0.04 Score=62.56 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=60.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc-c-----C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP-A-----L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~-g-----~-~rvfe 222 (658)
..+++.|...||-||+||+|-.... .|. .+.|.. +.-|..+.|| |++=.. ++++ . + -|.|+
T Consensus 92 ~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y 169 (487)
T PLN02530 92 DHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALR--PELTPSLARLVLQKGKSLSLPLKWFA 169 (487)
T ss_pred HHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecC--CCCcHHHHHHHHhcccccCCCeEEEE
Confidence 5789999999999999999954211 121 124533 3346667776 344333 2222 1 2 38999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|+|||.|.....| .-||+|+.+|.-..+
T Consensus 170 ~g~vfR~e~~q~gr-~REf~Q~giEiiG~~ 198 (487)
T PLN02530 170 IGQCWRYERMTRGR-RREHYQWNMDIIGVP 198 (487)
T ss_pred EcCEEcCcCCCCCC-ccceEEcCeeEeCCC
Confidence 99999999865444 469999999987653
No 148
>PLN02972 Histidyl-tRNA synthetase
Probab=95.36 E-value=0.071 Score=62.84 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=65.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC--ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG--STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~--~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+++.|..+||.||+||+|-.... .|. .+.|.+ +.-|..+.|| |++=.. ++++ . --|.|+||++
T Consensus 349 ~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLR--PDlTvPiAR~vA~n~~~p~KrYyiG~V 426 (763)
T PLN02972 349 SIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGITSFKRYQIAKV 426 (763)
T ss_pred HHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeC--CCChHHHHHHHHhCCCCcceEEEeccE
Confidence 4788999999999999999843211 111 234533 3345666776 333332 3332 1 2478889999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC-C----HHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL-T----FDDLLDKLEDLICD 266 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~-d----~~~~m~~~e~li~~ 266 (658)
||.|.... -+.-||+|+++|.... + --|++.++-+.+..
T Consensus 427 FR~e~pqk-GR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 427 YRRDNPSK-GRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred EecCCCCC-CCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 99997644 3457999999999875 2 13455555555443
No 149
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.075 Score=59.02 Aligned_cols=103 Identities=13% Similarity=0.217 Sum_probs=67.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCc------cceee-ccCCcceeeccCHHHH--HHHhcc------c-CCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGS------TLFSL-NFFGEPAYLTQSSQLY--LETCLP------A-LGD 219 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~------~~F~~-~~~~~~~~L~~Spqly--lk~li~------g-~~r 219 (658)
+.+|+-+.+-||.||.||++-.... -|.. +.+.. +--|..+.|| ||+= .=++++ . --|
T Consensus 26 ~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR--pe~Tapv~R~~~en~~~~~~p~k 103 (429)
T COG0124 26 STIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR--PELTAPVARAVAENKLDLPKPLK 103 (429)
T ss_pred HHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEec--ccCcHHHHHHHHhccccccCCee
Confidence 5889999999999999999843321 1221 12222 2235677777 3432 112222 2 248
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHH
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLIC 265 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~ 265 (658)
.|.+|||||.|.....|- =||+|+++|.-..+ --|++.++-+++.
T Consensus 104 ~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~ 152 (429)
T COG0124 104 LYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILE 152 (429)
T ss_pred EEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHH
Confidence 999999999999888787 49999999998863 2355555555444
No 150
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=95.19 E-value=0.062 Score=59.96 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=67.1
Q ss_pred CchHHHhhhCCcEEEcCCcccccc--CC--CCc-----cceee-ccCCcceeeccCHHHHHH--Hhcc---c--CC-cEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ--VE--GGS-----TLFSL-NFFGEPAYLTQSSQLYLE--TCLP---A--LG-DVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~--~e--G~~-----~~F~~-~~~~~~~~L~~Spqlylk--~li~---g--~~-rvf 221 (658)
..+++.|...||.||.||+|.... .. |+. +.|.+ +.-|..+.|| |++=.. ++++ . .. |.|
T Consensus 26 ~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LR--pD~T~~iaR~va~~~~~~~p~r~~ 103 (423)
T PRK12420 26 RALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALR--YDLTIPFAKVVAMNPNIRLPFKRY 103 (423)
T ss_pred HHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceeccc--ccccHHHHHHHHhCcCCCCCeeEE
Confidence 578999999999999999996432 11 211 23432 3336666666 333333 2222 1 22 899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICD 266 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~~ 266 (658)
++|+|||.|.... -+.-||+|+.+|.-..+ --|++.++-+.++.
T Consensus 104 y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 104 EIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred EEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 9999999997654 45679999999987652 24555555555543
No 151
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.15 E-value=0.032 Score=62.54 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=66.1
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
+.+.++....|++|.|.|-|..++..+ +-+-++|+|++|.+++-+..... ....-.+..||+|.|+|.|....
T Consensus 203 ~~i~~id~~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~aG-vRAyP~IevGdiV~ViG~V~~r~----- 275 (715)
T COG1107 203 TLIDDLDEMIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEAG-VRAYPEIEVGDIVEVIGEVTRRD----- 275 (715)
T ss_pred ccHHHHHhhcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccCC-cccCCCCCCCceEEEEEEEeecC-----
Confidence 345556668999999999999998876 56667999999999988754211 12233699999999999996543
Q ss_pred CCceEEEEEEEEEEe
Q psy8087 582 PGGHELKVDYWEVVG 596 (658)
Q Consensus 582 ~g~~El~~~~i~vls 596 (658)
|.+-|.+..++.|.
T Consensus 276 -g~lQiE~~~me~L~ 289 (715)
T COG1107 276 -GRLQIEIEAMEKLT 289 (715)
T ss_pred -CcEEEeehhhHHhh
Confidence 66777777777664
No 152
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.04 E-value=0.12 Score=42.80 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=51.8
Q ss_pred EEEEEEeee----cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 517 IFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 517 v~GwI~~~R----~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+.|.|.+++ ..|+.++|+.|.|++|.+.|++-.+.. ......+..|..|.|.|.+... .+.+++.+.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~~~-~~~~~~l~~g~~v~v~G~v~~~------~~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPETY-EKYRDLLKEDALLLVEGKVERR------DGGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHHHH-HHHHHHhcCCCEEEEEEEEEec------CCceEEEeecc
Confidence 556665532 345568999999999999999875321 0234568999999999999542 25688888777
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
..+.
T Consensus 75 ~~~~ 78 (84)
T cd04485 75 EDLE 78 (84)
T ss_pred ccHH
Confidence 6543
No 153
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.03 E-value=0.12 Score=56.61 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=63.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC---ccceee-ccCCcceeeccCHHHHHH--Hh-cc----cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG---STLFSL-NFFGEPAYLTQSSQLYLE--TC-LP----ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~l-i~----g~~rvfeI~ 224 (658)
..+++.|...||.||+||++-.... .|. ...|.. +.-|..+.|| |++=.. ++ +. .--|.|.+|
T Consensus 12 ~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pD~T~piaR~~~~~~~~~p~R~~Y~g 89 (373)
T PRK12295 12 EALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLR--PDFTIPVCRRHIATAGGEPARYAYLG 89 (373)
T ss_pred HHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeC--CCCcHHHHHHHHHcCCCCCeEEEEEc
Confidence 4788999999999999999954321 111 124433 2335667776 222222 11 11 235899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC-C-H---HHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL-T-F---DDLLDKLEDLICD 266 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~-d-~---~~~m~~~e~li~~ 266 (658)
+|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..
T Consensus 90 ~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 90 EVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred cEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 99999832 2 36999999999774 3 2 2666666555543
No 154
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=94.90 E-value=0.017 Score=63.60 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=42.0
Q ss_pred CCChhhhcccceeeeechhhHHHHHH-----HHHHHHHHHHHhhcCCcEEecCC
Q psy8087 610 EALPDVQLDNRHIMIRGENTSRVLLM-----RSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 610 ~~~~e~r~~~R~LdLR~~~~~~ifr~-----Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..+.|+++++| |.+..+++|.+ .+.+.+.+|++|...||.||.||
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TP 228 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSP 228 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECC
Confidence 34678999999 88999999999 99999999999999999999998
No 155
>PLN02320 seryl-tRNA synthetase
Probab=94.90 E-value=0.065 Score=60.42 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=68.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc-c-------ceeeccCCcceeeccCHH-----HHHHHhcc-c-C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS-T-------LFSLNFFGEPAYLTQSSQ-----LYLETCLP-A-L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~-~-------~F~~~~~~~~~~L~~Spq-----lylk~li~-g-~-~rvfe 222 (658)
+.+++++..+||.||.||.|..... +|.+ . +|+++ +.++||.-..| +|....+. . + =|+++
T Consensus 241 ~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~ 318 (502)
T PLN02320 241 NWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVA 318 (502)
T ss_pred HHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhhCCceeEE
Confidence 4566667788999999999975431 2222 1 12222 45678732222 45544443 2 3 58999
Q ss_pred EeeeeecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 223 I~~~FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+++|||.|.+.. +-| +|++.|... |..-++..+..++|+..+-.
T Consensus 319 ~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 319 FSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred eccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 999999996522 224 899999875 57788888888888876543
No 156
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=94.89 E-value=0.061 Score=60.54 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=37.3
Q ss_pred cEEEEeeeeecCCCCCccCc----ceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 219 DVYCIAQSYRAENSRTRRHL----AEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl----~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+.|+|+|||||-+ + +|- -||||.|.+ .|.+.+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 79999999999976 4 543 799999997 788888877766666654433
No 157
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=94.85 E-value=0.3 Score=42.60 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=50.7
Q ss_pred EEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-------------------hHHhccCCCCcEEEEEEEEEecCC
Q psy8087 517 IFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-------------------TEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 517 v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-------------------~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
|-|+|.+++.... -.-+.|.|++|.|-|++=..... .+....+..|++|.|.|.+..=
T Consensus 2 ivG~V~sv~~~~~-~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~f-- 78 (92)
T cd04483 2 ILGTVVSRRERET-FYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTY-- 78 (92)
T ss_pred eEEEEEEEEecCC-eEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEecc--
Confidence 6799999988764 45579999999999888543210 0244569999999999999542
Q ss_pred CCCCCCceEEEEEEEE
Q psy8087 578 GKSAPGGHELKVDYWE 593 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~ 593 (658)
.|...|.++.+.
T Consensus 79 ----rg~~ql~i~~~~ 90 (92)
T cd04483 79 ----RGEREINASVVY 90 (92)
T ss_pred ----CCeeEEEEEEEE
Confidence 355667766554
No 158
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.66 E-value=0.57 Score=38.94 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=49.9
Q ss_pred eecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEec
Q psy8087 524 LRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 524 ~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~ 597 (658)
....|+.++++.|.|++|.+.+++-.+.. .....+..|..|.|+|.+... .+..++.+.++..+..
T Consensus 13 ~tk~g~~~~~~~l~D~tg~i~~~~f~~~~--~~~~~l~~g~~v~v~G~v~~~------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 13 TAKNGKPYLALTLQDKTGEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEEY------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred cccCCCcEEEEEEEcCCCeEEEEEcCCCh--hhHhhCCCCCEEEEEEEEEEe------CCceeEEEEEEEECCc
Confidence 33446679999999999999999975332 234579999999999999542 3467888888876553
No 159
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=94.26 E-value=0.29 Score=40.77 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
|.|.|-|.+.++.|+. .|+.|.|+.+.|.|++-+..... ....+..|+-|.|.|.+.. |.+.+.+.+
T Consensus 1 v~v~GeVs~~~~~~GH-vyfsLkD~~a~i~cv~f~~~~~~-~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v 67 (73)
T cd04487 1 VHIEGEVVQIKQTSGP-TIFTLRDETGTVWAAAFEEAGVR-AYPEVEVGDIVRVTGEVEP-RDGQLQIEV 67 (73)
T ss_pred CEEEEEEeccccCCCC-EEEEEEcCCEEEEEEEEchhccC-CcCCCCCCCEEEEEEEEec-CCeEEEEEE
Confidence 4788988876655555 78899999999999886543211 1235889999999999986 776655554
No 160
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=94.24 E-value=0.42 Score=38.04 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=50.9
Q ss_pred EEEEEEeeecCC--CceEEEEEEeCC-EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 517 IFGWVHRLRRQG--KGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 517 v~GwI~~~R~~G--kkl~Fi~Lrd~~-~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+.|.|.+++... +..+++.|.|.+ +.+.|++-.+... .....+..|+.|.|+|.+... .+...+.+.++
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~~-~~~~~~~~g~~v~v~g~v~~~------~~~~~l~~~~~ 73 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELAE-ELENLLKEGQVVYIKGKVKKF------RGRLQLIVESI 73 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHHH-HHHhhccCCCEEEEEEEEEec------CCeEEEEeeee
Confidence 678888886654 579999999999 9999998764221 223468999999999999642 25566766544
No 161
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=93.70 E-value=0.8 Score=40.82 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=48.8
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
...+..|+|.|.|.+.-..-+ +.++|.+|.|+|-++.+. +. -..+++++-|.|.|.+-+.- ...+|.
T Consensus 31 ~~Dd~~V~L~G~Iv~~l~~d~----Y~F~D~TG~I~VeId~~~--w~-g~~vt~~~~Vri~GeVDk~~------~~~~Id 97 (103)
T PF04076_consen 31 AKDDTPVTLEGNIVKQLGDDK----YLFRDATGEIEVEIDDDV--WR-GQTVTPDDKVRISGEVDKDW------NKTEID 97 (103)
T ss_dssp S-SSEEEEEEEEEEEEEETTE----EEEEETTEEEEEE--GGG--ST-T----TTSEEEEEEEEEEET------TEEEEE
T ss_pred CcCCCeEEEEEEEEEEecCCE----EEEECCCCcEEEEEChhh--cC-CcccCCCCEEEEEEEEeCCC------CceEEE
Confidence 356789999999877644432 789999999999987542 11 23589999999999996432 457888
Q ss_pred EEEEE
Q psy8087 589 VDYWE 593 (658)
Q Consensus 589 ~~~i~ 593 (658)
|+.|+
T Consensus 98 V~~I~ 102 (103)
T PF04076_consen 98 VDRIE 102 (103)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 162
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=93.63 E-value=0.3 Score=54.75 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=59.6
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|+|+|.|.++|. .|+.++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .+.+.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~-~~~~~l~~~~~v~v~G~v~~~------~~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYE-RISELLQVDARLIIWGKVDRR------DDQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999999864 355699999999999999999864321 233468999999999999642 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 352 liv~~i~~l 360 (449)
T PRK07373 352 LIVEDAEPI 360 (449)
T ss_pred EEEeEeecH
Confidence 777776544
No 163
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=93.57 E-value=0.43 Score=46.63 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=56.2
Q ss_pred ecccCCccCCcEEEEEEEEEeee-cCCCceEEEEEEeCCEEEEEEEcCCccchHHh----ccCCCCcEEEEEEEEEecC
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLR-RQGKGLMFVTLRDGSGFIQCVLADILCQTEHA----LLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R-~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~----~~L~~gs~V~V~G~v~~~~ 576 (658)
.++.......+.|+|.|-|.+.+ ..|.++.|+.|.|++|+|-++++.+...+-.. --+..|++|.|+|.+..-+
T Consensus 42 ~i~eg~G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yr 120 (204)
T COG4085 42 TINEGDGRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYR 120 (204)
T ss_pred EEecCCceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeC
Confidence 34444555677899999999998 56668999999999999999998764433111 1367999999999986644
No 164
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=93.55 E-value=0.42 Score=49.60 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=55.2
Q ss_pred CcEEEEEEEEEeeecC----CCceEEEEEEeCCE--EEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 512 DKRVTIFGWVHRLRRQ----GKGLMFVTLRDGSG--FIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~----Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
=+.|+|.|.|..+... . +-+|+.|-|++| .|.|++..+... ...+..+ .|++|.|+|++. .+
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs--------r~ 135 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS--------RN 135 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE--------SS
T ss_pred cEEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc--------cC
Confidence 3578999999988644 3 588999999999 899999854211 1223445 999999999995 46
Q ss_pred ceEEEEEEEEEEec
Q psy8087 584 GHELKVDYWEVVGL 597 (658)
Q Consensus 584 ~~El~~~~i~vls~ 597 (658)
..+|.++.+.++..
T Consensus 136 ~~ql~ve~i~~~~~ 149 (256)
T PF10451_consen 136 ERQLDVERIELVRD 149 (256)
T ss_dssp SEEEEEEEEEEETS
T ss_pred cEEEEEEEEEccCC
Confidence 78999999997754
No 165
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=93.50 E-value=0.31 Score=43.05 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=53.6
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC-CCCccceEe
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV-PEENMKVQL 142 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~-p~~~~d~~l 142 (658)
..|+|.|-|.+.+.+.++-+|++|.|+...|+|++-...........++.|+-|.|.|.+.-= +.|.+.+.+
T Consensus 22 ~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v 94 (99)
T PF13742_consen 22 PNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIV 94 (99)
T ss_pred CCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEE
Confidence 679999999999996666799999999999999987653211111358999999999999753 344344443
No 166
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=93.34 E-value=0.59 Score=42.50 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=59.3
Q ss_pred cceeeccc-CCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC
Q psy8087 499 AVRIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 499 ~~~~~i~~-~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
++...+.+ ...+.+..|++.|-|.+.-..- =+..||.+|.|+|.++...-. -..+++.|-|.+.|.+-+.
T Consensus 43 ~~~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D----~y~FrD~sGeI~VeIdd~~w~---g~tv~P~dkV~I~GevDk~-- 113 (128)
T COG3111 43 AKVTTVDQAKTLHDDAWVSLEGNIVRQIGDD----RYVFRDASGEINVDIDDKVWN---GQTVTPKDKVRIQGEVDKD-- 113 (128)
T ss_pred cceeEHHHhhccccCCeEEEEeeEEEeeCCc----eEEEEcCCccEEEEecccccC---CcccCcccEEEEEeEEcCC--
Confidence 33444443 3556789999999997653332 268899999999999864211 1359999999999999431
Q ss_pred CCCCCCceEEEEEEEEEE
Q psy8087 578 GKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~vl 595 (658)
-...||.|+.|+.+
T Consensus 114 ----~~~~eIdV~~I~k~ 127 (128)
T COG3111 114 ----WNSVEIDVKHIEKL 127 (128)
T ss_pred ----CccceeEhhheEec
Confidence 24578888888764
No 167
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=93.24 E-value=0.44 Score=46.60 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred CCccCCcEEEEeEEeecce-ecCCCeEEEEEEcCCeEEEEEEecccchhhh----hhcCCCccEEEEEEEeEeCCCCccc
Q psy8087 65 PAGYIITNINIPAIPGPPA-IPGKGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQFRGRIEKVPEENMK 139 (658)
Q Consensus 65 ~~~~~~~~v~~~Grv~~~r-~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~----~~~l~~es~V~v~G~l~~~p~~~~d 139 (658)
..+...+.|+|.|-|.+.+ ++|.++.|+.|.|++|.|-+++..+.-+... .--+..|.+|.|+|.+..-+.. .+
T Consensus 46 g~G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~-~e 124 (204)
T COG4085 46 GDGRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS-SE 124 (204)
T ss_pred CCceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC-ce
Confidence 4556778899999999988 7888899999999999999988876422111 1135689999999999876554 56
Q ss_pred eEecCC
Q psy8087 140 VQLIHP 145 (658)
Q Consensus 140 ~~l~~p 145 (658)
+++++|
T Consensus 125 Vkvnq~ 130 (204)
T COG4085 125 VKVNQP 130 (204)
T ss_pred eeccCc
Confidence 666653
No 168
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=93.16 E-value=0.73 Score=40.87 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=52.1
Q ss_pred CCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 507 GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 507 ~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
+..+.|+.|++-|+|.+.+... +.+.+..| .++|.++... .+..+-.|.|.|++ .+..
T Consensus 10 L~~f~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~-------~~~~~~~vEViG~V---------~~~~ 68 (101)
T cd04479 10 LSQFVGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL-------DLPISGYVEVIGKV---------SPDL 68 (101)
T ss_pred HHhhCCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC-------CcccCCEEEEEEEE---------CCCC
Confidence 3567899999999999998652 45555554 8999988643 36778899999999 3456
Q ss_pred EEEEEEEEEEec
Q psy8087 586 ELKVDYWEVVGL 597 (658)
Q Consensus 586 El~~~~i~vls~ 597 (658)
+|.+..+.-++.
T Consensus 69 ~I~~~~~~~~g~ 80 (101)
T cd04479 69 TIRVLSYIDFGD 80 (101)
T ss_pred eEEEEEEEECCC
Confidence 788777765543
No 169
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=93.09 E-value=0.34 Score=42.00 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=47.4
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
|++.|+|.++...+..+.| .|.|++|.|-+..-..... ......+..|+.|.|.|.++.-..
T Consensus 2 v~~vG~V~~~~~~~~~~~~-tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~g 65 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITY-TIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQG 65 (95)
T ss_pred EEEEEEEEeeeEcccEEEE-EEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccCC
Confidence 7899999999988776555 9999999998877543321 012346889999999999986543
No 170
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=93.00 E-value=0.12 Score=58.60 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred cEEE-EeeeeecCCCC--CccCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 219 DVYC-IAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 219 rvfe-I~~~FR~E~~~--~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|+ .|+|||+|... .-.=.-||+|.|+. .|++.+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7999 56999999521 11113499999999 889999999999999844
No 171
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=92.90 E-value=0.43 Score=53.81 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=49.4
Q ss_pred ceeeccCHHHHHHHhccc-------C-CcEEEEe-eeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 199 PAYLTQSSQLYLETCLPA-------L-GDVYCIA-QSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 199 ~~~L~~Spqlylk~li~g-------~-~rvfeI~-~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
.++|+-+.+..+=.+..+ + -++|++. +|||.|...+ -.=.-||+|.|+-. +++.++..+..++++...
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELA 387 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 577888888766433321 2 4689955 7999998432 11234999999999 899999999999988644
No 172
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=92.64 E-value=1.6 Score=36.91 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=44.7
Q ss_pred EEEEEEEEeeecCCC-ceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGK-GLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 515 V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~ 573 (658)
|.++|-|.++|...+ +- |+.|-|.+|.+.|++.++... +.....|..+.+|.|+|.+.
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~ 61 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVS 61 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEe
Confidence 678899988872211 34 999999999999999876443 13445689999999999994
No 173
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=92.16 E-value=0.62 Score=37.02 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=44.6
Q ss_pred EeEEeecceecC--CCeEEEEEEcCC-eEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 75 IPAIPGPPAIPG--KGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 75 ~~Grv~~~r~~g--k~l~Fi~LrD~~-~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+.|.|..++... +..+++.|.|.+ +.+.+++-.+....+ ...+..|+.|.+.|.+...
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~~~~-~~~~~~g~~v~v~g~v~~~ 62 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELAEEL-ENLLKEGQVVYIKGKVKKF 62 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHHHHH-HhhccCCCEEEEEEEEEec
Confidence 567777776654 578999999999 999999877543222 1358899999999999764
No 174
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.94 E-value=0.33 Score=53.73 Aligned_cols=104 Identities=19% Similarity=0.359 Sum_probs=66.1
Q ss_pred chHHHhhhCCcEEEcCCccccccC-CCCcc--ceeeccC---CcceeeccCHHHHHHHhccc-------C-CcEEEEeee
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQV-EGGST--LFSLNFF---GEPAYLTQSSQLYLETCLPA-------L-GDVYCIAQS 226 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~-eG~~~--~F~~~~~---~~~~~L~~Spqlylk~li~g-------~-~rvfeI~~~ 226 (658)
.+=++..++||.|+.+|.|+.... -|.+. -|.=+.| +.++||.-..|.-+=-+..+ + -+++-.++|
T Consensus 183 f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~c 262 (429)
T COG0172 183 FMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPC 262 (429)
T ss_pred HHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccccCCeeeEEEChh
Confidence 334445578999999999975432 22221 1222222 22688887777665544432 2 357778999
Q ss_pred eecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 227 FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
||-|.... +.| +|.++|.-. |+..++-.+..|+|+...
T Consensus 263 FR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 263 FRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred hhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 99996532 235 999999744 567777777777777654
No 175
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=91.92 E-value=0.73 Score=53.29 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C----CCc-cceee-ccCC-cceeeccC--HHHHHHHhc--ccC--CcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E----GGS-TLFSL-NFFG-EPAYLTQS--SQLYLETCL--PAL--GDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e----G~~-~~F~~-~~~~-~~~~L~~S--pqlylk~li--~g~--~rvfeI~ 224 (658)
..+|++|...||.|+-|..|+.... + ... .+..+ |-.. ...+||.| |.|..-..- .+. -|+||||
T Consensus 366 ~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG 445 (552)
T PRK09616 366 RAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIG 445 (552)
T ss_pred HHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEEEee
Confidence 4789999999999999999964311 0 000 11221 2222 23467765 444433221 122 3799999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
+||+++..+ ..|..|++++-+-++.. |+.++...+|.|+.
T Consensus 446 ~Vf~~~~~~-~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 446 DVVLIDEST-ETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred EEEecCCcc-ccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999987632 25777999999888774 78888888888775
No 176
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=91.49 E-value=0.9 Score=39.48 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCC
Q psy8087 73 INIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 73 v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p 134 (658)
++|.|-|.+.+++ |+. +|+.|.|+++.|.+++-+..... .....+..||-|.|.|.+..-+
T Consensus 1 ~~v~GeVs~~~~~~~sGH-~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~ 64 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGH-VFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT 64 (91)
T ss_pred CEEEEEEeCCeecCCCCC-EEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecCC
Confidence 3689999988764 544 78899999999999876543110 1123689999999999997644
No 177
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.46 E-value=0.7 Score=57.59 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|+|+|.|.++|. .|+.++|++|.|.+|.+.+++..+... .....|..|.+|.|+|.+.... .+.+.
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~-~~~~~l~~~~~~~v~g~v~~~~-----~~~~~ 1063 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYE-KYRSLLNEDNIVLIKGRVSLRE-----DEEPK 1063 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEecC-----CCceE
Confidence 4778999999999864 344599999999999999999864321 2334689999999999996432 24577
Q ss_pred EEEEEEEEEe
Q psy8087 587 LKVDYWEVVG 596 (658)
Q Consensus 587 l~~~~i~vls 596 (658)
+.++.+.-+.
T Consensus 1064 ~~~~~~~~l~ 1073 (1151)
T PRK06826 1064 LICEEIEPLV 1073 (1151)
T ss_pred EEEeeeecHh
Confidence 8887776554
No 178
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=91.33 E-value=0.92 Score=47.61 Aligned_cols=89 Identities=11% Similarity=-0.076 Sum_probs=56.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--CCCc----cce-ee-ccCCcceeecc--CHHHHHHHhcc----cCCcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--EGGS----TLF-SL-NFFGEPAYLTQ--SSQLYLETCLP----ALGDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--eG~~----~~F-~~-~~~~~~~~L~~--Spqlylk~li~----g~~rvfeI~~ 225 (658)
..+++.|...||-||+||++-.... .++. ..+ .+ +.-|+.+.||- .|++-. +++ +..|.|.+|+
T Consensus 15 ~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR--~~a~~~~~~~Rl~Y~g~ 92 (272)
T PRK12294 15 TAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLR--YYSMYPTAATKVAYAGL 92 (272)
T ss_pred HHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHH--HHHhcCCCCceEEEecc
Confidence 4789999999999999999943221 1111 112 12 22367778872 333333 222 3459999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCCHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLD 258 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~ 258 (658)
+||++. +|+|+-+|.-..+.....+
T Consensus 93 VfR~~~--------~~~Q~GvEliG~~~~a~~e 117 (272)
T PRK12294 93 IIRNNE--------AAVQVGIENYAPSLANVQQ 117 (272)
T ss_pred EeccCC--------CcceeceEEECCCchhHHH
Confidence 999863 4899999987644333333
No 179
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=91.32 E-value=1.6 Score=40.23 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
...+..|++.|.|.+.-..-. +.++|++|.|+|-++.+ .|. ..++++|-|.|.|.|-+. -+..||
T Consensus 54 ~~Ddt~V~L~G~Iv~~l~~d~----Y~F~D~TG~I~VeId~~----~w~G~~v~p~d~V~I~GeVDk~------~~~~~I 119 (126)
T TIGR00156 54 MHDGASVTLRGNIISHIGDDR----YVFRDKSGEINVVIPAA----VWNGREVQPKDMVNISGSLDKK------SAPAEV 119 (126)
T ss_pred CCCCCEEEEEEEEEEEeCCce----EEEECCCCCEEEEECHH----HcCCCcCCCCCEEEEEEEECCC------CCCeEE
Confidence 456889999999987654432 78999999999998753 222 258999999999999421 234678
Q ss_pred EEEEEE
Q psy8087 588 KVDYWE 593 (658)
Q Consensus 588 ~~~~i~ 593 (658)
.|+.|+
T Consensus 120 dV~~I~ 125 (126)
T TIGR00156 120 DVTHIQ 125 (126)
T ss_pred EEEEEE
Confidence 887775
No 180
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=91.28 E-value=0.59 Score=43.78 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
..+.|+.|.|.|.|..+.....+-.++.+.+.++ .++|.++.+.........|+.|+.|.|+|...
T Consensus 63 ~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~ 130 (144)
T PF12869_consen 63 KKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICT 130 (144)
T ss_dssp HHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE--
T ss_pred hhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEE
Confidence 3456999999999999976333445555655444 38888876543223344699999999999984
No 181
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=90.88 E-value=0.72 Score=41.13 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=43.9
Q ss_pred ccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 56 EVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
+++++.. ...++.|+|.|+|.+.-. + . -| .++|.+|.|+|-++.+. |.-..+++.+-|.+.|.+-+
T Consensus 24 TV~~a~~----~~Dd~~V~L~G~Iv~~l~-~-d-~Y-~F~D~TG~I~VeId~~~---w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 24 TVAQAKN----AKDDTPVTLEGNIVKQLG-D-D-KY-LFRDATGEIEVEIDDDV---WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp -HHHHTT----S-SSEEEEEEEEEEEEEE-T-T-EE-EEEETTEEEEEE--GGG---STT----TTSEEEEEEEEEE
T ss_pred eHHHHhh----CcCCCeEEEEEEEEEEec-C-C-EE-EEECCCCcEEEEEChhh---cCCcccCCCCEEEEEEEEeC
Confidence 4555533 256788999999988553 2 2 35 78999999999998764 33356899999999999984
No 182
>PRK10053 hypothetical protein; Provisional
Probab=90.82 E-value=2 Score=39.89 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
-..+..|++.|.|.+.=..-. +.++|++|.|+|-++.+ .|. ..+++.|-|.+.|.+-+ . -...||
T Consensus 58 ~~Dd~~V~L~G~Iv~~lg~d~----Y~F~D~tG~I~VeID~~----~w~G~~v~p~~kV~I~GevDk-----~-~~~~~I 123 (130)
T PRK10053 58 MHDGATVSLRGNLIDHKGDDR----YVFRDKSGEINVIIPAA----VFDGREVQPDQMININGSLDK-----K-SAPPVV 123 (130)
T ss_pred CcCCCeEEEEEEEEEEeCCce----EEEECCCCcEEEEeCHH----HcCCCcCCCCCEEEEEEEECC-----C-CCCeEE
Confidence 456889999999976533322 78899999999999753 222 35999999999999932 2 234788
Q ss_pred EEEEEE
Q psy8087 588 KVDYWE 593 (658)
Q Consensus 588 ~~~~i~ 593 (658)
.|+.|+
T Consensus 124 dV~~i~ 129 (130)
T PRK10053 124 RVTHLQ 129 (130)
T ss_pred EEEEEe
Confidence 888775
No 183
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=90.77 E-value=0.72 Score=38.04 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=37.0
Q ss_pred cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 85 PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 85 ~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.|+.++|+.|.|++|.+.+++-.+....+ ...+..|..|.|.|.+..-
T Consensus 16 ~g~~~~~~~l~D~tg~~~~~~f~~~~~~~-~~~l~~g~~v~v~G~v~~~ 63 (84)
T cd04485 16 KGKRMAFVTLEDLTGSIEVVVFPETYEKY-RDLLKEDALLLVEGKVERR 63 (84)
T ss_pred CCCEEEEEEEEeCCCeEEEEECHHHHHHH-HHHhcCCCEEEEEEEEEec
Confidence 46568999999999999998875432112 2368899999999999863
No 184
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=90.75 E-value=3.9 Score=34.77 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=52.0
Q ss_pred EEEEEEEEee--e--cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCC-CCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 515 VTIFGWVHRL--R--RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 515 V~v~GwI~~~--R--~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
|+|.|-|-.+ | ..|+.+.-+.|.|.+..|-|..-.. ...+....|+ .|+.|.|+|.+....- .+++.+.+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~-~~~~~~~~ik~~G~~v~v~G~v~~D~f----~~e~~~~i 76 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLR-KDEKDKEELKSKGDWVRVRGKVQYDTF----SKELVLMI 76 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEecc-CChhHHhhcccCCCEEEEEEEEEEccC----CCceEEEe
Confidence 7789998765 2 3565666689999998877766542 2223445689 9999999999965331 36777877
Q ss_pred EEEE
Q psy8087 590 DYWE 593 (658)
Q Consensus 590 ~~i~ 593 (658)
..+.
T Consensus 77 ~~i~ 80 (82)
T cd04484 77 NDIE 80 (82)
T ss_pred eeEE
Confidence 7664
No 185
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=90.69 E-value=1.5 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..+..|+|.|-|... .++. .| ..||.+|.|+|-++.+. |.-..+++.+-|.+.|.+-+-
T Consensus 55 ~Dda~V~l~GnIv~q--i~~D-~y-~FrD~sGeI~VeIdd~~---w~g~tv~P~dkV~I~GevDk~ 113 (128)
T COG3111 55 HDDAWVSLEGNIVRQ--IGDD-RY-VFRDASGEINVDIDDKV---WNGQTVTPKDKVRIQGEVDKD 113 (128)
T ss_pred ccCCeEEEEeeEEEe--eCCc-eE-EEEcCCccEEEEecccc---cCCcccCcccEEEEEeEEcCC
Confidence 556789999998763 3433 55 78999999999998764 344579999999999999753
No 186
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=90.59 E-value=0.92 Score=56.61 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=59.3
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|++|+|+|.|.++|. .|+.++|++|.|.+|.+.+++..+... .....|..|.+|.|+|.+... .+...
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~~y~-~~~~~l~~~~~~~v~g~v~~~------~~~~~ 1071 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYE-RLSDHLMTDTRLLVWAKVDRR------DDRVQ 1071 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999999864 344699999999999999999864321 223458999999999999653 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 1072 ~~~~~i~~l 1080 (1170)
T PRK07374 1072 LIIDDCREI 1080 (1170)
T ss_pred EEEeeeecH
Confidence 777777544
No 187
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=90.46 E-value=0.86 Score=56.50 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred cCCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|+|.|.++|. .|++++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .+..
T Consensus 941 ~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~-~~~~~l~~~~~~~v~G~v~~~------~~~~ 1013 (1107)
T PRK06920 941 HKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYI-HFSDKLQEGAIVLVDGTIELR------NHKL 1013 (1107)
T ss_pred cCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCcE
Confidence 34778999999999853 355799999999999999999864321 233468999999999999653 2456
Q ss_pred EEEEEEEEEEe
Q psy8087 586 ELKVDYWEVVG 596 (658)
Q Consensus 586 El~~~~i~vls 596 (658)
.+.++++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777776544
No 188
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=90.28 E-value=1.2 Score=38.91 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=43.1
Q ss_pred EeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-h------------------hhhhcCCCccEEEEEEEeEeCC
Q psy8087 75 IPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-T------------------EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 75 ~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~------------------~~~~~l~~es~V~v~G~l~~~p 134 (658)
|.|.|.++......+ -+.|.|++|.|-|++=..... . .....+..|++|.|.|.++.-.
T Consensus 2 ivG~V~sv~~~~~~~-~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr 79 (92)
T cd04483 2 ILGTVVSRRERETFY-SFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR 79 (92)
T ss_pred eEEEEEEEEecCCeE-EEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC
Confidence 679999988887654 449999999988887543210 0 1123589999999999998643
No 189
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=90.17 E-value=1.1 Score=55.62 Aligned_cols=80 Identities=25% Similarity=0.358 Sum_probs=61.9
Q ss_pred CCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQ--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~--Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
.|+.|+|+|.|..++.. .|+++|+.|-|.+|.+.+++..+... .....|..|.++.|+|.+... .+.+.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~-~~~~~l~~~~~~~v~g~v~~~------~~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWE-RQRREALGARLLLVRGRVQNA------EGVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEEEE
Confidence 47789999999988654 33599999999999999999864321 223458999999999999653 3457888
Q ss_pred EEEEEEEec
Q psy8087 589 VDYWEVVGL 597 (658)
Q Consensus 589 ~~~i~vls~ 597 (658)
++++.-+..
T Consensus 1025 ~~~i~~~~~ 1033 (1046)
T PRK05672 1025 ADRLEDLSP 1033 (1046)
T ss_pred EeeeechHH
Confidence 888876544
No 190
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=89.90 E-value=1.4 Score=48.79 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=62.8
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
=..|+|.|-|.+++...++-.|+.|.|....|+|++-+.... ..--.+..|+-|.|+|.+..-++ .|.+.|.+++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~-~l~f~p~eG~~V~v~G~is~Y~~----rG~YQi~~~~ 97 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR-RLKFRPEEGMQVLVRGKISLYEP----RGDYQIVAES 97 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc-ccCCCccCCCEEEEEEEEEEEcC----CCceEEEEec
Confidence 356999999999987766789999999999999999864321 11124889999999999976552 6899999999
Q ss_pred EEE
Q psy8087 592 WEV 594 (658)
Q Consensus 592 i~v 594 (658)
++.
T Consensus 98 ~~p 100 (440)
T COG1570 98 MEP 100 (440)
T ss_pred CCc
Confidence 884
No 191
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=89.03 E-value=1.3 Score=55.24 Aligned_cols=80 Identities=28% Similarity=0.298 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|++.|.|.++|. .|+.++|++|.|.+|.+.+++-.+... .....|..|++|.|+|.+... .+.+.
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~ye-~~~~~L~~g~iV~V~GkVe~~------~~~~q 1048 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEALE-KYRDLLEEDRIVVVKGQVSFD------DGGLR 1048 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999998865 355699999999999999999864311 233468999999999999652 25577
Q ss_pred EEEEEEEEEec
Q psy8087 587 LKVDYWEVVGL 597 (658)
Q Consensus 587 l~~~~i~vls~ 597 (658)
|.++++.-+..
T Consensus 1049 lii~~I~~L~~ 1059 (1135)
T PRK05673 1049 LTAREVMDLEE 1059 (1135)
T ss_pred EEEeecccHHH
Confidence 88887765544
No 192
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=88.93 E-value=4.3 Score=32.57 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=39.5
Q ss_pred EEEEEEeeec--C-CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 517 IFGWVHRLRR--Q-GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 517 v~GwI~~~R~--~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
+.|.|.+... . |++..-+.+.|+++.+.++.-... ......++.|+.+.|.|++..
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~--~~~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ--PYLKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC--HHHHhcCCCCCEEEEEEEEee
Confidence 5566655422 1 345777889999999999886421 123457999999999999964
No 193
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.70 E-value=0.98 Score=51.20 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=76.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--CC------Cccceee-ccCCcceeeccCHHHHHHHhcc----c---C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--EG------GSTLFSL-NFFGEPAYLTQSSQLYLETCLP----A---L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--eG------~~~~F~~-~~~~~~~~L~~Spqlylk~li~----g---~-~rvfe 222 (658)
+.+|+.|++-|..||--|+|+++.- |. |.+.|.+ +--+.++.|+-..|--.--++. + + =++||
T Consensus 55 ~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQ 134 (500)
T COG0442 55 NIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQ 134 (500)
T ss_pred HHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceee
Confidence 5899999999999999999975311 11 2345543 3336789998777644332221 3 3 47999
Q ss_pred EeeeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|...||+|--.+ ---.-||+|=|.|..++|.+++....++++.
T Consensus 135 i~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 135 IQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred eeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 999999996211 0014699999999999999999998888775
No 194
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=88.67 E-value=2.4 Score=37.70 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=52.7
Q ss_pred cEEEEEEEEEee---ec------CCCceEEEEEEeC-CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC--CC
Q psy8087 513 KRVTIFGWVHRL---RR------QGKGLMFVTLRDG-SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG--KS 580 (658)
Q Consensus 513 ~~V~v~GwI~~~---R~------~Gkkl~Fi~Lrd~-~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~--~~ 580 (658)
..++|+|||.++ |. .| ++.-++|.|. ++.|++.+-.+.. ..+...|..|+++.|+|--.+...+ +.
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~~~-~~f~~~l~eG~vy~i~~~~V~~a~~~y~~ 87 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFNDAV-DKFYDLLEVGKVYYISKGSVKVANKKFNT 87 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehHHH-HHhhcccccccEEEEeccEEeeccccCCC
Confidence 458999999753 32 24 5788999999 8889999976432 1345579999999999554443322 23
Q ss_pred CCCceEEEEEE
Q psy8087 581 APGGHELKVDY 591 (658)
Q Consensus 581 ~~g~~El~~~~ 591 (658)
-+.++||....
T Consensus 88 ~~~~yeI~f~~ 98 (104)
T cd04474 88 LKNDYEITFNR 98 (104)
T ss_pred CCCcEEEEECC
Confidence 34678887654
No 195
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=88.37 E-value=1.1 Score=41.33 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..+..|+|.|.|.+.... . -| ..+|++|.|+|-++.+. |.-..+++++-|.+.|.|-.
T Consensus 55 ~Ddt~V~L~G~Iv~~l~~--d-~Y-~F~D~TG~I~VeId~~~---w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 55 HDGASVTLRGNIISHIGD--D-RY-VFRDKSGEINVVIPAAV---WNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred CCCCEEEEEEEEEEEeCC--c-eE-EEECCCCCEEEEECHHH---cCCCcCCCCCEEEEEEEECC
Confidence 567889999999885532 2 34 78999999999997653 33357899999999999974
No 196
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=88.13 E-value=1.7 Score=53.54 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=58.1
Q ss_pred CcEEEEEEEEEeeec-----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 512 DKRVTIFGWVHRLRR-----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 512 g~~V~v~GwI~~~R~-----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
++.+.+.|+|.+++. .|+.++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .++..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~-~~~~~l~~~~~~~v~G~v~~~------~~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYR-QYKDELKEGKFYYLKGKIQER------DGRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeeE
Confidence 667889999987652 466799999999999999999864321 233468999999999999653 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 957 l~~~~i~~l 965 (1034)
T PRK07279 957 MVLQQIQEA 965 (1034)
T ss_pred EEEeeeecc
Confidence 777776533
No 197
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=88.13 E-value=2.7 Score=35.53 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=43.8
Q ss_pred EEEeEEeeccee--cCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEe
Q psy8087 73 INIPAIPGPPAI--PGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 73 v~~~Grv~~~r~--~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~ 132 (658)
|.++|-|..+|. .|+ - |+.|-|.+|.+.+++..+... .+. ..+..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g~-~-~~~leD~~G~~Ev~~F~~~~~~~~~~-~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGH-R-IVELEDTTGRITVLLTKDKEELFEEA-EDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCC-E-EEEEECCCCEEEEEEeCchhhhhhhh-hhccCCCEEEEEEEEec
Confidence 577788877762 233 4 999999999999999887654 332 35888999999999965
No 198
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=87.70 E-value=1.3 Score=49.67 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCcEEEEeEEeecceec----CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIP----GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~----gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.++.|+|+|.|.+++.. |+.++|+.|.|.+|.+.+++-.+....+. ..+..+.+|.|+|.+...
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~~~~-~~l~~~~~v~v~G~v~~~ 346 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYERIS-ELLQVDARLIIWGKVDRR 346 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 46789999999997744 66699999999999999999876543322 358899999999999863
No 199
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=87.52 E-value=4 Score=33.75 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=38.2
Q ss_pred ecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 84 IPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 84 ~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+.|+.++++.|.|++|.+.+++-.+.. +....+..|..|.|.|.+..-
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~--~~~~~l~~g~~v~v~G~v~~~ 62 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEEY 62 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh--hhHhhCCCCCEEEEEEEEEEe
Confidence 456679999999999999999876432 123468999999999999763
No 200
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=86.33 E-value=5.2 Score=35.86 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=38.9
Q ss_pred cCCccCCcEEEEEEEEEeeecCCCceEEEEEE-eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLR-DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 506 ~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lr-d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.+..+.|+.|+|-|+|.+....|. . +.|+ .+++.++|.++... .+..+.+|.|.|++.
T Consensus 12 ~L~~~~gk~VrivGkv~~~~~~g~--~-~~l~~~d~~~V~v~l~~~~-------~~~~~~~vEviG~V~ 70 (109)
T PF08661_consen 12 MLSQFVGKTVRIVGKVESVDPDGG--S-ATLSTSDGGQVTVSLNPPS-------DEELSKYVEVIGKVN 70 (109)
T ss_dssp GGGGGTTSEEEEEEEEEEE-TTSS--E-EEEE-TTS-EEEEEESS---------SS---SEEEEEEEE-
T ss_pred HHHhhCCCeEEEEEEEeeEcCCCC--E-EEEEcCCCCEEEEEeCCCC-------CCCCCCEEEEEEEEc
Confidence 346789999999999999997764 3 3444 34567888887532 345689999999994
No 201
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=86.30 E-value=4 Score=45.77 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=62.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
..|+|.|=|.+.+.+.++=+|++|.|....|.|++-..... ...-.+..|+-|.|.|.+.--+ ..|.+.|.++++
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~-~l~f~~~~G~~V~v~g~v~~y~----~~G~~ql~v~~i 92 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN-RLKFRPQNGQQVLVRGGISVYE----PRGDYQIICFEM 92 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh-CCCCCCCCCCEEEEEEEEEEEC----CCCcEEEEEEEe
Confidence 37999999999987655678999999999999999765321 1112479999999999996544 268899999999
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
+..+
T Consensus 93 ~~~G 96 (432)
T TIGR00237 93 QPAG 96 (432)
T ss_pred ccCC
Confidence 8643
No 202
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=85.56 E-value=4.9 Score=45.05 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
-..|+|.|=|.+.+.++++=+|++|.|....|-|++-..... ...-.+..|+-|.|.|.+.--+ ..|.+.|.+++
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~-~~~~~~~~G~~v~v~g~~~~y~----~~g~~ql~v~~ 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR-RLKFKPEEGMKVLVRGKVSLYE----PRGDYQLIVEE 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh-cCCCCCCCCCEEEEEEEEEEEC----CCCCEEEEEEE
Confidence 467999999999977655779999999999999999764321 1113589999999999997533 26889999999
Q ss_pred EEEEe
Q psy8087 592 WEVVG 596 (658)
Q Consensus 592 i~vls 596 (658)
++..+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 98654
No 203
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=85.25 E-value=5.4 Score=39.63 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=57.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc-cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL-CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
.|++-|||.++..+- .=+|++|-||+|.|-|-.=... ...+..+.+..+-.|.|.|-++.= .|...|.+..|
T Consensus 68 ~V~fVGvvrni~~~t-tn~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F------~GK~~I~~~~i 140 (258)
T COG5235 68 NVQFVGVVRNIKTST-TNSMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTF------NGKRSISASHI 140 (258)
T ss_pred eEEEEEEEEeeeecc-cceEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeee------CCeeEEehhhe
Confidence 488999999999885 5678899999999998875433 223556678888899999998532 35667777666
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
.-+-
T Consensus 141 ~~I~ 144 (258)
T COG5235 141 SAIE 144 (258)
T ss_pred eecc
Confidence 5543
No 204
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=84.72 E-value=1.8 Score=49.04 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=51.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
.+|++|+|.|-|..++..++- +-..|+|++|.+++-.-.... -.+ -.+..|++|.|+|.+.....
T Consensus 211 ~ig~tV~I~GeV~qikqT~GP-TVFtltDetg~i~aAAFe~aGvRAy--P~IevGdiV~ViG~V~~r~g 276 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGP-TVFTLTDETGAIWAAAFEEAGVRAY--PEIEVGDIVEVIGEVTRRDG 276 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCC-EEEEEecCCCceehhhhccCCcccC--CCCCCCceEEEEEEEeecCC
Confidence 689999999999999999875 555999999999986544211 111 25899999999999987544
No 205
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=84.47 E-value=13 Score=34.47 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=47.7
Q ss_pred cCCcEEEEEEEEE--eeec--CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVH--RLRR--QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~--~~R~--~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|.|+|. ++.. .+..+.| +|.|+...+.|+.++... ..++.|..|.|+|.+.. .|
T Consensus 48 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~P-----d~F~eg~~VVv~G~~~~-------~g-- 112 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPLP-----DLFREGQGVVVEGRLGE-------DG-- 112 (131)
T ss_dssp -TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES--C-----TT--TTSEEEEEEEECC-------TS--
T ss_pred cCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCCC-----ccccCCCeEEEEEEECC-------CC--
Confidence 4789999999998 5533 3446776 778999999999987533 24788999999999821 12
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 113 ~F~A~--~lL~Kcps 125 (131)
T PF03100_consen 113 VFEAT--ELLAKCPS 125 (131)
T ss_dssp EEEEE--EEEETS--
T ss_pred EEEEE--EEEeCCCC
Confidence 34554 45678863
No 206
>PRK10053 hypothetical protein; Provisional
Probab=84.39 E-value=2.6 Score=39.13 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=45.7
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..+..|+|.|.|.+.- |+. -| ..+|++|.|+|-++.+. |.-..+++++-|.+.|.+-+
T Consensus 59 ~Dd~~V~L~G~Iv~~l--g~d-~Y-~F~D~tG~I~VeID~~~---w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 59 HDGATVSLRGNLIDHK--GDD-RY-VFRDKSGEINVIIPAAV---FDGREVQPDQMININGSLDK 116 (130)
T ss_pred cCCCeEEEEEEEEEEe--CCc-eE-EEECCCCcEEEEeCHHH---cCCCcCCCCCEEEEEEEECC
Confidence 5678899999998744 332 34 77999999999998754 33357999999999999975
No 207
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=83.47 E-value=11 Score=35.91 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=53.9
Q ss_pred ccCCcEEEEEEEEE--eeec-CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVH--RLRR-QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~R~-~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
...|+.|+|.|+|. ++.. .+..+.| .|.|++..|.|..++... ..++.|..|.|+|.+.. .|
T Consensus 48 ~~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~lP-----d~F~eg~~VVv~G~~~~-------~g-- 112 (148)
T PRK13254 48 APAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGILP-----DLFREGQGVVAEGRLQD-------GG-- 112 (148)
T ss_pred ccCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCCCC-----ccccCCCEEEEEEEECC-------CC--
Confidence 35799999999995 4543 4446777 779999899999987532 14688999999999931 11
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 113 ~F~A~--~vLaKc~s 125 (148)
T PRK13254 113 VFVAD--EVLAKHDE 125 (148)
T ss_pred eEEEE--EEEecCCC
Confidence 34444 56789975
No 208
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=83.43 E-value=7.2 Score=31.23 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 86 gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
++...-+.+.|+++.+.+++-... .+....++.|+.+.+.|++...
T Consensus 16 ~~~~~~~~~~D~~g~i~~~~F~~~--~~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 16 GRRRLKVTLSDGTGTLTLVFFNFQ--PYLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred CccEEEEEEEcCCCEEEEEEECCC--HHHHhcCCCCCEEEEEEEEeec
Confidence 345777899999999999886521 2233468999999999999864
No 209
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=83.06 E-value=4.1 Score=38.04 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=38.3
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCe--EEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~--~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+.|+.+.|.|.|..+.....+-.++...+..+ .++|.+..+.........|+.|+.|.|.|.+.-.
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE----
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEEee
Confidence 457899999999999977444445655655444 4888887764221122359999999999998653
No 210
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=82.95 E-value=15 Score=33.59 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-------eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-CC
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR-------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-KS 580 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-------d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~~ 580 (658)
.|.|.|||.+ +|. .|+.++=+.|- +.+..+.|++-..... .....|+.||.|.|+|.+....-. +.
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~l~~~~~~d~d 83 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQ-VAADYVKKGSLIGITGSLKFDRWTDRN 83 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHH-HHHHHcCCCCEEEEEEEEEecceEcCC
Confidence 4677777766 343 33333333332 2344577777653221 234569999999999999865321 11
Q ss_pred ---CCCceEEEEEEEEEEecC
Q psy8087 581 ---APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 581 ---~~g~~El~~~~i~vls~~ 598 (658)
.....||.+++++.|++.
T Consensus 84 ~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 84 TGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred CCeEEEEEEEEEeEEEECcCC
Confidence 123489999999999754
No 211
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=82.29 E-value=4 Score=51.08 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCcEEEEeEEeecceec----CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIP----GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~----gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|+|+|.|..+|+. |+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~~~~-~~l~~~~~~~v~g~v~~~ 1057 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYEKYR-SLLNEDNIVLIKGRVSLR 1057 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 46789999999887743 55599999999999999999876433222 358899999999999753
No 212
>KOG2783|consensus
Probab=82.21 E-value=0.7 Score=49.80 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=28.1
Q ss_pred cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 216 ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 216 g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
|.+.---.|-+||-..+++ +|.|=|.++|--.-|.
T Consensus 150 ~~~~flv~~DVyrrdeids-thypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 150 GLDGFLVTGDVYRRDEIDS-THYPVFHQMEGVRLWS 184 (436)
T ss_pred cccccceeeeeeeeccccc-cccceeccccceeEEe
Confidence 4555566788899888876 9999999999877665
No 213
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=82.12 E-value=13 Score=45.30 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CccceecchhHHHHHHhcccCcchh-hHHHHHhhhh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK-YQLIAKAQLK 451 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv-i~f~~k~~lk 451 (658)
+|---|+|+|||+++|-|.+|+=|+ +..|.-..++
T Consensus 213 ~~IDTGmGLERl~~vlqg~~snydtD~f~~ii~~i~ 248 (851)
T TIGR00344 213 KNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIE 248 (851)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHH
Confidence 5667899999999999999999999 5555433333
No 214
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=81.88 E-value=11 Score=32.79 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=31.5
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEEE
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEVV 595 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~vl 595 (658)
++|++-.... ......|+.||.|.|+|.+....-. + .....++|.|++|++|
T Consensus 50 ~~v~~~g~~A-~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLA-ENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHH-HHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecc-cccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 7777765421 2334569999999999999775411 1 1123589999999875
No 215
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=81.84 E-value=15 Score=39.36 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=56.9
Q ss_pred CcEEEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 512 DKRVTIFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 512 g~~V~v~GwI~~~R----~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
|++|..-.-|.++. +.|+.-..+.|.|.+|.|.+.+=.... .....+..|++|.|+|.+..- .|.+.+
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~~--~~~~~~~~g~vv~v~G~v~~y------~g~~Ql 82 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVSP--EDEATYVPETIVHVKGDIINY------RGRKQL 82 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCCh--hhHhhcCCCCEEEEEEEEEEE------CCcceE
Confidence 55665555555542 346567778999999999998854322 335569999999999999643 366778
Q ss_pred EEEEEEEEecC
Q psy8087 588 KVDYWEVVGLA 598 (658)
Q Consensus 588 ~~~~i~vls~~ 598 (658)
.+..+.++++.
T Consensus 83 ~i~~i~~~~~~ 93 (314)
T PRK13480 83 KVNQIRLATEE 93 (314)
T ss_pred EEEEeEECCCC
Confidence 89999887764
No 216
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=81.56 E-value=18 Score=35.25 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=52.0
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEE-e-------------CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 513 KRVTIFGWVHR---LRR--QGKGLMFVTLR-D-------------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-d-------------~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.+|.|.|||.+ +|. .|+.++=+.|- + .+..+.|++-.... ......|+.||.|.|+|.+.
T Consensus 5 N~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~A-E~v~~~LkKGs~V~VeGrL~ 83 (168)
T PRK06863 5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQA-EVAGEYLRKGSQVYVEGRLK 83 (168)
T ss_pred cEEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHH-HHHHHHCCCCCEEEEEEEEE
Confidence 35778888876 454 33333323332 1 11236777665321 13456699999999999998
Q ss_pred ecCCC-CC--CCCceEEEEEEEEEEecC
Q psy8087 574 KVPEG-KS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~-~~--~~g~~El~~~~i~vls~~ 598 (658)
...=. +. ....+||.+++|++|...
T Consensus 84 ~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 84 TRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred eCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 76421 11 123589999999998754
No 217
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.47 E-value=1.9 Score=49.94 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=66.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCcc-----ceeeccCCcceeeccCHH-----HHHHHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGST-----LFSLNFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~~-----~F~~~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfeI 223 (658)
..+|.-..+.||.||.||.|..... .|... .|.+..-+..+.|+...- .|+..+-+ -+ -|++|+
T Consensus 228 ~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~ 307 (589)
T COG0441 228 DYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEF 307 (589)
T ss_pred HHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhc
Confidence 4777778889999999999953321 22211 121222123334433222 33333332 12 489999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
|.|||+|.+.. -| .=+|||=|.-. |+..+.+.+.+.+.+..+..-
T Consensus 308 g~v~R~E~SGa-l~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v 356 (589)
T COG0441 308 GYVYRYEKSGA-LHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEV 356 (589)
T ss_pred ceeecccCcch-hhccccccceeecccce-eccHHHHHHHHHHHHHHHHHH
Confidence 99999998744 44 46899988755 566777777777777665543
No 218
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=81.45 E-value=4.2 Score=50.47 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.3
Q ss_pred CCcEEEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 69 IITNINIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
.+..|+|+|.|..++.. -|+++|+.|.|.+|.+.+++..+..+.+. ..+..+..+.|+|.+... ++.+.+++
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~~~~-~~l~~~~~~~v~g~v~~~-~~~~~~~~ 1025 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQR-REALGARLLLVRGRVQNA-EGVRHLVA 1025 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec-CCeEEEEE
Confidence 46779999999987664 34599999999999999999876533222 358899999999999864 33234444
No 219
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=81.36 E-value=5.8 Score=39.43 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=48.7
Q ss_pred CcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCCCC
Q psy8087 70 ITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEE 136 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p~~ 136 (658)
-..|++.|||+++..+--+ +|+.|.||+|.|-|-.=...... -....+..+-.|.|.|.++.-..|
T Consensus 66 v~~V~fVGvvrni~~~ttn-~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F~GK 132 (258)
T COG5235 66 VTNVQFVGVVRNIKTSTTN-SMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTFNGK 132 (258)
T ss_pred EeeEEEEEEEEeeeecccc-eEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeeeCCe
Confidence 3568999999999988765 88899999999988765433211 112245667799999999876554
No 220
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=81.25 E-value=3.2 Score=51.63 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=51.3
Q ss_pred CCcEEEEeEEeeccee----cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAI----PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~----~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|+|+|.|..+|. .|+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~-~~l~~~~~~~v~G~v~~~ 1009 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFS-DKLQEGAIVLVDGTIELR 1009 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 3568999999988753 366799999999999999999876433322 358899999999999764
No 221
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.07 E-value=4.9 Score=47.76 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred cCCcEEEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+.|+|.|+|.+.... ++.+.-+.+.|++|.+++++-.-. ..|-...++.|..+.|+|++..
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n-~~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN-QPYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC-cHHHHhhCCCCCEEEEEEEEEe
Confidence 457889999998875432 455788899999999999887311 1233356999999999999986
No 222
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.96 E-value=11 Score=44.33 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=68.6
Q ss_pred ceeecccCCccCCcEEEEEEEEEee---ec------CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-
Q psy8087 500 VRIKIKDGEKYRDKRVTIFGWVHRL---RR------QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR- 569 (658)
Q Consensus 500 ~~~~i~~~~~~~g~~V~v~GwI~~~---R~------~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~- 569 (658)
....|.++....+ ..+|+|||.++ |. .| ++.-++|.|.++.|++.+-.+.. ..+...|..|+++.|+
T Consensus 179 ~~~pI~~L~py~~-~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~~~-dkf~~~l~eG~VY~Is~ 255 (608)
T TIGR00617 179 RVMPIASLSPYQN-KWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNEQA-DKFYDIIQEGKVYYISK 255 (608)
T ss_pred ceEEHHHCCCCCC-ceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECchHH-HHHhhhcccCCEEEECc
Confidence 4667877766554 49999999763 32 24 57788999999999999986532 1344579999999997
Q ss_pred EEEEecCCC-CCCCCceEEEEEEEEEEecCC
Q psy8087 570 GRIEKVPEG-KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 570 G~v~~~~~~-~~~~g~~El~~~~i~vls~~~ 599 (658)
|.|...... +.....+||..+...++.+|.
T Consensus 256 ~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 256 GSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred eEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 556443311 123467999998888777764
No 223
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=79.95 E-value=3.9 Score=51.20 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCcEEEEeEEeeccee----cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAI----PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~----~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|+|.|.|..+|+ .|+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~~y~~~~-~~l~~~~~~~v~g~v~~~ 1066 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYERLS-DHLMTDTRLLVWAKVDRR 1066 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 4678999999998764 355699999999999999999876533322 358899999999999864
No 224
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=79.87 E-value=11 Score=35.02 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=40.5
Q ss_pred CCcEEEEeEEee--cceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEe
Q psy8087 69 IITNINIPAIPG--PPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 130 (658)
Q Consensus 69 ~~~~v~~~Grv~--~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l 130 (658)
.++.|+|.|.|. ++.+. +..+.| .|.|+...+.|+......+ .++.|..|.|+|.+
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~Pd-----~F~eg~~VVv~G~~ 108 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPLPD-----LFREGQGVVVEGRL 108 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES--CT-----T--TTSEEEEEEEE
T ss_pred CCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCCCc-----cccCCCeEEEEEEE
Confidence 688999999997 66663 556888 7899999999998875432 36689999999998
No 225
>PRK12366 replication factor A; Reviewed
Probab=79.86 E-value=8.4 Score=45.43 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=61.9
Q ss_pred eecccCCcc-CCcEEEEEEEEEeee---c------CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEE
Q psy8087 502 IKIKDGEKY-RDKRVTIFGWVHRLR---R------QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGR 571 (658)
Q Consensus 502 ~~i~~~~~~-~g~~V~v~GwI~~~R---~------~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~ 571 (658)
.+|.++... .|..++|.|||.++- . .| ++.=+.|.|++|.|.+++-.+... ....|..|+++.|+|-
T Consensus 280 ~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~~d--~~~~l~~G~vy~is~~ 356 (637)
T PRK12366 280 VNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEKAK--ILENLKEGDAVKIENC 356 (637)
T ss_pred eeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCchhh--hhcccCCCCEEEEecC
Confidence 456666555 678999999998863 2 35 677789999999999999765332 2234679999999965
Q ss_pred EEecCCCCCCCCceEEEEEEEEEE
Q psy8087 572 IEKVPEGKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 572 v~~~~~~~~~~g~~El~~~~i~vl 595 (658)
..+.-......+++||.+..-..+
T Consensus 357 ~vk~y~~~~~~~~~El~~~~~s~I 380 (637)
T PRK12366 357 KVRTYYDNEGEKRVDLNAGYSSEI 380 (637)
T ss_pred EEeeccccCCCcCEEEEcCCceEE
Confidence 544221122345788888555433
No 226
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=79.73 E-value=6.9 Score=33.74 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=45.9
Q ss_pred EEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 74 NIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 74 ~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
.+.|.|.+++..+-. +|+.|.|.+|.+++.+.++..+.+. ..|..|+++.+...-.-.|
T Consensus 6 ~l~v~Iks~~~~~~D-~~v~l~DpTG~i~~tiH~~v~~~y~-~~l~~GavLlLk~V~Vf~p 64 (86)
T PF15072_consen 6 CLVVIIKSIVPSSED-AFVVLKDPTGEIRGTIHRKVLEEYG-DELSPGAVLLLKDVTVFSP 64 (86)
T ss_pred EEEEEEEEeeccCCC-eEEEEECCCCcEEEEEeHHHHhhcC-CccccCEEEEEeeeeEEec
Confidence 578889999988875 8999999999999999987654432 3689999998865443333
No 227
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=78.90 E-value=15 Score=36.32 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=38.2
Q ss_pred EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEEEEEecCC
Q psy8087 541 GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 541 ~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i~vls~~~ 599 (658)
..+-|++-..... .....|+.||-|.|+|.+....= .+ .+.-.+||.|+.+++|++..
T Consensus 49 ~fi~v~~fg~~AE-~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~~ 109 (182)
T PRK08486 49 CFIDIRLFGRTAE-IANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSKS 109 (182)
T ss_pred eEEEEEEEhHHHH-HHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCCC
Confidence 3466666543221 23456999999999999986531 11 11235899999999997653
No 228
>PRK02801 primosomal replication protein N; Provisional
Probab=78.79 E-value=27 Score=30.90 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=33.5
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEE
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vl 595 (658)
.|+|++-++... .....|+.|+-|.|+|.+.... .+.....+.|+++.++.+
T Consensus 49 ~i~~va~G~~Ae-~~~~~l~kGs~v~V~G~L~~~~-~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGNQFQ-AITQSITVGSKITVQGFISCHQ-GRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcHHHH-HHHhhcCCCCEEEEEEEEEEeE-CCCCCEEEEEEEEEEEEC
Confidence 378887664321 2234699999999999998621 111122366888888765
No 229
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=77.56 E-value=10 Score=33.97 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=37.0
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEE-cCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLR-DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~Lr-D~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|+.|+|.|+|.+....|+ .| .+. -+++.|+|.+..+. ....+..|.|.|++....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~--~~-~l~~~d~~~V~v~l~~~~-------~~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGG--SA-TLSTSDGGQVTVSLNPPS-------DEELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSS--EE-EEE-TTS-EEEEEESS---------SS---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCC--EE-EEEcCCCCEEEEEeCCCC-------CCCCCCEEEEEEEEcCCC
Confidence 68899999999999775564 44 444 34567888887653 345688999999998643
No 230
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=76.82 E-value=7.4 Score=40.46 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCcEEEEeEEeecceec---CCCeEEEEEEcCCe--EEEEEEecccchh--hhhhcCCCccEEEEEEEeE
Q psy8087 69 IITNINIPAIPGPPAIP---GKGLMFVTLRDGSG--FIQCVLADILCQT--EHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~---gk~l~Fi~LrD~~~--~iQvv~~~~~~~~--~~~~~l~~es~V~v~G~l~ 131 (658)
.-+.|.|.|.|..+.-. ...-+|+.|-|+|| .|.|++....... .....+ .|+.|.|.|.+.
T Consensus 65 PI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs 133 (256)
T PF10451_consen 65 PIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS 133 (256)
T ss_dssp EE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE
T ss_pred ccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc
Confidence 45679999999997654 12468999999999 8999988653211 122245 999999999999
No 231
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=76.34 E-value=27 Score=32.26 Aligned_cols=84 Identities=20% Similarity=0.114 Sum_probs=55.5
Q ss_pred eecccCCccCCcEEEEEEEEEeee-------cCCC-ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLR-------RQGK-GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R-------~~Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v 572 (658)
.+|+++.. -...|.+.|.|.++. +.|. .+.-+.|.|.+|.|.+.+=.+. +..|..||+|.|. |.+
T Consensus 5 ~kI~dL~~-g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~-----a~~l~~GdvV~I~na~v 78 (129)
T PRK06461 5 TKIKDLKP-GMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ-----AGSLKEGEVVEIENAWT 78 (129)
T ss_pred eEHHHcCC-CCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc-----cccCCCCCEEEEECcEE
Confidence 45655542 126788888888432 2221 3666899999999988875432 3458999999999 555
Q ss_pred EecCCCCCCCCceEEEEEE---EEEEec
Q psy8087 573 EKVPEGKSAPGGHELKVDY---WEVVGL 597 (658)
Q Consensus 573 ~~~~~~~~~~g~~El~~~~---i~vls~ 597 (658)
.. - .|.++|.+.+ +..+..
T Consensus 79 ~~-f-----~G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 79 TL-Y-----RGKVQLNVGKYGSISESDD 100 (129)
T ss_pred ee-e-----CCEEEEEECCCEEEEECCc
Confidence 32 1 4778899884 555443
No 232
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=76.26 E-value=5.8 Score=49.74 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCcEEEEeEEeecceec----CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIP----GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~----gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|.+.|-|..++.. |+.++|+.|.|.+|.+.+++-.+....+. ..+..++.|.|.|.+...
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~ye~~~-~~L~~g~iV~V~GkVe~~ 1043 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEALEKYR-DLLEEDRIVVVKGQVSFD 1043 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 46789999999886653 55699999999999999999875432221 358899999999999764
No 233
>PRK15491 replication factor A; Provisional
Probab=75.46 E-value=12 Score=41.13 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=62.3
Q ss_pred eecccCCccCCcEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL-------RRQG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~-------R~~G--kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.+|.++.. ....|+|.|||.++ |..| .++.=++|-|.+|.|++++=.+....-....|..|+++.|.|.+
T Consensus 58 ~kI~dL~~-~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~~~ 136 (374)
T PRK15491 58 TKIADINE-SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISGYA 136 (374)
T ss_pred ccHHHCCC-CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEeeee
Confidence 45666542 34779999999877 3224 15666799999999999986543211011358999999999975
Q ss_pred EecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 573 EKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 573 ~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
... -+.+||.+.....+.+|.
T Consensus 137 ~~~------y~g~Ei~i~~~~~i~~~~ 157 (374)
T PRK15491 137 KEG------YSGIEVNIGRYGGISESD 157 (374)
T ss_pred ccC------cccEEEEeCCCceeeecc
Confidence 321 234899998877777774
No 234
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=75.34 E-value=13 Score=35.43 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=45.5
Q ss_pred cCCcEEEEeEEee--ccee-cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPG--PPAI-PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~--~~r~-~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.|+|.|.|. ++.+ .+..+.| .|.|++..|-|........ .++.|..|.|+|.+..
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~lPd-----~F~eg~~VVv~G~~~~ 110 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGILPD-----LFREGQGVVAEGRLQD 110 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCCCCc-----cccCCCEEEEEEEECC
Confidence 4678999999994 5665 5666788 8899988899888754322 3677999999999963
No 235
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=75.13 E-value=28 Score=33.65 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=52.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e-----CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR------D-----GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr------d-----~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
.|.|.|||.+ +|. .|..++-+.|- + .+..|.|++-..... .....|+.|+-|.|+|.+....=
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae-~~~~~l~KG~~V~VeGrl~~r~y 82 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAE-NLANWAKKGALIGVTGRIQTRNY 82 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHH-HHHHHcCCCCEEEEEEEEEeceE
Confidence 4677777764 342 45445545552 1 123477887654321 23456999999999999986531
Q ss_pred -CC--CCCCceEEEEEEEEEEecC
Q psy8087 578 -GK--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 578 -~~--~~~g~~El~~~~i~vls~~ 598 (658)
.+ .+.-..||.|+++++|.+.
T Consensus 83 ~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 83 ENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred ECCCCCEEEEEEEEEeEEEECCCC
Confidence 11 1113489999999998754
No 236
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=75.06 E-value=1.8 Score=46.60 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=30.1
Q ss_pred hHHHhhcCC-CCccceecchhHHHHHHhcccCcchhh
Q psy8087 407 YTDQRKYGS-TPHGGYGLGLERVLCWLLNQYHVRDKY 442 (658)
Q Consensus 407 yl~a~~~G~-pP~gG~GiGidRL~m~l~g~~~Irdvi 442 (658)
-+...+||. .|---+|+|+|||.|.|.|.++||...
T Consensus 313 P~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mv 349 (536)
T COG2024 313 PIALAEYGIDYPVMNLGLGVERLAMILHGADDVRSMV 349 (536)
T ss_pred hHHHHHcCCCCceeecchhHHHHHHHHhCchHHhhhh
Confidence 355667777 478899999999999999999999854
No 237
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=75.04 E-value=9.6 Score=42.43 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=51.1
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC-CCCc
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV-PEEN 137 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~-p~~~ 137 (658)
..|+|.|-|.+.+....+-.|+.|.|....|+|++-+....... ..+..|.-|.|.|.+.-= |.|.
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~-f~p~eG~~V~v~G~is~Y~~rG~ 90 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLK-FRPEEGMQVLVRGKISLYEPRGD 90 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcccccC-CCccCCCEEEEEEEEEEEcCCCc
Confidence 56999999999997766678999999999999998775432111 247889999999999743 3443
No 238
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=74.73 E-value=36 Score=33.30 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=38.0
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~vls~~ 598 (658)
.+-|++-.... ......|+.||.|.|+|.+....=. + .+...+||.|+.+++|...
T Consensus 48 wi~~v~wgk~A-e~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 48 FINCVIWRKQA-ENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEeCcHH-HHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 37777765432 1234569999999999999876421 1 1112589999999998754
No 239
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=74.58 E-value=5.8 Score=48.99 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=48.9
Q ss_pred CcEEEEeEEeecce----e-cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 70 ITNINIPAIPGPPA----I-PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 70 ~~~v~~~Grv~~~r----~-~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+..+.+.|+|..++ + .|+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~~~~-~~l~~~~~~~v~G~v~~~ 951 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYRQYK-DELKEGKFYYLKGKIQER 951 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 45578888887654 2 477799999999999999999876433222 358899999999999864
No 240
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=74.35 E-value=45 Score=29.91 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=37.1
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC-CC-CCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK-SA-PGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~-~~-~g~~El~~~~i~vls~~ 598 (658)
.+-|++-.... ......|..||.|.|+|.+....- .+ .. ....||.++.+++|++.
T Consensus 48 ~~~v~~wg~~A-e~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 48 FINCVVWRKSA-ENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEehHHH-HHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 36666654321 123456999999999999987542 11 11 12479999999998764
No 241
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=73.98 E-value=47 Score=32.01 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=54.3
Q ss_pred cCCcEEEEEEEEE--eeecCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVH--RLRRQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~--~~R~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|++++|.|.|. ++...+. .+.| +|.|+...|.|..++... ..++.|.-|.|+|.+... |
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilP-----DlFrEG~gVVveG~~~~~-------g-- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGILP-----DLFREGQGVVVQGTLEKG-------N-- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEeccCC-----ccccCCCeEEEEEEECCC-------C--
Confidence 3689999999998 7755432 3565 889999999999887533 247899999999999321 1
Q ss_pred EEEEEEEEEEecCCCC
Q psy8087 586 ELKVDYWEVVGLAPAG 601 (658)
Q Consensus 586 El~~~~i~vls~~~~~ 601 (658)
.+++ =+||.+|+..
T Consensus 120 ~F~A--~evLAKhdek 133 (159)
T PRK13150 120 HVLA--HEVLAKHDEN 133 (159)
T ss_pred EEEE--eEEEeCCCCC
Confidence 2333 3678899753
No 242
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=73.98 E-value=2.4 Score=46.82 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=32.5
Q ss_pred EEEEEeCCcce-eeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHH
Q psy8087 366 SVDVLFPNVGE-VIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCW 431 (658)
Q Consensus 366 ~fdL~~~G~~E-i~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~ 431 (658)
-|+.+.+|.|+ |++|+. |+.+.++| |. -.|..||+||+|||+.+
T Consensus 275 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 275 VFEGYVDGVGNPIASGGR----YDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred EEEEEECCCCCcccCCcc----hhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 58899987766 777763 56666666 21 13788999999999984
No 243
>KOG2324|consensus
Probab=73.77 E-value=7 Score=42.10 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=75.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceee-ccCCcceeeccCHHHHHHHhccc-C--------CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSL-NFFGEPAYLTQSSQLYLETCLPA-L--------GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~-~~~~~~~~L~~Spqlylk~li~g-~--------~rvf 221 (658)
..++.-|.+-|-.+|.-|+|++..- .| |.+.|.+ +--|+.+.|.-.-|=-.-.+|+. . =+||
T Consensus 60 ~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vY 139 (457)
T KOG2324|consen 60 RLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVY 139 (457)
T ss_pred HHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEee
Confidence 5788899999999999999964311 11 4567754 55688888887777666666652 2 2699
Q ss_pred EEeeeeecCCCCC----ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHh
Q psy8087 222 CIAQSYRAENSRT----RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVM 272 (658)
Q Consensus 222 eI~~~FR~E~~~~----~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~ 272 (658)
|||+=||+|- +. -| --||.|=|+|.=-.|-++.|+ +-.++..+...+.
T Consensus 140 QigrKfRDEl-rpRfGLlR-gREFlMKDmYsFd~~~etA~q-Ty~~v~~aY~~iF 191 (457)
T KOG2324|consen 140 QIGRKFRDEL-RPRFGLLR-GREFLMKDMYSFDSDEETAQQ-TYQLVDQAYDRIF 191 (457)
T ss_pred eechhhhhcc-Cccccchh-hHHHHHhhhhcccCCHHHHHH-HHHHHHHHHHHHH
Confidence 9999999994 11 12 249999999974446666665 4455555555554
No 244
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=73.35 E-value=29 Score=41.26 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred cCCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 510 YRDKRVTIFGWVHRLRRQ--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~~--Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
..|+.|+|.|.|.+.+.. ++++.-+.+.|++|.++++.-.-.. ....+.++.|+.+.|+|++..
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n~-~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFNQ-PYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccCc-HHHHhhCCCCCEEEEEEEEEe
Confidence 458999999999876433 4467788999999999998873111 122457999999999999965
No 245
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=73.34 E-value=45 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=36.8
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i~vls~~ 598 (658)
.+.|++-.... ......|+.||.|.|+|.+....- .+ .+...++|.|+.|+.|+-.
T Consensus 44 wi~v~awg~~A-e~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 44 WCRCNIWGNRY-DKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEhHHH-HHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 46676654321 123456999999999999986531 11 1123589999999998543
No 246
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=73.04 E-value=9.6 Score=37.74 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=53.9
Q ss_pred CchHHHhhhCCcEEEcCCcccccc-CC----CCccceee-ccCC-cceeeccC--HHHHHHHh--cc-cC--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ-VE----GGSTLFSL-NFFG-EPAYLTQS--SQLYLETC--LP-AL--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~-~e----G~~~~F~~-~~~~-~~~~L~~S--pqlylk~l--i~-g~--~rvfeI~~ 225 (658)
..+|++|...||.||-|..++... .. +...+..+ |-.. .--+||.| |.|..-.. .. +. -|+||||+
T Consensus 7 ~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFEiG~ 86 (198)
T cd00769 7 RKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFEIGR 86 (198)
T ss_pred HHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEEeEe
Confidence 368999999999999999996431 10 00011111 1111 11234433 33332211 11 22 37999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLIC 265 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~ 265 (658)
||..+.. +..|.+.|=+-.+. .|+.|+-..+|.|+.
T Consensus 87 vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~ 135 (198)
T cd00769 87 VFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLR 135 (198)
T ss_pred EEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHH
Confidence 9976431 22344444333322 267777777777664
No 247
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=72.78 E-value=29 Score=28.96 Aligned_cols=54 Identities=22% Similarity=0.151 Sum_probs=39.7
Q ss_pred ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEEecCCCCCCCCceEEEEEEEE
Q psy8087 530 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 530 kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
++.=+.|.|.+|.|.+++=.... ...+..|++|.++ |.+..- .|.++|.+.+..
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~~----~~~~~~G~vv~i~~~~v~~~------~g~~ql~i~~~~ 77 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEKA----ADDLEPGDVVRIENAYVREF------NGRLELSVGKNS 77 (82)
T ss_pred EEEEEEEECCCCEEEEEEECchh----cccCCCCCEEEEEeEEEEec------CCcEEEEeCCce
Confidence 56678899999999888865322 4569999999999 777432 367888776543
No 248
>PRK14699 replication factor A; Provisional
Probab=72.44 E-value=18 Score=41.21 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=58.8
Q ss_pred eecccCCccCCcEEEEEEEEEee-------ecCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL-------RRQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~-------R~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.+|+++.. .++.|+|.|+|.++ |..|+ +++=+.|-|.+|+|-+++=.+....-....|..||+|.|.|.+
T Consensus 58 ~kI~di~~-~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~a~~~~~g~l~~GDvv~I~~~~ 136 (484)
T PRK14699 58 VKIENITP-ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNMADLIKAGKIKAGQTLQISGYA 136 (484)
T ss_pred ccHhHccC-CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCccchhhhcCCCCCCEEEEccee
Confidence 35655432 34789999999887 33443 4555689999999998885433211111259999999999965
Q ss_pred EecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 573 EKVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 573 ~~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
+. + .+++||.+.+..++.++
T Consensus 137 r~---~---~~g~el~~~~~~~i~~~ 156 (484)
T PRK14699 137 KQ---G---YSGVEVNIGNNGVLTES 156 (484)
T ss_pred cc---C---CCCceEEeCCCceeecc
Confidence 22 1 24478877665555553
No 249
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.90 E-value=12 Score=44.10 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=47.5
Q ss_pred cCCcEEEEeEEeecce---ecCCCeEEEEEEc-CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 68 YIITNINIPAIPGPPA---IPGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r---~~gk~l~Fi~LrD-~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|+.|+|.|+|.... +.++++.-+.+.| +++.+.+++-+. .|-...++.|..+.|.|++....
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~---~~~~~~~~~g~~~~~~Gk~~~~~ 97 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNR---AFLKKKFKVGSKVVVYGKVKSSK 97 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECC---HHHHhhCCCCCEEEEEEEEEeeC
Confidence 4578899999987532 1223467788999 999999998752 23335689999999999998643
No 250
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=70.94 E-value=12 Score=33.18 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=43.2
Q ss_pred cEEEEeEEeec---cee-----cCCCeEEEEEEcC-CeEEEEEEecccchhhhhhcCCCccEEEEEE-EeEeC
Q psy8087 71 TNINIPAIPGP---PAI-----PGKGLMFVTLRDG-SGFIQCVLADILCQTEHALLLSTESSVQFRG-RIEKV 133 (658)
Q Consensus 71 ~~v~~~Grv~~---~r~-----~gk~l~Fi~LrD~-~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G-~l~~~ 133 (658)
..++|.|||.. +|. ..+.+.-++|.|. ++.|++.+-.+..+.|. ..|..|+++.+++ .|++.
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~-~~l~eG~vy~i~~~~V~~a 81 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFY-DLLEVGKVYYISKGSVKVA 81 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhh-cccccccEEEEeccEEeec
Confidence 35899999974 221 1134778899999 88999999876544332 3688999999876 44443
No 251
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.49 E-value=48 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=36.5
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~vls~~ 598 (658)
.+-|++-.... ......|+.|+.|.|+|.+....=. + .....++|.|++|..|...
T Consensus 52 ~~~v~~wg~~A-e~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 52 WHDIVIFGRLA-EVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred EEEEEEehHHH-HHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 46666654321 2344579999999999999865311 1 1123489999999887653
No 252
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=70.22 E-value=38 Score=29.97 Aligned_cols=63 Identities=22% Similarity=0.156 Sum_probs=45.9
Q ss_pred ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEe
Q psy8087 530 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVG 596 (658)
Q Consensus 530 kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls 596 (658)
+--=+.|.||...+|+++.......-.-..|+.|++|.+.-....+-. .+..-|.+.+++++.
T Consensus 38 ~RyR~~lSDG~~~~~amLatqln~lv~~g~l~~~siirl~~y~~n~v~----~~k~iiiil~leVv~ 100 (101)
T PF04057_consen 38 DRYRLVLSDGVHSIQAMLATQLNHLVESGELQKGSIIRLKQYTCNTVK----NGKKIIIILDLEVVQ 100 (101)
T ss_dssp -EEEEEEESSSEEEEEEESGGGHHHHHTTSSSTT-EEEEEEEEEEEST----TSSEEEEEEEEEEEE
T ss_pred ceEEEEEEChHHHHHHHhHHHhHHHHhcCCcccCCEEEEeEEEEeecc----CCCEEEEEEeeEEEe
Confidence 445588999999999999875443333457999999999998876552 155668888888875
No 253
>PLN02900 alanyl-tRNA synthetase
Probab=69.92 E-value=39 Score=41.65 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=27.9
Q ss_pred CccceecchhHHHHHHhcccCcchh-hHHHHHhhhhh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK-YQLIAKAQLKK 452 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv-i~f~~k~~lk~ 452 (658)
++---|+|+|||+++|-|..|.=|+ +..|.-..+++
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~ 275 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQE 275 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHH
Confidence 4567799999999999999999999 55554444443
No 254
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=69.63 E-value=12 Score=46.05 Aligned_cols=62 Identities=19% Similarity=0.013 Sum_probs=49.5
Q ss_pred CCcEEEEEEEEEeeec---CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 511 RDKRVTIFGWVHRLRR---QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~---~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
.++.|+|.|.|.++|. .|+.++|++|.|.++.+.|++..+. +.....+..++++.|+|...+
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~--~~~~~~l~~~~~~~~~~~~~~ 960 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDND--YLLFETLKKGDIYEFLISKSK 960 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHH--HHHHHHhhcCCEEEEEEEEcC
Confidence 4678999999998654 3668999999999999999998643 233335888999999998754
No 255
>COG3689 Predicted membrane protein [Function unknown]
Probab=69.32 E-value=19 Score=37.19 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=61.6
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc----hHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ----TEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~----~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
.+..|++|.+.|+|.+=-..+++- ++..| -|.+=|+++..... .+....++..+.|.|+|++....-...+..
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~N~-lflaR--FgiicC~ADa~vygl~v~~~~~~~y~ndtWltvkGtl~~e~~~~~~~~ 247 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPKNY-LFLAR--FGIICCAADAGVYGLLVELDNQTDYKNDTWLTVKGTLSSEYLSDFKKR 247 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCcce-eehhh--hheeeeeccceeEEEEEEccccccCCCCceEEEEeEEEeeecCchhhc
Confidence 566799999999999865555443 33444 56677777754221 223456899999999999977543223345
Q ss_pred ceEEEEEEEEEEecCC
Q psy8087 584 GHELKVDYWEVVGLAP 599 (658)
Q Consensus 584 ~~El~~~~i~vls~~~ 599 (658)
-..|+|++++++.+..
T Consensus 248 ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 248 IPVIEVDSVEVIPKPA 263 (271)
T ss_pred CcEEEeeeeeecCCCC
Confidence 6789999999887653
No 256
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=69.12 E-value=26 Score=29.72 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=40.4
Q ss_pred EEEeEEeecc----eecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCC-CccEEEEEEEeEe
Q psy8087 73 INIPAIPGPP----AIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEK 132 (658)
Q Consensus 73 v~~~Grv~~~----r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~-~es~V~v~G~l~~ 132 (658)
|+|.|.|-.. -+.|+.+.-+.|.|.++.|-|..-... .......|+ .|+.|.|.|.+..
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~-~~~~~~~ik~~G~~v~v~G~v~~ 65 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRK-DEKDKEELKSKGDWVRVRGKVQY 65 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccC-ChhHHhhcccCCCEEEEEEEEEE
Confidence 6788887764 235666666899999987666544321 111123688 9999999999974
No 257
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=68.78 E-value=60 Score=31.36 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=53.9
Q ss_pred cCCcEEEEEEEEE--eeecCCCc--eEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVH--RLRRQGKG--LMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~--~~R~~Gkk--l~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|.|.|. ++...+.. +.| +|.|+...+.|...+... ..++.|.-|.|+|.+.. .|
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~GilP-----DlFrEG~gVVveG~~~~-------~g-- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGILP-----DLFREGQGIVAQGVLEE-------GN-- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEcccCC-----ccccCCCeEEEEEEECC-------CC--
Confidence 4689999999998 77655443 465 889999999999886432 24788999999999932 11
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 120 ~F~A~--~vLAKhde 132 (160)
T PRK13165 120 HIEAK--EVLAKHDE 132 (160)
T ss_pred eEEEE--EEEecCCC
Confidence 23333 57889975
No 258
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=68.54 E-value=51 Score=31.97 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEe------C-------CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEec
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLRD------G-------SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 575 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lrd------~-------~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 575 (658)
+|.|.|+|.+ +|. .|..++-+.|-- . +..+-|++-.... ......|+.||.|.|+|.+...
T Consensus 7 kv~LiGrLg~DPelr~t~~G~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~A-e~v~~~L~KGs~V~VeGrL~~~ 85 (164)
T PRK08763 7 KVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLG-EIAGEYLRKGSQCYIEGSIRYD 85 (164)
T ss_pred EEEEEEEecCCCeEEEcCCCCeEEEEEEEeccceecCCCCeeccceEEEEEEehHHH-HHHHHhcCCCCEEEEEEEEEec
Confidence 5778888866 343 333343334321 1 1125666654321 1234569999999999999775
Q ss_pred CC-CCC--CCCceEEEEEEEEEEecC
Q psy8087 576 PE-GKS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 576 ~~-~~~--~~g~~El~~~~i~vls~~ 598 (658)
.- ++. +...+||.++++++|...
T Consensus 86 ~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 86 KFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred eeECCCCCEEEEEEEEEeEEEECCCC
Confidence 31 111 123589999999998754
No 259
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=68.21 E-value=22 Score=31.43 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=40.0
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCC-eEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~-~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+.|++.|+|.+.+ |. .+ .+.+.. +.++|.++... .+..+-.|.|.|++.+
T Consensus 13 f~gk~V~ivGkV~~~~--~~--~~-~~~~~Dg~~v~v~l~~~~-------~~~~~~~vEViG~V~~ 66 (101)
T cd04479 13 FVGKTVRIVGKVEKVD--GD--SL-TLISSDGVNVTVELNRPL-------DLPISGYVEVIGKVSP 66 (101)
T ss_pred hCCCEEEEEEEEEEec--CC--eE-EEEcCCCCEEEEEeCCCC-------CcccCCEEEEEEEECC
Confidence 5789999999999976 32 34 455544 48999987653 4667889999999985
No 260
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=68.01 E-value=45 Score=40.88 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=29.6
Q ss_pred CccceecchhHHHHHHhcccCcchh-hHHHHHhhhhhhh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK-YQLIAKAQLKKVS 454 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv-i~f~~k~~lk~~~ 454 (658)
+|---|+|+|||+++|-|.+|.=|+ +..|.-..+++..
T Consensus 219 ~~iDTG~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~ 257 (865)
T PRK00252 219 KNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELT 257 (865)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHh
Confidence 5677899999999999999999998 6655444444443
No 261
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=68.00 E-value=21 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=43.5
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecC
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~ 576 (658)
.+.|.|.+++..+. =+|+.|+|.+|.|++.+..+... +.-..|..|+++..+-.-.-++
T Consensus 6 ~l~v~Iks~~~~~~-D~~v~l~DpTG~i~~tiH~~v~~-~y~~~l~~GavLlLk~V~Vf~p 64 (86)
T PF15072_consen 6 CLVVIIKSIVPSSE-DAFVVLKDPTGEIRGTIHRKVLE-EYGDELSPGAVLLLKDVTVFSP 64 (86)
T ss_pred EEEEEEEEeeccCC-CeEEEEECCCCcEEEEEeHHHHh-hcCCccccCEEEEEeeeeEEec
Confidence 58999999998875 67999999999999999864211 2234578888777765443333
No 262
>KOG3108|consensus
Probab=66.82 E-value=40 Score=35.24 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=45.9
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-chHHhccCCCCcEEEEEEEEEe
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
..|.+-|||.++-.+. .=++++|-|+++.|=|..=.... .......|..|..|.|.|.++.
T Consensus 69 ~~v~~VGivr~~e~~~-t~i~y~I~D~tg~id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~ 130 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSA-TNITYEIEDGTGQIDVRQWFHDNAESEEMPALETGTYVKVYGHLKP 130 (265)
T ss_pred EEEEEEEEEEeceecC-cceEEEEecCcccEEEEEeccccchhhhCcccccCcEEEeeecccC
Confidence 4688999999998886 45668999999987666533221 1234457999999999999954
No 263
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=66.45 E-value=29 Score=38.49 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=53.7
Q ss_pred cEEEEEEEEEee--ecCCCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 513 KRVTIFGWVHRL--RRQGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 513 ~~V~v~GwI~~~--R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
..++|.|.|... ..-| +..|+.+.|+.|.|=|++...-..+ ..+..|.+||.|.+.|.++. +. |-+
T Consensus 267 ~~~~v~g~v~~~p~~ieG-ghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~--------~~--~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEG-GHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKP--------GT--LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeC-CEEEEEecCCCceEEEEEecccccchHHHHhcCCCCEEEEecCccc--------cc--eeE
Confidence 456788877654 4355 6899999999999999887544444 56778999999999999842 22 666
Q ss_pred EEEEEEe
Q psy8087 590 DYWEVVG 596 (658)
Q Consensus 590 ~~i~vls 596 (658)
++++++.
T Consensus 336 ek~~v~~ 342 (421)
T COG1571 336 EKFQVLK 342 (421)
T ss_pred EEEEEEE
Confidence 6666654
No 264
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=65.99 E-value=5.4 Score=44.12 Aligned_cols=47 Identities=17% Similarity=0.413 Sum_probs=33.3
Q ss_pred EEEEEeCCcce-eeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhc
Q psy8087 366 SVDVLFPNVGE-VIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLN 434 (658)
Q Consensus 366 ~fdL~~~G~~E-i~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g 434 (658)
-|+.+.+|.|. ||+|+. |+.+..+| | +-.|.-||++|+|||+.++.+
T Consensus 282 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 282 VFAAYIPGRGQALARGGR----YDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred EEEEEECCCCCcccCCCC----ccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 58999987765 777763 45555544 1 124888999999999987743
No 265
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=65.73 E-value=21 Score=40.05 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=65.2
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeE-eCCCCccceEecCCCcee
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE-KVPEENMKVQLIHPSSYA 149 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~-~~p~~~~d~~l~~p~~R~ 149 (658)
..|+|.|-|.+.+++.++=+|+.|.|....|.|++-+...... ...++.|+-|.|.|.+. -.|.|.+-+.++.
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~~l-~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~----- 91 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNNRL-KFRPQNGQQVLVRGGISVYEPRGDYQIICFE----- 91 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhhCC-CCCCCCCCEEEEEEEEEEECCCCcEEEEEEE-----
Confidence 3799999999998875556888999999999999876532111 12478999999999996 3455544444322
Q ss_pred EEeecCCccc-----CchHHHhhhCCcEEEc
Q psy8087 150 IVWLGDLKQG-----GYPPEVSLANGIAKVT 175 (658)
Q Consensus 150 l~lr~~~~~~-----~~iR~fl~~~gF~EV~ 175 (658)
+...-... ..+++=|...|++.-+
T Consensus 92 --i~~~G~G~l~~~~~~lk~~L~~eGlfd~~ 120 (432)
T TIGR00237 92 --MQPAGEGLLQLAYEQLKEKLAAEGLFDQE 120 (432)
T ss_pred --eccCChHHHHHHHHHHHHHHHHCCCCCch
Confidence 22110000 4677778888877543
No 266
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=65.45 E-value=46 Score=30.88 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=37.6
Q ss_pred CcEEEEEEEEEeeecC-CCceEEEEE-----Ee-----CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecC
Q psy8087 512 DKRVTIFGWVHRLRRQ-GKGLMFVTL-----RD-----GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~-Gkkl~Fi~L-----rd-----~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~ 576 (658)
++.+++.|.|...... +....|..- .. ..+.+++...++... .+..||.|.++|++...+
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~Gd~i~~~g~l~~~~ 145 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQP-----RLQPGDRIRVRGKLKPPS 145 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEecccccc-----ccCCCCEEEEEEEEecCC
Confidence 7888899998877443 323323221 11 123466666654321 589999999999997644
No 267
>PRK07080 hypothetical protein; Validated
Probab=65.26 E-value=9.4 Score=40.68 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=37.9
Q ss_pred CcEEEE-eeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCI-AQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 218 ~rvfeI-~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
+++|.+ |.|||+|++...+-+-||+|-|+-.- .+-+++++.-+..+....
T Consensus 152 g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 152 GRLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERGT 202 (317)
T ss_pred CcEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHHH
Confidence 377775 88999999877666779999998665 477788777776665543
No 268
>PRK15491 replication factor A; Provisional
Probab=64.75 E-value=19 Score=39.66 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=46.2
Q ss_pred cEEEEeEEeecc-------eecC--CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 71 TNINIPAIPGPP-------AIPG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 71 ~~v~~~Grv~~~-------r~~g--k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+|.|||.++ |+.| +.+.=+.|-|.+|.|++++=.+....+....|..|+++.+.|.++.
T Consensus 68 ~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~~~~~ 138 (374)
T PRK15491 68 SNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISGYAKE 138 (374)
T ss_pred CceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEeeeecc
Confidence 569999999976 4445 3466689999999999998775433332235889999999987543
No 269
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=64.38 E-value=54 Score=27.53 Aligned_cols=67 Identities=22% Similarity=0.193 Sum_probs=38.3
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCE--------EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSG--------FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~--------~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
+|.|.|......+..-.|+ |+|... -|=+...+ ...+..||.|.|+|++..-. |..+|
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-------~~~~~~Gd~V~vtG~v~ey~------g~tql 66 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-------GADVAVGDLVRVTGTVTEYY------GLTQL 66 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-------CCCCCCCCEEEEEEEEEeeC------CeEEE
Confidence 3678888887643123465 666521 12222111 34689999999999996532 44555
Q ss_pred EEEE-EEEEe
Q psy8087 588 KVDY-WEVVG 596 (658)
Q Consensus 588 ~~~~-i~vls 596 (658)
.... +++++
T Consensus 67 ~~~~~~~~~~ 76 (78)
T cd04486 67 TAVSAIEVLG 76 (78)
T ss_pred ccCCceEEec
Confidence 5533 44443
No 270
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=63.63 E-value=75 Score=32.31 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=56.7
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEEeC-----CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-CC-
Q psy8087 513 KRVTIFGWVHR---LRR--QGKGLMFVTLRDG-----SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-KS- 580 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~--~Gkkl~Fi~Lrd~-----~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~~- 580 (658)
..|.+.|+|.+ +|. .|+.++-+.|--. +..+.|++-..... .+..|+.||-|.|+|.++...-. +.
T Consensus 110 N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~Ae--~~~~l~KG~~V~V~GrL~sr~y~~k~g 187 (219)
T PRK05813 110 NEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRNAR--FCKTLEVGDNIRVWGRVQSREYQKKLS 187 (219)
T ss_pred cEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHHhH--HHhhCCCCCEEEEEEEEEecceEcCCC
Confidence 46889999976 344 4555666666422 34688888764332 24469999999999999876311 11
Q ss_pred -----CCCceEEEEEEEEEEecC
Q psy8087 581 -----APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 581 -----~~g~~El~~~~i~vls~~ 598 (658)
+...+||.+++++.|++.
T Consensus 188 ~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 188 EGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred CccceEEEEEEEEEEEEEEcCCh
Confidence 122489999999998764
No 271
>PRK00036 primosomal replication protein N; Reviewed
Probab=63.01 E-value=20 Score=32.23 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=39.5
Q ss_pred CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 540 SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 540 ~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
...||+++.+.. ......++.|+.|.|+|.+.++. .....+=++++.|+.+.+.
T Consensus 46 ~~~i~ava~G~~--a~~~~~l~~Gs~v~v~GFLa~~~---~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 46 ELTISAVALGDL--ALLLADTPLGTEMQVQGFLAPAR---KDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEEEhhH--HHHhcccCCCCEEEEEEEEEECC---CCCCcEEEEhHHeEEcccc
Confidence 345888888732 24455799999999999998732 2246789999999887543
No 272
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=62.15 E-value=77 Score=30.26 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=49.9
Q ss_pred cEEEEEEEEEe---eecC--CCceEEEEEE------e---C-----CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 513 KRVTIFGWVHR---LRRQ--GKGLMFVTLR------D---G-----SGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~~--Gkkl~Fi~Lr------d---~-----~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
..|.|.|||.+ +|.. |+.++-+.|- + + +.-+.|++-...........|+.||.|.|+|.+.
T Consensus 6 N~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~ 85 (152)
T PRK06642 6 NKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQ 85 (152)
T ss_pred eEEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHHHHHHHHhCCCCCEEEEEEEEE
Confidence 45788888876 5543 3334444442 1 1 2237777655311112345699999999999998
Q ss_pred ecCC-CC--CCCCceEEEEEEE----EEEecC
Q psy8087 574 KVPE-GK--SAPGGHELKVDYW----EVVGLA 598 (658)
Q Consensus 574 ~~~~-~~--~~~g~~El~~~~i----~vls~~ 598 (658)
...- .+ ......||.++.+ ..|...
T Consensus 86 ~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 86 TRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred eCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 6531 11 1123478888876 566643
No 273
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=61.95 E-value=27 Score=39.12 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=68.1
Q ss_pred CcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe-CCCCccceEecCCCce
Q psy8087 70 ITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK-VPEENMKVQLIHPSSY 148 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~-~p~~~~d~~l~~p~~R 148 (658)
-..|+|.|-|.+.+++.++=+|+.|.|....|-|++-+...... ...++.|.-|.|.|.+.- .|.|.+-+.++.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~-~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~---- 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSARRL-KFKPEEGMKVLVRGKVSLYEPRGDYQLIVEE---- 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhhcC-CCCCCCCCEEEEEEEEEEECCCCCEEEEEEE----
Confidence 46799999999998875556888999999999999877532111 124789999999999984 456654444432
Q ss_pred eEEeecC--Cccc-CchHHHhhhCCcEEEc
Q psy8087 149 AIVWLGD--LKQG-GYPPEVSLANGIAKVT 175 (658)
Q Consensus 149 ~l~lr~~--~~~~-~~iR~fl~~~gF~EV~ 175 (658)
++.-.- ...+ ..+++-|.+.|++.-+
T Consensus 98 -i~~~g~G~l~~~~~~lk~~L~~eGlfd~~ 126 (438)
T PRK00286 98 -IEPAGIGALAAAFEQLKEKLAAEGLFDPE 126 (438)
T ss_pred -eeeCCccHHHHHHHHHHHHHHHCCCCChh
Confidence 221100 0001 4778888899988654
No 274
>KOG2509|consensus
Probab=61.86 E-value=9.1 Score=42.26 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=56.7
Q ss_pred chHHHhhhCCcEEEcCCccccccC-CC-C-ccce-----eeccCCcceeeccCHHHHHHHhccc-------C-CcEEEEe
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQV-EG-G-STLF-----SLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCIA 224 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~-eG-~-~~~F-----~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI~ 224 (658)
+--+|+.++||+-+.||-|..... +. | -.-| .+-.-+.+.||.=..|.-+-.+-.+ + -|+--.+
T Consensus 194 yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S 273 (455)
T KOG2509|consen 194 YALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVS 273 (455)
T ss_pred HHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccccccCceeeeehh
Confidence 456789999999999999864421 11 1 0112 1111122445554444433322211 1 2455679
Q ss_pred eeeecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 225 ~~FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
+|||.|-..+ +-| +|+-+|.-. +.+-++--.+.|+|+..
T Consensus 274 ~CfR~EaGs~G~d~~GlyRVH--qF~KVE~Fv-it~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 274 RCFRAEAGSHGKDTKGLYRVH--QFEKVEQFV-ITGPEDSWEMLEEMINN 320 (455)
T ss_pred HHHHHHhhhcccccccceeee--eeeeeEEEE-ecCcchhHHHHHHHHHH
Confidence 9999995211 125 899998743 34555555566666654
No 275
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=61.74 E-value=17 Score=31.11 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=35.8
Q ss_pred CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCC---CCCceEEEEEEEEEE
Q psy8087 540 SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKS---APGGHELKVDYWEVV 595 (658)
Q Consensus 540 ~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~---~~g~~El~~~~i~vl 595 (658)
...++|.+-.+.. ...++.++.||.|.|+|.+....-... ....+++.++++.++
T Consensus 43 ~~~~~v~~~g~~a-~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 43 TDWIRVVAFGKLA-ENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred cEEEEEEEEhHHH-HHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 3347777765422 234567999999999999977542111 123478888887653
No 276
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=61.57 E-value=10 Score=40.55 Aligned_cols=46 Identities=33% Similarity=0.572 Sum_probs=33.5
Q ss_pred EEEEEeCCcce-eeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 366 SVDVLFPNVGE-VIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 366 ~fdL~~~G~~E-i~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
-|+++..|.++ |++|+. |+.+.++| |. -.|..||++|+|||+.++.
T Consensus 267 vFe~~~~~~~~~i~~GGR----YD~L~~~f---g~---------------~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 267 IFEGYAPGLGAPIAGGGR----YDNLLGRF---GR---------------PLPATGFALNLERLLEALT 313 (314)
T ss_pred EEEEEECCCCCcccCCcc----HHHHHHHc---CC---------------CCCCceEEecHHHHHHHhc
Confidence 48888887655 777763 66666666 21 1378999999999998764
No 277
>PRK07211 replication factor A; Reviewed
Probab=61.34 E-value=48 Score=37.68 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=57.5
Q ss_pred ecccCCccCCcEEEEEEEEEeeec-----------CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLRR-----------QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGR 571 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R~-----------~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~ 571 (658)
+|.++.. ....|+|.|||.++-. .| +++=++|-|.+|.|.+++=.+... .....|..|+++.|.|.
T Consensus 55 ~I~dL~p-g~~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d~ad-~~~~~Le~GdV~~I~~~ 131 (485)
T PRK07211 55 GIADIEP-GMDEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDEQAV-AAEEELEVGQVLRIKGR 131 (485)
T ss_pred cHhhCCC-CCCceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEechHhH-hhhcccCCCCEEEEece
Confidence 5665542 2366999999977633 23 688899999999999998754321 23457999999999997
Q ss_pred EEecCCCCCCCCceEEEEEEEE
Q psy8087 572 IEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 572 v~~~~~~~~~~g~~El~~~~i~ 593 (658)
++.. -+.+||.+..++
T Consensus 132 ~~~~------ys~~El~i~~ve 147 (485)
T PRK07211 132 PKDG------YNGLEVSVDKVE 147 (485)
T ss_pred Eecc------ccceEEEEeeEE
Confidence 7421 244688887654
No 278
>PRK04036 DNA polymerase II small subunit; Validated
Probab=60.91 E-value=50 Score=37.88 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRI 572 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v 572 (658)
.++++.|-|-|..+|...++-..+.|-|.+|.++++..++.... .....|-.|.+|.|.|+.
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~ 214 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTL 214 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEE
Confidence 45779999999999864433335799999999999986542111 223468899999999987
No 279
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=60.32 E-value=66 Score=33.00 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred hhCCcEEEcCCccccccCCC------Cc-cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEeeeee-cC
Q psy8087 167 LANGIAKVTPPTLVQTQVEG------GS-TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIAQSYR-AE 230 (658)
Q Consensus 167 ~~~gF~EV~TPiL~~~~~eG------~~-~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~~~FR-~E 230 (658)
.+.+.+.|..|+++.... | |. +| |.+..+ +..+-.-+|---|+.+++. +| +.+|.=..+.| .|
T Consensus 23 ~~LnL~rVsAPLfv~~~s-GlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~d 101 (244)
T PF03590_consen 23 KALNLTRVSAPLFVEKGS-GLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDD 101 (244)
T ss_dssp HHC-EEE----SEEETTS-S-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-
T ss_pred HHhCceEecCCeEEecCC-CCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCCCceEeecCceeecch
Confidence 457999999999975532 2 21 23 555444 6778888999999998886 65 67999999999 77
Q ss_pred CCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy8087 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH 275 (658)
Q Consensus 231 ~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~ 275 (658)
+.-++.|.-=.-|-|||+....-+.-++.+.+.++.|+..+....
T Consensus 102 e~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~tE 146 (244)
T PF03590_consen 102 EELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKETE 146 (244)
T ss_dssp SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 643569999999999999987666667777778888777776554
No 280
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=60.22 E-value=68 Score=31.64 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=37.9
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~vls~~ 598 (658)
.+.|++-.... ......|+.||.|.|+|.+....-. + .+...+||.|+.|++|...
T Consensus 53 w~~V~~fGk~A-E~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 53 WHRVAFFGRLA-EIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEEehHHH-HHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 46666654321 1244569999999999999875311 1 1224589999999999754
No 281
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=57.86 E-value=13 Score=41.77 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.5
Q ss_pred CccceecchhHHHHHHhc
Q psy8087 417 PHGGYGLGLERVLCWLLN 434 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g 434 (658)
|.-||++|+|||+++|..
T Consensus 300 PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 300 PAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CeeEEEecHHHHHHHHhc
Confidence 667999999999998854
No 282
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=57.82 E-value=1.2e+02 Score=28.09 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=36.0
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCC--CCceEEEEEEEEEEecC
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA--PGGHELKVDYWEVVGLA 598 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~--~g~~El~~~~i~vls~~ 598 (658)
+-|++-.... ......|+.||.|.|+|.+....-.+.. ...+||.++++++|...
T Consensus 49 ~~v~~fg~~A-e~v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~k 105 (131)
T PRK07274 49 INVVLWGKLA-ETLASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLESR 105 (131)
T ss_pred EEEEEehHHH-HHHHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcCC
Confidence 5555543221 1234569999999999999876531111 12479999999988643
No 283
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=57.76 E-value=24 Score=43.60 Aligned_cols=62 Identities=18% Similarity=-0.039 Sum_probs=48.5
Q ss_pred CcEEEEeEEeeccee---cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 70 ITNINIPAIPGPPAI---PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~---~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
++.|+|.|.|.++|. .|+.++|+.|.|.+|.+.+++..+....+. .+..++.+.|+|+....
T Consensus 897 ~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~~~~~~--~l~~~~~~~~~~~~~~~ 961 (973)
T PRK07135 897 NTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDNDYLLFE--TLKKGDIYEFLISKSKN 961 (973)
T ss_pred CCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHHHHHHH--HhhcCCEEEEEEEEcCC
Confidence 467899999887553 477899999999999999999876443332 37778889999988754
No 284
>PRK12366 replication factor A; Reviewed
Probab=55.65 E-value=51 Score=38.99 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=60.0
Q ss_pred cceeecccCCccCCcEEEEEEEEEee---e----cCC--CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 499 AVRIKIKDGEKYRDKRVTIFGWVHRL---R----RQG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 499 ~~~~~i~~~~~~~g~~V~v~GwI~~~---R----~~G--kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
....+|+++.. ....|+|.|+|.++ | ..| .++.=++|-|.+|.|.+++=.+.. +....|..|+++.|.
T Consensus 61 ~~~~~I~dl~p-~~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~~--~~~~~le~G~v~~i~ 137 (637)
T PRK12366 61 EEDFKISDIEE-GQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDNA--KLLKGLKEGDVIKIE 137 (637)
T ss_pred cceeEHHHCcC-CCcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchhh--hhhccCCCCCEEEEe
Confidence 34566777653 23569999999765 3 222 257888999999999999876433 234679999999999
Q ss_pred EEEEecCCCCCCCCceEEEEEEE
Q psy8087 570 GRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 570 G~v~~~~~~~~~~g~~El~~~~i 592 (658)
|-..+. -.+.+||.+..-
T Consensus 138 ~~~v~~-----~~~~~el~~~~~ 155 (637)
T PRK12366 138 NARSRK-----WNNDVELNSGSE 155 (637)
T ss_pred ccEecc-----cCCceEEEcCCc
Confidence 865442 246788876443
No 285
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=55.34 E-value=1.5e+02 Score=28.52 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=53.6
Q ss_pred ccCCcEEEEEEEEE--eeecCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 509 KYRDKRVTIFGWVH--RLRRQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~R~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
...++.+++.|.|. ++...+. .+.| .+.|+...+.|..++... ..++.|.-|.++|.+. .|
T Consensus 48 ~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilP-----DlFrEGqgVVaeG~~~--------~g- 112 (155)
T PRK13159 48 AAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGILP-----DLFRDNQSVIANGRMQ--------GG- 112 (155)
T ss_pred cccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccCCC-----ccccCCCeEEEEEEEc--------CC-
Confidence 34579999999998 7765544 3566 778999999999887432 2478999999999983 12
Q ss_pred eEEEEEEEEEEecCCC
Q psy8087 585 HELKVDYWEVVGLAPA 600 (658)
Q Consensus 585 ~El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 113 -~F~A~--~vLAKHde 125 (155)
T PRK13159 113 -RFVAN--EVLAKHDE 125 (155)
T ss_pred -EEEEe--EEEecCCC
Confidence 24443 56889865
No 286
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=54.77 E-value=75 Score=30.69 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=46.2
Q ss_pred cCCcEEEEeEEee--cceecCCC--eEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPG--PPAIPGKG--LMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~--~~r~~gk~--l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.++|.|.|. ++.+.+.+ +.| .|.|+...|.|....-... .++.|.-|.|+|.+..
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~GilPD-----lFrEG~gVVveG~~~~ 117 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGILPD-----LFREGQGIVAQGVLEE 117 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEcccCCc-----cccCCCeEEEEEEECC
Confidence 4678999999998 78887664 577 8899999999988754322 3678999999999963
No 287
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=54.53 E-value=15 Score=40.54 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=35.5
Q ss_pred eEEEEEeCCc---ceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcc
Q psy8087 365 ESVDVLFPNV---GEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 365 ~~fdL~~~G~---~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~ 435 (658)
--|+.+..+. +-||+|+ +|+.+..+|.. ...|..||++|+|||+.++...
T Consensus 261 ~vFe~~~~~~~~~~~i~~GG----RYD~L~~~f~~-----------------~~~~avGfs~~~~~l~~~l~~~ 313 (397)
T TIGR00442 261 TVFEFVTDELGAQGTICGGG----RYDGLVEELGG-----------------PPTPAVGFAIGIERLLLLLEEL 313 (397)
T ss_pred eEEEEEECCCCccceeeecc----chHHHHHHhCC-----------------CCCceEEeeecHHHHHHHHHhc
Confidence 3588888753 3588887 56666665521 1247889999999999998753
No 288
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=53.66 E-value=5.8 Score=44.84 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=33.3
Q ss_pred CcceeeccCHHHH------HHHhccc-CC----cEEEEeeeeecCCCCCccC----cceeeeeeeEee
Q psy8087 197 GEPAYLTQSSQLY------LETCLPA-LG----DVYCIAQSYRAENSRTRRH----LAEYTHVEAECA 249 (658)
Q Consensus 197 ~~~~~L~~Spqly------lk~li~g-~~----rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a 249 (658)
|...||| ||-. -|+|+-. -. -|-|||++||||=+ .|. +-||||.|+|.=
T Consensus 158 ~~~~YLR--PETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEIS--Pr~gl~R~REF~QaEiE~F 221 (558)
T COG0423 158 DSLGYLR--PETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEIS--PRNGLFRTREFEQAEIEFF 221 (558)
T ss_pred Ccceeec--ccccchhhhhhHHHHHHhccCCCeEEEeechhhccccC--cccceeehhhhhhhheeeE
Confidence 5678998 4422 3344432 22 38999999999954 243 579999999874
No 289
>PRK07217 replication factor A; Reviewed
Probab=53.22 E-value=3e+02 Score=29.53 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred eeecccCCccCCcEEEEEEEEEee--ecCCCceEE-EEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRL--RRQGKGLMF-VTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~--R~~Gkkl~F-i~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
-.+|.++. ..++.|+|.|+|..+ +.++ .+.. -.|-|.+|+|-.++=.+.. ...|..|++|.+.+-...--
T Consensus 72 ~~kI~Di~-~~~~~VsV~aKVl~l~e~~~~-si~qvGllgDETG~IkfT~W~~s~----~~~leeGd~~rI~na~v~ey- 144 (311)
T PRK07217 72 LVNIADID-EPEQWVDVTAKVVQLWEPSSD-SIAQVGLLGDETGTIKFTKWAKSD----LPELEEGKSYLLKNVVTDEY- 144 (311)
T ss_pred ceeeeecC-CCCCcEEEEEEEEEecCCCCC-ceEEEEEEEcCCceEEEEEccCCC----CCcccCCCEEEEEeEEEeeE-
Confidence 34566543 246789999999987 4444 4666 5788999998887754321 23589999999998876644
Q ss_pred CCCCCCceEEEEEEEEEE
Q psy8087 578 GKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~vl 595 (658)
.|.++|.+.....+
T Consensus 145 ----~G~~~lnlg~~t~I 158 (311)
T PRK07217 145 ----QGRFSVKLNRTTSI 158 (311)
T ss_pred ----CCEEEEEeCCceEE
Confidence 34455555444333
No 290
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=53.13 E-value=1.5e+02 Score=28.72 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=33.3
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEE----EEEecC
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYW----EVVGLA 598 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i----~vls~~ 598 (658)
+.|++-...........|+.|+.|.|+|.+....= .+ .....+||.++.+ +.|.+.
T Consensus 55 ~~Vv~fg~~~Ae~~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 55 HRVVIFNEGLCKVAEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred EEEEEeChHHHHHHHHhcCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 56665442111123356999999999999976431 11 1123478888764 666543
No 291
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=52.98 E-value=1.2e+02 Score=29.64 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=51.2
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEEeC--------------CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 513 KRVTIFGWVHR---LRR--QGKGLMFVTLRDG--------------SGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~--~Gkkl~Fi~Lrd~--------------~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
..|.|.|||.+ +|. .|..++-+.|--. +..+-|++-.... ......|+.||.|.|+|.+.
T Consensus 7 N~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~A-e~v~~~L~KG~~V~VeGrL~ 85 (175)
T PRK13732 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLA-EVAGEYLRKGAQVYIEGQLR 85 (175)
T ss_pred eEEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHH-HHHHHhcCCCCEEEEEEEEE
Confidence 35788888876 343 3433444444211 1125566554321 12345699999999999998
Q ss_pred ecCCCC-C-CCCceEEEEE---EEEEEecCC
Q psy8087 574 KVPEGK-S-APGGHELKVD---YWEVVGLAP 599 (658)
Q Consensus 574 ~~~~~~-~-~~g~~El~~~---~i~vls~~~ 599 (658)
...-.+ . .....||.|+ ++++|++..
T Consensus 86 ~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 86 TRSWEDNGITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred eeeEccCCeEEEEEEEEEeecCeEEEecCCC
Confidence 653211 1 1134789998 899988753
No 292
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=52.72 E-value=1.3e+02 Score=35.58 Aligned_cols=80 Identities=24% Similarity=0.247 Sum_probs=57.2
Q ss_pred ccCCcEEEEEEEEEee--e-cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRL--R-RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~--R-~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
...|..|++.|.|.+. + ..++++.=+.+.|+++.+-+++-.... ...+.++.|..|.|+|++... .+.+
T Consensus 57 ~~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~~--~l~~~~~~G~~v~v~Gk~~~~------~~~~ 128 (677)
T COG1200 57 ARPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFPA--YLKKKLKVGERVIVYGKVKRF------KGGL 128 (677)
T ss_pred cCCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECccH--HHHhhCCCCCEEEEEEEEeec------cCce
Confidence 3468999999999665 3 335566668899999988888764321 334579999999999999653 3556
Q ss_pred EEEEEEEEEEe
Q psy8087 586 ELKVDYWEVVG 596 (658)
Q Consensus 586 El~~~~i~vls 596 (658)
++.--++.+.+
T Consensus 129 ~~~hpe~~~~~ 139 (677)
T COG1200 129 QITHPEYIVND 139 (677)
T ss_pred EEEcceEEecC
Confidence 66555555544
No 293
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=51.89 E-value=1.4e+02 Score=28.44 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=47.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCce-EEEEEEeCCEE-----------EEEEEcCCccchHHhccCCCCcEEEEEEEEEec
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGL-MFVTLRDGSGF-----------IQCVLADILCQTEHALLLSTESSVQFRGRIEKV 575 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl-~Fi~Lrd~~~~-----------iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 575 (658)
....|++|+|.|+|.-+-..+.++ -|+.+.+-+.- |.|...+. ...-..-+.|.|+|++...
T Consensus 51 ~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~------~~~~~~~~pv~V~G~l~~~ 124 (146)
T PF11736_consen 51 KALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKP------IPVDSLYDPVWVEGTLKVE 124 (146)
T ss_pred HHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCC------ccccccceeEEEEEEEEec
Confidence 456799999999999998654344 56666653321 22222211 1111245899999999775
Q ss_pred CCC-CCCCCceEEEEEEEE
Q psy8087 576 PEG-KSAPGGHELKVDYWE 593 (658)
Q Consensus 576 ~~~-~~~~g~~El~~~~i~ 593 (658)
... ......+.+.+.+++
T Consensus 125 ~~~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 125 RSSSDLGTSGYSMDADSVE 143 (146)
T ss_pred cccchheeEEEEEEeeEEE
Confidence 421 112234666666665
No 294
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=51.74 E-value=1.2e+02 Score=30.76 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCcEEEEEEEEEe---eecCCCceEEEEE-------EeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC--C
Q psy8087 511 RDKRVTIFGWVHR---LRRQGKGLMFVTL-------RDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--G 578 (658)
Q Consensus 511 ~g~~V~v~GwI~~---~R~~Gkkl~Fi~L-------rd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~ 578 (658)
.+.+|.|.|+|.+ .|-...+-.|+.+ .+....|.|++...... ...+..|+.|.|+|.+..=.. +
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rlae---~~~l~kG~~v~VeGqlrsy~~~~~ 83 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERLLA---GMDLKVGTLVIVEGQLRSYNKFID 83 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhhhh---hhcccCCCEEEEEEEEEEeccCCC
Confidence 3567889999865 2332223445443 24555688888764321 223999999999999983211 1
Q ss_pred CCCCCceEEEEEEEEEEecC
Q psy8087 579 KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 579 ~~~~g~~El~~~~i~vls~~ 598 (658)
..+.--+|+.+.+++.|.+.
T Consensus 84 G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 84 GKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CcEEEEEEEEEEEEEEccCC
Confidence 11123489999999998875
No 295
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.22 E-value=10 Score=42.43 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=34.3
Q ss_pred EEEEEeCCc---ceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhccc
Q psy8087 366 SVDVLFPNV---GEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436 (658)
Q Consensus 366 ~fdL~~~G~---~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~ 436 (658)
-||.+..+. |=||+|+. |+-|.+.|- | ---|.-|||||+|||+++|-...
T Consensus 275 VFE~~~~~~~~~~sI~gGGR----YD~Lv~~~g--G---------------~~~pavGFaiGveRl~~~l~~~~ 327 (429)
T COG0124 275 VFEAVTDGLGAQGSVCGGGR----YDGLVEEFG--G---------------KPTPAVGFAIGVERLILALEEEG 327 (429)
T ss_pred EEEEEEcCCccccceecCcc----chHHHHHhC--C---------------CCCCceeEehHHHHHHHHHHHcC
Confidence 488888854 35777753 555555553 1 12477899999999999988663
No 296
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=50.70 E-value=41 Score=39.46 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=49.8
Q ss_pred cCCcEEEEeEEeecceec---CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 68 YIITNINIPAIPGPPAIP---GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~---gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
..|+.|++.|.|.+.-.. ++++.=+.+.|+++.+-+++-... .|-...++.|..|.|+|++.....
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~--~~l~~~~~~G~~v~v~Gk~~~~~~ 126 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFP--AYLKKKLKVGERVIVYGKVKRFKG 126 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECcc--HHHHhhCCCCCEEEEEEEEeeccC
Confidence 467889999999664333 556667789999999988876543 133457899999999999987443
No 297
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=50.66 E-value=80 Score=37.23 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=46.5
Q ss_pred cCCcEEEEEEEEEeeec---CCCceEEEEEEe-CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 510 YRDKRVTIFGWVHRLRR---QGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~---~Gkkl~Fi~Lrd-~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
..|+.|+|.|.|.+... .++++.-+.+.| +++.+.+++-... ...+.++.|+.+.|.|++..
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~~---~~~~~~~~g~~~~~~Gk~~~ 95 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNRA---FLKKKFKVGSKVVVYGKVKS 95 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECCH---HHHhhCCCCCEEEEEEEEEe
Confidence 45899999999875421 123466788999 9999999987521 23457999999999999965
No 298
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=50.48 E-value=9.3 Score=43.36 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=33.0
Q ss_pred cceeecc--CHHHH--HHHhcc-cCC----cEEEEeeeeecCCCCCccC----cceeeeeeeEeecCCH
Q psy8087 198 EPAYLTQ--SSQLY--LETCLP-ALG----DVYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTF 253 (658)
Q Consensus 198 ~~~~L~~--Spqly--lk~li~-g~~----rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~ 253 (658)
...|||- |--.| -+.++. .-. -+-|||++||||=+ . |. .-||+|+|+|. |.+-
T Consensus 137 ~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIs-P-r~~l~R~REF~q~EiE~-Fv~P 202 (539)
T PRK14894 137 SFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEIN-P-RNFLFRVREFEQMEIEY-FVMP 202 (539)
T ss_pred cceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccC-C-CCceeecccchhheEEE-EeCC
Confidence 4689982 22222 234443 212 38999999999943 2 32 46999999987 4443
No 299
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=50.33 E-value=87 Score=28.94 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=40.2
Q ss_pred CcEEEEeEEeecceecCCC-eEEEE-E----Ec-----CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 70 ITNINIPAIPGPPAIPGKG-LMFVT-L----RD-----GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~~gk~-l~Fi~-L----rD-----~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
++++++.|.|.......+. ..|.. + .. .+++++++..++... .+..|+.|.++|++++.+.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~Gd~i~~~g~l~~~~~ 146 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQP-----RLQPGDRIRVRGKLKPPSG 146 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEecccccc-----ccCCCCEEEEEEEEecCCC
Confidence 6789999999886554433 22322 1 11 124577777665321 4889999999999998654
No 300
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=49.93 E-value=15 Score=37.52 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=44.0
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
.+...||+-++|| ||. |-.-|.+.|.-+ --|-+|-+--|+|||.|.+-|.+||-|+
T Consensus 126 awGlGWEVWldGM-EvT-----------QFTYFQQvGGie------------c~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 126 AWGLGWEVWLDGM-EVT-----------QFTYFQQVGGLE------------CKPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ccccceeEEEcCe-eee-----------eeehhhhhCCee------------ccceeeeeehhHHHHHHHHhCccceeEE
Confidence 4567899999999 874 445565554211 1355677888999999999999999998
Q ss_pred hHH
Q psy8087 442 YQL 444 (658)
Q Consensus 442 i~f 444 (658)
..=
T Consensus 182 ~W~ 184 (298)
T COG0752 182 EWN 184 (298)
T ss_pred eec
Confidence 654
No 301
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=49.60 E-value=82 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=45.8
Q ss_pred cCCcEEEEeEEee--cceecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPG--PPAIPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~--~~r~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.++|.|-|. ++.+.+. .+.| +|.|+...|.|....-... .++.|.-|.|+|.+..
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPD-----lFrEG~gVVveG~~~~ 117 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGILPD-----LFREGQGVVVQGTLEK 117 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEeccCCc-----cccCCCeEEEEEEECC
Confidence 3578899999998 7887654 3677 8999999999988754322 3678999999999964
No 302
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=48.47 E-value=1.2e+02 Score=38.65 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEcCCc-cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 511 RDKRVTIFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVLADIL-CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R----~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
....|+|.|.|-.+- ..|+.+.-+.+.|.+..|-|..-... ...+....|+.|+.|.|+|.+.... -.+++
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~----~~~~~ 81 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSEEDPEKFDGIKIGKWVRARGKIELDN----FSRDL 81 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccccchHHHhhcCCCcEEEEEEEEeccC----CCCce
Confidence 356799999997652 25666666889999888777665422 2234456799999999999996533 24678
Q ss_pred EEEEEEEEEE
Q psy8087 586 ELKVDYWEVV 595 (658)
Q Consensus 586 El~~~~i~vl 595 (658)
.+.+..++.+
T Consensus 82 ~~~~~~~~~~ 91 (1213)
T TIGR01405 82 QMIIKDIEEI 91 (1213)
T ss_pred EEEeeeeeec
Confidence 8888888754
No 303
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.39 E-value=27 Score=43.54 Aligned_cols=37 Identities=30% Similarity=0.621 Sum_probs=30.9
Q ss_pred CCcEEEEEEEEEeeecC-----CCceEEEEEEeCCEEEEEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQ-----GKGLMFVTLRDGSGFIQCVL 547 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~-----Gkkl~Fi~Lrd~~~~iQvv~ 547 (658)
.|.+|++.|.|.++|.. |+.++|++|.|.+|.+.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 46789999999876542 44699999999999999986
No 304
>PRK14699 replication factor A; Provisional
Probab=48.08 E-value=1e+02 Score=35.26 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=59.3
Q ss_pred CCcEEEEEEEEEeee-------cCC--CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 511 RDKRVTIFGWVHRLR-------RQG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R-------~~G--kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
.+..|+|.|+|.++- ..| .++.=+.|-|++|.|.+++=.+.+ .....+..|+.|.|.+--.+.. .-
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~a--~~~~~i~~Gd~v~i~~~y~~~~---~~ 359 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKT--NFLDEIDFDETVEVLNAYSREN---TF 359 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCccc--ccccccCCCceEEEEeEEEEec---cC
Confidence 357799999998652 233 256668999999999999865433 2345688999999886543321 22
Q ss_pred CCceEEEEEEEEEEecCC
Q psy8087 582 PGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~ 599 (658)
.+.+||.+..-.++.+|.
T Consensus 360 ~~~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 360 SQQVELNLGARGIIQKSE 377 (484)
T ss_pred CccEEEEecCceeEeecC
Confidence 468999998888887774
No 305
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=48.00 E-value=2.4e+02 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=36.3
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEEEEEec
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i~vls~ 597 (658)
.+.|++-.... ......|+.||.|.|+|.+....= .+ .....++|.+++|.+|..
T Consensus 55 w~~V~~wg~~A-e~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 55 WAPVELWHRDA-EHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEEhHHH-HHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCC
Confidence 46677655321 123456999999999999987531 11 112358999999988754
No 306
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=45.01 E-value=88 Score=26.03 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEE-EEeEe
Q psy8087 88 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEK 132 (658)
Q Consensus 88 ~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~-G~l~~ 132 (658)
.+.=+.|.|.+|.|.+.+=.... ...+..|++|.++ |.++.
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~~----~~~~~~G~vv~i~~~~v~~ 64 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEKA----ADDLEPGDVVRIENAYVRE 64 (82)
T ss_pred EEEEEEEECCCCEEEEEEECchh----cccCCCCCEEEEEeEEEEe
Confidence 46777899999999988765431 2358999999999 66654
No 307
>KOG1035|consensus
Probab=44.68 E-value=36 Score=42.53 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred chHHHhhhCCcEEEcCCccccc-cCCCC-cccee-eccCCc----ceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCC
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQT-QVEGG-STLFS-LNFFGE----PAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSR 233 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~-~~eG~-~~~F~-~~~~~~----~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~ 233 (658)
.+-+-|..+|++|++||-+... .|--+ +++.+ .+.-|. ++=||+----|.-+=-+-.-|-|+|+++||-+.
T Consensus 941 ~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry~i~rVyr~~~-- 1018 (1351)
T KOG1035|consen 941 EVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSVLSFKRYCISRVYRPAI-- 1018 (1351)
T ss_pred HHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchHHHHHHhhhheeecccc--
Confidence 3345688999999999866422 11111 12221 122233 333443222222221122456799999999987
Q ss_pred CccCcceeeeeeeEeecCC----HHHHHHHHHHHHHH
Q psy8087 234 TRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICD 266 (658)
Q Consensus 234 ~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~~ 266 (658)
. +|.-|++.|+|-.-..+ --+++.++-+++..
T Consensus 1019 ~-~hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 1019 H-NHPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred c-CCCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 3 39999999999776653 34555555555554
No 308
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.49 E-value=31 Score=43.03 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCcEEEEeEEeecceec-----CCCeEEEEEEcCCeEEEEEE
Q psy8087 69 IITNINIPAIPGPPAIP-----GKGLMFVTLRDGSGFIQCVL 105 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~-----gk~l~Fi~LrD~~~~iQvv~ 105 (658)
.+..|+++|.|.++|.. |+.++|+.|.|.+|.+.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 45679999999865543 55699999999999999986
No 309
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=43.32 E-value=23 Score=31.12 Aligned_cols=57 Identities=28% Similarity=0.269 Sum_probs=39.8
Q ss_pred EEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEE
Q psy8087 534 VTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 534 i~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vl 595 (658)
+.|.||...+|+++.......-.-..|++||+|.+.=..+..- ++.--|.+.+++++
T Consensus 40 i~lSDG~~~~~amLatqln~~v~~g~l~~~sIirl~~y~~~~i-----~~k~viiIldlevl 96 (97)
T cd04477 40 ILLSDGVYYVQAMLATQLNPLVESGQLQRGSIIRLKRFICNVI-----KGKRILIILDLEVV 96 (97)
T ss_pred EEEEChhHHHHHHHhhhhhhHHhcCCccCCcEEEECeEEEEEe-----cCcEEEEEEeeEEe
Confidence 7889998889999876544443445799999999975554433 12335666777765
No 310
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=43.09 E-value=27 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=30.0
Q ss_pred EEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 366 SVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 366 ~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
-|+.|.+|. .||+|+.=- + .+ -|.-||++|+|||+.+|.
T Consensus 242 vFe~~~~~~-~i~~GGRYD-------------~--------------~~-~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 242 FFRFFDGNS-TLASGGNYE-------------I--------------DG-ISSSGFALYTDNLIEILL 280 (281)
T ss_pred EEEEEECCc-eeccccCCC-------------C--------------CC-CCcceEEeeHHHHHHHhh
Confidence 599999985 899997633 0 01 278999999999998775
No 311
>KOG3108|consensus
Probab=42.70 E-value=82 Score=32.98 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-hhhhhcCCCccEEEEEEEeEeCC
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|++.|+|+++-...-+ ++.+|-|++|.|=+..=..... .-..-.+..|..|.|.|.|+...
T Consensus 69 ~~v~~VGivr~~e~~~t~-i~y~I~D~tg~id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~f~ 132 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATN-ITYEIEDGTGQIDVRQWFHDNAESEEMPALETGTYVKVYGHLKPFQ 132 (265)
T ss_pred EEEEEEEEEEeceecCcc-eEEEEecCcccEEEEEeccccchhhhCcccccCcEEEeeecccCCC
Confidence 568999999999988766 6669999999866554322111 11122689999999999998643
No 312
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=42.09 E-value=1.5e+02 Score=38.54 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCcEEEEEEEEEee--e--cCCCceEEEEEEeCCEEEEEEEcCCc-cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 511 RDKRVTIFGWVHRL--R--RQGKGLMFVTLRDGSGFIQCVLADIL-CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 511 ~g~~V~v~GwI~~~--R--~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+..|+|.|.|-.+ | ..|+.+.=+.|.|.++.|-|..-... ...+....|+.|+.|.|+|.+.... -.+++
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~~~~~~~~~~~~g~~v~~~g~~~~d~----~~~~~ 310 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDKEDLKKFDEIKKGDWVKVRGSVQNDT----FTRDL 310 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCcchhHHHhcCCCCCEEEEEEEEeccC----CCCce
Confidence 45689999999876 2 34544655788898887655544322 2224456799999999999996533 14678
Q ss_pred EEEEEEEEEE
Q psy8087 586 ELKVDYWEVV 595 (658)
Q Consensus 586 El~~~~i~vl 595 (658)
.+.+..+..+
T Consensus 311 ~~~~~~~~~~ 320 (1437)
T PRK00448 311 VMNAQDINEI 320 (1437)
T ss_pred EEEeeeeeec
Confidence 8888777653
No 313
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=41.79 E-value=16 Score=40.21 Aligned_cols=89 Identities=20% Similarity=0.164 Sum_probs=59.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC---ccceee-ccCCcceeeccCHHHHHH--Hhcc-----cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP-----ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~-----g~~rvfeI~ 224 (658)
..+++.|...||..|+||+|...++ + |. ...|.+ +-.|..+.|| |++=.+ ++.+ .-.|+...|
T Consensus 25 ~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LR--pD~T~pVaR~~~~~~~~~P~Rl~Y~G 102 (390)
T COG3705 25 DQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLR--PDFTIPVARIHATLLAGTPLRLSYAG 102 (390)
T ss_pred HHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEec--ccccHHHHHHHHHhcCCCCceeeecc
Confidence 5788999999999999999965432 1 21 235643 4557778887 555544 2222 247899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
++||+..... .-..||+|.=+|.=+.
T Consensus 103 ~Vfr~~~~~~-g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 103 KVFRAREGRH-GRRAEFLQAGIELLGD 128 (390)
T ss_pred hhhhcchhcc-CcccchhhhhhHHhCC
Confidence 9999983322 2334899987776543
No 314
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=41.65 E-value=53 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.6
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRG 570 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G 570 (658)
.|.|+|.++.++| +|+++-- .+ +...+..+..... ..++.|+.|.+.=
T Consensus 7 ~v~g~V~si~d~G---~~v~~g~-~g-v~Gfl~~~~~~~~--~~~~~Gq~v~~~V 54 (74)
T cd05694 7 VLSGCVSSVEDHG---YILDIGI-PG-TTGFLPKKDAGNF--SKLKVGQLLLCVV 54 (74)
T ss_pred EEEEEEEEEeCCE---EEEEeCC-CC-cEEEEEHHHCCcc--cccCCCCEEEEEE
Confidence 4899999999998 6888821 11 4555554321111 4689999887763
No 315
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=41.28 E-value=1.4e+02 Score=27.47 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=43.1
Q ss_pred cEEEEeEEeecc------eecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 71 TNINIPAIPGPP------AIPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 71 ~~v~~~Grv~~~------r~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
..|.+.|.|..+ ++.++ .+.-+.|.|.||.|.+.+=.+.. ..+..|++|.|.+.....=.+.+.+.+
T Consensus 15 ~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~a-----~~l~~GdvV~I~na~v~~f~G~lqL~i 89 (129)
T PRK06461 15 ERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQA-----GSLKEGEVVEIENAWTTLYRGKVQLNV 89 (129)
T ss_pred CceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCcc-----ccCCCCCEEEEECcEEeeeCCEEEEEE
Confidence 468888888842 12232 26678999999999888755421 247899999999544333333344443
No 316
>PRK07211 replication factor A; Reviewed
Probab=41.25 E-value=1.5e+02 Score=33.87 Aligned_cols=89 Identities=25% Similarity=0.240 Sum_probs=59.5
Q ss_pred eecccCCccCCcEEEEEEEEEee---e----cCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL---R----RQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GR 571 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~---R----~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~ 571 (658)
.+|.++.. ....|.|.|+|.++ | ..|+ ++.=++|-|.+|.|.+.+=.+.. ..+..|..|++|.|. |.
T Consensus 162 ~~I~dL~~-~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~A--d~~~~le~G~Vv~I~~a~ 238 (485)
T PRK07211 162 YTVEDLSL-GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDRA--DLAEELDAGESVEIVDGY 238 (485)
T ss_pred ccHHHcCC-CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechhh--hhhccCCCCCEEEEEeeE
Confidence 34555442 35678999999854 2 2231 45668999999999888865432 223568999999998 55
Q ss_pred EEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 572 IEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 572 v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
+.. ..+++||.+..-..+.++.
T Consensus 239 Vre------~~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 239 VRE------RDGSLELHVGDRGAVEEVD 260 (485)
T ss_pred EEe------cCCcEEEEECCCceEEECC
Confidence 532 2478999887666666653
No 317
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=41.20 E-value=1.2e+02 Score=32.52 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=37.0
Q ss_pred ecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 84 IPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 84 ~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
+.|+.-..+.|.|.||.|...+=....+ ....+..|++|.|.|.+..-..
T Consensus 29 knG~~yl~l~l~D~tG~I~ak~W~~~~~--~~~~~~~g~vv~v~G~v~~y~g 78 (314)
T PRK13480 29 SNGKPFLTLILQDKSGDIEAKLWDVSPE--DEATYVPETIVHVKGDIINYRG 78 (314)
T ss_pred CCCCeEEEEEEEcCCcEEEEEeCCCChh--hHhhcCCCCEEEEEEEEEEECC
Confidence 4566677788999999999988543321 1246899999999999975433
No 318
>PRK07218 replication factor A; Provisional
Probab=41.03 E-value=1.8e+02 Score=32.61 Aligned_cols=80 Identities=25% Similarity=0.167 Sum_probs=51.6
Q ss_pred eeecccCCccCCcEEEEEEEEEeee-----cCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLR-----RQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R-----~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
-.+|.++... ++.|.|.|+|-++- ..|+ .+.=+.|-|.+|+|.+++=.+. .|..||+|.|.+-..
T Consensus 58 ~~kI~Di~~~-~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~~-------~l~~Gdvv~I~na~v 129 (423)
T PRK07218 58 SKDIKELSTD-DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKDF-------GLSPGDTVTIGNAGV 129 (423)
T ss_pred CccHhhCCCC-CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECCC-------CCCCCCEEEEeccEe
Confidence 3456666433 57899999998883 1121 4555666777777766664321 399999999997654
Q ss_pred ecCCCCCCCCceEEEEEEEE
Q psy8087 574 KVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~ 593 (658)
+.- .|.++|.+.+-.
T Consensus 130 re~-----~g~~el~ig~~t 144 (423)
T PRK07218 130 REW-----DGRPELNIGEST 144 (423)
T ss_pred ecc-----CCceEEeccCcc
Confidence 433 456777765443
No 319
>PLN02734 glycyl-tRNA synthetase
Probab=40.89 E-value=9.1 Score=45.10 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=34.0
Q ss_pred CcceeeccCHHHH------HHHhcc-c---C-CcEEEEeeeeecCCCCCccC----cceeeeeeeEeecCCH
Q psy8087 197 GEPAYLTQSSQLY------LETCLP-A---L-GDVYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTF 253 (658)
Q Consensus 197 ~~~~~L~~Spqly------lk~li~-g---~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~ 253 (658)
+...||| ||-- -|+|+- . + =-+-|||++||||=+ . |+ .-||||.|+|. |.|-
T Consensus 246 ~~~~YLR--PETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIs-P-R~gl~R~REF~qaEiE~-Fv~P 312 (684)
T PLN02734 246 LSVGYMR--PETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEIS-P-RQGLLRVREFTLAEIEH-FVDP 312 (684)
T ss_pred Cccceec--ccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccC-c-ccceeeechhhhhhhhe-ecCc
Confidence 3578998 4432 334443 2 2 238999999999943 2 32 46999999987 4443
No 320
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=39.87 E-value=1.2e+02 Score=37.98 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=56.7
Q ss_pred cEEEEEEEEEee----ecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 513 KRVTIFGWVHRL----RRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 513 ~~V~v~GwI~~~----R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.+|+|.|-|-.+ ..+|+.+.=+.+.|.+.+ +|..+.. ....+.+..|+.|+.|.|+|.+.... .++++.
T Consensus 240 ~~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~-~ed~~~~~~ik~g~wvk~~g~v~~d~----f~~~l~ 314 (1444)
T COG2176 240 TRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRD-EEDEKKFDGIKKGMWVKARGNVQLDT----FTRDLT 314 (1444)
T ss_pred cceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhccc-cccHHHHhhcccCcEEEEEEEEEecc----cccceE
Confidence 349999999775 446677777888888875 4444432 22235667899999999999998754 367788
Q ss_pred EEEEEEEEEe
Q psy8087 587 LKVDYWEVVG 596 (658)
Q Consensus 587 l~~~~i~vls 596 (658)
+.+++|.-+.
T Consensus 315 m~i~~I~ei~ 324 (1444)
T COG2176 315 MIINDINEIE 324 (1444)
T ss_pred EEhhhhhhhh
Confidence 8888876554
No 321
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=39.68 E-value=8.1 Score=44.52 Aligned_cols=48 Identities=29% Similarity=0.366 Sum_probs=32.4
Q ss_pred CcceeeccCHHHH------HHHhcc-c---C-CcEEEEeeeeecCCCCCccC----cceeeeeeeEe
Q psy8087 197 GEPAYLTQSSQLY------LETCLP-A---L-GDVYCIAQSYRAENSRTRRH----LAEYTHVEAEC 248 (658)
Q Consensus 197 ~~~~~L~~Spqly------lk~li~-g---~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~ 248 (658)
+...||| ||.. -++++- . + =.+-|||++||||=+ .|+ .-||||+|+|.
T Consensus 154 ~~~~yLR--PETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIs--Pr~~l~R~REF~q~EiE~ 216 (551)
T TIGR00389 154 KRKGYLR--PETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEIS--PRNGLFRVREFEQAEIEF 216 (551)
T ss_pred Ccccccc--cccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccC--cccceEEeehhhhchhhe
Confidence 4578998 4432 334443 2 2 248999999999943 243 46999999987
No 322
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=39.46 E-value=39 Score=38.58 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred cEEEEeeeeecCCCCCccCcceeeeeeeEee--cCCHHHHHHHHHHHHH
Q psy8087 219 DVYCIAQSYRAENSRTRRHLAEYTHVEAECA--FLTFDDLLDKLEDLIC 265 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a--~~d~~~~m~~~e~li~ 265 (658)
|+||||+|||.+.....+|+..+.+...-.. -.|+.|+...++.|+.
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~ 258 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLS 258 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHH
Confidence 8999999998853212367766666532111 1378888888887775
No 323
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=39.30 E-value=1.4e+02 Score=28.78 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=44.3
Q ss_pred CCcEEEEeEEee--cceecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeE
Q psy8087 69 IITNINIPAIPG--PPAIPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 69 ~~~~v~~~Grv~--~~r~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~ 131 (658)
.++.++|.|.|. ++.|.+. .+.| .+.|+...+.|..+.-... .++.|.-|.++|.+.
T Consensus 50 ~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPD-----lFrEGqgVVaeG~~~ 110 (155)
T PRK13159 50 GYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGILPD-----LFRDNQSVIANGRMQ 110 (155)
T ss_pred cCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccCCCc-----cccCCCeEEEEEEEc
Confidence 357789999988 7888766 3577 7889999999988753321 367899999999996
No 324
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=39.03 E-value=16 Score=37.69 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=40.3
Q ss_pred cCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-CCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcc
Q psy8087 361 PALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-GIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439 (658)
Q Consensus 361 ~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ir 439 (658)
..+...||+-++|| ||.- -.-|.+. |++ --|.++=+--|+|||.|.|-|.+||-
T Consensus 119 GAwGlGWEVWldGM-EITQ-----------fTYFQQvGGi~-------------~~pv~~EITYGLERiamylQ~vdnv~ 173 (284)
T PF02091_consen 119 GAWGLGWEVWLDGM-EITQ-----------FTYFQQVGGID-------------CKPVSVEITYGLERIAMYLQGVDNVY 173 (284)
T ss_dssp TEEEEEEEEEETTC-EEEE-----------EEEEEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGG
T ss_pred cccccccEEEECCE-EEEE-----------eeeeeeeCCcc-------------ccccceehhhhHHHHHHHHhCCCeeE
Confidence 34678999999999 8852 1122222 222 13677889999999999999999999
Q ss_pred hhhH
Q psy8087 440 DKYQ 443 (658)
Q Consensus 440 dvi~ 443 (658)
|++.
T Consensus 174 dl~w 177 (284)
T PF02091_consen 174 DLIW 177 (284)
T ss_dssp GSEE
T ss_pred eeee
Confidence 9865
No 325
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=38.47 E-value=37 Score=37.57 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=34.1
Q ss_pred EEEEEeCCcc---eeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcc
Q psy8087 366 SVDVLFPNVG---EVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 366 ~fdL~~~G~~---Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~ 435 (658)
-|+.+.++.| -||+|+. |+.+..+|.. . ..|..||++|+|||+.++...
T Consensus 263 vFe~~~~~~g~~~~i~~GGR----YD~L~~~f~~--~---------------~~pavGfs~~le~l~~~l~~~ 314 (412)
T PRK00037 263 VFEFVTDDLGAQGTVCGGGR----YDGLVEQFGG--P---------------PTPAVGFAIGVERLLLLLEEL 314 (412)
T ss_pred EEEEEECCCCccceeeeccc----hhHHHHHhCC--C---------------CCceEEEEEcHHHHHHHHHhc
Confidence 4899987542 6777764 5566665521 1 246779999999999888654
No 326
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=38.44 E-value=19 Score=37.00 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=44.2
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
.+...||+-++|| ||. |-.-|.+.| ++ --|..+=+--|+|||.|.|-|.+||-|
T Consensus 121 AwGLGWEVWldGM-EIT-----------QFTYFQQvGGi~-------------~~pv~~EiTYGLERiamylQ~vd~v~d 175 (279)
T cd00733 121 AWGLGWEVWLDGM-EVT-----------QFTYFQQVGGIP-------------CKPISVEITYGLERIAMYLQGVDNVYD 175 (279)
T ss_pred ccccccEEEECCe-eee-----------eeeeeeeeCCee-------------ccccceeeehhHHHHHHHHhCCCceec
Confidence 4567899999999 885 344454443 33 137788899999999999999999999
Q ss_pred hhHH
Q psy8087 441 KYQL 444 (658)
Q Consensus 441 vi~f 444 (658)
...=
T Consensus 176 l~w~ 179 (279)
T cd00733 176 IEWN 179 (279)
T ss_pred cccC
Confidence 8653
No 327
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=38.14 E-value=37 Score=37.91 Aligned_cols=51 Identities=12% Similarity=0.398 Sum_probs=34.6
Q ss_pred EEEEEeCC--cc-eeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcc
Q psy8087 366 SVDVLFPN--VG-EVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 366 ~fdL~~~G--~~-Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~ 435 (658)
-|+.|..+ .+ .||+|+. |+.+...|...+. -.|.-||++|+|||+.++...
T Consensus 279 vFe~~~~~~~~~~~i~~GGR----YD~L~~~f~~~~~---------------~~pAvGfa~~~~~l~~~l~~~ 332 (423)
T PRK12420 279 VYEIFLKDGSITSSIGSGGR----YDNIIGAFRGDDM---------------NYPTVGISFGLDVIYTALSQK 332 (423)
T ss_pred EEEEEecCCCccccccCCcc----HHHHHHHhCCCCC---------------CCCceeEEEcHHHHHHHHHhc
Confidence 48999875 22 5888863 6666666632111 137889999999999888653
No 328
>PRK07218 replication factor A; Provisional
Probab=37.81 E-value=2.3e+02 Score=31.82 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=47.6
Q ss_pred CcEEEEEEEEEee-------ecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 512 DKRVTIFGWVHRL-------RRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 512 g~~V~v~GwI~~~-------R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
+..|+|.|+|..+ |+..+.+.=..|-|.+|.|.+++=.+ ...|..||+|.|.|-..+.- .|.
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~------~~~l~~Gd~v~I~na~v~e~-----~G~ 240 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDP------LPEIEIGASIRIEDAYVREF-----RGV 240 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEecc------cccCCCCCEEEEeeeEEecc-----CCe
Confidence 3457888888766 11111333346777777777766442 22589999999999776543 577
Q ss_pred eEEEEEEEEEEe
Q psy8087 585 HELKVDYWEVVG 596 (658)
Q Consensus 585 ~El~~~~i~vls 596 (658)
+||.+.+..-+.
T Consensus 241 ~elnv~~~t~I~ 252 (423)
T PRK07218 241 PSVNVSEFTTVE 252 (423)
T ss_pred EEEEECCceEEE
Confidence 889887444333
No 329
>PRK08402 replication factor A; Reviewed
Probab=37.79 E-value=2.1e+02 Score=31.35 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=54.9
Q ss_pred eeecccCCccCCcEEEEEEEEEee---e----cCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-E
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRL---R----RQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-G 570 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~---R----~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G 570 (658)
..+|.++.. ..+.|++.|+|.++ | ..|. ++.=++|-|.+|.+.+++=.+... .....|..||+|.|. |
T Consensus 62 ~~kI~dl~~-g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a~-~~~~~l~~Gdvi~I~~a 139 (355)
T PRK08402 62 LMHISDLVP-GMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKVA-KYYNKINVGDVIKVIDA 139 (355)
T ss_pred ccCHHHccC-CCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhhh-hhcccCCCCCEEEEECC
Confidence 345665532 23689999999886 3 1232 233389999999998877543211 123459999999998 4
Q ss_pred EEEecCCCCCCCCceEEEEEEEEEE
Q psy8087 571 RIEKVPEGKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 571 ~v~~~~~~~~~~g~~El~~~~i~vl 595 (658)
.+..-- .|.+||.+..-..+
T Consensus 140 ~V~e~~-----~G~~eLsvg~~s~i 159 (355)
T PRK08402 140 QVRESL-----SGLPELHINFRARI 159 (355)
T ss_pred EEeecC-----CCcEEEEECCCceE
Confidence 443211 35558888655433
No 330
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=37.20 E-value=19 Score=37.09 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=44.3
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
.+...||+-++|| ||. |-.-|.+.| ++- -|..+=+--|+|||.|.|-|.+||-|
T Consensus 125 AwGlGWEVWldGM-EIT-----------QFTYFQQvGGi~~-------------~pv~~EITYGLERiamylQ~vd~v~d 179 (283)
T PRK09348 125 AWGLGWEVWLDGM-EVT-----------QFTYFQQVGGIEC-------------KPVTGEITYGLERLAMYLQGVDNVYD 179 (283)
T ss_pred ccccceEEEECCe-eee-----------eeeeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceee
Confidence 4567899999999 884 344454443 331 36788899999999999999999999
Q ss_pred hhHH
Q psy8087 441 KYQL 444 (658)
Q Consensus 441 vi~f 444 (658)
+..=
T Consensus 180 l~w~ 183 (283)
T PRK09348 180 LVWN 183 (283)
T ss_pred eecC
Confidence 8654
No 331
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=36.99 E-value=1.3e+02 Score=23.47 Aligned_cols=50 Identities=22% Similarity=0.184 Sum_probs=37.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEE-EEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSGF-IQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~-iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
.+.|.|..+...| ...++.+.-+++. |-+.++... ..-..|..|+-|.+.
T Consensus 6 ~l~g~V~~ie~~g-~~~~v~~~~~~~~~l~a~it~~~---~~~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG-SEVEVTLDLGGGETLTARITPES---AEELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS-SEEEEEEEETTSEEEEEEEEHHH---HHHCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEEcHHH---HHHcCCCCCCEEEEE
Confidence 5899999999998 7999999998887 888876522 223458999998874
No 332
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=36.98 E-value=1.6e+02 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=35.9
Q ss_pred EEEEeEEeec---cee--cCCCeEEEEEE-------cCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 72 NINIPAIPGP---PAI--PGKGLMFVTLR-------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 72 ~v~~~Grv~~---~r~--~gk~l~Fi~Lr-------D~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.|+|.|||.+ +|. .|+.++-+.|- +.+..+.|++-.+..+ .-...++.|+.|.|+|.++..
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~l~~~ 77 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQ-VAADYVKKGSLIGITGSLKFD 77 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHH-HHHHHcCCCCEEEEEEEEEec
Confidence 4677777776 332 33333333332 2334577776554322 122468999999999999864
No 333
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=36.97 E-value=20 Score=44.04 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=45.2
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
.+...||+-++|| ||. |-.-|.+.|.-+ --|..+=+--|+|||.|.|-|.+||-|+
T Consensus 126 a~glgwevw~~gm-eit-----------qftyfqq~gg~~------------~~~~~~eitygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 126 AWGLGWEVWLDGM-EIT-----------QFTYFQQAGGKP------------LDPISGEITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred ccccccEEEECCe-eee-----------eeeeehhcCCee------------ccccceeeeccHHHHHHHHhCCCeeeee
Confidence 4667899999999 884 445555543211 1477888999999999999999999987
Q ss_pred hHH
Q psy8087 442 YQL 444 (658)
Q Consensus 442 i~f 444 (658)
..=
T Consensus 182 ~~~ 184 (1000)
T PRK14908 182 AWN 184 (1000)
T ss_pred ecC
Confidence 654
No 334
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=35.03 E-value=2.9e+02 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=30.9
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEE
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYW 592 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i 592 (658)
.+.|++-.... ...+..|+.||.|.|+|.+....=. + .+...+||.|++|
T Consensus 54 fi~V~~Wg~~A-e~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 54 FLRCSIWRQAA-ENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEecHHH-HHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 46777655322 1234569999999999999765311 1 1112367777765
No 335
>PRK04036 DNA polymerase II small subunit; Validated
Probab=34.62 E-value=1.2e+02 Score=34.66 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=45.7
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
.++++.|-|-|..++...++-..+.|-|.+|.|++++.++....+. ...+-.|.+|.|.|.+..
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcC
Confidence 4578999999988875444333579999999999998654211111 125778999999998763
No 336
>PRK06386 replication factor A; Reviewed
Probab=34.47 E-value=2.8e+02 Score=30.43 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=50.3
Q ss_pred eecccCCccCCcEEEEEEEEEeeec------CC-CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRR------QG-KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~------~G-kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
.+|.++.. -..-|.|.|+|..+-. .| ..+.=..|-|.+|+|.+++ |...|..|++|.|.+-...
T Consensus 108 ~KI~DL~~-g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~Tl--------W~~~l~eGd~v~i~na~v~ 178 (358)
T PRK06386 108 VKIRDLSL-VTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISS--------FGKPLEDNRFVRIENARVS 178 (358)
T ss_pred cEeEeccC-CCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEE--------ccccccCCCEEEEeeeEEE
Confidence 35555432 2345778888865411 01 1233344455555554443 3446899999999997755
Q ss_pred cCCCCCCCCceEEEEEEEEEEecC
Q psy8087 575 VPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 575 ~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .|.+||.+.....+.+.
T Consensus 179 e~-----~G~~el~v~~~t~I~~~ 197 (358)
T PRK06386 179 QY-----NGYIEISVGNKSVIKEV 197 (358)
T ss_pred cc-----CCeEEEEeCCeEEEEEC
Confidence 33 58899999888776664
No 337
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=33.26 E-value=41 Score=35.69 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
...+++.+|++.+++.+.+.||.||.||
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P 77 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPP 77 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECc
Confidence 4668899999999999999999999998
No 338
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=32.52 E-value=1.6e+02 Score=23.04 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=37.6
Q ss_pred EEeEEeecceecCCCeEEEEEEcCCeE-EEEEEecccchhhhhhcCCCccEEEEE
Q psy8087 74 NIPAIPGPPAIPGKGLMFVTLRDGSGF-IQCVLADILCQTEHALLLSTESSVQFR 127 (658)
Q Consensus 74 ~~~Grv~~~r~~gk~l~Fi~LrD~~~~-iQvv~~~~~~~~~~~~~l~~es~V~v~ 127 (658)
.+.|+|..+...| ..+++.+.-+.+. |-+.+.... +....|..|+.|.+.
T Consensus 6 ~l~g~V~~ie~~g-~~~~v~~~~~~~~~l~a~it~~~---~~~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG-SEVEVTLDLGGGETLTARITPES---AEELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS-SEEEEEEEETTSEEEEEEEEHHH---HHHCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEEcHHH---HHHcCCCCCCEEEEE
Confidence 6899999988887 5899999999887 888887643 233568899988764
No 339
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=31.54 E-value=2.1e+02 Score=27.26 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=36.0
Q ss_pred EEEEeEEeec---ceec--CCCeEEEEEE------c---C-----CeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 72 NINIPAIPGP---PAIP--GKGLMFVTLR------D---G-----SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~---~r~~--gk~l~Fi~Lr------D---~-----~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+|.|||.+ +|.. |+.++-+.|- | + +.-+.|++-.+.....-...++.|+.|.|.|.++.
T Consensus 7 ~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~~ 86 (152)
T PRK06642 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQT 86 (152)
T ss_pred EEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5788888887 4543 3334333443 1 1 12366665443111122246899999999999985
Q ss_pred C
Q psy8087 133 V 133 (658)
Q Consensus 133 ~ 133 (658)
.
T Consensus 87 ~ 87 (152)
T PRK06642 87 R 87 (152)
T ss_pred C
Confidence 4
No 340
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=31.25 E-value=1.4e+02 Score=34.58 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=59.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccce--------ee-ccCC-cceeeccC--HHHHHHHhc--ccC--CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLF--------SL-NFFG-EPAYLTQS--SQLYLETCL--PAL--GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F--------~~-~~~~-~~~~L~~S--pqlylk~li--~g~--~rvfeI 223 (658)
..+|++|...||.|+-|-.|+... ..-+.+ .+ |-.. ..-+||.| |.|-.-..- .+. -|+|||
T Consensus 369 ~~ir~~L~~~Gf~E~itysf~s~~--~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEi 446 (551)
T TIGR00471 369 DIIREIMVGLGFQEVIPLTLTSEE--VNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEI 446 (551)
T ss_pred HHHHHHHHhCCceeeccceEccHH--HHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeEEEE
Confidence 478999999999999999996431 100111 11 1111 12355554 333322111 121 279999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeec--CCHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAF--LTFDDLLDKLEDLICD 266 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~--~d~~~~m~~~e~li~~ 266 (658)
|++|...+.+. .+-.+|.++-+-.+. .|+.|+...+|.|+..
T Consensus 447 G~Vf~~~~~~~-~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 447 GDVVVKDDKSE-TRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred EEEEEcCCccc-cccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99996532111 233445666666654 3888888888888853
No 341
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=30.57 E-value=27 Score=36.15 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=44.0
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
.+...||+-++|| ||. |-.-|.+.| ++- -|..+=+--|+|||.|.|-|.+||-|
T Consensus 122 AwGlGWEVWldGM-EIT-----------QFTYFQQvGGi~~-------------~pv~~EITYGLERiaMylQ~vd~v~d 176 (293)
T TIGR00388 122 AWGLGWEVWLDGM-EVT-----------QFTYFQQVGGLEC-------------KPVSVEITYGLERLAMYIQGVENVYD 176 (293)
T ss_pred ccccccEEEECCe-eee-----------eeeeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCeeee
Confidence 4567899999999 874 344454443 321 36678899999999999999999999
Q ss_pred hhHH
Q psy8087 441 KYQL 444 (658)
Q Consensus 441 vi~f 444 (658)
...=
T Consensus 177 l~w~ 180 (293)
T TIGR00388 177 LEWS 180 (293)
T ss_pred eeec
Confidence 8654
No 342
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=30.45 E-value=2.5e+02 Score=22.13 Aligned_cols=50 Identities=20% Similarity=0.038 Sum_probs=34.8
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
.+.|.|.++...| ..+-+.|.-+++ .+.+.++... ..-..|+.|+.|.+.
T Consensus 8 ~l~g~I~~i~~~g-~~~~v~l~~~~~~~l~a~i~~~~---~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGD-VNAEVDLLLGGGTKLTAVITLES---VAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEecHHH---HhhCCCCCCCEEEEE
Confidence 5899999998877 566677776555 6777776421 122358899988775
No 343
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=30.36 E-value=1.3e+02 Score=23.81 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=32.0
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc---h-HHhccCCCCcEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ---T-EHALLLSTESSVQFR 569 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~---~-~~~~~L~~gs~V~V~ 569 (658)
.+.|+|.++...| +|+.|-++ +...+...... . .....++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG---VFVTLGRG---VDARVRVSELSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc---EEEEeCCC---CEEEEEHHHCCchhhcCHhhccCCCCEEEEE
Confidence 3789999999887 78998653 55555432111 1 223458999998885
No 344
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=30.32 E-value=35 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred CccceecchhHHHHHHhcccCcchh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
|...+.|++|+|+|+.-|.++||..
T Consensus 188 ~v~~~Eidl~~l~~~~~~~~~~~~~ 212 (218)
T cd00496 188 SGFAFGIGLERLAMLKYGIPDIRLF 212 (218)
T ss_pred eEEEEEecHHHHHHHHhCCcHHHHH
Confidence 4468899999999999999999963
No 345
>PLN02678 seryl-tRNA synthetase
Probab=29.68 E-value=54 Score=37.03 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 632 VLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 632 ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..+++.++++++++++.++||.||.||
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P 199 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTP 199 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECc
Confidence 378899999999999999999999998
No 346
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=28.98 E-value=46 Score=37.37 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 635 MRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 635 ~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
-.+.+.+.+|++|...||.||.||
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TP 264 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSP 264 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECC
Confidence 457788999999999999999998
No 347
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=28.93 E-value=49 Score=36.37 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=31.3
Q ss_pred EEEEEeCCc--ceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHH
Q psy8087 366 SVDVLFPNV--GEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCW 431 (658)
Q Consensus 366 ~fdL~~~G~--~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~ 431 (658)
-|+++.+|. +.||+|+ +|+.|..+|-. |. -.|.-||+||+|||+.+
T Consensus 323 VFe~~~~~~~~~~I~~GG----RYD~Li~~fg~-~~---------------~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 323 VFEIRAAGNGDPPLAGGG----RYDGLLTRLGA-GE---------------PIPAVGFSIWLDRLAAL 370 (373)
T ss_pred EEEEEECCCCCCcccCCc----CHHHHHHHhCC-CC---------------CCCeeEEEEcHHHHHhh
Confidence 588888764 3688886 36667766631 11 23678999999998643
No 348
>PLN02908 threonyl-tRNA synthetase
Probab=28.87 E-value=49 Score=39.47 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|++.+|+.+.+.||.||.||
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP 346 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITP 346 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 4567899999999999999999999999
No 349
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=28.82 E-value=51 Score=38.22 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.++|..|.+.+|+.+.+.||.||.||
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP 193 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTS 193 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECC
Confidence 4578999999999999999999999999
No 350
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=28.52 E-value=48 Score=38.69 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.1
Q ss_pred CccceecchhHHHHHHhcccCcchh-hHHHHH
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK-YQLIAK 447 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv-i~f~~k 447 (658)
++-.-|+|+|||+++|-|.+|+=|+ +..|.-
T Consensus 224 k~IDTGmGLERl~~vlqg~~s~ydtdlf~pii 255 (594)
T PRK01584 224 KCVDTGMGIERTIAFLQGKSSVYDTEAFTPII 255 (594)
T ss_pred CceeCCcCHHHHHHHHcCCCCccchhhhHHHH
Confidence 5678899999999999999999999 555433
No 351
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=28.41 E-value=4.6e+02 Score=23.97 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=0.0
Q ss_pred CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC-CCCccceEec
Q psy8087 65 PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV-PEENMKVQLI 143 (658)
Q Consensus 65 ~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~-p~~~~d~~l~ 143 (658)
+....|+.|.+-||+.. -+...+++=+.=.-.++.-|+.++.+..+.+. .+.||.+.+-|.+... +.+..-+..
T Consensus 16 ~~~~~g~svR~~GrL~~-yD~~~~~a~l~~~~~~~~~~l~V~t~~l~~~~---~~~gslyq~iGEl~~~~~~~~~~L~A- 90 (118)
T PF15490_consen 16 GFVPEGKSVRTFGRLQS-YDVATSRATLTAQHESDQHSLKVDTKLLEPFQ---ARVGSLYQFIGELEHQPQDGGIVLKA- 90 (118)
T ss_pred ccccCCCeEEEEEEEEE-EeccCCEEEEEeeccCCCcEEEEEeeEccccc---cCCCCEEEEEEEEEEEcCCCcEEEEE-
Q ss_pred CCCceeEEeecCCccc------CchHHHhhhC
Q psy8087 144 HPSSYAIVWLGDLKQG------GYPPEVSLAN 169 (658)
Q Consensus 144 ~p~~R~l~lr~~~~~~------~~iR~fl~~~ 169 (658)
|.+..--..... ..-|.|+.++
T Consensus 91 ----RV~r~VdG~Dl~Ly~~al~~rRkf~~~r 118 (118)
T PF15490_consen 91 ----RVLRCVDGMDLNLYEQALQERRKFLQER 118 (118)
T ss_pred ----EEEEecCCcCHHHHHHHHHHHHHHhhcC
No 352
>KOG1936|consensus
Probab=28.01 E-value=1.5e+02 Score=33.10 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEeecCCccc--------------CchHHHhhhCCcEEEcCC------ccccccCCCCccceeeccCC-----cceeecc
Q psy8087 150 IVWLGDLKQG--------------GYPPEVSLANGIAKVTPP------TLVQTQVEGGSTLFSLNFFG-----EPAYLTQ 204 (658)
Q Consensus 150 l~lr~~~~~~--------------~~iR~fl~~~gF~EV~TP------iL~~~~~eG~~~~F~~~~~~-----~~~~L~~ 204 (658)
.+|.+|.-.+ +.|.+-|..+|..+|+|| +|+.--.|..--.+.+..-| ..+=|++
T Consensus 58 ~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTV 137 (518)
T KOG1936|consen 58 FSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTV 137 (518)
T ss_pred eeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeeccccc
Q ss_pred CHHHHHHHhcccCCcEEEEeeeeecCCCCCcc-CcceeeeeeeEeec-----CCHHHHHHHHHHHHHHH
Q psy8087 205 SSQLYLETCLPALGDVYCIAQSYRAENSRTRR-HLAEYTHVEAECAF-----LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 205 Spqlylk~li~g~~rvfeI~~~FR~E~~~~~r-Hl~EFt~lE~e~a~-----~d~~~~m~~~e~li~~i 267 (658)
+=--|+-|-=.--=+-|.||++||-+...-.| -.-||.||||-.|. .--.+.+..+-+++..+
T Consensus 138 PfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 138 PFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred HHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
No 353
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.73 E-value=66 Score=26.00 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhcCCcEEe
Q psy8087 634 LMRSVLLQALRAHFADRNYTEV 655 (658)
Q Consensus 634 r~Rs~i~~~iR~fL~~~gF~EV 655 (658)
+.|.+|++.||+||.+.|=++|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4689999999999999996654
No 354
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=27.29 E-value=3e+02 Score=21.44 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=37.2
Q ss_pred EEEEEEEeeecCCCceEEEEEEeC--CEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDG--SGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~--~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
.+.|.|..++..| ..+.++|... +..|.+-++.+. ....+..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G-~~vRlEl~~~~~~~~iEvel~~~~----~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG-PEVRLELKRLDDGEPIEVELPRER----RQLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC-CeEEEEEEECCCCCEEEEEeCHhH----HhcCCCCCCEEEEE
Confidence 4789999999999 6999999655 336888887642 23457779999875
No 355
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=26.81 E-value=2.5e+02 Score=27.74 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=22.0
Q ss_pred eEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 99 GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 99 ~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..+-|++-....+ .....|+.|+.|.|+|.|+..
T Consensus 49 ~fi~v~~fg~~AE-~~~~~l~KG~~V~VeGrL~~~ 82 (182)
T PRK08486 49 CFIDIRLFGRTAE-IANQYLSKGSKVLIEGRLTFE 82 (182)
T ss_pred eEEEEEEEhHHHH-HHHHHcCCCCEEEEEEEEEeC
Confidence 3455555443222 122469999999999999854
No 356
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=26.77 E-value=2.7e+02 Score=26.95 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred EEEEeEEeec---cee--cCCCeEEEEEE------c-----CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 72 NINIPAIPGP---PAI--PGKGLMFVTLR------D-----GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 72 ~v~~~Grv~~---~r~--~gk~l~Fi~Lr------D-----~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.|.|.|||.+ +|- .|..++-+.|- + .+..+.|++-.+..+ .-...++.|+.|.|+|.++..
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae-~~~~~l~KG~~V~VeGrl~~r 80 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAE-NLANWAKKGALIGVTGRIQTR 80 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHH-HHHHHcCCCCEEEEEEEEEec
Confidence 3667777765 332 34444444442 1 123477776554322 122468999999999999864
No 357
>PRK02801 primosomal replication protein N; Provisional
Probab=25.71 E-value=4.2e+02 Score=23.28 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=22.3
Q ss_pred EEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 100 FIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 100 ~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+|++-.+..+. -...+..|+.|.|+|.+..
T Consensus 49 ~i~~va~G~~Ae~-~~~~l~kGs~v~V~G~L~~ 80 (101)
T PRK02801 49 RMPVIVSGNQFQA-ITQSITVGSKITVQGFISC 80 (101)
T ss_pred EEEEEEEcHHHHH-HHhhcCCCCEEEEEEEEEE
Confidence 3777776543221 1235899999999999985
No 358
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=25.64 E-value=63 Score=36.34 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 632 VLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 632 ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
-.+++.+|.+.+|+.+...||.||.||
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P 72 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMP 72 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 467899999999999999999999998
No 359
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=25.14 E-value=61 Score=36.66 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhc--CCcEEecCC
Q psy8087 633 LLMRSVLLQALRAHFAD--RNYTEVNIE 658 (658)
Q Consensus 633 fr~Rs~i~~~iR~fL~~--~gF~EVeTp 658 (658)
.++|..|.++.|+.+.. .||.||.||
T Consensus 38 ~~l~~~i~~~~r~~~~~~~~~~~ev~tp 65 (456)
T PRK04173 38 VELKNNIKRAWWKSFVQEREDVVGIDSP 65 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEecc
Confidence 46789999999999987 799999998
No 360
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=24.35 E-value=1.9e+02 Score=32.38 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=46.3
Q ss_pred cEEEEeEEeec--ceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCC
Q psy8087 71 TNINIPAIPGP--PAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 71 ~~v~~~Grv~~--~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p 134 (658)
..+.|.|++-. ...-| +..|+.+.|+.|.|=+++.....+.- .+..|.+||.|.+.|.+++-.
T Consensus 267 ~~~~v~g~v~~~p~~ieG-ghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~~ 332 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEG-GHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPGT 332 (421)
T ss_pred cceEEEEEEecccEEeeC-CEEEEEecCCCceEEEEEecccccchHHHHhcCCCCEEEEecCccccc
Confidence 45788887765 23345 47999999999999988876543211 235799999999999998643
No 361
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=24.24 E-value=2.5e+02 Score=21.91 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=36.6
Q ss_pred EEeEEeecceecCCCeEEEEEEcC-Ce-EEEEEEecccchhhhhhcCCCccEEEEE
Q psy8087 74 NIPAIPGPPAIPGKGLMFVTLRDG-SG-FIQCVLADILCQTEHALLLSTESSVQFR 127 (658)
Q Consensus 74 ~~~Grv~~~r~~gk~l~Fi~LrD~-~~-~iQvv~~~~~~~~~~~~~l~~es~V~v~ 127 (658)
.+.|+|..++..|. .+.++|... ++ .|.+-++.+. . ...+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G~-~vRlEl~~~~~~~~iEvel~~~~-~---~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVGP-EVRLELKRLDDGEPIEVELPRER-R---QLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecCC-eEEEEEEECCCCCEEEEEeCHhH-H---hcCCCCCCEEEEE
Confidence 57889999999995 799999655 33 5888887754 2 2457779988774
No 362
>PLN02972 Histidyl-tRNA synthetase
Probab=24.18 E-value=64 Score=38.76 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 629 TSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 629 ~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.-...|..|...+++.|..+||.||+||
T Consensus 337 lP~e~~~re~I~~~L~~vFk~hGy~eI~TP 366 (763)
T PLN02972 337 AKEQMAIREKAFSIITSVFKRHGATALDTP 366 (763)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCC
Confidence 335677899999999999999999999999
No 363
>KOG2298|consensus
Probab=24.07 E-value=18 Score=40.50 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=27.8
Q ss_pred Chhhhcccceeeeec-hhhHHHHHHHHHHHHHHHHHhhc
Q psy8087 612 LPDVQLDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFAD 649 (658)
Q Consensus 612 ~~e~r~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~ 649 (658)
|.|+ +.++-+-||- +.++++----+.+...+.++...
T Consensus 557 Dfdt-lk~~tVTlReRdS~~QvR~~i~e~~s~v~~~~~g 594 (599)
T KOG2298|consen 557 DFDT-LKNGTVTLRERDSTMQVRMHISKLKSFLIKYISG 594 (599)
T ss_pred chhh-hcCceEEEeecccHHHHHhhHHHHHHHHHHHhcc
Confidence 4555 4457788888 57888888888888888888754
No 364
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=23.74 E-value=60 Score=39.96 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=46.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-c-----CCcEEEEeeeeecCCC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-A-----LGDVYCIAQSYRAENS- 232 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g-----~~rvfeI~~~FR~E~~- 232 (658)
+.+-+||.++|..-|..--+.+- ..-+++|..|.-.-.|-... | ..|+-..-||.|..++
T Consensus 63 ~~fl~FF~~~gH~~v~s~pvvpr-------------w~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDld 129 (902)
T TIGR03683 63 EAFLSFFEKHGHTRIKRYPVVAR-------------WRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLNDID 129 (902)
T ss_pred HHHHHHHHhCCCEEeCCcCcCcC-------------CCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccccccccc
Confidence 46778999999887765333221 01125666665555554432 4 3678888999998653
Q ss_pred ---CCccCcceeeee
Q psy8087 233 ---RTRRHLAEYTHV 244 (658)
Q Consensus 233 ---~~~rHl~EFt~l 244 (658)
.|.||+.=|.||
T Consensus 130 nVG~t~rH~TfFEMl 144 (902)
T TIGR03683 130 NVGRTGRHLTCFEMM 144 (902)
T ss_pred cccCCCCcchhhhhc
Confidence 257999888887
No 365
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=23.56 E-value=70 Score=37.65 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++..|.+.+|+.+...||.||.||
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP 295 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTP 295 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 4456789999999999999999999999
No 366
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=23.34 E-value=2.1e+02 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEE
Q psy8087 555 EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEV 594 (658)
Q Consensus 555 ~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~v 594 (658)
.+-..|+.|+.|.|.|.+.... .++.-..+-|++..++.
T Consensus 63 ~lt~~i~~Gs~i~v~GFla~~~-~~sg~~~lvlha~qi~~ 101 (103)
T COG2965 63 ELTQSITVGSYILVVGFLACHK-RRSGLSKLVLHAEQIEF 101 (103)
T ss_pred hhhhccccccEEEEEEEEEeec-ccCCccEEEEEeeEEEe
Confidence 3445699999999999997644 22333556777777664
No 367
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.25 E-value=3e+02 Score=27.34 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=47.6
Q ss_pred cEEEEEEEEEeeecCC--CceEEEEEEeCCEEEEEEEcCC-ccchHHhccCCCCcEEEEEEEEEe
Q psy8087 513 KRVTIFGWVHRLRRQG--KGLMFVTLRDGSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~G--kkl~Fi~Lrd~~~~iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
.+|-|.|-+..+-.-| ..+.=+.+.|++|.+=|+...- ......+..+...|.|.|+|++..
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGsF~Vyag~yqPEa~a~l~~ve~~~~VaViGKi~~ 110 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGSFYVYAGQYQPEAKAFLEDVEVPDLVAVIGKIRT 110 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCceEEEEcCCCChHHHHHHHhccCCceEEEecccce
Confidence 5788999999997776 4577789999999887755432 222356678999999999999854
No 368
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=23.22 E-value=73 Score=37.05 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|.+.+|+.+...||.||.||
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP 231 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTP 231 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 4466889999999999999999999999
No 369
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=22.80 E-value=3.8e+02 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=22.1
Q ss_pred EEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 101 IQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 101 iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+.|++-.+..+ .....|+.|+.|.|+|.++..
T Consensus 54 ~~Vv~fgk~AE-~v~~~LkKGs~V~VeGrL~~r 85 (168)
T PRK06863 54 HRIVFYRRQAE-VAGEYLRKGSQVYVEGRLKTR 85 (168)
T ss_pred EEEEEEhHHHH-HHHHHCCCCCEEEEEEEEEeC
Confidence 66666544211 223469999999999999865
No 370
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=22.69 E-value=3e+02 Score=21.58 Aligned_cols=50 Identities=16% Similarity=-0.074 Sum_probs=34.1
Q ss_pred EEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccchhhhhhcCCCccEEEEE
Q psy8087 74 NIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFR 127 (658)
Q Consensus 74 ~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~~~~~~~l~~es~V~v~ 127 (658)
.+.|+|..+...| ..+-+.+.-+.+ .+.+.++.+. .....|+.|+.|.+.
T Consensus 8 ~l~g~I~~i~~~g-~~~~v~l~~~~~~~l~a~i~~~~---~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGD-VNAEVDLLLGGGTKLTAVITLES---VAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEecHHH---HhhCCCCCCCEEEEE
Confidence 6889999987665 456677665555 6777776543 223467888888763
No 371
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.57 E-value=79 Score=35.35 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.++..++++++++.+.+.||.||.||
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P 198 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPP 198 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 3467789999999999999999999998
No 372
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=22.29 E-value=3.3e+02 Score=22.74 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=29.8
Q ss_pred EeEEeecceecCCCeEEEEEEcCCe--------EEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 75 IPAIPGPPAIPGKGLMFVTLRDGSG--------FIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 75 ~~Grv~~~r~~gk~l~Fi~LrD~~~--------~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
|.|-|......++.-.|. |+|..+ -|=|+... ...+..||.|.|+|++..
T Consensus 2 v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~-------~~~~~~Gd~V~vtG~v~e 59 (78)
T cd04486 2 VEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS-------GADVAVGDLVRVTGTVTE 59 (78)
T ss_pred eEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC-------CCCCCCCCEEEEEEEEEe
Confidence 567777766543112454 676521 12222221 135889999999999986
No 373
>PLN02530 histidine-tRNA ligase
Probab=22.29 E-value=73 Score=36.34 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 630 SRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 630 ~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
-.-.+.|..|.+.+|+.|...||.||+||
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP 109 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAP 109 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEecccc
Confidence 35577899999999999999999999999
No 374
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=22.14 E-value=4.4e+02 Score=24.39 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=47.9
Q ss_pred eeecccCCccCCcEEEEEEEEEeeec----CCC-ceEEEEEEeCCE---E-EEEEEcCCccchHHhccCCCCcEEEEEEE
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLRR----QGK-GLMFVTLRDGSG---F-IQCVLADILCQTEHALLLSTESSVQFRGR 571 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R~----~Gk-kl~Fi~Lrd~~~---~-iQvv~~~~~~~~~~~~~L~~gs~V~V~G~ 571 (658)
|+.|.+.....++.|.|-|=|..... .|+ -.+-+.|.|.+. . |.|.+-.... +.+-.+..||+|.+.+.
T Consensus 3 f~~i~~~~~~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~--~~LP~v~~GDVIll~~~ 80 (138)
T cd04497 3 YTPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE--ESLPIVKVGDIILLRRV 80 (138)
T ss_pred eEeHHHHHhccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh--hhCCCCCCCCEEEEEEE
Confidence 55666655567888888888877533 332 345568888866 2 6666554321 22334799999999997
Q ss_pred EEecC
Q psy8087 572 IEKVP 576 (658)
Q Consensus 572 v~~~~ 576 (658)
-...-
T Consensus 81 kv~~~ 85 (138)
T cd04497 81 KIQSY 85 (138)
T ss_pred EEEEE
Confidence 65544
No 375
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=21.71 E-value=3.4e+02 Score=26.66 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=35.6
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CCC--CCCceEEEEE---EEEEEecC
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GKS--APGGHELKVD---YWEVVGLA 598 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~~--~~g~~El~~~---~i~vls~~ 598 (658)
+.|++-.... ......|+.||.|.|+|.+....= .+. ....+||.+. .+++|.+.
T Consensus 56 ~~V~~fgk~A-e~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 56 HRVVLFGKLA-EVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEehhHH-HHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 5666654321 123456999999999999987542 111 1134788877 78888754
No 376
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.70 E-value=2.3e+02 Score=22.37 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=32.5
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc----hHHhccCCCCcEEEEE
Q psy8087 516 TIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ----TEHALLLSTESSVQFR 569 (658)
Q Consensus 516 ~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~----~~~~~~L~~gs~V~V~ 569 (658)
.+.|+|.++.+.| +|+.|-++ ++..+..+... ......++.|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~~V~l~~~---~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG---CIVSFYNN---VKGFLPKSELSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc---EEEEECCC---CEEEEEHHHcChhhcCCHHHcccCCCEEEEE
Confidence 3789999999887 68888543 66777643211 1122358899999887
No 377
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=21.63 E-value=82 Score=36.66 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-++++.+|.+.+|+.+.+.||.||.||
T Consensus 45 ~g~~~~~~i~~~i~~~~~~~G~~ei~~P 72 (565)
T PRK09194 45 LGLRVLRKIENIVREEMNKIGAQEVLMP 72 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECc
Confidence 3467899999999999999999999998
No 378
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=21.62 E-value=70 Score=39.41 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=47.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-c-----CCcEEEEeeeeecCCCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-A-----LGDVYCIAQSYRAENSR 233 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g-----~~rvfeI~~~FR~E~~~ 233 (658)
..+-+||.++|..-|..--+.+- ...+++|..|.-.-.|-... | ..|+-..-||.|..+++
T Consensus 66 ~~Fl~FF~~~gH~~v~s~pvvpr-------------w~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~nDld 132 (900)
T PRK13902 66 EKFLSFFEKHGHTRIERYPVVAR-------------WRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRLNDID 132 (900)
T ss_pred HHHHHHHHhCCCEEcCCcCcCCC-------------CCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccchhhhh
Confidence 46778999999887765333221 01125666666655554443 4 47888899999986532
Q ss_pred ----CccCcceeeee
Q psy8087 234 ----TRRHLAEYTHV 244 (658)
Q Consensus 234 ----~~rHl~EFt~l 244 (658)
|.||+.=|.||
T Consensus 133 nVG~t~rH~T~FEMl 147 (900)
T PRK13902 133 NVGRTGRHLTSFEMM 147 (900)
T ss_pred hccccCCchhhhhhc
Confidence 57999888887
No 379
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=21.04 E-value=2.7e+02 Score=32.69 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=53.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc--C------CCCccceee-ccCC-cceeeccC--HHHHHHHhcccC-----CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ--V------EGGSTLFSL-NFFG-EPAYLTQS--SQLYLETCLPAL-----GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~--~------eG~~~~F~~-~~~~-~~~~L~~S--pqlylk~li~g~-----~rvfe 222 (658)
..+|+.|...||.||-|-.|+... . +.+....++ |-.. ..-+||.| |.|-. .+.... -|+||
T Consensus 404 ~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~-~l~~N~~~~~p~klFE 482 (597)
T PLN02265 404 DLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLK-TLGHNKDAPKPIKLFE 482 (597)
T ss_pred HHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHH-HHHHhhcCCCCeeEEE
Confidence 478999999999999999997431 0 000011111 1111 11244444 22221 111122 37999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeec--CCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAF--LTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~--~d~~~~m~~~e~li~ 265 (658)
||.+|-.... ..+...|-++|=+-.+. +++.++-.+++.++.
T Consensus 483 iG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~ 526 (597)
T PLN02265 483 VSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIME 526 (597)
T ss_pred eEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHH
Confidence 9999954321 11111233444343333 378887777777774
No 380
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=20.45 E-value=4.6e+02 Score=25.36 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=21.6
Q ss_pred EEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 100 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 100 ~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+.|++-.+.. ..-...|+.|+.|.|+|.++..
T Consensus 44 wi~v~awg~~A-e~v~~yL~KG~~V~VeGrL~~~ 76 (161)
T PRK06293 44 WCRCNIWGNRY-DKMLPYLKKGSGVIVAGEMSPE 76 (161)
T ss_pred EEEEEEEhHHH-HHHHHhCCCCCEEEEEEEEEeC
Confidence 35665544321 1122469999999999999865
Done!