Query psy8087
Match_columns 658
No_of_seqs 545 out of 2973
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.4E-98 5E-103 827.3 27.1 379 68-447 28-450 (456)
2 2xgt_A Asparaginyl-tRNA synthe 100.0 7.8E-97 3E-101 811.7 29.9 380 68-447 9-429 (435)
3 3nem_A Aspartyl-tRNA synthetas 100.0 2.5E-95 9E-100 797.7 30.5 383 53-447 3-432 (438)
4 3bju_A Lysyl-tRNA synthetase; 100.0 1.7E-92 5.7E-97 790.5 27.9 394 46-445 25-503 (521)
5 4ex5_A Lysine--tRNA ligase; st 100.0 2.9E-92 9.9E-97 784.3 24.6 395 47-452 56-527 (529)
6 1e1o_A Lysyl-tRNA synthetase, 100.0 8.5E-91 2.9E-95 773.1 25.8 392 46-446 33-499 (504)
7 1wyd_A Hypothetical aspartyl-t 100.0 2.4E-90 8.1E-95 757.8 28.9 381 54-447 4-423 (429)
8 3i7f_A Aspartyl-tRNA synthetas 100.0 2E-90 6.8E-95 770.3 28.3 378 56-447 52-542 (548)
9 3a74_A Lysyl-tRNA synthetase; 100.0 5E-90 1.7E-94 765.9 25.4 391 46-446 25-489 (493)
10 1x54_A Asparaginyl-tRNA synthe 100.0 4.1E-89 1.4E-93 749.7 27.3 383 54-447 4-428 (434)
11 1n9w_A Aspartyl-tRNA synthetas 100.0 5.7E-89 1.9E-93 745.5 25.6 361 68-447 11-416 (422)
12 1eov_A ASPRS, aspartyl-tRNA sy 100.0 2E-87 6.8E-92 745.4 30.4 374 68-448 34-482 (487)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 5.9E-86 2E-90 745.3 32.6 372 54-451 4-555 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 1.3E-85 4.3E-90 744.8 27.9 372 54-450 3-560 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 5.4E-78 1.9E-82 678.6 22.9 373 52-453 10-574 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.1E-72 7.3E-77 599.2 23.7 263 160-447 44-343 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 1.1E-64 3.7E-69 530.8 21.1 263 148-447 3-287 (294)
18 3m4p_A Ehasnrs, asparaginyl-tR 100.0 7E-31 2.4E-35 289.0 18.0 164 494-658 12-181 (456)
19 3bju_A Lysyl-tRNA synthetase; 100.0 1.1E-29 3.7E-34 283.8 19.9 180 473-658 7-201 (521)
20 2xgt_A Asparaginyl-tRNA synthe 100.0 8.6E-30 2.9E-34 279.7 14.4 155 503-658 2-157 (435)
21 4ex5_A Lysine--tRNA ligase; st 100.0 3.4E-29 1.2E-33 278.4 16.3 180 471-658 36-229 (529)
22 1e1o_A Lysyl-tRNA synthetase, 100.0 7.4E-29 2.5E-33 275.8 18.0 179 471-658 14-208 (504)
23 1l0w_A Aspartyl-tRNA synthetas 100.0 2.3E-28 7.7E-33 276.1 19.1 150 508-658 12-169 (580)
24 3a74_A Lysyl-tRNA synthetase; 100.0 1.3E-28 4.5E-33 273.4 16.4 179 472-658 6-199 (493)
25 1c0a_A Aspartyl tRNA synthetas 100.0 3.7E-28 1.3E-32 275.1 18.1 148 508-658 11-163 (585)
26 3i7f_A Aspartyl-tRNA synthetas 100.0 5.6E-28 1.9E-32 269.1 18.5 160 497-658 46-269 (548)
27 3nem_A Aspartyl-tRNA synthetas 100.0 5.8E-28 2E-32 264.6 18.2 145 509-658 13-162 (438)
28 1wyd_A Hypothetical aspartyl-t 99.9 2.5E-27 8.6E-32 259.3 18.1 145 509-658 13-159 (429)
29 1eov_A ASPRS, aspartyl-tRNA sy 99.9 1.6E-27 5.6E-32 264.7 16.7 160 498-658 20-203 (487)
30 1n9w_A Aspartyl-tRNA synthetas 99.9 1.5E-26 5.2E-31 252.6 17.5 142 504-658 5-150 (422)
31 1x54_A Asparaginyl-tRNA synthe 99.9 1.3E-26 4.6E-31 254.1 15.6 144 509-658 13-160 (434)
32 4ah6_A Aspartate--tRNA ligase, 99.9 2E-25 6.8E-30 251.7 15.9 145 508-658 20-174 (617)
33 12as_A Asparagine synthetase; 99.9 6.5E-21 2.2E-25 194.9 20.0 267 160-444 13-316 (330)
34 3dsq_A Pyrrolysyl-tRNA synthet 99.7 3.2E-17 1.1E-21 170.6 12.1 179 160-443 78-275 (288)
35 3qtc_A Pyrrolysyl-tRNA synthet 99.7 1.6E-17 5.3E-22 173.5 7.0 121 141-265 54-204 (290)
36 1b7y_A Phers, protein (phenyla 99.4 2.4E-12 8.1E-17 136.9 18.9 107 160-267 108-244 (350)
37 2rhq_A Phenylalanyl-tRNA synth 99.3 6.5E-12 2.2E-16 131.1 13.7 106 160-267 60-183 (294)
38 3pco_A Phenylalanyl-tRNA synth 99.0 8.2E-10 2.8E-14 116.1 10.0 106 160-268 114-235 (327)
39 3l4g_A Phenylalanyl-tRNA synth 98.8 3.7E-08 1.3E-12 108.8 14.7 47 218-265 348-396 (508)
40 3qtc_A Pyrrolysyl-tRNA synthet 98.6 2.3E-09 7.8E-14 111.6 -3.9 85 570-658 12-101 (290)
41 3cmq_A Phenylalanyl-tRNA synth 98.0 6.3E-05 2.2E-09 81.7 14.5 89 160-250 55-164 (415)
42 2du3_A O-phosphoseryl-tRNA syn 97.8 8E-05 2.7E-09 82.7 10.9 48 218-265 206-255 (534)
43 2dq3_A Seryl-tRNA synthetase; 97.8 7.4E-05 2.5E-09 81.6 10.4 106 160-268 180-307 (425)
44 1evl_A Threonyl-tRNA synthetas 97.7 6.9E-05 2.4E-09 81.2 8.6 105 160-266 38-162 (401)
45 1hc7_A Prolyl-tRNA synthetase; 97.6 0.00018 6E-09 79.8 10.4 104 160-264 52-179 (477)
46 2i4l_A Proline-tRNA ligase; al 97.5 0.00027 9.2E-09 77.9 10.1 104 160-263 75-197 (458)
47 3uh0_A Threonyl-tRNA synthetas 97.4 0.00031 1.1E-08 77.4 9.7 109 160-269 72-203 (460)
48 2j3l_A Prolyl-tRNA synthetase; 97.4 0.0005 1.7E-08 77.9 10.5 102 160-263 55-177 (572)
49 2du7_A O-phosphoseryl-tRNA syn 97.3 0.0011 3.9E-08 73.5 12.7 65 200-265 193-267 (549)
50 1ses_A Seryl-tRNA synthetase; 97.3 0.00091 3.1E-08 72.8 11.8 106 160-267 174-302 (421)
51 1nyr_A Threonyl-tRNA synthetas 97.3 0.00035 1.2E-08 80.4 8.9 106 160-267 279-406 (645)
52 2dq0_A Seryl-tRNA synthetase; 97.3 0.00034 1.2E-08 76.9 8.1 103 160-267 201-327 (455)
53 3a5y_A GENX, putative lysyl-tR 97.3 9.3E-05 3.2E-09 78.5 3.5 35 623-658 27-61 (345)
54 1qe0_A Histidyl-tRNA synthetas 97.3 0.00018 6.2E-09 78.2 5.8 92 160-252 24-135 (420)
55 3qne_A Seryl-tRNA synthetase, 97.3 0.00045 1.5E-08 76.0 8.8 105 160-267 193-323 (485)
56 1nj1_A PROR, proline-tRNA synt 97.3 0.00054 1.8E-08 76.4 9.4 106 160-267 79-210 (501)
57 1z7m_A ATP phosphoribosyltrans 97.2 0.00086 3E-08 71.1 9.9 92 160-252 44-151 (344)
58 2odr_B Phosphoseryl-tRNA synth 97.2 0.0015 5.1E-08 73.3 11.5 66 200-266 200-275 (648)
59 2odr_A Phosphoseryl-tRNA synth 97.2 0.0016 5.3E-08 73.2 11.5 66 200-266 200-275 (665)
60 2odr_D Phosphoseryl-tRNA synth 97.2 0.0016 5.5E-08 73.2 11.5 66 200-266 200-275 (685)
61 2odr_C Phosphoseryl-tRNA synth 97.1 0.0017 5.9E-08 73.1 11.5 66 200-266 200-275 (701)
62 3ial_A Prolyl-tRNA synthetase; 97.1 0.00066 2.3E-08 75.6 8.2 108 160-267 63-194 (518)
63 4hvc_A Bifunctional glutamate/ 97.1 0.00093 3.2E-08 74.5 9.1 107 160-267 69-200 (519)
64 1wu7_A Histidyl-tRNA synthetas 97.1 0.0016 5.5E-08 71.1 10.7 92 160-252 28-133 (434)
65 3lss_A Seryl-tRNA synthetase; 97.1 0.0007 2.4E-08 74.5 7.6 105 160-267 216-346 (484)
66 1nj8_A Proline-tRNA synthetase 97.1 0.0013 4.4E-08 72.5 9.7 105 160-265 46-176 (459)
67 2cja_A Seryl-tRNA synthetase; 97.1 0.00049 1.7E-08 76.6 6.0 110 160-271 239-400 (522)
68 1wle_A Seryl-tRNA synthetase; 97.1 0.0026 9.1E-08 70.5 11.8 106 160-267 227-358 (501)
69 3vbb_A Seryl-tRNA synthetase, 97.1 0.0021 7.1E-08 71.3 10.9 106 160-267 209-348 (522)
70 1qf6_A THRRS, threonyl-tRNA sy 97.0 0.0013 4.4E-08 75.5 9.1 105 160-266 279-403 (642)
71 3net_A Histidyl-tRNA synthetas 97.0 0.0011 3.8E-08 73.1 8.0 91 160-251 34-153 (465)
72 4e51_A Histidine--tRNA ligase; 96.9 0.0018 6E-08 71.6 9.1 92 160-252 54-164 (467)
73 3od1_A ATP phosphoribosyltrans 96.9 0.0024 8.2E-08 69.1 9.9 92 160-252 32-137 (400)
74 1h4v_B Histidyl-tRNA synthetas 96.9 0.0023 7.7E-08 69.5 9.4 93 160-253 25-136 (421)
75 3rac_A Histidine-tRNA ligase; 96.9 0.0021 7.2E-08 68.9 8.9 92 160-252 45-157 (373)
76 3a32_A Probable threonyl-tRNA 96.8 0.0024 8.4E-08 70.5 8.9 105 160-265 57-183 (471)
77 3err_A Fusion protein of micro 96.8 0.0032 1.1E-07 70.4 9.7 105 160-267 283-411 (536)
78 1htt_A Histidyl-tRNA synthetas 96.7 0.0038 1.3E-07 67.8 9.6 93 160-253 26-136 (423)
79 1usy_A ATP phosphoribosyltrans 96.6 0.0052 1.8E-07 63.0 9.2 86 161-252 9-101 (275)
80 2k50_A Replication factor A re 96.6 0.014 4.7E-07 51.5 10.5 90 502-599 8-106 (115)
81 3lc0_A Histidyl-tRNA synthetas 96.5 0.0058 2E-07 67.2 9.4 92 160-252 51-157 (456)
82 1ati_A Glycyl-tRNA synthetase; 96.5 0.0072 2.5E-07 67.3 9.6 48 218-268 210-261 (505)
83 3dm3_A Replication factor A; p 96.1 0.14 4.7E-06 44.6 13.8 88 501-599 5-101 (105)
84 4g84_A Histidine--tRNA ligase, 95.9 0.027 9.3E-07 61.7 10.6 90 160-251 36-139 (464)
85 3kf6_A Protein STN1; OB fold, 95.7 0.089 3E-06 49.3 11.6 78 513-597 48-128 (159)
86 3e0e_A Replication protein A; 95.6 0.18 6.3E-06 43.0 12.6 84 503-598 4-96 (97)
87 4g85_A Histidine-tRNA ligase, 95.5 0.031 1.1E-06 62.3 9.2 90 160-251 89-192 (517)
88 2kqr_A Asparaginyl-tRNA synthe 95.5 0.00013 4.5E-09 64.2 -7.9 54 445-498 56-112 (113)
89 3kdf_D Replication protein A 3 95.4 0.11 3.6E-06 47.1 10.9 78 513-597 32-111 (132)
90 3mf2_A BLL0957 protein; aminoa 95.4 0.023 7.9E-07 59.6 7.0 108 160-269 72-219 (346)
91 3ikl_A DNA polymerase subunit 95.3 0.049 1.7E-06 59.5 9.6 91 169-267 122-227 (459)
92 4gop_B Putative uncharacterize 95.1 0.16 5.5E-06 46.1 11.1 79 512-597 36-116 (136)
93 1nnx_A Protein YGIW; structura 95.0 0.16 5.5E-06 44.4 10.3 74 509-596 34-108 (109)
94 2k50_A Replication factor A re 94.6 0.17 5.8E-06 44.4 9.5 62 69-132 15-85 (115)
95 3au7_A TIAS, putative uncharac 94.4 0.33 1.1E-05 51.9 12.7 79 510-598 282-362 (402)
96 1ynx_A Replication factor-A pr 93.4 0.24 8.1E-06 43.6 8.0 96 501-599 4-110 (114)
97 3kdf_D Replication protein A 3 93.3 0.22 7.6E-06 44.9 7.8 65 69-134 30-96 (132)
98 1g5h_A Mitochondrial DNA polym 92.8 0.18 6.3E-06 55.2 7.7 104 161-267 71-217 (454)
99 4gop_B Putative uncharacterize 92.5 0.44 1.5E-05 43.2 8.7 64 69-133 35-100 (136)
100 2pi2_A Replication protein A 3 92.3 0.71 2.4E-05 46.9 10.9 79 513-598 72-152 (270)
101 3l4g_B Phenylalanyl-tRNA synth 92.2 0.44 1.5E-05 53.9 10.1 105 160-265 398-520 (589)
102 3kdf_A Replication protein A 1 92.2 0.96 3.3E-05 40.3 10.2 75 505-597 15-89 (121)
103 1o7i_A SSB, SSO2364, single st 92.0 1.4 4.7E-05 38.9 11.0 84 503-598 4-96 (119)
104 2rhq_B Phenylalanyl-tRNA synth 91.5 0.63 2.1E-05 54.5 10.5 106 160-267 500-632 (795)
105 3ig2_A Phenylalanyl-tRNA synth 91.4 0.58 2E-05 45.7 8.8 108 160-267 11-151 (213)
106 2kbn_A Conserved protein; nucl 90.2 2.4 8.1E-05 36.8 10.6 86 502-598 6-94 (109)
107 1nnx_A Protein YGIW; structura 89.5 0.68 2.3E-05 40.4 6.4 58 68-132 35-92 (109)
108 3ica_A Phenylalanyl-tRNA synth 88.6 1.6 5.5E-05 42.5 9.3 108 160-267 11-151 (213)
109 3kf8_A Protein STN1; OB fold; 88.6 2 6.8E-05 42.1 9.7 87 512-598 85-185 (220)
110 3e0e_A Replication protein A; 88.2 1.9 6.5E-05 36.6 8.4 69 69-142 10-87 (97)
111 3dm3_A Replication factor A; p 87.1 3.9 0.00013 35.2 9.8 70 70-143 14-92 (105)
112 1txy_A Primosomal replication 87.0 6 0.00021 33.8 10.9 53 543-597 50-102 (104)
113 3kf6_A Protein STN1; OB fold, 85.9 2.3 8E-05 39.6 8.2 65 68-133 45-112 (159)
114 2pi2_E Replication protein A 1 85.4 5.5 0.00019 36.3 10.3 77 502-597 33-110 (142)
115 1jmc_A Protein (replication pr 85.2 2.3 7.9E-05 42.1 8.4 98 499-599 6-114 (246)
116 2hpi_A DNA polymerase III alph 84.3 1.3 4.4E-05 53.9 7.1 80 510-597 1040-1123(1220)
117 3fhw_A Primosomal replication 82.4 16 0.00056 31.9 11.7 52 543-599 49-100 (115)
118 1sr3_A APO-CCME; OB fold, beta 81.8 6.2 0.00021 35.7 8.9 76 509-601 25-104 (136)
119 2pi2_A Replication protein A 3 81.5 3.1 0.00011 42.0 7.7 63 71-134 72-136 (270)
120 1b7y_B Phers, protein (phenyla 81.5 3.9 0.00013 47.7 9.4 99 160-267 496-620 (785)
121 1j6q_A Cytochrome C maturation 81.1 8 0.00027 35.0 9.3 75 509-600 29-108 (136)
122 2kct_A Cytochrome C-type bioge 81.1 15 0.00053 30.9 10.5 75 510-600 6-87 (94)
123 3au7_A TIAS, putative uncharac 79.8 7 0.00024 41.7 9.9 65 68-132 282-348 (402)
124 3net_A Histidyl-tRNA synthetas 79.4 0.88 3E-05 49.8 3.0 48 366-435 310-361 (465)
125 3tqy_A Single-stranded DNA-bin 78.6 11 0.00037 34.9 9.8 84 514-598 10-115 (158)
126 2k75_A Uncharacterized protein 78.4 13 0.00043 31.9 9.5 82 502-598 4-93 (106)
127 3k8a_A Putative primosomal rep 76.7 23 0.00078 30.3 10.6 47 543-595 55-101 (103)
128 3kdf_A Replication protein A 1 76.5 6.3 0.00021 34.9 7.1 56 68-132 20-75 (121)
129 4gop_A Putative uncharacterize 76.4 13 0.00044 32.5 9.0 56 506-573 12-68 (114)
130 2hpi_A DNA polymerase III alph 76.2 2.9 0.0001 50.8 6.4 66 68-134 1040-1109(1220)
131 2vw9_A Single-stranded DNA bin 75.5 10 0.00034 34.1 8.4 56 542-598 50-108 (134)
132 2zt5_A Glycyl-tRNA synthetase; 73.8 1.8 6.1E-05 49.8 3.6 30 218-249 267-300 (693)
133 3vdy_A SSB, single-stranded DN 73.5 14 0.00047 32.1 8.6 84 514-598 7-109 (116)
134 3od1_A ATP phosphoribosyltrans 73.0 3.2 0.00011 44.5 5.1 48 366-435 282-330 (400)
135 3ull_A DNA binding protein; DN 71.8 29 0.00099 30.8 10.5 55 543-598 69-127 (132)
136 3f2b_A DNA-directed DNA polyme 71.7 22 0.00077 42.5 12.3 82 512-597 17-103 (1041)
137 1sr3_A APO-CCME; OB fold, beta 70.8 25 0.00086 31.7 9.7 59 68-132 26-88 (136)
138 2b29_A Replication protein A 7 69.6 24 0.00084 31.1 9.3 61 534-598 47-108 (123)
139 3ulp_A Single-strand binding p 69.5 24 0.00081 31.0 9.2 84 514-598 8-120 (124)
140 1o7i_A SSB, SSO2364, single st 69.2 21 0.00073 31.0 8.8 56 72-132 14-78 (119)
141 1j6q_A Cytochrome C maturation 66.4 28 0.00096 31.4 9.0 59 68-132 30-93 (136)
142 1ynx_A Replication factor-A pr 65.8 6.3 0.00021 34.3 4.6 60 72-133 16-85 (114)
143 4gop_C Putative uncharacterize 65.7 5.3 0.00018 43.2 5.0 94 502-598 4-108 (444)
144 1wjj_A Hypothetical protein F2 64.8 48 0.0016 30.1 10.4 92 496-598 11-120 (145)
145 2kbn_A Conserved protein; nucl 64.8 30 0.001 29.7 8.7 59 70-132 15-76 (109)
146 1z9f_A Single-strand binding p 61.9 40 0.0014 30.8 9.5 84 514-598 18-122 (153)
147 2pi2_E Replication protein A 1 61.9 18 0.00062 32.9 6.9 56 68-132 41-96 (142)
148 3lgj_A Single-stranded DNA-bin 61.1 54 0.0018 30.5 10.3 84 514-598 25-135 (169)
149 4gs3_A Single-stranded DNA-bin 60.5 58 0.002 28.0 9.6 81 513-596 12-106 (107)
150 1qvc_A Single stranded DNA bin 59.8 35 0.0012 30.9 8.6 84 514-598 7-115 (145)
151 1gm5_A RECG; helicase, replica 59.6 5.1 0.00017 46.8 3.6 63 68-133 163-230 (780)
152 1se8_A Single-strand binding p 59.6 38 0.0013 34.6 9.9 82 514-597 131-233 (301)
153 2fxq_A Single-strand binding p 59.5 19 0.00065 36.0 7.4 83 514-598 130-230 (264)
154 4gop_A Putative uncharacterize 58.6 22 0.00075 31.0 6.7 54 68-133 16-70 (114)
155 3pgz_A Single-stranded DNA-bin 56.2 48 0.0016 31.7 9.1 84 514-598 28-138 (193)
156 1v1q_A Primosomal replication 56.1 38 0.0013 30.4 8.0 54 542-597 66-119 (134)
157 2fxq_A Single-strand binding p 55.0 60 0.002 32.3 10.3 56 542-598 53-110 (264)
158 2kct_A Cytochrome C-type bioge 52.8 71 0.0024 26.8 8.6 59 68-132 6-71 (94)
159 3mxn_B RECQ-mediated genome in 52.1 1E+02 0.0035 28.0 10.0 74 512-598 58-131 (150)
160 2k75_A Uncharacterized protein 47.8 86 0.0029 26.6 8.7 53 72-132 15-75 (106)
161 3kf8_A Protein STN1; OB fold; 47.6 38 0.0013 33.0 7.0 65 69-133 84-160 (220)
162 3eiv_A Single-stranded DNA-bin 43.3 2.1E+02 0.0071 27.3 11.4 53 541-594 53-108 (199)
163 1h4v_B Histidyl-tRNA synthetas 41.5 16 0.00056 38.8 3.7 19 417-435 301-319 (421)
164 3hy0_A Alanyl-tRNA synthetase; 41.3 15 0.00051 39.5 3.3 39 417-457 232-270 (441)
165 1se8_A Single-strand binding p 41.3 1E+02 0.0035 31.3 9.6 84 514-598 7-112 (301)
166 2i4l_A Proline-tRNA ligase; al 40.0 16 0.00055 39.6 3.4 29 630-658 64-92 (458)
167 1j5w_A Glycyl-tRNA synthetase 39.9 12 0.00041 37.3 2.1 57 362-443 134-191 (298)
168 2rhq_A Phenylalanyl-tRNA synth 39.8 15 0.00053 37.3 3.0 23 636-658 55-77 (294)
169 4dka_C RNA-editing complex pro 39.4 1.4E+02 0.0048 25.5 8.3 65 512-576 3-77 (105)
170 1htt_A Histidyl-tRNA synthetas 39.3 18 0.00062 38.5 3.7 19 417-435 300-318 (423)
171 3en2_A Probable primosomal rep 39.0 73 0.0025 27.0 6.7 47 542-593 49-95 (101)
172 1z7m_A ATP phosphoribosyltrans 37.6 19 0.00064 37.5 3.3 27 632-658 35-61 (344)
173 3rf1_A Glycyl-tRNA synthetase 37.6 13 0.00045 37.2 2.0 59 361-444 145-204 (311)
174 3f1z_A Putative nucleic acid-b 37.1 77 0.0026 26.4 6.2 69 508-576 45-119 (133)
175 1txy_A Primosomal replication 36.8 1.5E+02 0.0052 24.8 8.5 32 101-133 50-81 (104)
176 3pco_B Phenylalanyl-tRNA synth 36.5 76 0.0026 36.9 8.5 105 160-265 496-626 (795)
177 3lss_A Seryl-tRNA synthetase; 36.3 23 0.00078 38.8 3.8 28 631-658 206-233 (484)
178 2zze_A Alanyl-tRNA synthetase; 36.2 15 0.0005 42.5 2.4 27 417-444 245-271 (752)
179 3rac_A Histidine-tRNA ligase; 35.7 21 0.00071 37.7 3.3 26 633-658 37-62 (373)
180 1jmc_A Protein (replication pr 35.6 37 0.0013 33.1 5.0 57 72-130 20-85 (246)
181 2k52_A Uncharacterized protein 35.3 79 0.0027 25.1 6.1 51 511-569 5-55 (80)
182 4g84_A Histidine--tRNA ligase, 34.6 16 0.00054 39.4 2.2 18 416-433 335-352 (464)
183 2dq3_A Seryl-tRNA synthetase; 34.2 24 0.00083 37.9 3.6 28 631-658 170-197 (425)
184 3vbb_A Seryl-tRNA synthetase, 34.1 24 0.00083 39.0 3.6 28 631-658 199-226 (522)
185 4e51_A Histidine--tRNA ligase; 33.5 24 0.00081 38.4 3.4 28 631-658 44-71 (467)
186 1yfs_A Alanyl-tRNA synthetase; 33.2 22 0.00074 38.5 2.9 91 160-264 10-115 (465)
187 1wjj_A Hypothetical protein F2 33.1 2.7E+02 0.0093 25.0 10.4 48 88-140 62-109 (145)
188 4g85_A Histidine-tRNA ligase, 32.7 20 0.00068 39.4 2.7 28 631-658 79-106 (517)
189 3afp_A Single-stranded DNA-bin 32.3 2E+02 0.0069 26.4 9.2 51 541-592 53-106 (168)
190 3dsq_A Pyrrolysyl-tRNA synthet 32.1 23 0.00079 35.9 2.9 23 636-658 73-95 (288)
191 2ztg_A Alanyl-tRNA synthetase; 31.7 17 0.00059 41.8 2.0 28 417-444 239-266 (739)
192 3lc0_A Histidyl-tRNA synthetas 30.6 28 0.00095 37.8 3.3 26 633-658 43-68 (456)
193 3err_A Fusion protein of micro 30.5 30 0.001 38.4 3.6 28 631-658 273-300 (536)
194 3qne_A Seryl-tRNA synthetase, 30.2 33 0.0011 37.5 3.8 28 631-658 183-210 (485)
195 1ses_A Seryl-tRNA synthetase; 29.5 32 0.0011 36.9 3.6 27 632-658 165-191 (421)
196 1wle_A Seryl-tRNA synthetase; 29.0 33 0.0011 37.7 3.6 28 631-658 217-244 (501)
197 4gop_C Putative uncharacterize 28.9 43 0.0015 36.0 4.5 58 72-131 15-81 (444)
198 3fyf_A Protein BVU-3222; struc 28.8 59 0.002 30.4 4.7 59 518-585 59-119 (176)
199 1qf6_A THRRS, threonyl-tRNA sy 28.7 30 0.001 39.2 3.3 28 631-658 269-296 (642)
200 1wu7_A Histidyl-tRNA synthetas 28.7 27 0.00092 37.4 2.8 19 417-435 306-324 (434)
201 2j3l_A Prolyl-tRNA synthetase; 28.6 33 0.0011 38.1 3.7 28 631-658 45-72 (572)
202 1nyr_A Threonyl-tRNA synthetas 28.5 31 0.001 39.1 3.4 28 631-658 269-296 (645)
203 1b7y_A Phers, protein (phenyla 28.4 29 0.00098 36.3 2.9 23 636-658 103-125 (350)
204 3tqy_A Single-stranded DNA-bin 27.2 2E+02 0.0067 26.2 8.1 61 72-133 10-89 (158)
205 1qvc_A Single stranded DNA bin 26.7 2.4E+02 0.0082 25.2 8.5 60 72-132 7-85 (145)
206 3uh0_A Threonyl-tRNA synthetas 26.0 40 0.0014 36.6 3.6 28 631-658 62-90 (460)
207 2vw9_A Single-stranded DNA bin 25.7 1.4E+02 0.0047 26.4 6.6 32 100-132 50-81 (134)
208 1qe0_A Histidyl-tRNA synthetas 25.2 25 0.00085 37.3 1.7 17 417-433 302-318 (420)
209 2dq0_A Seryl-tRNA synthetase; 25.2 43 0.0015 36.3 3.6 35 620-658 184-218 (455)
210 3a32_A Probable threonyl-tRNA 24.9 40 0.0014 36.6 3.3 28 631-658 47-74 (471)
211 3lgj_A Single-stranded DNA-bin 24.9 2.1E+02 0.007 26.5 7.8 62 71-133 24-105 (169)
212 3ulp_A Single-strand binding p 23.8 2.1E+02 0.0073 24.6 7.4 60 72-132 8-87 (124)
213 3eiv_A Single-stranded DNA-bin 23.2 3.1E+02 0.011 26.1 8.8 51 100-154 54-112 (199)
214 3koj_A Uncharacterized protein 22.9 3.5E+02 0.012 23.0 11.1 80 513-593 12-107 (108)
215 1ati_A Glycyl-tRNA synthetase; 22.8 53 0.0018 36.0 3.8 27 632-658 38-66 (505)
216 4dka_C RNA-editing complex pro 21.9 3.5E+02 0.012 23.0 7.7 66 69-134 2-77 (105)
217 1hc7_A Prolyl-tRNA synthetase; 21.5 52 0.0018 35.8 3.4 28 631-658 42-69 (477)
218 2k4k_A GSP13, general stress p 20.7 1.6E+02 0.0054 25.8 5.9 51 511-569 7-61 (130)
219 3koj_A Uncharacterized protein 20.5 3.9E+02 0.013 22.6 8.6 62 71-133 12-86 (108)
220 3pgz_A Single-stranded DNA-bin 20.5 2.3E+02 0.008 26.8 7.3 62 72-133 28-108 (193)
221 4gs3_A Single-stranded DNA-bin 20.2 3.6E+02 0.012 22.9 7.8 58 72-132 13-80 (107)
No 1
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.4e-98 Score=827.27 Aligned_cols=379 Identities=50% Similarity=0.881 Sum_probs=337.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhhhhcCCCccEEEEEEEeEeCCC----------C
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPE----------E 136 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~~~~l~~es~V~v~G~l~~~p~----------~ 136 (658)
..|++|+|+|||+++|.+||+++|++|||++|.||||++++.. ..+....|+.||+|.|+|.|..+|. +
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g 107 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADIL 107 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBC
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCC
Confidence 5789999999999999999899999999999999999987432 2334457999999999999998775 4
Q ss_pred ccceEecC-----------C-------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCcccccc
Q psy8087 137 NMKVQLIH-----------P-------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQ 183 (658)
Q Consensus 137 ~~d~~l~~-----------p-------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~ 183 (658)
.+|+.++. | ++||||||++..++ ++||+||.++||+||+||+|++++
T Consensus 108 ~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~ 187 (456)
T 3m4p_A 108 NLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQ 187 (456)
T ss_dssp SSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--
T ss_pred cEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCC
Confidence 43333211 0 24999999876544 699999999999999999999889
Q ss_pred CCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 184 VEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 184 ~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
+|||+++|+++|||+++||+||||||||+|++|++||||||||||||+++++|||||||||||||+|+|++|+|+++|+|
T Consensus 188 ~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~l 267 (456)
T 3m4p_A 188 CEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDL 267 (456)
T ss_dssp ----CCCCEEEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred CCCccccccccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEE
Q psy8087 264 ICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343 (658)
Q Consensus 264 i~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~ 343 (658)
|+++++.+.+++...++.+++++..++.||+||||.||++++++.|++.++ ..+.||++++.++|+++++.+++|+||+
T Consensus 268 i~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~-~~~~~g~~l~~~~e~~l~~~~~~P~fv~ 346 (456)
T 3m4p_A 268 VCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD-KPFEYGEDISEKPERQMTDEIGCPIFMI 346 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS-SCCCTTCCCCHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc-cCcchHHHHHHHHHHHHHHHhCceEEEE
Confidence 999999998877666666666665566899999999999999999986543 3467999999999999999999999999
Q ss_pred eCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceec
Q psy8087 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGL 423 (658)
Q Consensus 344 ~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~Gi 423 (658)
|||.+++||||+++++||++++|||||++|+|||+|||+|+|||++|++||++.|+++++++|||++++|||||||||||
T Consensus 347 ~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~Gl 426 (456)
T 3m4p_A 347 HFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGL 426 (456)
T ss_dssp CCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEE
T ss_pred CCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccCcchhhHHHHH
Q psy8087 424 GLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 424 GidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||||+|++||.+||||||+||..
T Consensus 427 GidRLvm~ltg~~~Irdvi~FPr~ 450 (456)
T 3m4p_A 427 GVERLVMWLLGEDHIRKVCLYPRY 450 (456)
T ss_dssp EHHHHHHHHHTCSCGGGGSSSCBB
T ss_pred cHHHHHHHHcCCccHHHeeccCCC
Confidence 999999999999999999999853
No 2
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=7.8e-97 Score=811.74 Aligned_cols=380 Identities=54% Similarity=0.946 Sum_probs=337.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC-----CccceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-----ENMKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~-----~~~d~~l 142 (658)
..|++|+|+|||+++|.+||+++|++|||++|.||||++++..+.++...++.||+|.|+|.|.++|. +.+|+.+
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~ 88 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIA 88 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEE
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEE
Confidence 56889999999999999998899999999999999999854333344447999999999999998763 2222221
Q ss_pred c--------CC-----------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCc
Q psy8087 143 I--------HP-----------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGS 188 (658)
Q Consensus 143 ~--------~p-----------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~ 188 (658)
+ .| ++||||||++..++ ++||+||.++||+||+||+|+++++|||+
T Consensus 89 ~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~ 168 (435)
T 2xgt_A 89 DFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGS 168 (435)
T ss_dssp EEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTT
T ss_pred EEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCch
Confidence 1 00 25899998775544 69999999999999999999988999999
Q ss_pred cceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 189 TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 189 ~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
++|+++|||+++||+||||||||++++|++||||||||||||+++++|||||||||||||+|+|++|+|+++|+||++++
T Consensus 169 ~~F~~~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~ 248 (435)
T 2xgt_A 169 TLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTV 248 (435)
T ss_dssp SCCEEEETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred hceeeccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccc--cccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCC
Q psy8087 269 DRVMATHGD--LVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346 (658)
Q Consensus 269 ~~~~~~~~~--~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P 346 (658)
+.+.+.+.. .++.+++++..++.||+||||.||++++++.|+..+......||+++.+.+|+++++.+.+|+||+|||
T Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fv~d~P 328 (435)
T 2xgt_A 249 DRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFP 328 (435)
T ss_dssp HHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHHTSCEEEECCB
T ss_pred HHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhcCCcEEEECCC
Confidence 999876432 234445555444579999999999999988887655444567899999999999999999999999999
Q ss_pred CCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchh
Q psy8087 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 347 ~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
.+++||||+.+++||++++|||||++|+|||+|||+|+|||++|++||++.|+++++++|||+|++||+|||||||||+|
T Consensus 329 ~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiD 408 (435)
T 2xgt_A 329 SEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408 (435)
T ss_dssp GGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHH
T ss_pred hhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHH
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k 447 (658)
||+|+|||.+||||||+||..
T Consensus 409 RLvmll~g~~~Irdvi~FPr~ 429 (435)
T 2xgt_A 409 RFICWLTNTNHIRDVCLYPRF 429 (435)
T ss_dssp HHHHHHHTCSCGGGGSSSCCB
T ss_pred HHHHHHcCCCcHHhEecccCC
Confidence 999999999999999999854
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.5e-95 Score=797.65 Aligned_cols=383 Identities=26% Similarity=0.424 Sum_probs=340.8
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-hhcCCCccEEEEEEE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-ALLLSTESSVQFRGR 129 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~~~l~~es~V~v~G~ 129 (658)
+++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. ...|+.||+|.|+|.
T Consensus 3 rt~~~~~l~~~----~~g~~V~v~Gwv~~~R~~g~-~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~ 77 (438)
T 3nem_A 3 RTHYSSEITEE----LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGV 77 (438)
T ss_dssp CSCCGGGCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEE
T ss_pred eEEEHHHcchh----cCCCEEEEEEEEEEEecCCC-eEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEE
Confidence 45667888554 57899999999999999985 99999999999999999976532 232 357999999999999
Q ss_pred eEeCCC--CccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcE
Q psy8087 130 IEKVPE--ENMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIA 172 (658)
Q Consensus 130 l~~~p~--~~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~ 172 (658)
|.+++. +.+++.++. | ++||||||++..++ ++||+||.++||+
T Consensus 78 v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~ 157 (438)
T 3nem_A 78 VNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI 157 (438)
T ss_dssp EEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 999886 433332210 1 24999999876544 6999999999999
Q ss_pred EEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 173 KVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 173 EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
||+||+|+++++|||++.|+++|||+++||+||||||||+|++ |++||||||||||||+++++||||||||||+||+|+
T Consensus 158 EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~ 237 (438)
T 3nem_A 158 EIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI 237 (438)
T ss_dssp ECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred EEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccC
Confidence 9999999988999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhh
Q psy8087 252 T-FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER 330 (658)
Q Consensus 252 d-~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~ 330 (658)
| ++|+|+++|+||+++++.+.+.+...+..++.++..++.||+||||.||++++++.|++ ..||.+++..+|+
T Consensus 238 ~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g~~------~~~~~dl~~~~e~ 311 (438)
T 3nem_A 238 EDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKE------IPWGEDIDTEGER 311 (438)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCC------CCTTSCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcCCC------CCCCCCCCcHHHH
Confidence 8 99999999999999999998877555555666654456799999999999999888864 3578899999999
Q ss_pred hhhccc-----CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCc
Q psy8087 331 KMTDQI-----NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405 (658)
Q Consensus 331 ~l~~~~-----~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~ 405 (658)
+|.+.+ .+|+||+|||.+++||||+.+++||++++|||||++| +||+|||+|+|||++|++||+++|++++.|+
T Consensus 312 ~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~ 390 (438)
T 3nem_A 312 LLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFE 390 (438)
T ss_dssp HHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHH
Confidence 988876 7899999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred chHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 406 ~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||+|++||||||||||||||||+|++||.+||||||+||..
T Consensus 391 ~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~ 432 (438)
T 3nem_A 391 FYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRD 432 (438)
T ss_dssp HHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCC
T ss_pred HHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCC
Confidence 999999999999999999999999999999999999999853
No 4
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-92 Score=790.46 Aligned_cols=394 Identities=16% Similarity=0.232 Sum_probs=325.9
Q ss_pred CCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hhhh--
Q psy8087 46 LPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QTEH-- 114 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~~~-- 114 (658)
.|||. |+.++++.++.+.. ++...+++|+|+|||+++|.+||+++|++|||++|.||||++++.. +.+.
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~ 104 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHI 104 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHH
Confidence 35654 66677777764311 1223478899999999999999779999999999999999987643 2333
Q ss_pred hhcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------C
Q psy8087 115 ALLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------G 160 (658)
Q Consensus 115 ~~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~ 160 (658)
...++.||+|.|+|.|.+++.+.+++.++. | ++||||||++...+ +
T Consensus 105 ~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~ 184 (521)
T 3bju_A 105 NNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIIT 184 (521)
T ss_dssp HHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHH
Confidence 246999999999999999988764433221 1 24899999544322 6
Q ss_pred chHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+||+||.++||+||+||+|++ .++|| +++|. +++||+++||+||||||||+|++ |++||||||||||||++++ |
T Consensus 185 ~iR~f~~~~gF~EVeTPiL~~-~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~t-r 262 (521)
T 3bju_A 185 YIRSFLDELGFLEIETPMMNI-IPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-T 262 (521)
T ss_dssp HHHHHHHHTTCEECCCCSEES-SCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBT-T
T ss_pred HHHHHHHHCCCEEEeCceeec-cCCCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCC-c
Confidence 999999999999999999975 45555 68994 48999999999999999999887 7999999999999999988 9
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC----CCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF----EPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~----~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
|||||||||+||||+||+|+|+++|+||+++++.+.+++...+...+++. ..++.||+|+||.||++.+. |++.
T Consensus 263 H~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~--g~~~ 340 (521)
T 3bju_A 263 HNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKAL--GMKL 340 (521)
T ss_dssp BCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHH--TSCC
T ss_pred cchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHh--CCCC
Confidence 99999999999999999999999999999999999887643332222211 01347999999999999864 4443
Q ss_pred CC---C---------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEE
Q psy8087 313 PD---N---------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVD 368 (658)
Q Consensus 313 ~~---~---------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fd 368 (658)
+. . ...+||..++.++++++++.+.+|+||+|||.+++|| ++++++||++++|||
T Consensus 341 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~~P~fI~dyP~~~spl-a~~~~~dp~~~~rfd 419 (521)
T 3bju_A 341 PETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPL-AKWHRSKEGLTERFE 419 (521)
T ss_dssp CCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSSTTBBSEEE
T ss_pred CccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEECCccccCcc-cccCCCCCCeeeeEE
Confidence 21 0 1234555666788999999999999999999999999 788889999999999
Q ss_pred EEeCCcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 369 VLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 369 L~~~G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
||++|. ||||||+|+|||.+|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||.+||||
T Consensus 420 L~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRd 498 (521)
T 3bju_A 420 LFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKE 498 (521)
T ss_dssp EEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGG
T ss_pred EEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHh
Confidence 999995 9999999999999999999876 777765 7999999999999999999999999999999999999
Q ss_pred hhHHH
Q psy8087 441 KYQLI 445 (658)
Q Consensus 441 vi~f~ 445 (658)
||+||
T Consensus 499 Vi~FP 503 (521)
T 3bju_A 499 VLLFP 503 (521)
T ss_dssp SCSSC
T ss_pred EecCC
Confidence 99995
No 5
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=2.9e-92 Score=784.30 Aligned_cols=395 Identities=20% Similarity=0.295 Sum_probs=325.4
Q ss_pred CCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-hh
Q psy8087 47 PFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-AL 116 (658)
Q Consensus 47 ~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~~ 116 (658)
|||. |.++++++++....... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. ..
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk-~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~ 134 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGK-ASFATVQDGSGQIQFFVTPADVGAETYDAFK 134 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEECSSCEEEEEECHHHHCHHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCC-eEEEEEEeCCeeEEEEEECCcCCHHHHHHHh
Confidence 7887 77888888886543211 12788999999999999985 99999999999999999875432 232 24
Q ss_pred cCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cch
Q psy8087 117 LLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GYP 162 (658)
Q Consensus 117 ~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~i 162 (658)
.++.||+|.|+|.|.+++.+.+++.++. | ++||||||++...+ ++|
T Consensus 135 ~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~i 214 (529)
T 4ex5_A 135 KWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASI 214 (529)
T ss_dssp TCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998764433221 1 14899998553322 699
Q ss_pred HHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCc
Q psy8087 163 PEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 163 R~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl 238 (658)
|+||.++||+||+||+|+ ++++|| +++| ++++|++++||+||||||||+|++ |++||||||||||||++++ |||
T Consensus 215 R~ff~~~gFlEVeTPiL~-~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~-rH~ 292 (529)
T 4ex5_A 215 RKFMGDADFMEVETPMLH-PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSP-RHN 292 (529)
T ss_dssp HHHHHHTTCEECCCCSEE-SSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBT-TBC
T ss_pred HHHHHHCCCEEEeCCeee-ccCCCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCC-Ccc
Confidence 999999999999999997 456565 4788 568999999999999999999887 8999999999999999985 999
Q ss_pred ceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHH-----------
Q psy8087 239 AEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRK----------- 307 (658)
Q Consensus 239 ~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~----------- 307 (658)
||||||||||||+||+|+|+++|+||+++++.+.+++...+....+++ +.||+||||.||++++..
T Consensus 293 pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~---~~pf~Rity~eAi~~~~~~~~~~~~~~~~ 369 (529)
T 4ex5_A 293 PEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDL---AQPFHRLTITQAIQKYAPSYTDGQLSDDA 369 (529)
T ss_dssp SEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEET---TSCCEEEEHHHHHHHHCTTSCHHHHTCHH
T ss_pred cHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeecc---CCCceEEEHHHHHHHHhCCCChhhcCCHH
Confidence 999999999999999999999999999999999887543332222333 579999999999987532
Q ss_pred --------cCCCCCCCC--CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCccee
Q psy8087 308 --------HEIRKPDNT--EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEV 377 (658)
Q Consensus 308 --------~g~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei 377 (658)
.|++.+... .+.+|+.++..++.++++.+++|+||+|||.+++|| ++.+++||++++|||||++|+ ||
T Consensus 370 ~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G~-Ei 447 (529)
T 4ex5_A 370 FLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPL-ARESDTVAGITERFELFITGR-EI 447 (529)
T ss_dssp HHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTT-BCBCSSSTTEEEEEEEEETTE-EE
T ss_pred HHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCC-cccCCCCCCceEEEEEEECCE-EE
Confidence 233322100 234556667778889999999999999999999999 588899999999999999996 99
Q ss_pred eeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhh
Q psy8087 378 IGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQ 449 (658)
Q Consensus 378 ~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~ 449 (658)
+|||+|+|||++|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||.+||||||+|| .
T Consensus 448 anG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP---~ 524 (529)
T 4ex5_A 448 ANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP---H 524 (529)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC---C
T ss_pred ecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCC---c
Confidence 99999999999999999764 444443 389999999999999999999999999999999999999994 5
Q ss_pred hhh
Q psy8087 450 LKK 452 (658)
Q Consensus 450 lk~ 452 (658)
+|+
T Consensus 525 ~r~ 527 (529)
T 4ex5_A 525 LRR 527 (529)
T ss_dssp CCC
T ss_pred cCC
Confidence 553
No 6
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=8.5e-91 Score=773.09 Aligned_cols=392 Identities=21% Similarity=0.311 Sum_probs=319.0
Q ss_pred CCCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh--
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-- 114 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-- 114 (658)
.|||. |.++++++++.+..... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++.. +.+.
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~ 111 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQ 111 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSSTTHHHHT
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCC-cEEEEEEECCeeEEEEEECCcCCHHHHHHH
Confidence 36665 66777888886542110 12788999999999999985 8999999999999999987643 2232
Q ss_pred hhcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCc-cc---------C
Q psy8087 115 ALLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLK-QG---------G 160 (658)
Q Consensus 115 ~~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~-~~---------~ 160 (658)
...++.||+|.|+|.|.+++.+.+++.++. | ++||||||++.. ++ +
T Consensus 112 ~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~ 191 (504)
T 1e1o_A 112 FKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILA 191 (504)
T ss_dssp GGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHH
Confidence 357999999999999999988764433221 1 148999974433 22 6
Q ss_pred chHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+||+||.++||+||+||+|+ ++++|| +++|. +++||.++||+||||||||+|++ |++||||||||||||++++ |
T Consensus 192 ~iR~f~~~~gFlEVeTPiL~-~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~-r 269 (504)
T 1e1o_A 192 AIRQFMVARGFMEVETPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-R 269 (504)
T ss_dssp HHHHHHHTTTCEECCCCSEE-SSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC--
T ss_pred HHHHHHHHCCCEEEECCeEE-ecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCc-c
Confidence 99999999999999999997 556665 57884 48999999999999999999987 7999999999999999987 9
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCC-
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDN- 315 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~- 315 (658)
|||||||||+||+|+|++|+|+++|+||+++++.+.+++...+....++ ++.||+||||.||++.+... ++..+.
T Consensus 270 H~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~---~~~pf~rity~eAi~~~~~d-~d~~~~~ 345 (504)
T 1e1o_A 270 HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD---FGKPFEKLTMREAIKKYRPE-TDMADLD 345 (504)
T ss_dssp CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEE---TTSCCEEEEHHHHHHHHSTT-CCGGGGG
T ss_pred ccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeec---cCCCceEEeHHHHHHHHcCC-CCccccC
Confidence 9999999999999999999999999999999999988764222111123 34799999999999986320 222110
Q ss_pred -----------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceee
Q psy8087 316 -----------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI 378 (658)
Q Consensus 316 -----------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~ 378 (658)
..+.+|+.+...++.++++.+.+|+||+|||.+++|| ++++++||+++++||||++|+ ||+
T Consensus 346 ~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~pf-~~~~~~dp~~~~~fDL~i~G~-Ei~ 423 (504)
T 1e1o_A 346 NFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL-ARRNDVNPEITDRFEFFIGGR-EIG 423 (504)
T ss_dssp SHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEEETTE-EEE
T ss_pred CHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCCeEEEECCCcccCcC-cCCCCCCCCceEEEEEEECCe-EEc
Confidence 0123344456678889999999999999999999999 788899999999999999998 999
Q ss_pred eceeccCCHHHHHHHHHHc-----CCCCCC---CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 379 GGSMRIWDPEELLAGYKRE-----GIDPAP---YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 379 ~G~~r~~d~~~~~~~~~~~-----g~~~~~---~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
|||+|+|||++|++||+++ ..+++. ++|||+|++||||||||||||||||+|+|||.+||||||+||.
T Consensus 424 ~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr 499 (504)
T 1e1o_A 424 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 499 (504)
T ss_dssp EEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCC
T ss_pred cceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCC
Confidence 9999999999999999874 124444 4899999999999999999999999999999999999999963
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-90 Score=757.83 Aligned_cols=381 Identities=26% Similarity=0.438 Sum_probs=332.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++. +.+. ...|+.||+|.|+|.|.+
T Consensus 4 ~~~~~~l~~~----~~~~~V~v~Gwv~~~R~~g~-~~F~~lrD~~g~iQ~v~~~~~-~~~~~~~~l~~~~~v~v~G~v~~ 77 (429)
T 1wyd_A 4 SHFIADVTPE----YDGKEVIWAGWVHLLRDLGG-KKFIILRDKTGLGQVVVDKNS-SAFGISQELTQESVIQVRGIVKA 77 (429)
T ss_dssp SSCTTTCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEE
T ss_pred EEEHHHhhHH----hCCCEEEEEEEEEEEecCCC-eEEEEEEECCeeEEEEEeCCh-HHHHHHHhCCCCCEEEEEEEEEe
Confidence 3445666442 57899999999999999986 999999999999999998653 3332 357999999999999999
Q ss_pred CCCC--ccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEEc
Q psy8087 133 VPEE--NMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVT 175 (658)
Q Consensus 133 ~p~~--~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~ 175 (658)
+|.+ .+++.+++ | ++||||||++..++ +++|+||.++||+||+
T Consensus 78 ~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~ 157 (429)
T 1wyd_A 78 DKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIF 157 (429)
T ss_dssp CSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred cCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9875 33322210 1 14899999765443 5999999999999999
Q ss_pred CCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHH
Q psy8087 176 PPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDD 255 (658)
Q Consensus 176 TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~ 255 (658)
||+|+.+.+||++++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+|++|.|++|
T Consensus 158 TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 237 (429)
T 1wyd_A 158 TPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYND 237 (429)
T ss_dssp CCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHH
T ss_pred CCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHH
Confidence 99999888999999999999999999999999999995558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcc
Q psy8087 256 LLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ 335 (658)
Q Consensus 256 ~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~ 335 (658)
+|+++|+|++++++.+.+++...+..++.++..++.||+||||.||++++++.|++ ..||+++...+|++|.+.
T Consensus 238 lm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g~~------~~~~~~l~~~~e~~l~~~ 311 (429)
T 1wyd_A 238 VMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYN------IKFGDDIGTPELRILNEE 311 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSSCC------CCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcCCC------cccCcccCcHHHHHHHHH
Confidence 99999999999999998766444444443333235799999999999999888754 467888999999999888
Q ss_pred cC-CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC
Q psy8087 336 IN-RPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG 414 (658)
Q Consensus 336 ~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G 414 (658)
+. +|+||+|||.+++||||+++++||+++++||||++|+ ||+|||+|+|||++|++||+++|++++.|+|||+|++||
T Consensus 312 ~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG 390 (429)
T 1wyd_A 312 LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYG 390 (429)
T ss_dssp HCCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSC
T ss_pred hccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcC
Confidence 76 5999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 415 STPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 415 ~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+|||||||||||||+|+|+|.+||||||+||..
T Consensus 391 ~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 423 (429)
T 1wyd_A 391 MPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423 (429)
T ss_dssp CCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCB
T ss_pred CCCceEEEEcHHHHHHHHcCCCcHHhEEecCCC
Confidence 999999999999999999999999999999743
No 8
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2e-90 Score=770.30 Aligned_cols=378 Identities=27% Similarity=0.438 Sum_probs=305.8
Q ss_pred ccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hh-h-hhhcCCCccEEEEEEEeE
Q psy8087 56 EVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QT-E-HALLLSTESSVQFRGRIE 131 (658)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~-~-~~~~l~~es~V~v~G~l~ 131 (658)
.++++.. ...|++|+|+|||+++|.+| +++|++|||++|.||||++.+.. .. + ....|+.||+|.|+|+|.
T Consensus 52 ~i~~l~~----~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 126 (548)
T 3i7f_A 52 EIEELVP----AMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVK 126 (548)
T ss_dssp CGGGCSG----GGTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE
T ss_pred Ehhhcch----hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 4556643 36789999999999999998 59999999999999999986321 11 2 235799999999999999
Q ss_pred eCCC-------CccceEecC-----------C------------------------------------------------
Q psy8087 132 KVPE-------ENMKVQLIH-----------P------------------------------------------------ 145 (658)
Q Consensus 132 ~~p~-------~~~d~~l~~-----------p------------------------------------------------ 145 (658)
+++. +.+|+.++. |
T Consensus 127 ~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 206 (548)
T 3i7f_A 127 AVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEY 206 (548)
T ss_dssp ECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------
T ss_pred eCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccccccccccc
Confidence 8764 222211100 0
Q ss_pred ----------------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeec
Q psy8087 146 ----------------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN 194 (658)
Q Consensus 146 ----------------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~ 194 (658)
++||||||++..++ ++||+||.++||+||+||+|+++++|||+++|.++
T Consensus 207 ~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~ 286 (548)
T 3i7f_A 207 AKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK 286 (548)
T ss_dssp ------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC--------------
T ss_pred cccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEe
Confidence 14899999876544 58999999999999999999999999999999999
Q ss_pred cCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHh
Q psy8087 195 FFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVM 272 (658)
Q Consensus 195 ~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~ 272 (658)
||+.++||+||||||||+|++ |++||||||||||||+++++|||||||||||||+|. ||+|+|+++|+||++++..+.
T Consensus 287 ~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~ 366 (548)
T 3i7f_A 287 YFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIP 366 (548)
T ss_dssp -----CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 799999999999999999999999999999999998 799999999999999999997
Q ss_pred hcccccccc----cC-CCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhc----ccCCc-EEE
Q psy8087 273 ATHGDLVRQ----MN-PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTD----QINRP-IML 342 (658)
Q Consensus 273 ~~~~~~~~~----~~-~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~----~~~~p-~fi 342 (658)
+.+...+.. +. ..+. . .||+||||.||++++++.|++. .|+.+++..+|+++++ .++.| +||
T Consensus 367 ~~~~~el~~~~~~~~~~~~~-~-~pf~rit~~eai~~l~~~g~~~------~~~~dl~~~~e~~l~~~i~~~~~~~~~~i 438 (548)
T 3i7f_A 367 KRFPDELKVIRKQYPFEDLI-Y-RPFLRLTYKEAIEMLRASGETI------GDYDDFTTPQEVKLGELIKAKYNTDFYIL 438 (548)
T ss_dssp HHCHHHHHHHHHHSCCCCCC-C-CSCEEEEHHHHHHHHHHTTCCC------CTTCCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HhhhHHHHHhhhcCCccccc-c-CCcceeEHHHHHHHHHHcCCCC------CCccccchHHHHHHHHHHHHHcCCCeEEE
Confidence 655332211 11 1121 1 6999999999999999988753 4678899888887765 34555 567
Q ss_pred EeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCcccee
Q psy8087 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYG 422 (658)
Q Consensus 343 ~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~G 422 (658)
+|||.+++||||+.+++||++++|||||++| +||+|||+|+|||++|++||+++|++++.|+|||+|++||||||||||
T Consensus 439 ~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~G 517 (548)
T 3i7f_A 439 DKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCG 517 (548)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEE
T ss_pred ecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEE
Confidence 8999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcccCcchhhHHHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
||||||+|++||.+||||||+||..
T Consensus 518 lGiDRLvMlltg~~nIRdVi~FPR~ 542 (548)
T 3i7f_A 518 IGLERITMLYLGIPNIRKVTLFPRD 542 (548)
T ss_dssp EEHHHHHHHHTTCSCGGGGSSSCCB
T ss_pred EcHHHHHHHHhCCccHHHhhcCCCC
Confidence 9999999999999999999999854
No 9
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=5e-90 Score=765.88 Aligned_cols=391 Identities=19% Similarity=0.260 Sum_probs=321.1
Q ss_pred CCCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-h
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-A 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~ 115 (658)
.|||. |.++++++++.+..... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. .
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~ 103 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGK-AGFAHIQDVTGQIQIYVRQDDVGEQQYELF 103 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCC-cEEEEEEECCEeEEEEEECCcCCHHHHHHH
Confidence 35665 66677788876542110 12788999999999999985 89999999999999999865321 232 2
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCcc-c---------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQ-G---------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~-~---------~~ 161 (658)
..++.||+|.|+|.|.+++.+.+++.++. | ++||||||++... + ++
T Consensus 104 ~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~ 183 (493)
T 3a74_A 104 KISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQS 183 (493)
T ss_dssp HHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHH
Confidence 47999999999999999988764433221 1 2489999744332 2 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|++ +++|+ +++|.+ +++|.++||+||||||||+|++ |++||||||||||||++++ ||
T Consensus 184 iR~ff~~~gF~EVeTPiL~~-~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~-rH 261 (493)
T 3a74_A 184 MRRYLDSHGYLEVETPMMHA-VAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RH 261 (493)
T ss_dssp HHHHHHHTTCEECCCCSEES-SCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBT-TB
T ss_pred HHHHHHhCCeEEEECCeEEe-cCCCCcccceEecccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCc-cc
Confidence 99999999999999999974 45555 678844 8999999999999999999887 7999999999999999987 99
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCC-CC--
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK-PD-- 314 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~-~~-- 314 (658)
||||||||+||+|+|++|+|+++|+||+++++.+.+++...+....++ ++.||+||||.||++.+. |++. .+
T Consensus 262 ~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~---~~~pf~rity~eai~~~~--~~d~~~~~~ 336 (493)
T 3a74_A 262 NPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVD---LTPEWRRLHMVDAIKEYV--GVDFWRQMS 336 (493)
T ss_dssp CSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEE---CCSSCEEEEHHHHHHHHT--CCCTTSCCC
T ss_pred CCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeec---cCCCcceeeHHHHHHHHh--CCCCccccC
Confidence 999999999999999999999999999999999988764222111123 347999999999999863 3332 10
Q ss_pred ---------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeee
Q psy8087 315 ---------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIG 379 (658)
Q Consensus 315 ---------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~ 379 (658)
...+.+|+++...++.++++.+.+|+||+|||.+++|| ++++++||+++++||||++|+ ||+|
T Consensus 337 ~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fv~dyP~~~~pf-~~~~~~dp~~~~~fDL~i~G~-Ei~~ 414 (493)
T 3a74_A 337 DEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPL-AKKNPDDPRFTDRFELFIVGR-EHAN 414 (493)
T ss_dssp HHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEEETTE-EEEE
T ss_pred HHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCCcEEEECCCcccCCc-cCcCCCCCCeEEEEEEEeCCe-EEec
Confidence 01134566777888999999999999999999999999 788889999999999999998 9999
Q ss_pred ceeccCCHHHHHHHHHHc-----CCCCCC---CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 380 GSMRIWDPEELLAGYKRE-----GIDPAP---YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 380 G~~r~~d~~~~~~~~~~~-----g~~~~~---~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
||+|+|||++|++||+++ ..+++. ++|||+|++||||||||||||||||+|+|||.+||||||+||.
T Consensus 415 G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr 489 (493)
T 3a74_A 415 AFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489 (493)
T ss_dssp EEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCC
T ss_pred CcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCC
Confidence 999999999999999874 124443 4899999999999999999999999999999999999999963
No 10
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=4.1e-89 Score=749.66 Aligned_cols=383 Identities=34% Similarity=0.567 Sum_probs=334.6
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhcCCCccEEEEEEEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALLLSTESSVQFRGRI 130 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~l~~es~V~v~G~l 130 (658)
++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++.. +.+. ...|+.||+|.|+|.|
T Consensus 4 ~~~~~~l~~~----~~~~~V~v~G~v~~~R~~g~-~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v 78 (434)
T 1x54_A 4 KVYCQEVKPE----LDGKKVRLAGWVYTNMRVGK-KIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIV 78 (434)
T ss_dssp CCCGGGCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEEHHHhhHH----hCCCEEEEEEEEEEEecCCC-eEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEE
Confidence 4456677442 57899999999999999986 9999999999999999976432 2232 3579999999999999
Q ss_pred EeCCCC--ccceEec----------CC--------------CceeEEeecCCccc---------CchHHHhhhCCcEEEc
Q psy8087 131 EKVPEE--NMKVQLI----------HP--------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVT 175 (658)
Q Consensus 131 ~~~p~~--~~d~~l~----------~p--------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~ 175 (658)
.++|.+ .+++.++ .| ++||||||++..++ ++||+||.++||+||+
T Consensus 79 ~~~~~~~~~~el~~~~~~vl~~~~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVe 158 (434)
T 1x54_A 79 KADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVF 158 (434)
T ss_dssp EECTTSGGGEEEEEEEEEEEECCSCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred EecCCCCccEEEEEeEEEEeecCCCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999875 3332221 02 14899999665443 5999999999999999
Q ss_pred CCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHH
Q psy8087 176 PPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDD 255 (658)
Q Consensus 176 TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~ 255 (658)
||+|+.+.+||++++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+||+|.|++|
T Consensus 159 TP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 238 (434)
T 1x54_A 159 PPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWD 238 (434)
T ss_dssp CCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHH
T ss_pred CcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHH
Confidence 99999888999999999999999999999999999995558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCC---CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 256 LLDKLEDLICDTVDRVMATHGDLVRQMNPNF---EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 256 ~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~---~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
+|+++|+|++++++.+.+++...+..++.++ ..++.||+|+||.||++++++.|++ ..||++++..+|++|
T Consensus 239 lm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g~~------~~~~~dl~~~~e~~l 312 (434)
T 1x54_A 239 IMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKGVN------VEWGDDLGADEERVL 312 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTTCC------CCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcCCC------cccCCccChHHHHHH
Confidence 9999999999999999876644444433321 1124699999999999999888754 457889999999999
Q ss_pred hcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHh
Q psy8087 333 TDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQR 411 (658)
Q Consensus 333 ~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~ 411 (658)
++.+.+|+||+|||.+++||||+++++||+++++||||++ |+|||+|||+|+|||++|++||+++|++++.|+|||+|+
T Consensus 313 ~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al 392 (434)
T 1x54_A 313 TEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLR 392 (434)
T ss_dssp HTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 9988999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 412 KYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 412 ~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+||+|||||||||||||+|+|+|.+||||||+||..
T Consensus 393 ~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 428 (434)
T 1x54_A 393 RYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRT 428 (434)
T ss_dssp TSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCB
T ss_pred hcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCc
Confidence 999999999999999999999999999999999743
No 11
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=5.7e-89 Score=745.46 Aligned_cols=361 Identities=29% Similarity=0.475 Sum_probs=278.6
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCC-CccEEEEEEEeEeCCCC--ccceEecC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEE--NMKVQLIH 144 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~-~es~V~v~G~l~~~p~~--~~d~~l~~ 144 (658)
..|++|+|+|||+++|.+|| ++|++|||++|.||||+++ ..|+ .||+|.|+|.|.++|.+ .+++.++.
T Consensus 11 ~~~~~V~v~Gwv~~~R~~g~-~~F~~lrD~~g~iQ~v~~~--------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~ 81 (422)
T 1n9w_A 11 HVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQVVTGG--------LKLPLPESALRVRGLVVENAKAPGGLEVQAKE 81 (422)
T ss_dssp CTTSEEEEEEEEEEEEECSS-EEEEEEEETTEEEEEEEES--------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEE
T ss_pred cCCCEEEEEEEEEEEecCCC-eEEEEEEECCEEEEEEEEc--------cccCCCCCEEEEEEEEEecCCCCccEEEEEeE
Confidence 56899999999999999985 9999999999999999976 2589 99999999999998865 22221110
Q ss_pred -----------C----------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCc
Q psy8087 145 -----------P----------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGS 188 (658)
Q Consensus 145 -----------p----------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~ 188 (658)
| ++||||||++..++ +++|+||.++||+||+||+|+.+.+||++
T Consensus 82 ~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~ 161 (422)
T 1n9w_A 82 VEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGS 161 (422)
T ss_dssp EEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC-----------
T ss_pred EEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCc
Confidence 1 24899999765443 59999999999999999999988898999
Q ss_pred cceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHH
Q psy8087 189 TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDT 267 (658)
Q Consensus 189 ~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i 267 (658)
++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+|++|+ |++|+|+++|+|++++
T Consensus 162 ~~f~~~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 162 GLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEM 241 (422)
T ss_dssp -----------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred eeEEEeeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887899999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccC-----CcEEE
Q psy8087 268 VDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN-----RPIML 342 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~-----~p~fi 342 (658)
++.+.+++...+..++.++.....||+||||.||++++++.| + ..||.++...+|+++.+.+. +|+||
T Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~-~------~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv 314 (422)
T 1n9w_A 242 LEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL-G------YPVGQDLSEEAERLLGEYAKERWGSDWLFV 314 (422)
T ss_dssp HHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS-C------CCCCSSCCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC-C------cccccccCcHHHHHHHHHHHhhhCCceEEE
Confidence 999987665444444444332236999999999999998776 1 46788899888988877653 79999
Q ss_pred EeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCcccee
Q psy8087 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYG 422 (658)
Q Consensus 343 ~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~G 422 (658)
+|||.+++||||+.+++ +++++||||++|+ ||+|||+|+|||++|++||+++|++++.|+|||+|++||+|||||||
T Consensus 315 ~d~P~~~~pf~~~~~~d--~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~g 391 (422)
T 1n9w_A 315 TRYPRSVRPFYTYPEED--GTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFA 391 (422)
T ss_dssp ECCBGGGSCTTBCBCTT--SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEE
T ss_pred ECCChhhCcCcCCCCCC--CEEEEEEEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEE
Confidence 99999999999887654 8999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcccCcchhhHHHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
||||||+|+|||.+||||||+||..
T Consensus 392 lGiDRLvm~l~g~~~Irdvi~FPr~ 416 (422)
T 1n9w_A 392 IGAERLTQKLLGLPNVRYARAFPRD 416 (422)
T ss_dssp EEHHHHHHHHTTCSSGGGGCSCC--
T ss_pred EcHHHHHHHHhCCCcHHhEEecCCC
Confidence 9999999999999999999999854
No 12
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=2e-87 Score=745.41 Aligned_cols=374 Identities=28% Similarity=0.418 Sum_probs=318.7
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecc--c--ch-hh-hhhcCCCccEEEEEEEeEeCCC------
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADI--L--CQ-TE-HALLLSTESSVQFRGRIEKVPE------ 135 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~--~--~~-~~-~~~~l~~es~V~v~G~l~~~p~------ 135 (658)
..|++|+|+|||+++|.+||.|+|++|||++|.||||++++ . .. .+ ....|+.||+|.|+|.|.++|.
T Consensus 34 ~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~ 113 (487)
T 1eov_A 34 DSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113 (487)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSS
T ss_pred cCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCC
Confidence 56889999999999999997669999999999999999865 1 22 22 2357999999999999999884
Q ss_pred -CccceEecC-----------C---------------------------CceeEEeecCCccc---------CchHHHhh
Q psy8087 136 -ENMKVQLIH-----------P---------------------------SSYAIVWLGDLKQG---------GYPPEVSL 167 (658)
Q Consensus 136 -~~~d~~l~~-----------p---------------------------~~R~l~lr~~~~~~---------~~iR~fl~ 167 (658)
+.+|+.++. | ++||||||++..++ ++||+||.
T Consensus 114 ~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~ 193 (487)
T 1eov_A 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193 (487)
T ss_dssp EEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 1 13899999765443 58999999
Q ss_pred hCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeee
Q psy8087 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEA 246 (658)
Q Consensus 168 ~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 246 (658)
++||+||+||+|+++.+|||+++|.++++|.++||+||||||+|++|+ |++||||||||||||+++++||+|||||||+
T Consensus 194 ~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~ 273 (487)
T 1eov_A 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDM 273 (487)
T ss_dssp HTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEE
T ss_pred hCCcEEEeCCEEEEecCCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhh
Confidence 999999999999988899999999999999999999999999999987 7999999999999999999999999999999
Q ss_pred EeecC-CHHHHHHHHHHHHHHHHHHHhhccccccccc----C-CCCCCC-CCCcceeeHHHHHHHHHHcCCCCCCCCCcc
Q psy8087 247 ECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQM----N-PNFEPP-ARPFLRMNYADAIEYLRKHEIRKPDNTEYE 319 (658)
Q Consensus 247 e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~----~-~~~~~~-~~pf~rit~~ea~~~l~~~g~~~~~~~~~~ 319 (658)
||+|. |++|+|+++|+||+++++.+.+++...+..+ . ..+... ..||++++|.||++++++.|++. .
T Consensus 274 e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~------~ 347 (487)
T 1eov_A 274 EMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI------G 347 (487)
T ss_dssp EEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCC------C
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCC------C
Confidence 99998 6999999999999999999976654322111 1 112111 23899999999999998888653 3
Q ss_pred cCCCCCCchhhhhhcc----cC-CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHH
Q psy8087 320 FGEDIPEMPERKMTDQ----IN-RPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGY 394 (658)
Q Consensus 320 ~g~~l~~~~e~~l~~~----~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~ 394 (658)
++.++....++.++.. +. .|+||+|||.+++|||++++++||+++++||||++|+ ||+|||+|+|||++|++||
T Consensus 348 ~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~ 426 (487)
T 1eov_A 348 DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERM 426 (487)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHH
Confidence 4567777788777643 33 3689999999999999999999999999999999995 9999999999999999999
Q ss_pred HHcCCCCC--CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 395 KREGIDPA--PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 395 ~~~g~~~~--~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++.|++++ .++|||+|++||+|||||||||||||+|+|||.+||||||+||..+
T Consensus 427 ~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 482 (487)
T 1eov_A 427 KAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDP 482 (487)
T ss_dssp HHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBT
T ss_pred HHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCCC
Confidence 99999998 7999999999999999999999999999999999999999998643
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=5.9e-86 Score=745.27 Aligned_cols=372 Identities=23% Similarity=0.324 Sum_probs=300.7
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.||||++.+. ..+. ...|+.||+|.|+|.|..
T Consensus 4 t~~~~~l~~~----~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~-~~~~~~~~l~~e~~V~V~G~v~~ 77 (580)
T 1l0w_A 4 THYAGSLRET----HVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS-PAYATAERVRPEWVVRAKGLVRL 77 (580)
T ss_dssp SSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEE
T ss_pred EEEHHHhHHH----hCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-hHHHHHhcCCCCcEEEEEEEEEc
Confidence 4566777543 5789999999999999998 5999999999999999998654 2332 357999999999999998
Q ss_pred CC-------CCccceEecC----------C---------------------CceeEEeecCCccc---------CchHHH
Q psy8087 133 VP-------EENMKVQLIH----------P---------------------SSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 133 ~p-------~~~~d~~l~~----------p---------------------~~R~l~lr~~~~~~---------~~iR~f 165 (658)
+| .+.+|+.++. | ++||||||++..++ ++||+|
T Consensus 78 ~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~f 157 (580)
T 1l0w_A 78 RPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDF 157 (580)
T ss_dssp CSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 75 3333222110 1 24899999765544 699999
Q ss_pred hhhCCcEEEcCCccccccCCCCccce--eeccCC-cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCccee
Q psy8087 166 SLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFG-EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEY 241 (658)
Q Consensus 166 l~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~-~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EF 241 (658)
|.++||+|||||+|+++++|||. +| +++.++ ..+||+||||||||+||+ |++||||||||||||+++++ |+|||
T Consensus 158 l~~~gF~EVeTPiL~~s~~eGAr-~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~-r~pEF 235 (580)
T 1l0w_A 158 LDREGFVQVETPFLTKSTPEGAR-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRAD-RQPDF 235 (580)
T ss_dssp HHHTTCEECCCCSSBCCCSSSSC-CCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSS-CCSEE
T ss_pred HHhCCcEEEeCCEEecCCCCCCC-CccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCC-cCCCc
Confidence 99999999999999988898765 46 445554 455699999999999887 79999999999999999985 55699
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC----
Q psy8087 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE---- 317 (658)
Q Consensus 242 t~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~---- 317 (658)
||||+||+|+|++|+|+++|+||+++++.+.+. + ++.||+||||.||++. +|.|+|+.+.
T Consensus 236 T~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~----------~---~~~pf~rity~eA~~~---~g~dkpd~r~~~~~ 299 (580)
T 1l0w_A 236 TQLDLEMSFVEVEDVLELNERLMAHVFREALGV----------E---LPLPFPRLSYEEAMER---YGSDKPDLRFGLEL 299 (580)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC----------C---CCSSCCEEEHHHHHHH---HSSSSCCCSSCCCC
T ss_pred cceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------c---cCCCccEEEHHHHHHH---hcCCCcccccccch
Confidence 999999999999999999999999999988642 2 2369999999999987 5777776431
Q ss_pred ----------------------------------------------------cccCCC-CCCchhhh-------------
Q psy8087 318 ----------------------------------------------------YEFGED-IPEMPERK------------- 331 (658)
Q Consensus 318 ----------------------------------------------------~~~g~~-l~~~~e~~------------- 331 (658)
..|+++ +...++++
T Consensus 300 ~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~ 379 (580)
T 1l0w_A 300 KEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATE 379 (580)
T ss_dssp EECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHC
T ss_pred hhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhC
Confidence 011222 21212211
Q ss_pred ----------------------------------hhcccCCcEEEEeCCCC------------CCCCCCccCCC------
Q psy8087 332 ----------------------------------MTDQINRPIMLCRFPAD------------IKSFYMSKCPE------ 359 (658)
Q Consensus 332 ----------------------------------l~~~~~~p~fi~~~P~~------------~~pfy~~~~~~------ 359 (658)
+++ ..+|+||+|||.. ++||||+...+
T Consensus 380 ~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~ 458 (580)
T 1l0w_A 380 ARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEK 458 (580)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHH
T ss_pred CCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcC
Confidence 112 4679999999986 89997665432
Q ss_pred Cc-Cc-eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 360 NP-AL-TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 360 ~~-~~-~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
|| .+ +++||||+||+ ||+|||+|+|||++|+++|+.+|++++. |+|||+|++||+|||||||||||||+|+||
T Consensus 459 dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~ 537 (580)
T 1l0w_A 459 DPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMT 537 (580)
T ss_dssp CGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHH
T ss_pred CccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHc
Confidence 57 36 99999999998 9999999999999999999999998876 899999999999999999999999999999
Q ss_pred cccCcchhhHHHHHhhhh
Q psy8087 434 NQYHVRDKYQLIAKAQLK 451 (658)
Q Consensus 434 g~~~Irdvi~f~~k~~lk 451 (658)
|.+||||||+||..+.-.
T Consensus 538 g~~sIRdVi~FP~~~~~~ 555 (580)
T 1l0w_A 538 GSPSIREVIAFPKNKEGK 555 (580)
T ss_dssp TCSSGGGGSSSCCCTTSC
T ss_pred CCCcHHeEecCCCCCCcc
Confidence 999999999997654443
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.3e-85 Score=744.84 Aligned_cols=372 Identities=21% Similarity=0.301 Sum_probs=296.6
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.||||++.+..+.+. ...|+.||+|.|+|.|..
T Consensus 3 t~~~~~l~~~----~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~ 77 (585)
T 1c0a_A 3 TEYCGQLRLS----HVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRA 77 (585)
T ss_dssp SSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEE
T ss_pred eeEHHHHHHH----hCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEc
Confidence 4456677443 5689999999999999998 599999999999999999865423332 357999999999999998
Q ss_pred CCC---------CccceEecC----------C-------------CceeEEeecCCccc---------CchHHHhhhCCc
Q psy8087 133 VPE---------ENMKVQLIH----------P-------------SSYAIVWLGDLKQG---------GYPPEVSLANGI 171 (658)
Q Consensus 133 ~p~---------~~~d~~l~~----------p-------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF 171 (658)
+|+ +.+++.++. | ++||||||++..++ ++||+||.++||
T Consensus 78 ~~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gF 157 (585)
T 1c0a_A 78 RDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGF 157 (585)
T ss_dssp CCTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcccccccCCCccEEEEEeEEEEEeccCCCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 864 323332211 1 24999999765544 699999999999
Q ss_pred EEEcCCccccccCCCCccce--eeccC-CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeE
Q psy8087 172 AKVTPPTLVQTQVEGGSTLF--SLNFF-GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAE 247 (658)
Q Consensus 172 ~EV~TPiL~~~~~eG~~~~F--~~~~~-~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e 247 (658)
+|||||+|+++++|||.+ | +++.+ |..+||+||||||||+||+ |++||||||||||||+++++|| |||||||+|
T Consensus 158 lEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e 235 (585)
T 1c0a_A 158 LDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVE 235 (585)
T ss_dssp EECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEE
T ss_pred EEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcC-cccceeeee
Confidence 999999999888988654 6 34544 4556699999999999887 7999999999999999998555 699999999
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC----------
Q psy8087 248 CAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE---------- 317 (658)
Q Consensus 248 ~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~---------- 317 (658)
|+|+|++|+|+++|+||+++++.+.+.+ .+ +|+||||.||++. +|.++|+.+.
T Consensus 236 ~af~d~~dvm~~~E~li~~i~~~v~~~~-------------~~-~f~r~ty~ea~~~---~g~dkpd~r~~~~l~d~~~~ 298 (585)
T 1c0a_A 236 TSFMTAPQVREVMEALVRHLWLEVKGVD-------------LG-DFPVMTFAEAERR---YGSDKPDLRNPMELTDVADL 298 (585)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHHSCC-------------CC-SCCEEEHHHHHHH---HSCSSCCTTSCCCEEECHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhCCC-------------cc-ccceeeHHHHHHH---hcCCCccccCCceeEEehhh
Confidence 9999999999999999999999987532 11 2888888888875 4665554320
Q ss_pred -----------------------------------------------------cccCC------CCCCchhh--------
Q psy8087 318 -----------------------------------------------------YEFGE------DIPEMPER-------- 330 (658)
Q Consensus 318 -----------------------------------------------------~~~g~------~l~~~~e~-------- 330 (658)
..|++ .+...+++
T Consensus 299 ~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~ 378 (585)
T 1c0a_A 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIE 378 (585)
T ss_dssp HTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHH
T ss_pred hccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHH
Confidence 01111 11111111
Q ss_pred ----------------------------------------hhhcccCCcEEEEeCCCC-----------CCCCCCccCCC
Q psy8087 331 ----------------------------------------KMTDQINRPIMLCRFPAD-----------IKSFYMSKCPE 359 (658)
Q Consensus 331 ----------------------------------------~l~~~~~~p~fi~~~P~~-----------~~pfy~~~~~~ 359 (658)
++++...+|+||+|||.. ++||||+...+
T Consensus 379 ~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~d 458 (585)
T 1c0a_A 379 DILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMT 458 (585)
T ss_dssp HHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCC
T ss_pred HHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCccCCCchh
Confidence 122224579999999996 89997765432
Q ss_pred ------Cc-Cc-eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhH
Q psy8087 360 ------NP-AL-TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 360 ------~~-~~-~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
|| .+ +++||||+||+ ||+|||+|+|||++|+++|+.+|++++. |+|||+|++||+||||||||||||
T Consensus 459 l~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDR 537 (585)
T 1c0a_A 459 AAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDR 537 (585)
T ss_dssp HHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHH
T ss_pred hhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHH
Confidence 67 36 99999999998 9999999999999999999999998765 889999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHHhhh
Q psy8087 428 VLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|+|+|||.+||||||+||..+.-
T Consensus 538 Lvmlltg~~sIRdVi~FPr~~~~ 560 (585)
T 1c0a_A 538 LTMLLTGTDNIRDVIAFPKTTAA 560 (585)
T ss_dssp HHHHHHTCSCGGGGSSSCCCTTS
T ss_pred HHHHHcCCCcHHheecCCCCCCc
Confidence 99999999999999999755443
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-78 Score=678.57 Aligned_cols=373 Identities=21% Similarity=0.281 Sum_probs=296.2
Q ss_pred CCccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhcCCCccEEEEEE
Q psy8087 52 PSPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALLLSTESSVQFRG 128 (658)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~l~~es~V~v~G 128 (658)
.++++++++... ..|++|+|+|||+++|. + +|++|||++|.||||++++.. +.+. ...|+.||+|.|+|
T Consensus 10 ~rt~~~~~l~~~----~~g~~V~l~GwV~~~R~-~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G 81 (617)
T 4ah6_A 10 VRTNTCGELRSS----HLGQEVTLCGWIQYRRQ-N---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG 81 (617)
T ss_dssp SCSSCGGGCCGG----GTTCEEEEEEEECCCCT-T---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEE
T ss_pred cCceEHHHhHHH----hCCCEEEEEEEeeeecC-e---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEE
Confidence 346677888554 67899999999999874 3 599999999999999987653 2232 35799999999999
Q ss_pred EeEeCCC---------CccceEecC----------C---------------CceeEEeecCCccc---------CchHHH
Q psy8087 129 RIEKVPE---------ENMKVQLIH----------P---------------SSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 129 ~l~~~p~---------~~~d~~l~~----------p---------------~~R~l~lr~~~~~~---------~~iR~f 165 (658)
.|..+|. +.+|+.++. | ++||||||++..++ ++||+|
T Consensus 82 ~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f 161 (617)
T 4ah6_A 82 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREY 161 (617)
T ss_dssp EEEECSTTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccCccCCCCcEEEEEeEEEEeecCCCCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHH
Confidence 9987653 233322210 1 24999999986554 699999
Q ss_pred hh-hCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCccee
Q psy8087 166 SL-ANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEY 241 (658)
Q Consensus 166 l~-~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EF 241 (658)
|. ++||+||+||+|+++++||| .+|.+ +++|+++||+||||||||+||+ |++||||||||||||++++ +|+|||
T Consensus 162 ~~~~~gF~EVeTPiL~~st~~GA-~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t-~r~pEF 239 (617)
T 4ah6_A 162 LCNLHGFVDIETPTLFKRTPGGA-KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP-DRQPEF 239 (617)
T ss_dssp HHTTSCCEECCCCSSBCCCCSSS-CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCS-SSCSEE
T ss_pred HHhcCCeEEEeCCeeccCCCCCC-cCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCC-CcCcce
Confidence 96 79999999999998888665 55744 5678999999999999999887 8999999999999999988 679999
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc---
Q psy8087 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY--- 318 (658)
Q Consensus 242 t~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~--- 318 (658)
||||+||+|+|++|+|+++|+||+++++.+. . .+..||+||||.||+.. +|+|+||++..
T Consensus 240 t~lE~e~af~d~~d~m~~~E~l~~~~~~~~~-----------~---~~~~pf~r~ty~eA~~~---ygsDkPDlR~~~ei 302 (617)
T 4ah6_A 240 TQIDIEMSFVDQTGIQSLIEGLLQYSWPNDK-----------D---PVVVPFPTMTFAEVLAT---YGTDKPDTRFGMKI 302 (617)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHSCSSS-----------C---CCCSSCCEEEHHHHHHH---TSSSSCCSSSCCCE
T ss_pred ecceeeecCCCHHHHHHHHHHHHHHHHHHhc-----------C---ccCCCceEeEHHHHHHH---HcCCCCccccCccc
Confidence 9999999999999999999999999875321 1 23579999999999986 79999987520
Q ss_pred -------------------c---------------------------------cCC---------C--CCCchhh-----
Q psy8087 319 -------------------E---------------------------------FGE---------D--IPEMPER----- 330 (658)
Q Consensus 319 -------------------~---------------------------------~g~---------~--l~~~~e~----- 330 (658)
. +|. + +.....+
T Consensus 303 ~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee 382 (617)
T 4ah6_A 303 IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMES 382 (617)
T ss_dssp EECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHH
T ss_pred ccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHH
Confidence 0 000 0 0000000
Q ss_pred ------------------------------------hhhcc-------c-----CCcEEEEeCCC-------------CC
Q psy8087 331 ------------------------------------KMTDQ-------I-----NRPIMLCRFPA-------------DI 349 (658)
Q Consensus 331 ------------------------------------~l~~~-------~-----~~p~fi~~~P~-------------~~ 349 (658)
.+.+. + -.++||+|||. .+
T Consensus 383 ~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~H 462 (617)
T 4ah6_A 383 QRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAH 462 (617)
T ss_dssp HHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSS
T ss_pred HHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeecc
Confidence 01111 1 24799999995 58
Q ss_pred CCCCCccCCCC-------c--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHH-HcCCCCCCCcchHHHhhcCCCCcc
Q psy8087 350 KSFYMSKCPEN-------P--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYK-REGIDPAPYYWYTDQRKYGSTPHG 419 (658)
Q Consensus 350 ~pfy~~~~~~~-------~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~-~~g~~~~~~~~yl~a~~~G~pP~g 419 (658)
+||+| ++++| | ..+.+|||++||+ ||+|||+|+||+++|+++|+ ..|++++.|+|||+|++||+||||
T Consensus 463 hPFT~-P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphg 540 (617)
T 4ah6_A 463 HPFTA-PHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHG 540 (617)
T ss_dssp CSSCC-CCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEE
T ss_pred CCcCC-CChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCC
Confidence 89955 45544 2 3589999999996 99999999999999999999 778887779999999999999999
Q ss_pred ceecchhHHHHHHhcccCcchhhHHHHHhhhhhh
Q psy8087 420 GYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKV 453 (658)
Q Consensus 420 G~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~ 453 (658)
|||+|+|||+|+|+|.+||||||+||....-.+.
T Consensus 541 G~a~G~dRlvml~~g~~~irdvi~fP~~~~~~d~ 574 (617)
T 4ah6_A 541 GIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDL 574 (617)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGSSSSCCCSSSCCS
T ss_pred ceeecHHHHHHHHcCCCchheEEecCCCCCcccc
Confidence 9999999999999999999999999965444433
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.1e-72 Score=599.18 Aligned_cols=263 Identities=20% Similarity=0.310 Sum_probs=227.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-ccceeeccCC------cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSLNFFG------EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~~~~~------~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||+||.++||+||+||+|++++++|| +++|.++||+ .++||+||||||||+|++ |++||||||||||||+
T Consensus 44 ~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~ 123 (345)
T 3a5y_A 44 AEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEE 123 (345)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCC
Confidence 6999999999999999999997777654 7899999997 789999999999998876 8999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
+ +.||||||||||+||+|+|++|+|+++|+||+++++ . .||+||||.||++.+ .|++
T Consensus 124 ~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----~---------------~~~~rity~ea~~~~--~g~d 180 (345)
T 3a5y_A 124 M-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----C---------------PAAESLSYQQAFLRY--LEID 180 (345)
T ss_dssp C-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----C---------------CCCEEEEHHHHHHHH--TCCC
T ss_pred C-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----C---------------CCCcEeeHHHHHHHH--hCCC
Confidence 9 679999999999999999999999999999999985 0 389999999999875 4665
Q ss_pred CCCCC-------------C-cccC-CCCCCchhhhh----hccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEE
Q psy8087 312 KPDNT-------------E-YEFG-EDIPEMPERKM----TDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVL 370 (658)
Q Consensus 312 ~~~~~-------------~-~~~g-~~l~~~~e~~l----~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~ 370 (658)
++... . ..++ .++..+.++++ ++.+ .+|+||+|||..++|| ++.++++|.++++||||
T Consensus 181 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~-~~~~~~~~~~a~~fDL~ 259 (345)
T 3a5y_A 181 PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASL-AQISTEDHRVAERFEVY 259 (345)
T ss_dssp TTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChh-hCCCCCCCCeEEEEEEE
Confidence 43210 0 2222 34454555544 4445 5799999999999999 78888999999999999
Q ss_pred eCCcceeeeceeccCCHHHHHHHHHHc-------CCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhh
Q psy8087 371 FPNVGEVIGGSMRIWDPEELLAGYKRE-------GIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKY 442 (658)
Q Consensus 371 ~~G~~Ei~~G~~r~~d~~~~~~~~~~~-------g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi 442 (658)
++|+ ||+|||+|+|||++|++||+++ |++++.+ +|||+|++||+|||||||||||||+|+|||.+||||||
T Consensus 260 ~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi 338 (345)
T 3a5y_A 260 YKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVI 338 (345)
T ss_dssp ETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred ECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEe
Confidence 9998 9999999999999999999985 8888877 68999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8087 443 QLIAK 447 (658)
Q Consensus 443 ~f~~k 447 (658)
+||..
T Consensus 339 ~FPr~ 343 (345)
T 3a5y_A 339 AFSVD 343 (345)
T ss_dssp SSCTT
T ss_pred cCCcc
Confidence 99854
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=1.1e-64 Score=530.85 Aligned_cols=263 Identities=19% Similarity=0.378 Sum_probs=234.3
Q ss_pred eeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccc--------cCCCCccceeeccCCcceeeccCHHHHH
Q psy8087 148 YAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQT--------QVEGGSTLFSLNFFGEPAYLTQSSQLYL 210 (658)
Q Consensus 148 R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~--------~~eG~~~~F~~~~~~~~~~L~~Spqlyl 210 (658)
|++|||++ .++ ++||+||.++||+||+||+|.++ .+|| +++|.++|+|.++||++|||+|+
T Consensus 3 r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~~~ 80 (294)
T 1nnh_A 3 AVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMILHK 80 (294)
T ss_dssp HHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHHHH
T ss_pred hHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHHHH
Confidence 89999998 544 59999999999999999999887 6766 88999999999999999999999
Q ss_pred HHhcc-cCCcEEEEeeeeecCC--CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCC
Q psy8087 211 ETCLP-ALGDVYCIAQSYRAEN--SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE 287 (658)
Q Consensus 211 k~li~-g~~rvfeI~~~FR~E~--~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~ 287 (658)
|++++ |++|||+||||||||+ +++.||+|||||||+|++|.|++|+|+++|+|+++++..+.+.. +..+.
T Consensus 81 ~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~-------~~~i~ 153 (294)
T 1nnh_A 81 QLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT-------GREFP 153 (294)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-------SSCCC
T ss_pred HHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-------ccccc
Confidence 99987 6999999999999999 88789999999999999999999999999999999998876421 11221
Q ss_pred CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEE
Q psy8087 288 PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESV 367 (658)
Q Consensus 288 ~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~f 367 (658)
.+ .+|+|+||.||++. .|. .+|+ ++.+.+|+||+||| +|||++. ||+++++|
T Consensus 154 ~~-~~~~r~~y~ea~~~---~g~----------------~~er--~~~~~~P~~v~~~P---~pf~~~~---d~~~~~~~ 205 (294)
T 1nnh_A 154 KT-KRFEVFEYSEVLEE---FGS----------------DEKA--SQEMEEPFWIINIP---REFYDRE---VDGFWRNY 205 (294)
T ss_dssp CC-SSCEEEEHHHHHHH---TSS----------------HHHH--HHHCSSCEEEECCC---CCTTBCE---ETTEECEE
T ss_pred cC-CCceEeEHHHHHHH---hCC----------------hHhh--hhhcCCCEEEEcCC---hHHhCCC---CCCeEEEE
Confidence 12 24999999999963 442 2344 34467899999999 9998876 78899999
Q ss_pred EEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCC-CccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 368 DVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGST-PHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 368 dL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~p-P~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
|||++ |+|||+|||+|+|||++|.++|+..|++++.|+|||+|++||+| ||||||||+|||+|+++|.+||||||+||
T Consensus 206 Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp 285 (294)
T 1nnh_A 206 DLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285 (294)
T ss_dssp EEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC
T ss_pred EEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEecc
Confidence 99999 98999999999999999999999999999999999999999999 99999999999999999999999999997
Q ss_pred HH
Q psy8087 446 AK 447 (658)
Q Consensus 446 ~k 447 (658)
..
T Consensus 286 ~~ 287 (294)
T 1nnh_A 286 RI 287 (294)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 18
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.97 E-value=7e-31 Score=289.01 Aligned_cols=164 Identities=34% Similarity=0.611 Sum_probs=142.0
Q ss_pred CCCCccceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC-ccchHHhccCCCCcEEEEEEEE
Q psy8087 494 PSLPPAVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 494 ~~~~~~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.++|.+++++|+++..+.|++|+|+|||+++|++||+++|++|||++|.||||++++ ......+..|+.||+|.|+|+|
T Consensus 12 ~~~~~~~~~~i~~~~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v 91 (456)
T 3m4p_A 12 TPVETPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRL 91 (456)
T ss_dssp ----CCCCEECCSTTCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEE
T ss_pred cCCCcceEEEhhhhhhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEE
Confidence 467888999999998899999999999999999998899999999999999999873 2222335579999999999999
Q ss_pred EecCCCCCCC-----CceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHh
Q psy8087 573 EKVPEGKSAP-----GGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHF 647 (658)
Q Consensus 573 ~~~~~~~~~~-----g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL 647 (658)
++++.++.++ |++||++++++||++|+. +++...++.++.|+|+++||||||++.++++|++||+|+++||+||
T Consensus 92 ~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~-~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff 170 (456)
T 3m4p_A 92 NAYAGKNHPPEIADILNLEMQVTEWKVIGESPI-DLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYY 170 (456)
T ss_dssp ECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCG-GGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCcccCCCCcEEEEEeEEEEEecCCC-CCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHH
Confidence 9988655444 999999999999999963 2334445678999999999999999999999999999999999999
Q ss_pred hcCCcEEecCC
Q psy8087 648 ADRNYTEVNIE 658 (658)
Q Consensus 648 ~~~gF~EVeTp 658 (658)
+++||+|||||
T Consensus 171 ~~~gF~EVeTP 181 (456)
T 3m4p_A 171 HDNHFTEIQPP 181 (456)
T ss_dssp HHTTCEECCCC
T ss_pred HhCCCEEEeCC
Confidence 99999999999
No 19
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=283.78 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=146.9
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFI 543 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~i 543 (658)
++.+.|.++++++++.++.+++.... .+|..+.......|++|+|+|||+++|.+|||++|++|||++|.|
T Consensus 7 ~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~i 86 (521)
T 3bju_A 7 QYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKL 86 (521)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEE
Confidence 45567888999999998888764221 122223322344578999999999999999789999999999999
Q ss_pred EEEEcCCcc----chH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcc
Q psy8087 544 QCVLADILC----QTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLD 618 (658)
Q Consensus 544 Qvv~~~~~~----~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~ 618 (658)
|||++.+.. .+. +...|+.||+|+|+|+|.+++ +|++||.|++|++|++|.. ++|...++..++++|++
T Consensus 87 Qvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-----~ge~ei~~~~i~~l~~~~~-~lP~~~~~~~~~e~r~r 160 (521)
T 3bju_A 87 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-----KGELSIIPYEITLLSPCLH-MLPHLHFGLKDKETRYR 160 (521)
T ss_dssp EEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCCS-CCCCC----CCHHHHHH
T ss_pred EEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CCCEEEEEeEEEEeecCCC-CCCCccccccChhhhhh
Confidence 999986432 233 346799999999999998876 7899999999999999963 55655555689999999
Q ss_pred cceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 619 NRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 619 ~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||||||+ +.++++|++||+|+++||+||+++||+|||||
T Consensus 161 ~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTP 201 (521)
T 3bju_A 161 QRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201 (521)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCc
Confidence 99999995 89999999999999999999999999999999
No 20
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.96 E-value=8.6e-30 Score=279.69 Aligned_cols=155 Identities=52% Similarity=0.912 Sum_probs=127.7
Q ss_pred ecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-chHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
+|.++..+.|++|+|+|||+++|++||+++|++|||++|.||||++.+.. .+.. ..|+.||+|.|+|+|.++++++++
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~-~~l~~~~~v~v~G~v~~~~~~~~~ 80 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDA-LTVNTECTVEIYGAIKEVPEGKEA 80 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHH-HHCCTTCEEEEEEEEEECC-----
T ss_pred chhhhhhcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHH-hcCCCCCEEEEEEEEEecCCCcCC
Confidence 46666678899999999999999999889999999999999999985322 2332 369999999999999998877778
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|++||.++++++|+++++....++..+.+++|+|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 81 ~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTP 157 (435)
T 2xgt_A 81 PNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPP 157 (435)
T ss_dssp -TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred CCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 89999999999999985311112233457899999999999999999999999999999999999999999999999
No 21
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=99.96 E-value=3.4e-29 Score=278.44 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=142.8
Q ss_pred hhHHHHHHHHhHHHHHhcccCCCCCCCc--c-------ceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy8087 471 EEEDAEKREKNLEEAKKIVLKEDPSLPP--A-------VRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS 540 (658)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~-------~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~ 540 (658)
.+++.+.|.++++++++.+. +++..-. . +|..+... ....|++|+|+|||+++|.+| |++|++|||++
T Consensus 36 ~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~s 113 (529)
T 4ex5_A 36 ENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGS 113 (529)
T ss_dssp CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECSS
T ss_pred hHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeCC
Confidence 34566778899999988876 7654221 1 11111100 011278999999999999998 79999999999
Q ss_pred EEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhc
Q psy8087 541 GFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQL 617 (658)
Q Consensus 541 ~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~ 617 (658)
|.||||++.+. ..++.++.|+.||+|+|+|+|.+++ +|++||.+++|+||++|.. |+|...++..++++|+
T Consensus 114 g~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-----~gelel~~~~i~vLs~a~~-plP~k~~~l~d~e~r~ 187 (529)
T 4ex5_A 114 GQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN-----KGELSVKCTQLRLLAKALR-PLPDKFHGLADQETRY 187 (529)
T ss_dssp CEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-----TSCEEEEEEEEEEEECCSS-CCCC------CTTHHH
T ss_pred eeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-----CCcEEEEEEEEEEEecCCC-CCCccccCCcChhhhh
Confidence 99999998643 1245667899999999999998866 7899999999999999963 5666666677899999
Q ss_pred ccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 618 DNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 618 ~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||||||+ +.++++|++||+|+++||+||+++||+|||||
T Consensus 188 r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTP 229 (529)
T 4ex5_A 188 RQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETP 229 (529)
T ss_dssp HTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 999999985 79999999999999999999999999999999
No 22
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.96 E-value=7.4e-29 Score=275.78 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=140.8
Q ss_pred hhHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC----C-------ccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy8087 471 EEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG----E-------KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG 539 (658)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~-------~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~ 539 (658)
..++.+.|.+++++++ .++.+++.... ....+.+. . ...|++|+|+|||+++|.+| |++|++|||+
T Consensus 14 ~~~~~~~r~~k~~~l~-~g~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 90 (504)
T 1e1o_A 14 FNDELRNRREKLAALR-QQGVAFPNDFR-RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 90 (504)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCSSCCCCC-CSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred hhHHHHHHHHHHHHHH-hCCCCCCCCCc-CceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 3456677888898888 77777764221 11111111 0 01288999999999999998 7999999999
Q ss_pred CEEEEEEEcCCc---cchH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhh
Q psy8087 540 SGFIQCVLADIL---CQTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDV 615 (658)
Q Consensus 540 ~~~iQvv~~~~~---~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~ 615 (658)
+|.||||++.+. ..++ .+..|+.||+|.|+|+|.+++ +|++||.+++|+||++|.. ++|...++..++++
T Consensus 91 sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-----~ge~ei~~~~i~vl~~a~~-plP~k~~~~~~~e~ 164 (504)
T 1e1o_A 91 GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----TGELSIHCTELRLLTKALR-PLPDKFHGLQDQEV 164 (504)
T ss_dssp TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCSS-CCCC-------TTH
T ss_pred CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CceEEEEEEEEEEecccCC-CCCccccCCcChhh
Confidence 999999998652 2244 567899999999999998876 6899999999999999963 45544445567899
Q ss_pred hcccceeeee-chhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 616 QLDNRHIMIR-GENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 616 r~~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++|||||| ++.++++|++||+|+++||+||+++||+|||||
T Consensus 165 r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTP 208 (504)
T 1e1o_A 165 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETP 208 (504)
T ss_dssp HHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC
T ss_pred hhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999999997 589999999999999999999999999999999
No 23
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.96 E-value=2.3e-28 Score=276.09 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=130.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC--CCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--GKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~~~g~~ 585 (658)
..+.|++|+|+|||+++|++| |++|++|||++|.||||++.+...++.+..|+.||+|.|+|+|..++. ++.++|++
T Consensus 12 ~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~ 90 (580)
T 1l0w_A 12 ETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRV 90 (580)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTE
T ss_pred HHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccE
Confidence 356799999999999999998 799999999999999999865434566788999999999999999863 24468999
Q ss_pred EEEEEEEEEEecCCCCCCCccc------CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAIL------NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~------~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.|++++|||+|...|.+... +..++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 91 Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP 169 (580)
T 1l0w_A 91 EVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETP 169 (580)
T ss_dssp EEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 9999999999999632222211 346789999999999999999999999999999999999999999999999
No 24
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.96 E-value=1.3e-28 Score=273.37 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=143.4
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC----C-------ccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG----E-------KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS 540 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~-------~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~ 540 (658)
.++.+.|.++++++++.++.+++.... ....+.+. . ...|++|+|+|||+++|.+| |++|++|||++
T Consensus 6 ~~~~~~r~~k~~~l~~~g~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~s 83 (493)
T 3a74_A 6 NDQLRVRREKLKKIEELGVDPFGKRFE-RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVT 83 (493)
T ss_dssp THHHHHHHHHHHHHHHTTCCTTCCCCC-CSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCc-CceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECC
Confidence 356677888999999998888764221 11111111 0 01288999999999999998 79999999999
Q ss_pred EEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhc
Q psy8087 541 GFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQL 617 (658)
Q Consensus 541 ~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~ 617 (658)
|.||||++.+. ..++.+..|+.||+|.|+|+|.+++ +|++||.+++++||++|.. ++|...++..++++|+
T Consensus 84 g~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~-----~ge~ei~~~~i~vl~~~~~-plP~k~~~~~~~e~r~ 157 (493)
T 3a74_A 84 GQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK-----VGELSIKVSSYEFLTKALR-PLPEKYHGLKDIEQRY 157 (493)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCSS-CCCCC-----CHHHHH
T ss_pred EeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-----CCcEEEEEEEEEEcccccC-CCCccccCCCCHhhhh
Confidence 99999997642 1245567899999999999998876 6899999999999999963 4554444567899999
Q ss_pred ccceeeee-chhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 618 DNRHIMIR-GENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 618 ~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++|||||| ++.++++|++||+|+++||+||+++||+||+||
T Consensus 158 r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTP 199 (493)
T 3a74_A 158 RQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETP 199 (493)
T ss_dssp HTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECC
Confidence 99999997 589999999999999999999999999999999
No 25
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.95 E-value=3.7e-28 Score=275.13 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=131.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-chHHhccCCCCcEEEEEEEEEecCCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPEG----KSAP 582 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~ 582 (658)
..+.|++|+|+|||+++|++| +++|++|||++|.||||++.+.. .++.+..|+.||+|.|+|+|..++++ +.++
T Consensus 11 ~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~ 89 (585)
T 1c0a_A 11 LSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMAT 89 (585)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTT
T ss_pred HHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCC
Confidence 356799999999999999998 79999999999999999986532 24567789999999999999998753 3468
Q ss_pred CceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 583 GGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|++||.+++++|||+|. ++|....+.++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 90 geiEl~~~~i~vl~~a~--~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTP 163 (585)
T 1c0a_A 90 GEIEVLASSLTIINRAD--VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETP 163 (585)
T ss_dssp TTEEEEEEEEEEEECCC--SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccEEEEEeEEEEEeccC--CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 99999999999999996 245445557899999999999999999999999999999999999999999999999
No 26
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.95 E-value=5.6e-28 Score=269.08 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=136.4
Q ss_pred CccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cc-hHHhccCCCCcEEEEEEE
Q psy8087 497 PPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQ-TEHALLLSTESSVQFRGR 571 (658)
Q Consensus 497 ~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~-~~~~~~L~~gs~V~V~G~ 571 (658)
+..+|+++.++ ..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. .. ++++..|+.||+|.|+|+
T Consensus 46 ~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~ 124 (548)
T 3i7f_A 46 TGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGI 124 (548)
T ss_dssp CCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEE
T ss_pred CCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEE
Confidence 34577777776 477899999999999999999 8999999999999999998632 12 356788999999999999
Q ss_pred EEecCCC-CC-CCCceEEEEEEEEEEecCCCCCCCcccC-----------------------------------------
Q psy8087 572 IEKVPEG-KS-APGGHELKVDYWEVVGLAPAGGADAILN----------------------------------------- 608 (658)
Q Consensus 572 v~~~~~~-~~-~~g~~El~~~~i~vls~~~~~~~~~~~~----------------------------------------- 608 (658)
|.+++.+ ++ ++|++||++++|+|||+|+. ++|....
T Consensus 125 v~~~~~~~~~~~~~~~El~~~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (548)
T 3i7f_A 125 VKAVEKPIEKATQQDVEIHVTSIAVVSLAEY-PLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLK 203 (548)
T ss_dssp EEECSSCCTTSSSCSEEEEEEEEEEEECCCB-SCSSCSGGGSCCHHHHHHHHHHTTCC----------------------
T ss_pred EEeCCcccccCCCCcEEEEEeEEEEEecCCC-CCCCCchhcccccccccccccccccccccccccccccccccccccccc
Confidence 9998753 22 36899999999999999963 3443311
Q ss_pred ----------------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 609 ----------------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 609 ----------------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 204 ~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTP 269 (548)
T 3i7f_A 204 DEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTP 269 (548)
T ss_dssp ---------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCC
Confidence 13578999999999999999999999999999999999999999999999
No 27
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=99.95 E-value=5.8e-28 Score=264.55 Aligned_cols=145 Identities=23% Similarity=0.373 Sum_probs=128.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.||||++++.. .++.++.|+.||+|.|+|+|.+++ .++|++
T Consensus 13 ~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~---~~~~~~ 88 (438)
T 3nem_A 13 ELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP---KAKLGF 88 (438)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT---TSTTSE
T ss_pred hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---CCCCcE
Confidence 35799999999999999998 79999999999999999987542 246678899999999999999876 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||++++++||++|.. ++|...++ .++.|+|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 89 el~~~~i~vl~~~~~-~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTP 162 (438)
T 3nem_A 89 EILPEKIVVLNRAET-PLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTP 162 (438)
T ss_dssp EEEEEEEEEEECBCS-SCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEEEEEEEecCCC-CCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCC
Confidence 999999999999963 44544443 3789999999999999999999999999999999999999999999999
No 28
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.5e-27 Score=259.30 Aligned_cols=145 Identities=29% Similarity=0.402 Sum_probs=128.4
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
.+.|++|+|+|||+++|++| |++|++|||++|.||||++++...++.+..|+.||+|.|+|+|.+++. ++|++||.
T Consensus 13 ~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~---~~~~~el~ 88 (429)
T 1wyd_A 13 EYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKR---APRGIELH 88 (429)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSS---SGGGEEEE
T ss_pred HhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecCC---CCccEEEE
Confidence 46799999999999999998 699999999999999999875444566788999999999999999873 36899999
Q ss_pred EEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 589 VDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 589 ~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+++++|||+|+. ++|..... .++.|+|+++||||||++.++++|++||.|++++|+||.++||+||+||
T Consensus 89 ~~~~~vl~~~~~-~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP 159 (429)
T 1wyd_A 89 AEEITLLSKAKA-PLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTP 159 (429)
T ss_dssp EEEEEEEECCCS-SCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EeEEEEeccCCC-CCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 999999999953 34433222 3789999999999999999999999999999999999999999999999
No 29
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.95 E-value=1.6e-27 Score=264.69 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=134.4
Q ss_pred ccceeecccCC-c-cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC----cc--chHHhccCCCCcEEEEE
Q psy8087 498 PAVRIKIKDGE-K-YRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI----LC--QTEHALLLSTESSVQFR 569 (658)
Q Consensus 498 ~~~~~~i~~~~-~-~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~----~~--~~~~~~~L~~gs~V~V~ 569 (658)
..+++.+.++. . +.|++|+|+|||+++|++|+.|+|++|||++|.||||++.+ .. .++.+..|+.||+|.|+
T Consensus 20 ~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~ 99 (487)
T 1eov_A 20 GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVR 99 (487)
T ss_dssp CCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred ccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEE
Confidence 34556666653 3 67999999999999999995459999999999999999764 11 23567789999999999
Q ss_pred EEEEecCCCC--CCCCceEEEEEEEEEEecCCCCCCCcccC--------------CCCChhhhcccceeeeechhhHHHH
Q psy8087 570 GRIEKVPEGK--SAPGGHELKVDYWEVVGLAPAGGADAILN--------------EEALPDVQLDNRHIMIRGENTSRVL 633 (658)
Q Consensus 570 G~v~~~~~~~--~~~g~~El~~~~i~vls~~~~~~~~~~~~--------------~~~~~e~r~~~R~LdLR~~~~~~if 633 (658)
|+|.+++.++ .++|++||.+++++|||+|.. ++|.... ..++.|+|+++||||||++.++++|
T Consensus 100 G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~-~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~ 178 (487)
T 1eov_A 100 GIVKKVDEPIKSATVQNLEIHITKIYTISETPE-ALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIF 178 (487)
T ss_dssp EEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS-SCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHH
T ss_pred EEEEeCCCCCcCCCCCcEEEEEEEEEEeecccc-cCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHH
Confidence 9999988542 346899999999999999963 3443221 1368899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 634 LMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 634 r~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||.|++++|+||+++||+||+||
T Consensus 179 ~~rs~i~~~ir~~~~~~gF~EV~TP 203 (487)
T 1eov_A 179 RIQAGVCELFREYLATKKFTEVHTP 203 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 9999999999999999999999999
No 30
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.94 E-value=1.5e-26 Score=252.61 Aligned_cols=142 Identities=29% Similarity=0.462 Sum_probs=115.7
Q ss_pred cccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCC-CCcEEEEEEEEEecCCCCCCC
Q psy8087 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEGKSAP 582 (658)
Q Consensus 504 i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~~~~~~~ 582 (658)
+.++..+.|++|+|+|||+++|.+| |++|++|||++|.||||+++ ..|+ .||+|.|+|+|.+++. ++
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~--------~~l~~~~~~v~v~G~v~~~~~---~~ 72 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG--------LKLPLPESALRVRGLVVENAK---AP 72 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES--------CCCCCTTCEEEEEEEEEECTT---ST
T ss_pred HHHHHhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc--------cccCCCCCEEEEEEEEEecCC---CC
Confidence 4443356799999999999999998 79999999999999999975 4699 9999999999999873 36
Q ss_pred CceEEEEEEEEEEecCCCCCCCcccC---CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 583 GGHELKVDYWEVVGLAPAGGADAILN---EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~~~~~~~~~---~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|++||.++++++|++|.. ++|.... ..++.|+|+++||||||++.++++|++||.|++++|+||.++||+||+||
T Consensus 73 ~~~el~~~~~~vl~~~~~-~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TP 150 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPALE-PTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP 150 (422)
T ss_dssp TSEEEEEEEEEEEECCCS-CCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccEEEEEeEEEEeccCCc-CCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 899999999999999953 3443222 23789999999999999999999999999999999999999999999999
No 31
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.94 E-value=1.3e-26 Score=254.09 Aligned_cols=144 Identities=31% Similarity=0.449 Sum_probs=126.5
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.||||++++. ..++.+..|+.||+|.|+|+|.+++. ++|++
T Consensus 13 ~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~---~~~~~ 88 (434)
T 1x54_A 13 ELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADER---APGGA 88 (434)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT---SGGGE
T ss_pred HhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCC---CCccE
Confidence 56799999999999999998 6999999999999999997532 22456678999999999999998873 36899
Q ss_pred EEEEEEEEEEecCCCCCCCcc-cCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAI-LNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~-~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.++++++|++| .++|.. ....++.|+|+++||||||++.++++|++||.|++.+|+||.++||+||+||
T Consensus 89 el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP 160 (434)
T 1x54_A 89 EVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPP 160 (434)
T ss_dssp EEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCc
Confidence 9999999999999 234430 1235789999999999999999999999999999999999999999999999
No 32
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=251.66 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=125.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCC----CC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEG----KS 580 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~----~~ 580 (658)
..+.|++|+|+|||+++|.+ +|++|||++|.||||++.+.. .++.+..|+.||+|.|+|+|..++++ +.
T Consensus 20 ~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~ 95 (617)
T 4ah6_A 20 SSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKM 95 (617)
T ss_dssp GGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTS
T ss_pred HHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccC
Confidence 45679999999999999964 399999999999999987542 23667789999999999999987754 35
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhh-cCCcEEecC
Q psy8087 581 APGGHELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFA-DRNYTEVNI 657 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~-~~gF~EVeT 657 (658)
++|++||.+++++||++|. ++|.... ...+.++|+++||||||++.++++|++||+|+++||+||. ++||+||||
T Consensus 96 ~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeT 173 (617)
T 4ah6_A 96 PTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIET 173 (617)
T ss_dssp TTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCC
T ss_pred CCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 6799999999999999996 3444332 3457899999999999999999999999999999999995 799999999
Q ss_pred C
Q psy8087 658 E 658 (658)
Q Consensus 658 p 658 (658)
|
T Consensus 174 P 174 (617)
T 4ah6_A 174 P 174 (617)
T ss_dssp C
T ss_pred C
Confidence 9
No 33
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.86 E-value=6.5e-21 Score=194.87 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=206.7
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccC------CCCccceeeccC---CcceeeccCHHHHHHHhcc--cC---CcE
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQV------EGGSTLFSLNFF---GEPAYLTQSSQLYLETCLP--AL---GDV 220 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~------eG~~~~F~~~~~---~~~~~L~~Spqlylk~li~--g~---~rv 220 (658)
+.+++||. +.|+++|..|+++.... .|...|..++.. |..+-..+|--.||++++. +| +.+
T Consensus 13 ~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGl 92 (330)
T 12as_A 13 SFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGL 92 (330)
T ss_dssp HHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEE
T ss_pred HHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhCCCCCCCee
Confidence 57889998 89999999999975433 122334333333 7789999999999999886 57 999
Q ss_pred EEEeeeeecCCC-CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHH
Q psy8087 221 YCIAQSYRAENS-RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYA 299 (658)
Q Consensus 221 feI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ 299 (658)
|.-.++.|.++- .+++|.-+|+|.|||......+..|+.++++++.|+..+..........+++. ..+..+|..+|..
T Consensus 93 ytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y~l~-p~Lp~~i~fitsq 171 (330)
T 12as_A 93 YTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLA-PFLPDQIHFVHSQ 171 (330)
T ss_dssp EEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCSCSSCEEEEHH
T ss_pred EecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCCCCceEEEeHH
Confidence 999999997553 56799999999999999999999999999999888887765543222222211 1134688899999
Q ss_pred HHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCC--CCCccCCCCcCce---------eEEE
Q psy8087 300 DAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKS--FYMSKCPENPALT---------ESVD 368 (658)
Q Consensus 300 ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~p--fy~~~~~~~~~~~---------~~fd 368 (658)
|+.+++ + + +-...-|..+.+. ..+|||++-|..++- ++..+.|+.+.+. ...|
T Consensus 172 eL~~~Y---P----~--------lt~keRE~~i~ke-~gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGD 235 (330)
T 12as_A 172 ELLSRY---P----D--------LDAKGRERAIAKD-LGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGD 235 (330)
T ss_dssp HHHHHS---S----S--------SCHHHHHHHHHHH-HSEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEE
T ss_pred HHHHHc---C----C--------CChHHHHHHHHHh-hCCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccce
Confidence 998763 2 1 1112223333322 469999998865432 3455666666777 8999
Q ss_pred EEe-----CCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCC-CCccceecchhHHHHHHhcccCcchhh
Q psy8087 369 VLF-----PNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHGGYGLGLERVLCWLLNQYHVRDKY 442 (658)
Q Consensus 369 L~~-----~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~-pP~gG~GiGidRL~m~l~g~~~Irdvi 442 (658)
|++ .+..||.+++.| .|++.+.++++..|..+....+|..++..|- |+|.|.|||.+||+|+|++..+|-+|.
T Consensus 236 ilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ 314 (330)
T 12as_A 236 ILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQ 314 (330)
T ss_dssp EEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTS
T ss_pred EEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheee
Confidence 999 456799999999 9999999999999988777889999999995 999999999999999999999999997
Q ss_pred HH
Q psy8087 443 QL 444 (658)
Q Consensus 443 ~f 444 (658)
+=
T Consensus 315 ~s 316 (330)
T 12as_A 315 AG 316 (330)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 34
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.70 E-value=3.2e-17 Score=170.65 Aligned_cols=179 Identities=22% Similarity=0.295 Sum_probs=119.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-c--ccee-eccCCcceeec--cCHHHHH--HHhcccCC---cEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-S--TLFS-LNFFGEPAYLT--QSSQLYL--ETCLPALG---DVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-~--~~F~-~~~~~~~~~L~--~Spqlyl--k~li~g~~---rvfeI~~ 225 (658)
..+|++|...||.||.||.|..... .|. . +.+. .+..+.+++|| .+|.+.. ...+..-+ |+|++|+
T Consensus 78 ~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~ 157 (288)
T 3dsq_A 78 EKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGT 157 (288)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEee
Confidence 5899999999999999999974321 111 1 1221 22334678999 4577652 22222333 8999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADA 301 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea 301 (658)
|||+|..+. .|.+||+|+|++....+ +.++..+++++++.
T Consensus 158 vFR~E~~~~-~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~----------------------------------- 201 (288)
T 3dsq_A 158 CYRKESQGA-QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA----------------------------------- 201 (288)
T ss_dssp EECSCCSSS-CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH-----------------------------------
T ss_pred EEecCCCCC-CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH-----------------------------------
Confidence 999998755 79999999999997652 33343333333322
Q ss_pred HHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeece
Q psy8087 302 IEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGS 381 (658)
Q Consensus 302 ~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~ 381 (658)
.|++. ..|. . | +....+.++|++++|. ||++|+
T Consensus 202 ------LGl~~--------------------------~~~~-~-~------------s~e~~~~~~~l~~~~~-eig~~G 234 (288)
T 3dsq_A 202 ------AGIRE--------------------------FELV-T-E------------SSVVYGDTVDVMKGDL-ELASGA 234 (288)
T ss_dssp ------HTCCC--------------------------CEEE-E-C------------CCCSSCCCEEEEETTE-EEEEEE
T ss_pred ------cCCCC--------------------------cEEe-c-C------------CcceEEEEEEEEeCCE-EEEEEE
Confidence 12110 0000 0 1 0011244689999996 999999
Q ss_pred eccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhH
Q psy8087 382 MRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQ 443 (658)
Q Consensus 382 ~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~ 443 (658)
.+.+..+. +|| .|||+|||||+|||+|+++|.+|||++..
T Consensus 235 v~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 235 MGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp EESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred ecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 77776521 678 48999999999999999999999999853
No 35
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.69 E-value=1.6e-17 Score=173.52 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=90.1
Q ss_pred EecCCCceeEEeecCCccc--------------CchHHHhhhCCcEEEcCCccccccCC------CCccce-eeccCCcc
Q psy8087 141 QLIHPSSYAIVWLGDLKQG--------------GYPPEVSLANGIAKVTPPTLVQTQVE------GGSTLF-SLNFFGEP 199 (658)
Q Consensus 141 ~l~~p~~R~l~lr~~~~~~--------------~~iR~fl~~~gF~EV~TPiL~~~~~e------G~~~~F-~~~~~~~~ 199 (658)
++++ |||++|++..++ ..+|++|.+.||.||+||+|+...+. ++...+ .+.+++..
T Consensus 54 ~l~~---r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 130 (290)
T 3qtc_A 54 ELES---ELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKN 130 (290)
T ss_dssp HHHH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTT
T ss_pred hhhh---HHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCC
Confidence 5566 899999875433 48999999999999999999765331 111112 13456788
Q ss_pred eeec--cCHHHHHHHh--c---ccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHHH
Q psy8087 200 AYLT--QSSQLYLETC--L---PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLIC 265 (658)
Q Consensus 200 ~~L~--~Spqlylk~l--i---~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li~ 265 (658)
++|| +||+|+..+. + .+..|+||||+|||+|+.+ .+|++||||+|+++++.+ +.++..++++++.
T Consensus 131 ~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~-~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~ 204 (290)
T 3qtc_A 131 FCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDG-KEHLEEFTMLVFWQMGSGCTRENLESIITDFLN 204 (290)
T ss_dssp EEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCS-SSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHH
T ss_pred eeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCC-CcCcchheEEEEEEEcCChHHHHHHHHHHHHHH
Confidence 9999 9999995543 3 2368999999999999764 489999999999999874 5555555555443
No 36
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.44 E-value=2.4e-12 Score=136.95 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=76.3
Q ss_pred CchHHHhhhCCcEEEcCCcccccc--------CC--CC---ccceeecc-CC-----------cceeeccCHHHHHHHhc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ--------VE--GG---STLFSLNF-FG-----------EPAYLTQSSQLYLETCL 214 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~--------~e--G~---~~~F~~~~-~~-----------~~~~L~~Spqlylk~li 214 (658)
..||++|...||.||.+|.+.... +. .| ...|.+.. .. ....||++.--.+-+++
T Consensus 108 ~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~llr~l 187 (350)
T 1b7y_A 108 RELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYM 187 (350)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHHHHHH
Confidence 589999999999999999995321 00 01 12233321 11 33456655444444555
Q ss_pred c-c-C-CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 215 P-A-L-GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 215 ~-g-~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
. + . -|+||||+|||+|+.+. +|+|||+|||+++++. |+.|++..++.+++.+
T Consensus 188 ~~~~~piriFEiGrVFR~d~~d~-tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 188 VAHTPPFRIVVPGRVFRFEQTDA-THEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HHCCSSEEEEEEEEEECCCCCCS-SCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCeeEEEeeeEEECCCCCC-CCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 4 3 3 48999999999988765 7999999999999997 8999999888888655
No 37
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.34 E-value=6.5e-12 Score=131.11 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=80.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-cccee----------eccCCcceeeccCHHHHHHHhcc-c----CCcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS----------LNFFGEPAYLTQSSQLYLETCLP-A----LGDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~----------~~~~~~~~~L~~Spqlylk~li~-g----~~rvfeI 223 (658)
..||++|...||.||++|.+... ..+. +..+. .-+.....+||+|.--.+..++. + -.|+|||
T Consensus 60 ~~iR~~l~~~Gf~Ev~~s~l~~~-~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~riFEi 138 (294)
T 2rhq_A 60 EEIEDLFLGLGYEIVDGYEVEQD-YYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICP 138 (294)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEH-HHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEcCcceeee-hhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCccEEEE
Confidence 58999999999999999998532 1000 11110 01222456888888888777776 5 5689999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeec--CCHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAF--LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~--~d~~~~m~~~e~li~~i 267 (658)
|+|||+++.+. +|+|||+|||+++++ .|+.+++..+|.|+..+
T Consensus 139 G~Vfr~d~~d~-~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 139 GKVYRRDSDDA-THSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEECCCCCBT-TBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCEEecCCCCC-CCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999987654 799999999999999 58999999998888755
No 38
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.00 E-value=8.2e-10 Score=116.14 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=71.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--------CCC-cc-ceeeccCCcceeecc--CHHHHHHHhcccC--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--------EGG-ST-LFSLNFFGEPAYLTQ--SSQLYLETCLPAL--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--------eG~-~~-~F~~~~~~~~~~L~~--Spqlylk~li~g~--~rvfeI~~ 225 (658)
..||++|...||.|+.+|.+..... +.. +. .-.+-|.+....||+ ||.+ ++.+..+- -|+|++|+
T Consensus 114 ~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~-lr~l~~~~~pirifeiGr 192 (327)
T 3pco_A 114 DRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQ-IRTMKAQQPPIRIIAPGR 192 (327)
T ss_dssp HHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHH-HHHHTTCCSSCCBCCEEC
T ss_pred HHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHH-HHHHHhCCCCeeEEeecc
Confidence 4899999999999999999843211 111 11 000112234456664 4554 33333343 48999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
|||++ .+ .+|+|+|+|+|...... |+.++...++.+++.++
T Consensus 193 VyR~d-~d-~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 193 VYRND-YD-QTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp CBCSC-CB-TTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEecC-CC-cccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99998 44 58999999999877643 78888888888887664
No 39
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.80 E-value=3.7e-08 Score=108.83 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=38.2
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+|+||+|||+|..+. +|+|||+|+|...... |+.+++.+++.++.
T Consensus 348 iriFeiGrVFR~d~~Da-tHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~ 396 (508)
T 3l4g_A 348 VKYFSIDRVFRNETLDA-THLAEFHQIEGVVADHGLTLGHLMGVLREFFT 396 (508)
T ss_dssp EEEEEEEEEECCSCCCS-SSCSEEEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceEEEEccEEecCCCCC-CcCCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 37999999999998765 8999999999987643 67777777666554
No 40
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.56 E-value=2.3e-09 Score=111.63 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred EEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHH-----HHHHHHHHH
Q psy8087 570 GRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLM-----RSVLLQALR 644 (658)
Q Consensus 570 G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~-----Rs~i~~~iR 644 (658)
|.|-..+++++++|++||++++|++|++|.. ++|... +.. ..++++||||+|++.+.++++. ++++.+.+|
T Consensus 12 ~~~~~~~~~~~~~~~~ei~~~~~~vl~~a~~-~~P~~~-~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir 87 (290)
T 3qtc_A 12 GLVPRGSHGASAPALTKSQTDRLEVLLNPKD-EISLNS-GKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREIT 87 (290)
T ss_dssp ------------CCCCHHHHHHHHHHCCTTC-C----C-CSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CcccCCccccCCCceEEEEhhhhhhhccCCC-CCCCCc-chh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHH
Confidence 3344445567889999999999999999863 334332 222 3499999999999999999999 999999999
Q ss_pred HHhhcCCcEEecCC
Q psy8087 645 AHFADRNYTEVNIE 658 (658)
Q Consensus 645 ~fL~~~gF~EVeTp 658 (658)
++|.++||.||+||
T Consensus 88 ~~l~~~Gf~EV~Tp 101 (290)
T 3qtc_A 88 RFFVDRGFLEIKSP 101 (290)
T ss_dssp HHHHHTTCEEECCC
T ss_pred HHHHHCCCEEEECC
Confidence 99999999999998
No 41
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.98 E-value=6.3e-05 Score=81.71 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=57.8
Q ss_pred CchHHHhhhC--------CcEEEcC-CccccccC--------CCC-cc-ceeeccCCcceeeccC--HHHHHHHhcccCC
Q psy8087 160 GYPPEVSLAN--------GIAKVTP-PTLVQTQV--------EGG-ST-LFSLNFFGEPAYLTQS--SQLYLETCLPALG 218 (658)
Q Consensus 160 ~~iR~fl~~~--------gF~EV~T-PiL~~~~~--------eG~-~~-~F~~~~~~~~~~L~~S--pqlylk~li~g~~ 218 (658)
..||++|... ||.|+.+ |.|..... ... +. .--+-|.+...-||.+ |-+..- |-.+..
T Consensus 55 ~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~-l~~~~~ 133 (415)
T 3cmq_A 55 ERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL-LHAGLD 133 (415)
T ss_dssp HHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH-HHTTCS
T ss_pred HHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH-HHHCCC
Confidence 5899999887 9999999 76642211 110 11 0001133455677654 444322 223567
Q ss_pred cEEEEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 219 DVYCIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
|+|++|.|||.+..++ .|.|+|.|+|--.-|
T Consensus 134 k~~~~G~VyR~D~~da-~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 134 AFLVVGDVYRRDQIDS-QHYPIFHQLEAVRLF 164 (415)
T ss_dssp EEEEEEEEECCCCCBT-TBCSEEEEEEEEEEE
T ss_pred CEEEeeeEEeccchhh-hhhHHhcCCCcEEEE
Confidence 9999999999998876 899999999965554
No 42
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.77 E-value=8e-05 Score=82.71 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=38.0
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+||||+|||.+......|.+||+|++..+... |+.|+..+++.++.
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3799999999987641237999999999999884 67777777776664
No 43
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.76 E-value=7.4e-05 Score=81.56 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=70.2
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----C----CCCccceeeccCCcceeeccCHHHHHHHh-----cc-c-C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----V----EGGSTLFSLNFFGEPAYLTQSSQLYLETC-----LP-A-L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~----eG~~~~F~~~~~~~~~~L~~Spqlylk~l-----i~-g-~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|.... + ..+.+.|++. +.++||+-..+.-+=.+ .. . + -|+|++
T Consensus 180 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~ 257 (425)
T 2dq3_A 180 NFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAY 257 (425)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEe
Confidence 578888899999999999997543 1 1122345443 67889986666543333 22 1 2 489999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||+|..... + -.-||+|.|++. |.+-++..+..++++..+.
T Consensus 258 g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 258 TPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp EEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred cCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 999999975311 1 124999999976 5555666666666665443
No 44
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.68 E-value=6.9e-05 Score=81.17 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
+.+|+.|...||.||.||+|..... .|. .+.|..+--|..++|+-..+...=++.. . + -|+|+|
T Consensus 38 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~ 117 (401)
T 1evl_A 38 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 117 (401)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccc
Confidence 5789999999999999999965420 121 2345544446789999776654433322 1 2 489999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|||+|... .+| .-||+|+|+| .|.+.+++....++++..
T Consensus 118 g~~fR~E~~~-p~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~e~i~~ 162 (401)
T 1evl_A 118 GSCHRNEPSG-SLHGLMRVRGFTQDDAH-IFCTEEQIRDEVNGCIRL 162 (401)
T ss_dssp EEEECCCCGG-GCBTTTBCSEEEEEEEE-EEECGGGHHHHHHHHHHH
T ss_pred cceecCCCCc-ccccccccCcEEecceE-EeCCHHHHHHHHHHHHHH
Confidence 9999999851 122 3699999999 577766665555555543
No 45
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.59 E-value=0.00018 Score=79.80 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=72.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+|+.|...||.||.||+|.+... ++| .+.|.+..- +..++||--.+ +|.+.+.. .+
T Consensus 52 ~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 131 (477)
T 1hc7_A 52 QVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLP 131 (477)
T ss_dssp HHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCC
Confidence 5789999999999999999975431 122 234543322 56899986665 45555443 23
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI 264 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li 264 (658)
-|+|+||+|||+|..-.. |- -||+|.|+|..+.+.+++...+..++
T Consensus 132 ~rl~qig~vfR~E~~~rGl~R~-REF~q~d~~~~~~~~~~ad~E~~~~l 179 (477)
T 1hc7_A 132 QLLNQWGNVVRWEMRTRPFLRT-SEFLWQEGHTAHATREEAEEEVRRML 179 (477)
T ss_dssp EEEEEEEEEECCCSSCBTTTBC-SEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeeEeecCEEeCCCCCCCccee-EEEEEccEEEEeCCHHHHHHHHHHHH
Confidence 489999999999943111 22 49999999999999888776666654
No 46
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.49 E-value=0.00027 Score=77.92 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=67.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCH-----HHHHHHhccc--C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSS-----QLYLETCLPA--L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Sp-----qlylk~li~g--~-~rvfe 222 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.+ +--|..++|+... .++...+... + -|+|+
T Consensus 75 ~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ 154 (458)
T 2i4l_A 75 QIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYH 154 (458)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEE
T ss_pred HHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEE
Confidence 5889999999999999999965321 122 234543 3346789998632 3333332221 2 58999
Q ss_pred EeeeeecC-CCCCc-cCcceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 223 IAQSYRAE-NSRTR-RHLAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 223 I~~~FR~E-~~~~~-rHl~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
||+|||+| ..... --..||+|+|+|.-..+..++-..+..+
T Consensus 155 ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 155 IQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp EEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 99999999 32111 0236999999999877766654444433
No 47
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.44 E-value=0.00031 Score=77.41 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=69.6
Q ss_pred CchHHHh-hhCCcEEEcCCccccccC---CCC-----ccceeecc---CCcceeeccCHHHHHHHhccc-------C-Cc
Q psy8087 160 GYPPEVS-LANGIAKVTPPTLVQTQV---EGG-----STLFSLNF---FGEPAYLTQSSQLYLETCLPA-------L-GD 219 (658)
Q Consensus 160 ~~iR~fl-~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~---~~~~~~L~~Spqlylk~li~g-------~-~r 219 (658)
+.+|+.+ .+.||.||.||+|..... .|. .+.|.+.. -+..++|+--.+.-.=++... + -|
T Consensus 72 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlr 151 (460)
T 3uh0_A 72 EFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLR 151 (460)
T ss_dssp HHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEE
T ss_pred HHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeE
Confidence 5888999 999999999999964321 122 23454332 256789986554333333221 2 37
Q ss_pred EEEEeeeeecCCCCC--c-cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 220 VYCIAQSYRAENSRT--R-RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 220 vfeI~~~FR~E~~~~--~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+|++|+|||+|.... . .-.-||+|.|++. |.+-+++.+.+++++..+..
T Consensus 152 l~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 152 FSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp EEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred EEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 999999999998631 1 0124999999995 67767777776666655443
No 48
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.36 E-value=0.0005 Score=77.86 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCHH-----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfe 222 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.+ +--|..++||--.+ +|...+.. -+ -|+|+
T Consensus 55 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~ 134 (572)
T 2j3l_A 55 TIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQ 134 (572)
T ss_dssp HHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhhe
Confidence 5789999999999999999965421 121 234543 33467899975543 34443322 12 38999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
||+|||+|.. . +| .-||+|.|+|.-..+..++...++.+
T Consensus 135 ~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 135 IQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp EEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 9999999986 2 33 25999999999877766665555553
No 49
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=0.0011 Score=73.51 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++.
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~-th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~ 267 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDR-SHLMSYHSASCVVVGEDVSVDDGKVVAEGLLA 267 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSS-SCCSCEEEEEEEEECTTCCHHHHHHHHHHHHG
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccC-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 34654 46555552 222 32 379999999998764 43 6999999999998875 67777777766664
No 50
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.34 E-value=0.00091 Score=72.81 Aligned_cols=106 Identities=14% Similarity=0.248 Sum_probs=71.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|..... .|. .+.|++. +.++||+-..+-.+-.+... + -|+|++
T Consensus 174 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~ 251 (421)
T 1ses_A 174 RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY 251 (421)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCchhCCEEEEec
Confidence 5788888899999999999964321 121 2344433 46789998877666555431 2 379999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCC-HHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLT-FDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d-~~~~m~~~e~li~~i 267 (658)
|+|||+|-+... + -.-||+|.|++..... .++..+..++++..+
T Consensus 252 g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 252 APAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999953110 1 1249999999886555 577777777766543
No 51
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.34 E-value=0.00035 Score=80.37 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=70.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCC-cceeeccCHHHHHHHhcc-c------C-CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFG-EPAYLTQSSQLYLETCLP-A------L-GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~-~~~~L~~Spqlylk~li~-g------~-~rvf 221 (658)
+.+|+.+.+.||.||.||+|..... .|. .+.|.+ +--| ..++|+--..-..=++.. . + -|+|
T Consensus 279 ~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~ 358 (645)
T 1nyr_A 279 RYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIA 358 (645)
T ss_dssp HHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEE
Confidence 5789999999999999999964421 122 134432 3346 788998654443333222 1 2 4899
Q ss_pred EEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+||+|||+|.+.. +| .-||||.|+|. |.+.+.+.+...+++..+
T Consensus 359 ~~g~~fR~E~~~~-~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~ 406 (645)
T 1nyr_A 359 ELGTMHRYEASGA-VSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 406 (645)
T ss_dssp EEEEEECCCCTTT-CBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EeccEEecCCCcc-ccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 9999999998742 33 26999999998 777666666555555433
No 52
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.32 E-value=0.00034 Score=76.92 Aligned_cols=103 Identities=18% Similarity=0.306 Sum_probs=72.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|..... .|.. +.|++. +.++||+-..+.-+=.+... + -|+|++
T Consensus 201 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~ 278 (455)
T 2dq0_A 201 RFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGV 278 (455)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEe
Confidence 5778888889999999999975421 2322 234332 56889997777655544331 2 379999
Q ss_pred eeeeecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
|+|||+|.... +-| ||+|.|++ .|.+-++..+..++++..+
T Consensus 279 g~~FR~E~~~~G~~~~GL~R~r--qF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 279 SPCFRKEAGTAGKDTKGIFRVH--QFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp EEEECCCTTCSSCSCCSSSSCS--EEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred cCcccCCCCccccccCCceeee--eeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 99999997522 224 99999999 6776688887777777544
No 53
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.31 E-value=9.3e-05 Score=78.51 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.0
Q ss_pred eeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 623 MIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 623 dLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..|++ .+++|++||+|+++||+||+++||+|||||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTP 61 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETP 61 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 44555 789999999999999999999999999999
No 54
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.31 E-value=0.00018 Score=78.21 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=57.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc----c-----CCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP----A-----LGD 219 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~----g-----~~r 219 (658)
+.+|+.|...||.||.||+|..... . |+ .+.|.+ +.-|..++||--.....=+++. . --|
T Consensus 24 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r 103 (420)
T 1qe0_A 24 NQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIK 103 (420)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEE
T ss_pred HHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccccccCCCCeE
Confidence 5789999999999999999965321 1 22 134443 2235678887543333322221 1 248
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|++|+|||+|.... -+.-||+|+|+|.-..+
T Consensus 104 ~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 104 LYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp EEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred EEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 999999999997654 35679999999998775
No 55
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.30 E-value=0.00045 Score=76.02 Aligned_cols=105 Identities=13% Similarity=0.233 Sum_probs=73.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc--CC--------cEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA--LG--------DVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g--~~--------rvf 221 (658)
+.+++.+.+.||.||.||.|..... .|- .+.|.+.--+.++||.-..|.-+=.+... +. |+|
T Consensus 193 ~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~ 272 (485)
T 3qne_A 193 NYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYA 272 (485)
T ss_dssp HHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEE
Confidence 4777888889999999999975431 121 23454432256789987777666555442 23 599
Q ss_pred EEeeeeecCCCC--------CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSR--------TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~--------~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
++++|||+|... -+-| ||+|.|.+. |.+-++..+..++|+...
T Consensus 273 ~~s~cfR~Eag~~Grdt~GL~Rvh--qF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 273 GYSSCFRREAGSHGKDAWGIFRVH--AFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp EEEEEECSCCC-----CCSSSSCS--EEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EecccccCCCCCCCccCCCceeee--eeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 999999999642 1234 999999997 677788888777777544
No 56
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.28 E-value=0.00054 Score=76.36 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=73.1
Q ss_pred CchHHHhhhCCcEEEcCCcccccc-CC--CC------ccceeeccC-----CcceeeccCHHHH-----HHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ-VE--GG------STLFSLNFF-----GEPAYLTQSSQLY-----LETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~-~e--G~------~~~F~~~~~-----~~~~~L~~Spqly-----lk~li~--g~- 217 (658)
+.+|+.|.+ ||.||.||+|.... -. .| .+.|.+..- +.+++|+--.+.- .+.+.. -+
T Consensus 79 ~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LP 157 (501)
T 1nj1_A 79 KILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 157 (501)
T ss_dssp HHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCC
T ss_pred HHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCC
Confidence 578899988 99999999997543 11 11 234544332 4678998666543 333332 12
Q ss_pred CcEEEEeeeeecCCCCC-c--cCcceee-eeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R--RHLAEYT-HVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|..++ . | .-||+ |.|++..+.+.++....+++++...
T Consensus 158 lr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~ 210 (501)
T 1nj1_A 158 MRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVEIY 210 (501)
T ss_dssp EEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHHHH
Confidence 38999999999998622 1 1 13999 9999999999888887777766533
No 57
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.23 E-value=0.00086 Score=71.11 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=58.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-----CC-----Cccceee-ccCCcceeeccCHHHHHHHhcc-c----CCcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-----EG-----GSTLFSL-NFFGEPAYLTQSSQLYLETCLP-A----LGDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-----eG-----~~~~F~~-~~~~~~~~L~~Spqlylk~li~-g----~~rvfeI 223 (658)
+.+|+.|...||.||.||+|..... +| ..+.|+. +--|..+.||--.-.-.=++++ . --|.|+|
T Consensus 44 ~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~P~rl~y~ 123 (344)
T 1z7m_A 44 GRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYF 123 (344)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCCSCCCEEEEEE
T ss_pred HHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcCCCCCeEEEEE
Confidence 5789999999999999999954311 02 1245543 3456778887422222222222 1 2489999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|++||+|.... -+.-||+|+++|.-..+
T Consensus 124 g~vfR~e~p~~-gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 124 GKIFRKEKRHK-GRSTENYQIGIELFGES 151 (344)
T ss_dssp EECCCCCC--------CCEEEEEEEESSC
T ss_pred CcEEccCCCCC-CCcceeEEEEEEEEcCC
Confidence 99999997654 36689999999998765
No 58
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.19 E-value=0.0015 Score=73.30 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
No 59
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.18 E-value=0.0016 Score=73.22 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
No 60
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.17 E-value=0.0016 Score=73.21 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.4
Q ss_pred eeecc--CHHHHHH--Hhcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLE--TCLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk--~li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+ .+.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 4655544 2222 32 479999999998764 43 7999999999998875 677877777776653
No 61
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.15 E-value=0.0017 Score=73.14 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (701)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
No 62
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.15 E-value=0.00066 Score=75.61 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=74.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeecc-----CCcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNF-----FGEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~-----~~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+|+.+.+.||.||.||+|.+... +.| .+.|.+.. .+.+++|+-..+ +|.+.+.. -+
T Consensus 63 ~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLP 142 (518)
T 3ial_A 63 RLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLP 142 (518)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCC
Confidence 5788889999999999999965431 122 23454432 246899986665 34444333 13
Q ss_pred CcEEEEeeeeecCCCCC-c-cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R-RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|-..+ . --.-||+|.|.+....+.+++.+.++.++...
T Consensus 143 lrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 143 LKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp EEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 47999999999994312 1 01249999999998899999888888877543
No 63
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.00093 Score=74.53 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCCCc-----cceeeccC-----CcceeeccCHHH-----HHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEGGS-----TLFSLNFF-----GEPAYLTQSSQL-----YLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG~~-----~~F~~~~~-----~~~~~L~~Spql-----ylk~li~--g~- 217 (658)
+.+|+.+.+.||.||.||+|.... ..|.. +.|.+..- +.+++|+--.+- |.+.+.. -+
T Consensus 69 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLP 148 (519)
T 4hvc_A 69 DFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLP 148 (519)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCC
T ss_pred HHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCC
Confidence 578888899999999999996442 11322 23322211 235888755443 4444433 13
Q ss_pred CcEEEEeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|-..++ | .-||+|.|.+..|.+.++..+.++.++...
T Consensus 149 lrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 149 IKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp EEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 489999999999943221 1 139999999999999999988888877543
No 64
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.11 E-value=0.0016 Score=71.09 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=64.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC---Cccceee-ccCCcceeeccCHHHHHHHhcc-c----C-CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG---GSTLFSL-NFFGEPAYLTQSSQLYLETCLP-A----L-GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG---~~~~F~~-~~~~~~~~L~~Spqlylk~li~-g----~-~rvfeI~~ 225 (658)
+.+|+-|...||.||.||+|..... .| +.+.|.+ +--|..+.||--.-.-.=++.+ . + -|.|+||+
T Consensus 28 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~ 107 (434)
T 1wu7_A 28 KTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPK 107 (434)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCE
T ss_pred HHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcC
Confidence 5789999999999999999964321 12 1345654 4456778887533333333332 1 2 48999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+||+|..... +.-||+|+++|.-..+
T Consensus 108 vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 108 VWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp EECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred eecCCCCCCC-CccceEEeeEEEEcCC
Confidence 9999976554 4579999999998775
No 65
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.09 E-value=0.0007 Score=74.54 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=71.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.++||.||.||.|..... .|- .+.|++.--+.++||.-..|..+=.+... + =|+|++
T Consensus 216 ~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~ 295 (484)
T 3lss_A 216 SYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGM 295 (484)
T ss_dssp HHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEee
Confidence 5778888889999999999975421 121 13455543357899988877766444332 2 359999
Q ss_pred eeeeecCCC-CC-------ccCcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 224 AQSYRAENS-RT-------RRHLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~-~~-------~rHl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
++|||+|.. .+ +-| ||+|.|.+. |..-++ ..+..++|+...
T Consensus 296 s~cFR~Eags~Grdt~GL~Rvr--qF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 296 STCFRKEAGAHGRDTLGIFRVH--QFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp EEEECCCTTCSSSCCSTTSSCS--EEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred cCccCCCCCcCCcccCCcceee--eEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 999999963 21 224 999999984 555555 777777776543
No 66
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.09 E-value=0.0013 Score=72.50 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=72.2
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCC-----CccceeeccC-----CcceeeccCHHHHH-----HHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEG-----GSTLFSLNFF-----GEPAYLTQSSQLYL-----ETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG-----~~~~F~~~~~-----~~~~~L~~Spqlyl-----k~li~--g~- 217 (658)
+.+|+.|...||.||.||+|.... ..| +.+.|.+..- +..++||--.+--. +.+.. .+
T Consensus 46 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 125 (459)
T 1nj8_A 46 EIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLP 125 (459)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCC
T ss_pred HHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCC
Confidence 588999999999999999996532 112 1245554332 56789986655433 22222 12
Q ss_pred CcEEEEeeeeecCCCCC-c--cCcceee-eeeeEeecCCHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R--RHLAEYT-HVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
-|+|+||+|||+|.... . | .-||+ |.|.+..+.+.++.....++++.
T Consensus 126 ~rl~qig~~fR~E~~~~rGl~R-~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 126 IKIYQIVNTFRYETKHTRPLIR-LREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp CCEEEEECCBCCCCSCCBTTTB-CSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEEccEecCccCCCCCceE-eeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 48999999999997621 1 2 24999 99999999998887776555554
No 67
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.06 E-value=0.00049 Score=76.62 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=69.9
Q ss_pred CchHH-HhhhCCcEEEcCCccccccC---CCCc-----cceee---c--c--------------------------CCcc
Q psy8087 160 GYPPE-VSLANGIAKVTPPTLVQTQV---EGGS-----TLFSL---N--F--------------------------FGEP 199 (658)
Q Consensus 160 ~~iR~-fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~---~--~--------------------------~~~~ 199 (658)
+.+++ ++.+.||.||.||+|.+... .|.. +.|.+ . . -+.+
T Consensus 239 ~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (522)
T 2cja_A 239 KIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPI 318 (522)
T ss_dssp HHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCC
T ss_pred HHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCc
Confidence 46675 57788999999999964321 1211 23433 1 1 1457
Q ss_pred eeeccCHHHHHH-----Hhccc--C-CcEEE-EeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 200 AYLTQSSQLYLE-----TCLPA--L-GDVYC-IAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 200 ~~L~~Spqlylk-----~li~g--~-~rvfe-I~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+||+-..+.-.= ..... + -|+|+ +|+|||+| ..+. --.-||+|.|++. |.+.++..+..++++...
T Consensus 319 l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~ 396 (522)
T 2cja_A 319 GGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRY 396 (522)
T ss_dssp EEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHH
T ss_pred EEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHH
Confidence 888865543322 22221 2 27999 99999999 4310 1124999999998 788888888888888444
Q ss_pred HHHH
Q psy8087 268 VDRV 271 (658)
Q Consensus 268 ~~~~ 271 (658)
...+
T Consensus 397 ~~~~ 400 (522)
T 2cja_A 397 MHIF 400 (522)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 68
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.05 E-value=0.0026 Score=70.45 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=74.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cc-cceeeccC-CcceeeccCHHHHHHHhccc-------C-CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GS-TLFSLNFF-GEPAYLTQSSQLYLETCLPA-------L-GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~-~~F~~~~~-~~~~~L~~Spqlylk~li~g-------~-~rvf 221 (658)
+.+++.+.+.||.||.||.|..... .| +. +.|++.-- +.++||+-..|..+=.+... + =|+|
T Consensus 227 ~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~ 306 (501)
T 1wle_A 227 NFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMV 306 (501)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEE
Confidence 5778888899999999999975421 11 22 45654322 45799998877655433321 2 3799
Q ss_pred EEeeeeecCCCC-------CccCcceeeeeeeEeecCCH-HHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSR-------TRRHLAEYTHVEAECAFLTF-DDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~-------~~rHl~EFt~lE~e~a~~d~-~~~m~~~e~li~~i 267 (658)
++++|||+|-.. -+-| ||+|.|.+.--.+. ++..+..++|+...
T Consensus 307 ~~s~~FR~Ea~~G~d~~GL~Rvh--qF~kvE~~~f~~pe~e~s~~~~e~~l~~~ 358 (501)
T 1wle_A 307 CSSTCYRAETDTGKEPWGLYRVH--HFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358 (501)
T ss_dssp EEEEEECCCCSCC--CCSSSSCS--EEEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eccCcccCCCCCCCCCcCceeee--eeeeeeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 999999999651 1224 99999999866654 78888888877544
No 69
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.05 E-value=0.0021 Score=71.32 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=69.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceeecc---------CCcceeeccCHHHHHHHhccc------
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNF---------FGEPAYLTQSSQLYLETCLPA------ 216 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~---------~~~~~~L~~Spqlylk~li~g------ 216 (658)
+.+++.+.+.||.||.||.|..... .| +.+.|.+.- -+.++||+-..|.-+=.+...
T Consensus 209 ~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~ 288 (522)
T 3vbb_A 209 QYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPE 288 (522)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTT
T ss_pred HHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccc
Confidence 5778888899999999999964421 11 123455432 245799998777766444332
Q ss_pred -C-CcEEEEeeeeecCCCCC-------ccCcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 217 -L-GDVYCIAQSYRAENSRT-------RRHLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 217 -~-~rvfeI~~~FR~E~~~~-------~rHl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
+ =|+|++++|||+|.... -| .-||+|.|.+. |..-++ ..+..++|+...
T Consensus 289 dLPlr~~~~s~cFR~Eags~GrdtrGL~R-vhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 289 DLPIKYAGLSTCFRQEVGSHGRDTRGIFR-VHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TCCEEEEEEEEEECSCCCC----CCCSSS-CSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred cCCeeEEEecccccCCCCcCCccCCCcce-eeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 1 35999999999997421 12 23999999985 554433 777777776543
No 70
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.01 E-value=0.0013 Score=75.52 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
+.+|+.+.+.||.||.||+|..... .|. .+.|..+--+.+++|+--.+-..=++.. + + -|+|+|
T Consensus 279 ~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~ 358 (642)
T 1qf6_A 279 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 358 (642)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEe
Confidence 5788999999999999999965421 122 2345544446788998655443222221 1 2 389999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|||+|.+. .+| .-||||.|+|. |.+.+++....++++..
T Consensus 359 g~~fR~E~~g-~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 359 GSCHRNEPSG-SLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp EEEECCCCGG-GCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccEEecCCCc-cccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 9999999862 122 24999999998 77766665555555543
No 71
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=96.98 E-value=0.0011 Score=73.13 Aligned_cols=91 Identities=11% Similarity=0.190 Sum_probs=55.8
Q ss_pred CchHHHhhhCCcEEEcCCccccc-----cCCCCcc-ceeeccC----------------CcceeeccCHHH-----HHHH
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT-----QVEGGST-LFSLNFF----------------GEPAYLTQSSQL-----YLET 212 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~-----~~eG~~~-~F~~~~~----------------~~~~~L~~Spql-----ylk~ 212 (658)
+.+|+.|...||.||+||++-.. ..+...+ .|....- |..+.||----. +.+.
T Consensus 34 ~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~ 113 (465)
T 3net_A 34 DTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARH 113 (465)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCChHHHHHHHHhc
Confidence 57899999999999999998221 1122234 6644222 567888732222 2222
Q ss_pred hcc-cC-CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 213 CLP-AL-GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 213 li~-g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
... .+ -|.|++|+|||.|.... -+.-||+|+++|.-..
T Consensus 114 ~~~~~~p~r~~y~g~vfR~e~~~~-gr~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 114 LNDLTFPFARYQMDVVFRGERAKD-GRFRQFRQCDIDVVGR 153 (465)
T ss_dssp GGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECS
T ss_pred ccccCCCeEEEEeccEEecCCCCC-CCcceeEEeeEEEECC
Confidence 211 12 39999999999997654 3557999999998775
No 72
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=96.94 E-value=0.0018 Score=71.58 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=60.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccC-CcceeeccCHHHHHHHhcc--c-----CCcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFF-GEPAYLTQSSQLYLETCLP--A-----LGDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~-~~~~~L~~Spqlylk~li~--g-----~~rv 220 (658)
+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |..+.||--.-...=++++ . --|.
T Consensus 54 ~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~ 133 (467)
T 4e51_A 54 ATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133 (467)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTTSCEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccCCCEEE
Confidence 5789999999999999999964321 1 32 235644 334 6778888433222223222 1 2489
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|++|+|||+|..... +.-||||+++|.-..+
T Consensus 134 ~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 134 WYIGPMFRHERPQRG-RYRQFHQVGVEALGFA 164 (467)
T ss_dssp EEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred EEEccEEccCCCCCC-CcCceEEEEEEEEeCC
Confidence 999999999987553 4569999999986653
No 73
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=96.93 E-value=0.0024 Score=69.07 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=59.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC---Cccceee-ccCCcceeeccCHHHHHHHhcc------c-CCcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG---GSTLFSL-NFFGEPAYLTQSSQLYLETCLP------A-LGDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG---~~~~F~~-~~~~~~~~L~~Spqlylk~li~------g-~~rvfeI~~ 225 (658)
+.+|+.|...||.||.||+|..... .| ..+.|.+ +--|..+.||--.-.-.=++++ . --|.|++|+
T Consensus 32 ~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~ 111 (400)
T 3od1_A 32 DQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSN 111 (400)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSCSCEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCCCCeEEEEEcC
Confidence 5789999999999999999943221 01 2345644 3346677777321111112221 1 248999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|||+|.... -+.-||+|+++|.-..+
T Consensus 112 vfR~e~~~~-gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 112 VYRAQQNEG-GKPAEFEQLGVELIGDG 137 (400)
T ss_dssp EECCCC----CCCSEEEEEEEEEESCC
T ss_pred EEeCCCCCC-CCCCccEEeEEEEECCC
Confidence 999997654 35579999999987664
No 74
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=96.89 E-value=0.0023 Score=69.53 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=62.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc--cC------CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP--AL------GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~--g~------~rv 220 (658)
+.+|+-|...||.||.||+|..... . |. .+.|.+ +--|..+.||--.-...=++.+ .. -|.
T Consensus 25 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl 104 (421)
T 1h4v_B 25 ATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRL 104 (421)
T ss_pred HHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccccccCCCeEE
Confidence 5889999999999999999964321 1 22 145544 3446778887422222222221 12 489
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecCCH
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTF 253 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~ 253 (658)
|+||++||+|..... +.-||+|+++|.-..+-
T Consensus 105 ~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~~ 136 (421)
T 1h4v_B 105 WMAGPMFRAERPQKG-RYRQFHQVNYEALGSEN 136 (421)
T ss_pred EEecCeecCCCCCCC-CcccEEEccEEEECCCC
Confidence 999999999976544 45799999999977653
No 75
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.88 E-value=0.0021 Score=68.90 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=57.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC---C-ccceee-ccCCcceeeccC--HHHH---HHHhcc--cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG---G-STLFSL-NFFGEPAYLTQS--SQLY---LETCLP--ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG---~-~~~F~~-~~~~~~~~L~~S--pqly---lk~li~--g~~rvfeI~ 224 (658)
..+|+.|...||.||.||+|..... .| . .+.|.. +--|..+.||-- |.+. ...+-. .--|.|+||
T Consensus 45 ~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g 124 (373)
T 3rac_A 45 TRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCE 124 (373)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEc
Confidence 5889999999999999999953321 11 2 345543 333667777632 2211 111111 136899999
Q ss_pred eeeecCCC------CCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENS------RTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~------~~~rHl~EFt~lE~e~a~~d 252 (658)
++||+|.. .. -+.-||+|+++|.-..+
T Consensus 125 ~vfR~e~~g~~~~~~~-gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 125 RVYRRTDDPASLSWAS-GKAAESTQVGIERIGEE 157 (373)
T ss_dssp EEEECC-------------CEEEEEEEEEECSSC
T ss_pred ceEccCCCcccccccC-CccceeEEeeeEEECCC
Confidence 99999976 33 35679999999986654
No 76
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=96.81 E-value=0.0024 Score=70.50 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=68.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHH-----HHHhcc-----cC-CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLY-----LETCLP-----AL-GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqly-----lk~li~-----g~-~rv 220 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.++.-|..++||--.+.- .+.+-. -+ -|+
T Consensus 57 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl 136 (471)
T 3a32_A 57 EVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKV 136 (471)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEE
T ss_pred HHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEE
Confidence 5788899999999999999965421 232 2456555456789998554433 332211 12 489
Q ss_pred EEEeeeeecCCCC--Cc-cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 221 YCIAQSYRAENSR--TR-RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 221 feI~~~FR~E~~~--~~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|+||+|||+|... .. --.-||+|.|+|.-. +.++..+.+.+++.
T Consensus 137 ~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~-~~~~~~de~~e~i~ 183 (471)
T 3a32_A 137 FEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV-PGGRVIDVVYDVFE 183 (471)
T ss_dssp EEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-EGGGHHHHHHHHHH
T ss_pred eeccceeccCCCcccccceeEEEEEECCeEEEc-ChHHHHHHHHHHHH
Confidence 9999999999753 11 012499999999864 44445554444443
No 77
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=96.79 E-value=0.0032 Score=70.44 Aligned_cols=105 Identities=14% Similarity=0.258 Sum_probs=70.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----CccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+|+.+.+.||.||.||.|..... .| +.+.|++. +.++||.-..|.-+=.+... + =|+|++
T Consensus 283 ~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~ 360 (536)
T 3err_A 283 RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY 360 (536)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEe
Confidence 5778888899999999999964421 11 22345543 36789987776654443321 2 369999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCH--HHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTF--DDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~--~~~m~~~e~li~~i 267 (658)
++|||+|..... + -.-||||.|.+. |..- ++..+..++++...
T Consensus 361 ~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 361 APAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred cccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 999999963211 1 234999999995 5543 48888777777544
No 78
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.73 E-value=0.0038 Score=67.79 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=63.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc--c-----CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP--A-----LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~--g-----~~rvf 221 (658)
+.+|+-|...||.||.||+|..... . |. .+.|.+ +--|..+.||--.-...=++.+ . --|.|
T Consensus 26 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~ 105 (423)
T 1htt_A 26 GTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLW 105 (423)
T ss_dssp HHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTCSTTCCEEEE
T ss_pred HHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhcccccCCCeEEE
Confidence 5889999999999999999964321 1 22 245654 3456778887422222222222 1 24899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCCH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTF 253 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~ 253 (658)
+||++||+|..... +.-||+|+++|.-..+-
T Consensus 106 ~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 106 YIGPMFRHERPQKG-RYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp EEEEEECCCCCCSS-CCSEEEEEEEEEESCCS
T ss_pred EEcCEecCCCCCCC-ccceeEEeeEEEECCCC
Confidence 99999999976554 45799999999987653
No 79
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=96.63 E-value=0.0052 Score=62.97 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=57.6
Q ss_pred chH--HHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeecc--CHHHHHHHhcc-c-C-CcEEEEeeeeecCCCC
Q psy8087 161 YPP--EVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQ--SSQLYLETCLP-A-L-GDVYCIAQSYRAENSR 233 (658)
Q Consensus 161 ~iR--~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~--Spqlylk~li~-g-~-~rvfeI~~~FR~E~~~ 233 (658)
.+| +.|...||.||.||+|-....=.. +.| .+--|..+.||- .|.+-...+-. . . -|.|++|+|||.|.+.
T Consensus 9 ~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~ 86 (275)
T 1usy_A 9 VFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD 86 (275)
T ss_dssp HHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE
T ss_pred HHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCCCC
Confidence 445 999999999999999964332111 234 234467777872 23333222221 2 2 4899999999999864
Q ss_pred CccCcceeeeeeeEeecCC
Q psy8087 234 TRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 234 ~~rHl~EFt~lE~e~a~~d 252 (658)
. -||||+++|.-..+
T Consensus 87 ~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 87 L----VAEYQLGLEKVPRN 101 (275)
T ss_dssp E----EEEEEEEEEEESCC
T ss_pred C----CeeeEeCEEEecCC
Confidence 3 69999999997663
No 80
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.59 E-value=0.014 Score=51.54 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=66.3
Q ss_pred eecccCCccCCcEEEEEEEEEee---e----cCC--CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL---R----RQG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~---R----~~G--kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.+|.++. .|+.|.+.|.|.++ | ..| +++.++.|.|++|.|.+.+-..... ....|..|++|.|+|.+
T Consensus 8 ~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~--~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 8 DTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK--LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp CCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG--GGGTCCTTSEEEEEEEE
T ss_pred EEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh--hhhcCCCCCEEEEEeeE
Confidence 4466554 58899999999988 2 345 5789999999999999988654322 23579999999999988
Q ss_pred EecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 573 EKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 573 ~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
.+.. =.|.++|.+.....+.+++
T Consensus 84 v~~~----f~g~~qL~~~~~~~i~~~~ 106 (115)
T 2k50_A 84 IRGG----FGGRKEAHLMPRSTVEVLD 106 (115)
T ss_dssp ECCC----SSSSCEEEECTTCCEEEES
T ss_pred Eccc----cCCeEEEEECCCceEEECC
Confidence 5431 1467888887776666653
No 81
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.53 E-value=0.0058 Score=67.22 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC---ccceee-ccCCcceeeccCHHHHHHHhcc--c-----CCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG---STLFSL-NFFGEPAYLTQSSQLYLETCLP--A-----LGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~---~~~F~~-~~~~~~~~L~~Spqlylk~li~--g-----~~rvfeI~ 224 (658)
..+|+.|...||.||.||+|..... . |. .+.|.. +--|..+.||--.-.-.=++++ . --|.|+||
T Consensus 51 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g 130 (456)
T 3lc0_A 51 DVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIP 130 (456)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECC
T ss_pred HHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCcccCCCEEEEEec
Confidence 5789999999999999999854432 1 22 235543 3346677777322111222222 1 24799999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|||+|.... -+.-||+|+++|.-..+
T Consensus 131 ~vfR~e~~~~-gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 131 QCWRYEAITR-GRRREHYQWNMDIVGVK 157 (456)
T ss_dssp EEECCCC------CCEEEEEEEEEESCC
T ss_pred cEEecCCCCC-CCccceEEEEEEEEcCC
Confidence 9999998755 35679999999987653
No 82
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.46 E-value=0.0072 Score=67.32 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.5
Q ss_pred CcEEEEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
=|+|+||+|||+|-. + +| .=||+|.|+| .|.+.++..+..++++....
T Consensus 210 ~rl~qig~~FR~E~~-p-r~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 210 FGIAQIGKAFRNEIT-P-RNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEEEEEEEEEBCCSS-C-CTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCC-C-CCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 379999999999932 2 32 2499999999 88888888777776665443
No 83
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.08 E-value=0.14 Score=44.57 Aligned_cols=88 Identities=25% Similarity=0.243 Sum_probs=65.3
Q ss_pred eeecccCCccCCcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEE
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLR-------RQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGR 571 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R-------~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~ 571 (658)
+.+|.++.. +..|.|.|+|.++. ..|+ ++.=+.|.|++|.|.+++=.+... . .+.+||+|.|.|.
T Consensus 5 ~~~I~dL~~--~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~---~-~l~~Gdvv~i~g~ 78 (105)
T 3dm3_A 5 TYNIGELSP--GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD---I-DVGRGDYVRVRGY 78 (105)
T ss_dssp EECGGGCCS--SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG---S-CCCTTCEEEEEEE
T ss_pred ceEHHHCCC--CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc---c-ccCCCCEEEEEEE
Confidence 345666654 47899999998763 2332 355589999999998887543221 1 7999999999999
Q ss_pred EEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 572 IEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 572 v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
+.... .|++||.+.....+.+|.
T Consensus 79 vk~~~-----~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 79 IREGY-----YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEECT-----TSSEEEEEEEEEEEECCC
T ss_pred EEEcc-----CCCEEEEeCCceEEEecc
Confidence 86643 478999999999999884
No 84
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=95.90 E-value=0.027 Score=61.68 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=56.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+|+.|...||.||.||+|.... ...| -+.|.. +--|..+.||- ++-.. ++++ . --|.|+||++
T Consensus 36 ~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRP--d~T~~~aR~~~~~~~~p~k~~y~g~v 113 (464)
T 4g84_A 36 DVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRY--DLTVPFARYLAMNKLTNIKRYHIAKV 113 (464)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECS--CSHHHHHHHHHHTTCSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCC--cCcHHHHHHHHhcCCCCceeEEEecc
Confidence 578999999999999999994321 1111 124432 33467788873 33221 2222 2 2478999999
Q ss_pred eecCCCCC-ccCcceeeeeeeEeecC
Q psy8087 227 YRAENSRT-RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 227 FR~E~~~~-~rHl~EFt~lE~e~a~~ 251 (658)
||.|.... .-+.-||+|+++|.-..
T Consensus 114 fR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 114 YRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp ECCCC------CCSEEEEEEEEEESC
T ss_pred eeccCCccccCccceeeecceeccCC
Confidence 99996532 12456999999998753
No 85
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=95.69 E-value=0.089 Score=49.31 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=61.5
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccc-h-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQ-T-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~-~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
+.|+|.|.|.+++... +-..+.|-|++| .|.|++-.+... . .....+..|++|.|.|.+..- .|+.+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f------r~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF------RSEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS------SSSCEEEE
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee------CCEEEEEE
Confidence 5689999999999886 567889999999 599998754321 1 223358999999999999532 47889999
Q ss_pred EEEEEEec
Q psy8087 590 DYWEVVGL 597 (658)
Q Consensus 590 ~~i~vls~ 597 (658)
.++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99998774
No 86
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.63 E-value=0.18 Score=43.00 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=59.9
Q ss_pred ecccCCccCCcEEEEEEEEEeee---c----CCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLR---R----QGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R---~----~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
+|.++.. |..|.|.|+|.++- . .|+ ++.=+.|.|++|.|.+.+=.+... . .+..||+|.|.|.+.
T Consensus 4 kI~dl~~--g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~---~-~i~~Gdvv~i~g~v~ 77 (97)
T 3e0e_A 4 KISELMP--NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD---F-EVKKGDIAEVSGYVK 77 (97)
T ss_dssp CGGGCCT--TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG---C-CCCTTCEEEEEEEEE
T ss_pred EHHHCCC--CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc---c-ccCCCCEEEEEEEEE
Confidence 4555543 47899999998763 2 332 356688999999999887543221 1 699999999999885
Q ss_pred ecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 574 KVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .+.+||.+.+...+.+|
T Consensus 78 ~~------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 78 QG------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EC--------CEEEEEEEEEEEECC
T ss_pred Ec------CCeEEEEECCCcEEEEC
Confidence 43 46899999999888776
No 87
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=95.52 E-value=0.031 Score=62.35 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=55.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+|+.|...||.||.||+|.... ...| -..|.. +--|..+.||- ++-.. ++++ . --|.|+||++
T Consensus 89 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRP--d~T~~~aR~~~~~~~~p~k~yyig~v 166 (517)
T 4g85_A 89 DVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRY--DLTVPFARYLAMNKLTNIKRYHIAKV 166 (517)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECS--CSHHHHHHHHHHTTCSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCC--cCcHHHHHHHHhCCCCCceeEEEece
Confidence 588999999999999999994321 1111 123432 33467788873 33211 2222 2 2478999999
Q ss_pred eecCCCCC-ccCcceeeeeeeEeecC
Q psy8087 227 YRAENSRT-RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 227 FR~E~~~~-~rHl~EFt~lE~e~a~~ 251 (658)
||.|.... .=+.=||+|+++|.-..
T Consensus 167 fR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 167 YRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp ECCCC-------CCEEEEEEEEEESC
T ss_pred EeccCcccccCccceeeeeceeccCC
Confidence 99996522 11446999999998764
No 88
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=95.51 E-value=0.00013 Score=64.16 Aligned_cols=54 Identities=33% Similarity=0.319 Sum_probs=45.2
Q ss_pred HHHhhhhhhhhhhhccchhHHHHHhh---hhHHHHHHHHhHHHHHhcccCCCCCCCc
Q psy8087 445 IAKAQLKKVSKLAARDNAKSESKAKK---EEEDAEKREKNLEEAKKIVLKEDPSLPP 498 (658)
Q Consensus 445 ~~k~~lk~~~K~~~~~~~k~~k~~~k---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 498 (658)
+++++||+++|.+++..+|++|++++ ++++++.|+++|++++++.+.+|+|+|.
T Consensus 56 ~skSaLKKa~K~~~~~~kK~~k~~~~~~~e~~~~~~r~~~LEEAkkIvieeD~SLP~ 112 (113)
T 2kqr_A 56 ASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTSLSY 112 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEeecCCCCCC
Confidence 57899999999999998887777654 3335577888999999999999999985
No 89
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=95.43 E-value=0.11 Score=47.08 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
..|++-|+|.++..... -.-+.|.|++| .|.|..=.+.... .....+..|+.|.|.|.+..- .|...|.+.
T Consensus 32 ~~V~iVG~V~~~~~~~~-~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f------~g~~qi~~~ 104 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPT-NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF------QNKKSLVAF 104 (132)
T ss_dssp CEEEEEEEEEEEEECSS-EEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEE------TTEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCC-eEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeE------CCEEEEEEE
Confidence 46999999999998864 55579999999 8999885432211 234579999999999999653 366788888
Q ss_pred EEEEEec
Q psy8087 591 YWEVVGL 597 (658)
Q Consensus 591 ~i~vls~ 597 (658)
.+..+..
T Consensus 105 ~ir~v~d 111 (132)
T 3kdf_D 105 KIMPLED 111 (132)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 8876654
No 90
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=95.37 E-value=0.023 Score=59.60 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=70.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-C--CC-----ccceeeccC-------------------------CcceeeccCH
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFF-------------------------GEPAYLTQSS 206 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~-------------------------~~~~~L~~Sp 206 (658)
+.+|+ ..+.||.||.||.|..... + |- -..|.+.-| +.++||.-..
T Consensus 72 ~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~LiPta 150 (346)
T 3mf2_A 72 ALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAA 150 (346)
T ss_dssp HHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSS
T ss_pred HHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEEEcccc
Confidence 46677 7788999999999964421 1 11 112333221 2368887666
Q ss_pred HHHHHH------hcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 207 QLYLET------CLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 207 qlylk~------li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+..+=. .+. .--|+-++|+|||.|.+.+--..-+|||.|+-. |.+.+++.+..|+|+..+..
T Consensus 151 cvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 151 CYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp STTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 543332 222 223567799999999865545556999998865 46899999999998876543
No 91
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=95.30 E-value=0.049 Score=59.53 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=53.6
Q ss_pred CC-cEEEcCCccccccCCCCccceeeccCCcceeecc--CHHHHHHH--hcccC-----CcEEEEeeeeecCCC-CCccC
Q psy8087 169 NG-IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQ--SSQLYLET--CLPAL-----GDVYCIAQSYRAENS-RTRRH 237 (658)
Q Consensus 169 ~g-F~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~--Spqlylk~--li~g~-----~rvfeI~~~FR~E~~-~~~rH 237 (658)
+| +.||.||+...-...|.-+-| . +|||- +|-.+... .+... =++.|||+|||||.. .+.+|
T Consensus 122 ~~~~~eV~tp~~~~~~~SGH~d~~-----~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~ 194 (459)
T 3ikl_A 122 REQVFPVDALHHKPGPLLPGDSAF-----R--GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRN 194 (459)
T ss_dssp SCSCEECCCCSBCCSCCCSSCSCC-----T--TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC--------
T ss_pred cCceEeeccccccccccCcchhhh-----c--ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCC
Confidence 55 788999996543333443333 3 78885 33333331 22122 259999999999941 12233
Q ss_pred ----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 238 ----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 238 ----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
.-||||.|++ -|.+-++..+..+.++..+
T Consensus 195 GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 195 GVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp --CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred CcccccceeeeeEE-EEeChhHHHHHHHHHHHHH
Confidence 2599999998 4678777776666665544
No 92
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=95.11 E-value=0.16 Score=46.09 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=57.8
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
=..|++-|+|.+++... .-.-+.|.|++|.|.|..=.+... ......+..|+.|.|.|.+..- .|...|.+
T Consensus 36 i~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f------~g~~qi~~ 108 (136)
T 4gop_B 36 LGQLTFVAVVRNISRNA-TNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF------QNRRSISS 108 (136)
T ss_dssp CCEEEEEEEEEEEEECS-SEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEE------TTEEEEEE
T ss_pred EEEEEEEEEEEEEEecC-CeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEe------CCEEEEEE
Confidence 35799999999998876 455579999999999887543221 1235679999999999999653 35678888
Q ss_pred EEEEEEec
Q psy8087 590 DYWEVVGL 597 (658)
Q Consensus 590 ~~i~vls~ 597 (658)
..+..+..
T Consensus 109 ~~ir~v~d 116 (136)
T 4gop_B 109 GHMRPVID 116 (136)
T ss_dssp SEEEECSS
T ss_pred EEEEECCC
Confidence 88876543
No 93
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.05 E-value=0.16 Score=44.44 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
-..+..|+|.|.|.+.-..-+ +.++|++|.|+|-++.+. |. ..+++++-|.|.|.+-+.- ...||
T Consensus 34 ~~Dd~~V~L~G~Iv~~~~~d~----Y~F~D~TG~I~VeId~~~----w~g~~v~p~~~Vri~GevDkd~------~~~eI 99 (109)
T 1nnx_A 34 LRDDTWVTLRGNIVERISDDL----YVFKDASGTINVDIDHKR----WNGVTVTPKDTVEIQGEVDKDW------NSVEI 99 (109)
T ss_dssp SCSSEEEEEEEEEEEEEETTE----EEEEETTEEEEEECCGGG----STTCCCCTTSCEEEEEEEEEET------TEEEE
T ss_pred CcCCCeEEEEEEEEEEeCCCe----EEEECCCccEEEEEChhh----cCCcccCCCCEEEEEEEECCCC------CceEE
Confidence 446789999999987643322 789999999999987531 22 3689999999999996422 34699
Q ss_pred EEEEEEEEe
Q psy8087 588 KVDYWEVVG 596 (658)
Q Consensus 588 ~~~~i~vls 596 (658)
.|+.|++|.
T Consensus 100 dV~~i~~~~ 108 (109)
T 1nnx_A 100 DVKQIRKVN 108 (109)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEEcc
Confidence 999999875
No 94
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=94.61 E-value=0.17 Score=44.39 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=48.4
Q ss_pred CCcEEEEeEEeecc-------eecC--CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 69 IITNINIPAIPGPP-------AIPG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 69 ~~~~v~~~Grv~~~-------r~~g--k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+.|++.|+|.++ ++.| +.+.++.|.|++|.|.+.+-.+....+ ..+..|++|.++|.+..
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~--~~l~~G~vv~i~g~~v~ 85 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL--KKFREGDVIRIKDVNIR 85 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG--GTCCTTSEEEEEEEEEC
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh--hcCCCCCEEEEEeeEEc
Confidence 46788999999886 2345 568999999999999998876543222 36899999999999854
No 95
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.37 E-value=0.33 Score=51.95 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=63.2
Q ss_pred cCCcEEEEEEEEEee-ecCCCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 510 YRDKRVTIFGWVHRL-RRQGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~-R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
.....++|.|.|.+. +..-.+=+|+.|.|+++.|.|++-..-..+ ..+..|..||.|.|.|.+.. | .|
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~--------g--tL 351 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK--------D--TI 351 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET--------T--EE
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC--------C--EE
Confidence 356789999999987 443236788999999999999997643345 56678999999999999832 3 89
Q ss_pred EEEEEEEEecC
Q psy8087 588 KVDYWEVVGLA 598 (658)
Q Consensus 588 ~~~~i~vls~~ 598 (658)
.+++++++.-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999775
No 96
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.24 Score=43.59 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=65.1
Q ss_pred eeecccCCccCCcEEEEEEEEEeee---------cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEE-
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLR---------RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRG- 570 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R---------~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G- 570 (658)
+..|+++....+ ..+|+|||.++- ..| ++.=++|.|.+|.|++.+-.+.. ......|..|+++.|+|
T Consensus 4 ~~~Is~L~p~~~-~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~-~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 4 IFAIEQLSPYQN-VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFNDFA-TKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp BCCGGGCCTTTC-CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHHHH-HHHHHHSCSSSEEEEESC
T ss_pred eEEHHHCCCCCC-ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHHHH-HHHHhhcccCcEEEECCc
Confidence 445666544333 488999998641 234 57778899999999999965322 13345699999999995
Q ss_pred EEEecCCC-CCCCCceEEEEEEEEEEecCC
Q psy8087 571 RIEKVPEG-KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 571 ~v~~~~~~-~~~~g~~El~~~~i~vls~~~ 599 (658)
.|...... +.-++.+||.....+.+.+|.
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 44433211 223478999998888888874
No 97
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=93.27 E-value=0.22 Score=44.91 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=46.6
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCC
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p 134 (658)
.-..|++.|+|.++......+. +.|.|++| .|.+..=.+.... .....+..|+.|.|.|.++.-.
T Consensus 30 ~i~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~ 96 (132)
T 3kdf_D 30 EISQVTIVGIIRHAEKAPTNIV-YKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ 96 (132)
T ss_dssp ECCEEEEEEEEEEEEECSSEEE-EEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEEEEEcCCeEE-EEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeEC
Confidence 3456999999999987776544 49999999 8999875432111 1234688999999999998643
No 98
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=92.80 E-value=0.18 Score=55.15 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=59.2
Q ss_pred chHHH-h-hhCCcEEEcCCccccccC---C--CC---cccee---------------e--ccCCcceeecc--CHHHH--
Q psy8087 161 YPPEV-S-LANGIAKVTPPTLVQTQV---E--GG---STLFS---------------L--NFFGEPAYLTQ--SSQLY-- 209 (658)
Q Consensus 161 ~iR~f-l-~~~gF~EV~TPiL~~~~~---e--G~---~~~F~---------------~--~~~~~~~~L~~--Spqly-- 209 (658)
.+|+. + ...|+.||.||+|.+... + |- ++-+. . ..++..+|||- +|-.+
T Consensus 71 ~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~ 150 (454)
T 1g5h_A 71 QWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEH 150 (454)
T ss_dssp HHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHT
T ss_pred HHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHH
Confidence 45655 4 578999999999975431 1 11 11110 0 12345678885 32232
Q ss_pred -HHHhccc---C-CcEEEEeeeee---cCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 210 -LETCLPA---L-GDVYCIAQSYR---AENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 210 -lk~li~g---~-~rvfeI~~~FR---~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+..+-.. + =+++|||+||| ||-+ + +| .-||||.|++. |.+.++..+..+.++...
T Consensus 151 f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~ 217 (454)
T 1g5h_A 151 YVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHR 217 (454)
T ss_dssp HHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred HhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHHHHHHHHHHHH
Confidence 2332221 3 36999999999 6864 2 44 35999999995 778887766555555443
No 99
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.52 E-value=0.44 Score=43.17 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.-..|++.|.|.++...... .-+.|.|++|.|.+..=.+... ......+..|+.|.|.|.++.-
T Consensus 35 ~i~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f 100 (136)
T 4gop_B 35 ELGQLTFVAVVRNISRNATN-VAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF 100 (136)
T ss_dssp BCCEEEEEEEEEEEEECSSE-EEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEecCCe-EEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEe
Confidence 34679999999998876654 4459999999988876443211 0123468999999999999864
No 100
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=92.32 E-value=0.71 Score=46.88 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
..|++.|+|.++...+ .-.-+.|.|++| .|.|.+-.+.... .....+..|++|.|.|.+..- .+...|.+.
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f------~g~~qi~i~ 144 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF------QNKKSLVAF 144 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE------TTEEEEEEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEec------CCeeEEEEE
Confidence 4699999999997775 455578999999 7888875432211 124579999999999999653 356788888
Q ss_pred EEEEEecC
Q psy8087 591 YWEVVGLA 598 (658)
Q Consensus 591 ~i~vls~~ 598 (658)
.+..+...
T Consensus 145 ~ir~v~d~ 152 (270)
T 2pi2_A 145 KIMPLEDM 152 (270)
T ss_dssp EEEECSCT
T ss_pred EEEecCCH
Confidence 88877643
No 101
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=92.18 E-value=0.44 Score=53.88 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=66.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--------CCCccceee-ccCCc-ceeeccCHHHHHHHhcc-----cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--------EGGSTLFSL-NFFGE-PAYLTQSSQLYLETCLP-----AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--------eG~~~~F~~-~~~~~-~~~L~~Spqlylk~li~-----g~-~rvfeI 223 (658)
..+|+.|...||.||.|+.++.... .++...+.+ |-... .-.||+|-=--+=..+. +. =|+||+
T Consensus 398 ~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEi 477 (589)
T 3l4g_B 398 ELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEI 477 (589)
T ss_dssp HHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4789999999999999999974321 111222322 22222 24677763222222221 11 379999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
|+|||.+..+ .+|.+|+.++..-+... ++.++...++.++.
T Consensus 478 G~Vf~~d~~~-~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~ 520 (589)
T 3l4g_B 478 SDIVIKDSNT-DVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQ 520 (589)
T ss_dssp EEEEEECTTS-TTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred eeEEecCCcc-ccCCccccEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999987643 47889999998876653 57777766665554
No 102
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=92.15 E-value=0.96 Score=40.25 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred ccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 505 KDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 505 ~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
.-+..+.|++|++-|+|.+++..|+ .|+.-..+++.++|.++.... ..+ +.+|.|.|++ .+.
T Consensus 15 s~L~~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~-----~~l--~~~vEViG~V---------~~~ 76 (121)
T 3kdf_A 15 GMLAQFIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD-----EEI--SGIVEVVGRV---------TAK 76 (121)
T ss_dssp GGGGGGTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS-----SCC--CSEEEEEEEE---------CTT
T ss_pred HHHHhhCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC-----ccc--CcEEEEEEEE---------CCC
Confidence 3456789999999999999998774 343333455678888875321 123 4599999999 334
Q ss_pred eEEEEEEEEEEec
Q psy8087 585 HELKVDYWEVVGL 597 (658)
Q Consensus 585 ~El~~~~i~vls~ 597 (658)
.+|.+..+.-++.
T Consensus 77 ~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 77 ATILCTSYVQFKE 89 (121)
T ss_dssp SCEEEEEEEECCC
T ss_pred CeEEEEEEEecCC
Confidence 6788888877664
No 103
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=91.95 E-value=1.4 Score=38.87 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=59.1
Q ss_pred ecccCCccCCcEEEEEEEEEee---e----cCCC-ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRL---R----RQGK-GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIE 573 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~---R----~~Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~ 573 (658)
+|.++.. ....|.+.|.|.++ | ..|+ ...=+.|.|.+|.|.+.+=... ...+..|++|.|+ |.+.
T Consensus 4 ~I~dL~~-~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~-----~~~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 4 KVGNLKP-NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH-----AGSIKEGQVVKIENAWTT 77 (119)
T ss_dssp CGGGCCT-TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG-----TTCCCTTCEEEEEEEEEE
T ss_pred EHHHCcC-CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh-----hhcCCCCCEEEEEeEEEE
Confidence 4555543 22368899999876 4 3454 5777899999999888875432 2358999999999 8875
Q ss_pred ecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 574 KVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .|.++|.+.....+.++
T Consensus 78 ~~------~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 78 AF------KGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EE------TTEEEEEECTTCEEEEC
T ss_pred Ee------CCEEEEEECCCEEEEEc
Confidence 42 47799999875555554
No 104
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=91.47 E-value=0.63 Score=54.51 Aligned_cols=106 Identities=15% Similarity=0.017 Sum_probs=67.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccCC----CCcc-ceee-ccCCc-ceeeccCHHHHHHHhcc-----cC--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVE----GGST-LFSL-NFFGE-PAYLTQSSQLYLETCLP-----AL--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~e----G~~~-~F~~-~~~~~-~~~L~~Spqlylk~li~-----g~--~rvfeI~~ 225 (658)
..+|+.|...||.|+.|..++....- +... .+.+ |-... ...||+|-=--+=..+. +. -|+||+|+
T Consensus 500 ~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~ 579 (795)
T 2rhq_B 500 RTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGR 579 (795)
T ss_dssp HHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEee
Confidence 48899999999999999888744211 1122 2332 22222 23677653322222221 22 27999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
|||.+..+. .| +||++|..-++. .|+.|+...+|.++..+
T Consensus 580 Vf~~d~~~~-~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 580 VFFGNGEGE-LP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEECCCTTS-CC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEecCCccc-Cc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999754322 56 899999876654 58889998888887654
No 105
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=91.43 E-value=0.58 Score=45.73 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC------Cccceee-ccCC-cceeeccCHHHHH-HHhc---c-cCC--cEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG------GSTLFSL-NFFG-EPAYLTQSSQLYL-ETCL---P-ALG--DVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG------~~~~F~~-~~~~-~~~~L~~Spqlyl-k~li---~-g~~--rvfeI~ 224 (658)
..+|+.|...||.||-|-.++....-. ......+ |-.. ..-.||+|-=--+ +.+. . +.. |+||||
T Consensus 11 ~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 90 (213)
T 3ig2_A 11 NLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFG 90 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEEEEE
T ss_pred HHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEee
Confidence 479999999999999999887432100 0112222 2222 2347787733222 2222 1 332 799999
Q ss_pred eeeecCCCCCc-----cCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTR-----RHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 225 ~~FR~E~~~~~-----rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
+||+.++.+.. .+..|..+|-+-++. .|+.|+...+|.++..+
T Consensus 91 ~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 91 NCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99997653211 234588888876655 36777777777776543
No 106
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=90.22 E-value=2.4 Score=36.82 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=61.3
Q ss_pred eecccCCccCCcEEEEEEEEEeeec--CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEEecCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRR--QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEKVPEG 578 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~--~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~ 578 (658)
.+|.++.. .++.|.+.|.|.++-. .|+....+.|-|.+|.|-+++=... .+..+..|++|.|+ |.+..-
T Consensus 6 ~kI~dl~~-~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~----~~~~~~~G~~V~i~n~~v~~~--- 77 (109)
T 2kbn_A 6 TKIVDIVE-NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA----ELPLLEQGESYLLRSVVVGEY--- 77 (109)
T ss_dssp CCTTTCCS-TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG----CCCCCCTTCEEEEEEEEEEEE---
T ss_pred eEHHHCCC-CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc----cccccCCCCEEEEEEEEEEEE---
Confidence 45666543 3688999999988743 3344556899999999888875421 23479999999999 666432
Q ss_pred CCCCCceEEEEEEEEEEecC
Q psy8087 579 KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 579 ~~~~g~~El~~~~i~vls~~ 598 (658)
.|.++|.+.++..+.+.
T Consensus 78 ---~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 78 ---NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp ---TTEEEEEECSSSEEEEC
T ss_pred ---CCEEEEEECCceEEEEC
Confidence 47799999877666654
No 107
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=89.47 E-value=0.68 Score=40.42 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=46.1
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.|+|.|.|.+.-.. . -| .++|++|.|+|-++.+. |.-..+++++-|.+.|.+-.
T Consensus 35 ~Dd~~V~L~G~Iv~~~~~--d-~Y-~F~D~TG~I~VeId~~~---w~g~~v~p~~~Vri~GevDk 92 (109)
T 1nnx_A 35 RDDTWVTLRGNIVERISD--D-LY-VFKDASGTINVDIDHKR---WNGVTVTPKDTVEIQGEVDK 92 (109)
T ss_dssp CSSEEEEEEEEEEEEEET--T-EE-EEEETTEEEEEECCGGG---STTCCCCTTSCEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEEeCC--C-eE-EEECCCccEEEEEChhh---cCCcccCCCCEEEEEEEECC
Confidence 567889999999985532 2 34 78999999999987654 33357999999999999985
No 108
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=88.59 E-value=1.6 Score=42.47 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC------Cccceee-ccCCc-ceeeccCHHHHH-HHhc---c-cCC--cEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG------GSTLFSL-NFFGE-PAYLTQSSQLYL-ETCL---P-ALG--DVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG------~~~~F~~-~~~~~-~~~L~~Spqlyl-k~li---~-g~~--rvfeI~ 224 (658)
..+|+.|...||.||-|-.++....-. ......+ |-... .-.||+|-=--+ +.+. . +.. |+||||
T Consensus 11 ~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lFEiG 90 (213)
T 3ica_A 11 TVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLFEWG 90 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEEEEE
T ss_pred HHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEEEee
Confidence 479999999999999999887432100 0111222 22222 357887733222 2222 2 443 799999
Q ss_pred eeeecCCCCC-----ccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRT-----RRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 225 ~~FR~E~~~~-----~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
+||+.++.+. ..+..|..+|-.-++. .|+.|+...+|.++..+
T Consensus 91 ~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 91 KCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999765321 1234688888776655 47888888888877643
No 109
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=88.55 E-value=2 Score=42.06 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred CcEEEEEEEEEeeecCC-------CceEEEEEEeCCEE---EEEEEcCCccc-h-HHhccCCCCcEEEEEEEEEecCCC-
Q psy8087 512 DKRVTIFGWVHRLRRQG-------KGLMFVTLRDGSGF---IQCVLADILCQ-T-EHALLLSTESSVQFRGRIEKVPEG- 578 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~G-------kkl~Fi~Lrd~~~~---iQvv~~~~~~~-~-~~~~~L~~gs~V~V~G~v~~~~~~- 578 (658)
=+.|.|.|.|...+-.- ....|+.|-|.+|. |.|.++..... . ........|.+|.|+|++..-..+
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~ 164 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSI 164 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCST
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeecccc
Confidence 35799999999986543 23589999999984 88877643110 0 011124589999999999764321
Q ss_pred -CCCCCceEEEEEEEEEEecC
Q psy8087 579 -KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 579 -~~~~g~~El~~~~i~vls~~ 598 (658)
..+.-.-||.++++++++..
T Consensus 165 ~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 165 NVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccceEEEEEEEEEeccC
Confidence 11122579999999999865
No 110
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=88.24 E-value=1.9 Score=36.58 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred CCcEEEEeEEeecc-------eecC--CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccc
Q psy8087 69 IITNINIPAIPGPP-------AIPG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK 139 (658)
Q Consensus 69 ~~~~v~~~Grv~~~-------r~~g--k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d 139 (658)
.+..|+|.|+|.++ |+.| +.+.=+.|.|.+|.|-+.+=.+... ..+.+|++|.+.|.++.-.. .++
T Consensus 10 ~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~----~~i~~Gdvv~i~g~v~~~~~-~~e 84 (97)
T 3e0e_A 10 PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD----FEVKKGDIAEVSGYVKQGYS-GLE 84 (97)
T ss_dssp TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG----CCCCTTCEEEEEEEEEEC---CEE
T ss_pred CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc----cccCCCCEEEEEEEEEEcCC-eEE
Confidence 34678999998774 2234 2366689999999999987654321 15899999999998876433 344
Q ss_pred eEe
Q psy8087 140 VQL 142 (658)
Q Consensus 140 ~~l 142 (658)
+.+
T Consensus 85 l~~ 87 (97)
T 3e0e_A 85 ISV 87 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 111
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=87.05 E-value=3.9 Score=35.21 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=49.8
Q ss_pred CcEEEEeEEeecce-------ecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccce
Q psy8087 70 ITNINIPAIPGPPA-------IPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKV 140 (658)
Q Consensus 70 ~~~v~~~Grv~~~r-------~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~ 140 (658)
+..|+|.|+|.++- +.|+ .+.=+.|.|.+|.|.+.+=.+... ..+.+|++|.+.|.++....+.+++
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~----~~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD----IDVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG----SCCCTTCEEEEEEEEEECTTSSEEE
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc----cccCCCCEEEEEEEEEEccCCCEEE
Confidence 36799999987742 2332 255689999999999886544321 1689999999999898876555666
Q ss_pred Eec
Q psy8087 141 QLI 143 (658)
Q Consensus 141 ~l~ 143 (658)
.+.
T Consensus 90 ~~g 92 (105)
T 3dm3_A 90 TAN 92 (105)
T ss_dssp EEE
T ss_pred EeC
Confidence 554
No 112
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=87.01 E-value=6 Score=33.85 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=33.7
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEec
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~ 597 (658)
++|++-..... .....|+.|+-|.|+|.+... ..+......+|.+++++.|+.
T Consensus 50 ~~vv~~g~~Ae-~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQ-AITHSITVGSRITVQGFISCH-KAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTH-HHHTTCCTTCEEEEEEEEEC---------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHHH-HHHhhCCCCCEEEEEEEEEec-cCCCCCEEEEEEEEEEEECcC
Confidence 77787764321 234569999999999999876 222211128999999998863
No 113
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=85.86 E-value=2.3 Score=39.59 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=49.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccc-hh-hhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILC-QT-EHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~-~~-~~~~~l~~es~V~v~G~l~~~ 133 (658)
..-..|+|.|.|.+++...+ -....|-|+|| .|.|++-.+.. .. -....+..|+.|.|.|.++.-
T Consensus 45 ~PI~~V~IvGiVv~~~~~~~-~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 45 FPIRWIQIVGYIAAIDIYEG-KHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp EEECEEEEEEEEEEEEEETT-EEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred eEEEEEEEEEEEEEEEEeCC-EEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 34567999999999888876 47779999999 59999876541 11 112358899999999999863
No 114
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=85.42 E-value=5.5 Score=36.30 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeC-CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG-SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKS 580 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~-~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~ 580 (658)
+.-+-+....|++|+|-|+|.++-..|+ .| +|... ++.|+|.++.... -..+-+|.|.|+|
T Consensus 33 VN~s~L~~fvGk~VriVGkV~~~~~~G~--~~-~l~s~Dg~~VtV~l~~pL~-------~~~~~~VEViG~V-------- 94 (142)
T 2pi2_E 33 INAGMLAQFIDKPVCFVGRLEKIHPTGK--MF-ILSDGEGKNGTIELMEPLD-------EEISGIVEVVGRV-------- 94 (142)
T ss_dssp ECGGGGGGSTTCEEEEEEEEEEECTTSS--EE-EEECTTSCEEEEECSSCCS-------SCCCSEEEEEEEE--------
T ss_pred ECHHHHHhhCCCEEEEEEEEeEEcCCCC--EE-EEEeCCCcEEEEEeCCCCC-------ccCCCEEEEEEEE--------
Confidence 3333457788999999999999944443 33 45544 5578888764211 1347799999999
Q ss_pred CCCceEEEEEEEEEEec
Q psy8087 581 APGGHELKVDYWEVVGL 597 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~ 597 (658)
.+..+|.+..+.-++.
T Consensus 95 -~~~~tI~~~~~~~fGd 110 (142)
T 2pi2_E 95 -TAKATILCTSYVQFKE 110 (142)
T ss_dssp -CTTSCEEEEEEEECCC
T ss_pred -CCCCcEEEEEEEecCC
Confidence 2345688877765554
No 115
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=85.20 E-value=2.3 Score=42.07 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred cceeecccCCccCCcEEEEEEEEEee---e------cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 499 AVRIKIKDGEKYRDKRVTIFGWVHRL---R------RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 499 ~~~~~i~~~~~~~g~~V~v~GwI~~~---R------~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
+.+..|.++.... ..++|+|||.++ | ..| ++.=++|.|.+|.|++.+-.+.. ..+...|..|+++.|+
T Consensus 6 ~~~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~-~~~~~~l~~G~vy~i~ 82 (246)
T 1jmc_A 6 SKVVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQV-DKFFPLIEVNKVYYFS 82 (246)
T ss_dssp -CBCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHH-HHHGGGCCTTCEEEEE
T ss_pred cceEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChHHH-HHhhhhcccCCEEEEC
Confidence 3456677765443 358899999876 3 123 56668899999999999875322 1344579999999999
Q ss_pred EEEEecCCC--CCCCCceEEEEEEEEEEecCC
Q psy8087 570 GRIEKVPEG--KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 570 G~v~~~~~~--~~~~g~~El~~~~i~vls~~~ 599 (658)
+.-.+...+ +...+.+||....-+.+.+|.
T Consensus 83 ~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 83 KGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 644332212 223578999887665555553
No 116
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=84.33 E-value=1.3 Score=53.88 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=47.5
Q ss_pred cCCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|+|.|.+++. .|+.++|++|-|.+|.+.|++..+... .....|..+.+|.|+|.+.... .+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~-~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE-GVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC--------------CTTCEEEEEEEEC------------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHH-HHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 35788999999988763 444699999999999999998765321 2234589999999999995321 36
Q ss_pred EEEEEEEEEEec
Q psy8087 586 ELKVDYWEVVGL 597 (658)
Q Consensus 586 El~~~~i~vls~ 597 (658)
.|.++++.-++.
T Consensus 1112 ~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1112 RVLAQAVWTLEE 1123 (1220)
T ss_dssp CEEEEEEEEHHH
T ss_pred EEEEeeeecHHH
Confidence 788888876654
No 117
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=82.44 E-value=16 Score=31.92 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=39.8
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
|+|++-.... +.+..|+.|+-|.|+|.+.... .. ...++|+++.|+.|+...
T Consensus 49 i~vv~~Gk~A--E~~~~l~kGs~V~VeGrL~trs-~~--G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLA--LLLADTPLGTEMQVQGFLAPAR-KD--SVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHH--HHHTTCCTTCEEEEEEEEEESS-TT--CSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHH--HhhhccCCCCEEEEEEEEEECC-CC--CCEEEEEEEEEEEcCCCC
Confidence 8888877433 2246799999999999998753 11 256999999999997654
No 118
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=81.85 E-value=6.2 Score=35.66 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=55.0
Q ss_pred ccCCcEEEEEEEEE--ee-ecC-CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 509 KYRDKRVTIFGWVH--RL-RRQ-GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~-R~~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
...|+.|+|.|.|. ++ |.. +..+.| .|.|++..|.|..++... ..++.|.-|.|+|.+.. +
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilP-----DlFrEGqgVVa~G~l~~--------~- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGILP-----DLFREGQGVVVQGELEK--------G- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCCC-----TTCCTTSEEEEEEEECS--------S-
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCCC-----ccccCCCeEEEEEEECC--------C-
Confidence 45789999999998 34 542 335776 678998899999987543 24789999999999932 1
Q ss_pred eEEEEEEEEEEecCCCC
Q psy8087 585 HELKVDYWEVVGLAPAG 601 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~ 601 (658)
=.+.+++ ||.+|+.+
T Consensus 90 g~F~A~e--VLAKhdek 104 (136)
T 1sr3_A 90 NHILAKE--VLAKHDEN 104 (136)
T ss_dssp SEEEESS--CBCCSCCC
T ss_pred CeEEEEE--EEecCCCC
Confidence 1355554 78899753
No 119
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=81.55 E-value=3.1 Score=42.03 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=45.2
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccch-hhhhhcCCCccEEEEEEEeEeCC
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~-~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|++.|+|.++..... -.-+.|.|++| .|.+.+=.+... ......+..|+.|.|.|.++.-.
T Consensus 72 ~~V~ivG~V~~i~~~~~-~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~ 136 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPT-NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ 136 (270)
T ss_dssp SEEEEEEEEEEEEECSS-EEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEEeccc-eEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC
Confidence 46999999999876654 45558999999 798877543211 11224689999999999998643
No 120
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=81.53 E-value=3.9 Score=47.75 Aligned_cols=99 Identities=19% Similarity=0.080 Sum_probs=63.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCccceee-ccCCc-ceeeccCHHHHHHHhcc-----c-C--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGSTLFSL-NFFGE-PAYLTQSSQLYLETCLP-----A-L--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~~~F~~-~~~~~-~~~L~~Spqlylk~li~-----g-~--~rvfeI~~ 225 (658)
..+|+.|...||.|+-|-.++.... ......+.+ |-... .-.||+|-=--+=..+. + . -|+||+|+
T Consensus 496 ~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~ 575 (785)
T 1b7y_B 496 QRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGR 575 (785)
T ss_dssp HHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEee
Confidence 4789999999999999988864321 001122322 22222 23677653222222221 3 2 27999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeec------------CCHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAF------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~------------~d~~~~m~~~e~li~~i 267 (658)
||| + +||.+|..-++. .|+.|+...+|.++..+
T Consensus 576 Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 576 VFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred eec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999 2 688899887665 47889888888887654
No 121
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=81.08 E-value=8 Score=34.97 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEEEE--ee-ec-CCCceEEEEEEe-CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 509 KYRDKRVTIFGWVH--RL-RR-QGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~-R~-~Gkkl~Fi~Lrd-~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
...|+.|+|.|.|. ++ |. .|..+.| .|.| ++..|.|..++... ..++.|.-|.|+|.+.. .|
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~GilP-----DlFrEGqgVVa~G~l~~-------~g 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLLP-----DLFREGQGIVAQGVLGE-------DG 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCCT-----TSCCSSSEEEEEEEECS-------TT
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCCC-----ccccCCCeEEEEEEECC-------CC
Confidence 46789999999995 44 54 2446777 6688 77789999987542 24789999999999932 12
Q ss_pred ceEEEEEEEEEEecCCC
Q psy8087 584 GHELKVDYWEVVGLAPA 600 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~ 600 (658)
.+.+++ ||.+|+.
T Consensus 96 --~F~A~e--VLaKhde 108 (136)
T 1j6q_A 96 --KLAATE--VLAKHDE 108 (136)
T ss_dssp --SEEEEE--EECCC--
T ss_pred --eEEEEE--EEecCCC
Confidence 255555 7899975
No 122
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=81.06 E-value=15 Score=30.93 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=53.4
Q ss_pred cCCcEEEEEEEEEe--e-ec-CCCceEEEEEEeC---CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCC
Q psy8087 510 YRDKRVTIFGWVHR--L-RR-QGKGLMFVTLRDG---SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAP 582 (658)
Q Consensus 510 ~~g~~V~v~GwI~~--~-R~-~Gkkl~Fi~Lrd~---~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~ 582 (658)
..+++++|.|-|.. + |. .|..+.| .|.|+ +..|.|.+++... ..++.|.-|.++|.+..
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~GilP-----DlFrEGqgVV~~G~l~~-------- 71 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAVP-----DTFKPGVEVIIEGGLAP-------- 71 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCCC-----TTCCTTCEEEEEEEECT--------
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCCC-----ccccCCCeEEEEEEEeC--------
Confidence 46889999999963 3 54 2446776 66887 7889999987543 24789999999999931
Q ss_pred CceEEEEEEEEEEecCCC
Q psy8087 583 GGHELKVDYWEVVGLAPA 600 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~ 600 (658)
+.=.+.+++ ||.+|+.
T Consensus 72 ~~g~F~A~e--vLaKh~e 87 (94)
T 2kct_A 72 GEDTFKART--LMTKCPL 87 (94)
T ss_dssp TCSEEEEEE--EEESSCC
T ss_pred CCCEEEEeE--EEEeCCC
Confidence 012356655 7889964
No 123
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=79.81 E-value=7 Score=41.74 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=49.8
Q ss_pred cCCcEEEEeEEeecc-eecCCCeEEEEEEcCCeEEEEEEecccchh-hhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPP-AIPGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~-r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~ 132 (658)
...+.|.|.|.|.+. +..-++=+|+.|.|+++.|.|++-+..... .....|..||.|.|.|.++.
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~ 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC
Confidence 345789999999987 555445588899999999999987643211 12347899999999999876
No 124
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=79.43 E-value=0.88 Score=49.82 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=33.6
Q ss_pred EEEEEeCCc---ceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCC-CCccceecchhHHHHHHhcc
Q psy8087 366 SVDVLFPNV---GEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 366 ~fdL~~~G~---~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~-pP~gG~GiGidRL~m~l~g~ 435 (658)
-|+.+.+|. |-||+|+. |...+..+. |. .|..|||||+|||+.+|...
T Consensus 310 vFe~~~~~~~~~~~i~~GGR---------------------YD~L~~~f~-g~~~pavGfaiGieRli~~L~e~ 361 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGR---------------------YEELVGTFI-GEKMPGVGISIGLTRLISRLLKA 361 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEE---------------------ESSSSGGGT-CSCCCEEEEEEEHHHHHHHHHHT
T ss_pred EEEEEECCCCccceeccccc---------------------HHHHhhhhc-CCCCceeeeeccHHHHHHHHHHc
Confidence 499999874 46777754 223344333 43 57889999999999998753
No 125
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=78.57 E-value=11 Score=34.87 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=50.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEE------Ee--------CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTL------RD--------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~L------rd--------~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
.|+|.|+|.+ +|. .|+.++-+.| +| .+..+.|++-..... .....|+.|+.|.|+|.+..
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae-~~~~~l~KG~~V~VeG~L~~ 88 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE-IVGEYLRKGSKIYIEGSLRT 88 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH-HHHhhcCCCCEEEEEEEEEe
Confidence 4778888865 443 3433443333 11 123478887654221 22345999999999999976
Q ss_pred cCC-CCC--CCCceEEEEEEEEEEecC
Q psy8087 575 VPE-GKS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 575 ~~~-~~~--~~g~~El~~~~i~vls~~ 598 (658)
..- .+. +.-.+||.|++|++|...
T Consensus 89 ~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 89 RKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred eeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 431 111 113489999999999754
No 126
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=78.36 E-value=13 Score=31.94 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=55.4
Q ss_pred eecccCCccCCcEEEEEEEEEee-----ecCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL-----RRQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIE 573 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~-----R~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~ 573 (658)
.+|.++.. ....|.+.|.|..+ +..|+ .+.=+.|-|.+|.|.+.+=.+. |..||+|.|. |.+.
T Consensus 4 ~kI~dl~p-g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~--------l~~Gdvv~i~ng~v~ 74 (106)
T 2k75_A 4 VKIRDVSL-STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ--------LQDSDVVRIDNARVA 74 (106)
T ss_dssp CCSTTCCT-TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC--------CCTTEEEEEEEEEEE
T ss_pred EEHHHcCC-CCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc--------cCCCCEEEEEeeEEe
Confidence 34555543 23457888888664 23443 2666888999998887775432 9999999999 7764
Q ss_pred ecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 574 KVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .|.++|.+..+..+.+.
T Consensus 75 ~~------~g~~~L~v~~~~~I~~~ 93 (106)
T 2k75_A 75 QF------NGYLSLSVGDSSRIESV 93 (106)
T ss_dssp EE------TTEEEEEECTTSEEEEC
T ss_pred EE------CCEEEEEECCcEEEEEC
Confidence 32 47799999776555554
No 127
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=76.73 E-value=23 Score=30.26 Aligned_cols=47 Identities=9% Similarity=0.026 Sum_probs=35.5
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEE
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vl 595 (658)
++|++-.... + +..|+.|+-|.|+|.+..+.- ....+.+++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~l~KG~~v~veGrL~~rs~---~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQYRQGDCATVEGFLAQKSR---RSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HSTTCTTCEEEEEEEEEESSS---SCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhccCCCCEEEEEEEEEECcc---CCccEEEEEEEEEEc
Confidence 6777765332 3 556999999999999987653 223899999999876
No 128
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=76.49 E-value=6.3 Score=34.91 Aligned_cols=56 Identities=18% Similarity=0.117 Sum_probs=40.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+.|++.|+|.+++-.|+ .|+.-..+++.|+|.+..... ..+ +..|.|.|++..
T Consensus 20 fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~-----~~l--~~~vEViG~V~~ 75 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD-----EEI--SGIVEVVGRVTA 75 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS-----SCC--CSEEEEEEEECT
T ss_pred hCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC-----ccc--CcEEEEEEEECC
Confidence 67899999999999887776 564444456789998876321 123 449999999984
No 129
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=76.35 E-value=13 Score=32.48 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=41.2
Q ss_pred cCCccCCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 506 ~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd-~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.+..+.|++|+|-|+|.+.+. + . +.|.. .++.|.|.++... .+..+.+|.|.|++.
T Consensus 12 ~L~~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~-------~~~~~~~vEViG~V~ 68 (114)
T 4gop_A 12 MLGQYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS-------DVSSSTFVEVTGKVS 68 (114)
T ss_dssp TGGGGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC-------CGGGCSEEEEEEEEC
T ss_pred HHHhhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC-------CcccCcEEEEEEEEc
Confidence 356788999999999999995 2 2 45654 3456887776532 244689999999993
No 130
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=76.20 E-value=2.9 Score=50.81 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=38.5
Q ss_pred cCCcEEEEeEEeeccee----cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 68 YIITNINIPAIPGPPAI----PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~----~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|+.|+|+|-|..+++ .|+.++|+.|.|.+|.+.|++..+....+. ..+..+..|.|+|.+....
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~-~~l~~~~~~~v~G~v~~~~ 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVS-PKLKEDIPLLVLAEVEKGE 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC--------------CTTCEEEEEEEEC---
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHH-HHhccCCEEEEEEEEEECC
Confidence 35678999999988774 455599999999999999998776543322 3578999999999997543
No 131
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=75.54 E-value=10 Score=34.05 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=36.9
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CCC--CCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GKS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~~--~~g~~El~~~~i~vls~~ 598 (658)
.+.|++-..... .....|+.||.|.|+|.+....- .+. +.-.+||.|++++.|...
T Consensus 50 ~~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 50 FIDARLFGRTAE-IANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEHHHHH-HHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEcHHHH-HHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 477877653221 22345999999999999977431 111 112378999999998753
No 132
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=73.85 E-value=1.8 Score=49.83 Aligned_cols=30 Identities=33% Similarity=0.238 Sum_probs=24.4
Q ss_pred CcEEEEeeeeecCCCCCccCc----ceeeeeeeEee
Q psy8087 218 GDVYCIAQSYRAENSRTRRHL----AEYTHVEAECA 249 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl----~EFt~lE~e~a 249 (658)
=|+||||++||||-+ .||- =||||.|+|.=
T Consensus 267 ~~~aqiG~~fRnEis--Pr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 267 FAAAQIGNSFRNEIS--PRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp EEEEEEEEEECCCSS--CCSGGGSCSEEEEEEEEEE
T ss_pred EEEEeecceecCCCC--CCCCCccceeeEEccceEE
Confidence 379999999999954 2554 69999999874
No 133
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=73.52 E-value=14 Score=32.06 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=49.4
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e----------CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR-D----------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-d----------~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
.|.|.|+|.+ +|. .|+.++-+.|- + .+..++|++-..... .....|+.||.|.|+|.+....-
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~l~~~~~ 85 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAE-NTALYCQKGSLVGVSGRIQTRSY 85 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHH-HHHHHCCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHH-HHHHhCCCCCEEEEEEEEEeeEE
Confidence 4777788765 343 34334433331 1 123478887653221 22345999999999999986531
Q ss_pred -CC-C-CCCceEEEEEEEEEEecC
Q psy8087 578 -GK-S-APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 578 -~~-~-~~g~~El~~~~i~vls~~ 598 (658)
.+ . +...+||.++.+++|...
T Consensus 86 ~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 86 ENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp C----CCEEEEEEEEEEEEECC--
T ss_pred ECCCCCEEEEEEEEEEEEEEccCC
Confidence 11 1 123489999999998764
No 134
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=72.98 E-value=3.2 Score=44.48 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred EEEEEeCCcc-eeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcc
Q psy8087 366 SVDVLFPNVG-EVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 366 ~fdL~~~G~~-Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~ 435 (658)
-|+.+.+|.| -||+|+. |+.+.+.| . |-.|..||+||+|||+.+|...
T Consensus 282 vFe~~~~~~g~~i~~GGR----YD~L~~~f-----------------G-~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR----YDELLSKF-----------------H-RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE----CTTHHHHT-----------------T-CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc----cchhhhcc-----------------C-CCCCEEEEEeeHHHHHHHHHhc
Confidence 5999998765 6777764 22233333 1 2258899999999999988654
No 135
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=71.79 E-value=29 Score=30.81 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=35.0
Q ss_pred EEEEEcCC-ccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEEEEEecC
Q psy8087 543 IQCVLADI-LCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 543 iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i~vls~~ 598 (658)
+.|++-.+ ... .....|+.||.|.|+|.+....- .+ .....+||.|+.+++|.+.
T Consensus 69 ~~v~~wg~~~Ae-~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRD-VAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHH-HHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHH-HHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 67777652 221 23346999999999999976431 11 1123589999999998764
No 136
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=71.75 E-value=22 Score=42.49 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred CcEEEEEEEEEee--ec--CCCceEEEEEEeCCEEEEEEEcCCc-cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 512 DKRVTIFGWVHRL--RR--QGKGLMFVTLRDGSGFIQCVLADIL-CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 512 g~~V~v~GwI~~~--R~--~Gkkl~Fi~Lrd~~~~iQvv~~~~~-~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
...|+|.|.|-.+ |. .|+.+.-+.+.|.++.|.|...... ...+....|+.|+.|.|+|.+....- .+++.
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~----~~~~~ 92 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTF----VRDLV 92 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETT----TTEEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccC----CcceE
Confidence 4579999999875 42 5677777899999999887654332 22345567999999999999976431 46788
Q ss_pred EEEEEEEEEec
Q psy8087 587 LKVDYWEVVGL 597 (658)
Q Consensus 587 l~~~~i~vls~ 597 (658)
+.+.++..+.+
T Consensus 93 ~~~~~~~~~~~ 103 (1041)
T 3f2b_A 93 IIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEEECC
T ss_pred EEeeeeEEecc
Confidence 88888876654
No 137
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=70.80 E-value=25 Score=31.66 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred cCCcEEEEeEEee--cceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPG--PPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~--~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.++|.|.|. ++.+. +..+.| .|.|+...|.|....-... .++.|.-|.|+|.+..
T Consensus 26 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilPD-----lFrEGqgVVa~G~l~~ 88 (136)
T 1sr3_A 26 EVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGILPD-----LFREGQGVVVQGELEK 88 (136)
T ss_dssp CTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCCCT-----TCCTTSEEEEEEEECS
T ss_pred CCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCCCc-----cccCCCeEEEEEEECC
Confidence 4678999999998 46664 445788 7799988999988765422 3678999999999964
No 138
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=69.57 E-value=24 Score=31.11 Aligned_cols=61 Identities=21% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEeCCEEEEE-EEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 534 VTLRDGSGFIQC-VLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 534 i~Lrd~~~~iQv-v~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
+.|.||...+|. ++.......-.-..|+.+++|.++=.....-. .+..-|.+.+++||.++
T Consensus 47 l~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~----~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLK----DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECS----SSCEEEEEEEEEEEECS
T ss_pred EEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEec----CCcEEEEEEeeEEeecc
Confidence 789999999998 88765443333346999999999877655431 14578899999999873
No 139
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=69.45 E-value=24 Score=31.00 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=49.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEE------Ee--------CCEEEEEEEcC-CccchHHhccCCCCcEEEEEEEEE
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTL------RD--------GSGFIQCVLAD-ILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~L------rd--------~~~~iQvv~~~-~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.|.|.|+|.+ +|. .|+.++-+.| +| .+..+.|++-. .... .....|+.||.|.|+|.+.
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae-~~~~~l~KG~~V~V~G~L~ 86 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD-LIDKYLRKGRRVYVQGSLH 86 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH-HHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH-HHHhhcCCCCEEEEEEEEE
Confidence 5777777765 343 3444443443 11 22348888866 3221 2334599999999999998
Q ss_pred ecCC-CC--C--CCCceEEEEE----EEEEEecC
Q psy8087 574 KVPE-GK--S--APGGHELKVD----YWEVVGLA 598 (658)
Q Consensus 574 ~~~~-~~--~--~~g~~El~~~----~i~vls~~ 598 (658)
...- .+ . +...+||.|+ +++.|...
T Consensus 87 ~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 87 TRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEECC----CCCEEEEEEEECTTTCEEEECC--
T ss_pred eEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCc
Confidence 6431 11 1 1234789997 88888653
No 140
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=69.18 E-value=21 Score=30.98 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=41.3
Q ss_pred EEEEeEEeecc---e----ecCC-CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEE-EEeEe
Q psy8087 72 NINIPAIPGPP---A----IPGK-GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~~---r----~~gk-~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~-G~l~~ 132 (658)
.|.+.|+|.++ | +.|+ .+.=+.|.|.+|.|.+.+=.+.. ..+..|++|.+. |.+..
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~-----~~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA-----GSIKEGQVVKIENAWTTA 78 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT-----TCCCTTCEEEEEEEEEEE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh-----hcCCCCCEEEEEeEEEEE
Confidence 47888888664 3 3454 57778999999998887765432 247899999999 77764
No 141
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=66.41 E-value=28 Score=31.36 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred cCCcEEEEeEEee--cceec--CCCeEEEEEEc-CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPG--PPAIP--GKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~--~~r~~--gk~l~Fi~LrD-~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.++|.|.|. ++.+. +..+.| .|.| +...|.|....-... .++.|.-|.|+|.+.+
T Consensus 30 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~GilPD-----lFrEGqgVVa~G~l~~ 93 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLLPD-----LFREGQGIVAQGVLGE 93 (136)
T ss_dssp CTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCCTT-----SCCSSSEEEEEEEECS
T ss_pred CCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCCCc-----cccCCCeEEEEEEECC
Confidence 5678999999995 56665 455888 7788 777899988764322 3678999999999964
No 142
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=65.83 E-value=6.3 Score=34.28 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=42.3
Q ss_pred EEEEeEEeecc---------eecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEE-EeEeC
Q psy8087 72 NINIPAIPGPP---------AIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRG-RIEKV 133 (658)
Q Consensus 72 ~v~~~Grv~~~---------r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G-~l~~~ 133 (658)
.++|.|||.++ +..| ++.=++|.|.+|.|++.+-.+....|. ..|..|+++.+++ .|++.
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~~~f~-~~l~eG~vy~Is~~~V~~a 85 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFNDFATKFN-EILQEGKVYYVSKAKLQPA 85 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHHHHHHHH-HHSCSSSEEEEESCEEEEC
T ss_pred ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHHHHHHHH-hhcccCcEEEECCcEEEEC
Confidence 47888888843 1123 467778999999999999776544332 3589999999987 44443
No 143
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=65.68 E-value=5.3 Score=43.23 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=62.2
Q ss_pred eecccCCccCCcEEEEEEEEEee---ec------CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL---RR------QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~---R~------~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v 572 (658)
..|.++.... ..++|.|||.++ |. .| ++.-++|.|.+|.|++++-.+.. ..+...|..|+++.|++.-
T Consensus 4 ~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~-~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 4 YPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFNDAV-DRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp CCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETHHH-HHHTTTCCTTCEEEEESCE
T ss_pred eeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHHHH-HHHHHheecCCEEEEcCCE
Confidence 3455554433 357899999853 32 23 57778999999999999976422 1344579999999999654
Q ss_pred EecCCC--CCCCCceEEEEEEEEEEecC
Q psy8087 573 EKVPEG--KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 573 ~~~~~~--~~~~g~~El~~~~i~vls~~ 598 (658)
.+...+ +...+.+||....-+.+.++
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 433322 22347799998765555554
No 144
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=64.77 E-value=48 Score=30.14 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCccceeecccCCccCCcEEEEEEEEEeee----------cCC--------CceEEEEEEeCCEEEEEEEcCCccchHHh
Q psy8087 496 LPPAVRIKIKDGEKYRDKRVTIFGWVHRLR----------RQG--------KGLMFVTLRDGSGFIQCVLADILCQTEHA 557 (658)
Q Consensus 496 ~~~~~~~~i~~~~~~~g~~V~v~GwI~~~R----------~~G--------kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~ 557 (658)
+..+.+.+|.++... .+-|+|.|+|-.+- ..| ..++=+.|-|.+|.|-+.+=.+ .+
T Consensus 11 ~~kp~~~kI~dL~pg-~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e-----~~ 84 (145)
T 1wjj_A 11 KRKPVFVKVEQLKPG-TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARND-----QV 84 (145)
T ss_dssp CCCCSSCCSTTCCTT-CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTT-----HH
T ss_pred ccCccceEHHHcCCC-CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecC-----Cc
Confidence 445667778876543 34488888886542 122 1577788999999987777543 23
Q ss_pred ccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 558 LLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 558 ~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
..|..||+|.+++-..+-- .|.++|.+..+--+.+.
T Consensus 85 ~~l~~Gd~v~i~na~v~~~-----~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 85 DLMKPGATVILRNSRIDMF-----KGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp HHTCTTCEEEEEEEEEEEE-----TTEEEEEECTTCCBCCC
T ss_pred CcCCCCCEEEEeccEEEeE-----CCEEEEEECCCEEEEEC
Confidence 4588999999997544332 57789988766444443
No 145
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=64.76 E-value=30 Score=29.69 Aligned_cols=59 Identities=17% Similarity=-0.033 Sum_probs=42.7
Q ss_pred CcEEEEeEEeeccee--cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEE-EEeEe
Q psy8087 70 ITNINIPAIPGPPAI--PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEK 132 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~--~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~-G~l~~ 132 (658)
+..|++.|+|..+-. .++....+.|.|.+|.|-+.+=.+. ....+..|++|.+. |.+..
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~----~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA----ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG----CCCCCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc----cccccCCCCEEEEEEEEEEE
Confidence 467999999988543 3344456899999999888876532 12368999999999 55543
No 146
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=61.86 E-value=40 Score=30.82 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=49.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-eC------------CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEec
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR-DG------------SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 575 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-d~------------~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 575 (658)
.|.|.|+|.+ +|. .|+.++-+.|- +. +..+.|++-..... .....|+.|+.|.|+|.+...
T Consensus 18 ~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae-~~~~~l~KG~~V~VeGrL~~~ 96 (153)
T 1z9f_A 18 KIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAE-FARTYLTKGRLVLVEGEMRMR 96 (153)
T ss_dssp CEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHH-HHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHH-HHHhhCCCCCEEEEEEEEEec
Confidence 4778888866 443 34444434441 11 22477777643221 233459999999999999875
Q ss_pred CCC-C--CCCCceEEEEEEEEEEecC
Q psy8087 576 PEG-K--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 576 ~~~-~--~~~g~~El~~~~i~vls~~ 598 (658)
.-. + .+...+||.|+.+++|...
T Consensus 97 ~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 97 RWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp C-------CCCEEEEEEEEEEECC--
T ss_pred eEECCCCCEEEEEEEEEEEEEEccCC
Confidence 411 1 1123489999999999754
No 147
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=61.85 E-value=18 Score=32.87 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=39.1
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+.|+|.|||.+.--.|+ .|..-..+++.|+|.+.... .-..+..|.|.|++..
T Consensus 41 fvGk~VriVGkV~~~~~~G~--~~~l~s~Dg~~VtV~l~~pL-------~~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 41 FIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPL-------DEEISGIVEVVGRVTA 96 (142)
T ss_dssp STTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCC-------SSCCCSEEEEEEEECT
T ss_pred hCCCEEEEEEEEeEEcCCCC--EEEEEeCCCcEEEEEeCCCC-------CccCCCEEEEEEEECC
Confidence 67999999999998744454 55444444567888876431 1234679999999965
No 148
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=61.05 E-value=54 Score=30.53 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=50.0
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e--------CCEEEEEEEcCC-ccchHHhccCCCCcEEEEEEEEE
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR------D--------GSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr------d--------~~~~iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
+|.|.|+|.+ +|. .|+.++-+.|- + .+..+.|++-.. ... .....|+.|+.|.|+|.+.
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe-~~~~~l~KG~~V~VeGrL~ 103 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK-IALQYLHKGSKVYIEGKLQ 103 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH-HHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH-HHHHhCCCCCEEEEEEEEE
Confidence 5888888876 454 34444444441 1 123478888654 221 2334599999999999998
Q ss_pred ecCCC-C--CCCCceEEEE----EEEEEEecC
Q psy8087 574 KVPEG-K--SAPGGHELKV----DYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~-~--~~~g~~El~~----~~i~vls~~ 598 (658)
...-. + .+...+||.| .++++|...
T Consensus 104 ~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 104 TRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 75321 1 1123478887 589998754
No 149
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=60.55 E-value=58 Score=28.00 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=46.3
Q ss_pred cEEEEEEEEEe---ee--cCCCceEEEEEE-----eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe-c-CCCC-
Q psy8087 513 KRVTIFGWVHR---LR--RQGKGLMFVTLR-----DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK-V-PEGK- 579 (658)
Q Consensus 513 ~~V~v~GwI~~---~R--~~Gkkl~Fi~Lr-----d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~-~-~~~~- 579 (658)
..|.|.|+|.+ .| ..|.+++=+.|- +....|-|++...... ...+..|+-|.|+|.+.. . -..+
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe---~~~~~kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE---GMNLEVGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST---TCCCCTTCEEEEEEEEEEEECC----
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh---HHhhcCCCEEEEEEEEEecceEECCC
Confidence 45778888854 22 234333222221 3344578887754322 123569999999999964 2 1111
Q ss_pred -CCCCceEEEEEEEEEEe
Q psy8087 580 -SAPGGHELKVDYWEVVG 596 (658)
Q Consensus 580 -~~~g~~El~~~~i~vls 596 (658)
.+.--+||.|++++.|.
T Consensus 89 G~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 89 GKNKLILTVFARDISVVP 106 (107)
T ss_dssp ----EEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEEcc
Confidence 11234899999999875
No 150
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=59.78 E-value=35 Score=30.88 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE--------------eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR--------------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr--------------d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
.|.|.|+|.+ +|. .|+.++-+.|- +.+..+.|++-..... .....|+.||.|.|+|.+..
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE-VASEYLRKGSQVYIEGQLRT 85 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHH-HHHHhcCCCCEEEEEEEEEe
Confidence 5778888866 453 34445544552 1234588888764221 23345999999999999977
Q ss_pred cCC-CCCC--CCceEE---EEEEEEEEecC
Q psy8087 575 VPE-GKSA--PGGHEL---KVDYWEVVGLA 598 (658)
Q Consensus 575 ~~~-~~~~--~g~~El---~~~~i~vls~~ 598 (658)
..- .+.. .-.+|| .+++|+.|...
T Consensus 86 ~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 86 RKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred eEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 431 1111 123688 78889888654
No 151
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=59.58 E-value=5.1 Score=46.76 Aligned_cols=63 Identities=10% Similarity=-0.029 Sum_probs=45.1
Q ss_pred cCCcEEEEeEEeeccee--cC-CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCC--ccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAI--PG-KGLMFVTLRDGSGFIQCVLADILCQTEHALLLST--ESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~--~g-k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~--es~V~v~G~l~~~ 133 (658)
..|+.|+|.|.|.+... .+ +...=+.+.|++|.+++++-... |....++. |..+.|.|++...
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~---~~~~~~~~~~g~~~~~~G~~~~~ 230 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQD---YLQTYLKQLTGKEVFVTGTVKSN 230 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCC---TTHHHHHTTCSSCEEEEEEECSC
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcH---HHHhhCccCCCCEEEEEEEEEEc
Confidence 45678999999987532 23 33455677899999999886532 22234667 9999999999863
No 152
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=59.57 E-value=38 Score=34.57 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=51.3
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e-------CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEec
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR------D-------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 575 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr------d-------~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 575 (658)
.|.|.|+|.+ +|. .|+.++-+.|- | .+..+.|++-..... .... |+.||.|.|+|.+...
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae-~~~~-l~KG~~V~V~GrL~~~ 208 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE-NMKE-LRKGDPVMIMGRLVNE 208 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH-HHTT-CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHH-HHHh-cCCCCEEEEEEEEeee
Confidence 4778888876 454 34444444441 1 122478887764221 2335 9999999999999875
Q ss_pred CCC-C--CCCCceEEEEEEEEEEec
Q psy8087 576 PEG-K--SAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 576 ~~~-~--~~~g~~El~~~~i~vls~ 597 (658)
.-. + .+...+||.+++|++|..
T Consensus 209 ~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 209 GWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp ECC------CEEEEEEEEEEEECCC
T ss_pred eEECCCCcEEEEEEEEEEEEEEecc
Confidence 411 1 112248999999999964
No 153
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=59.49 E-value=19 Score=36.02 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=49.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE----------eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR----------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE- 577 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr----------d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~- 577 (658)
.|.|.|+|.+ +|. .|+.++-+.|- +.+..+.|++-..... ... .|+.||.|.|+|.+....-
T Consensus 130 ~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae-~~~-~l~KG~~V~V~G~l~~~~~~ 207 (264)
T 2fxq_A 130 QVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAE-WAS-ELRKGDGLLVIGRLVNDSWT 207 (264)
T ss_dssp EEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHH-HHT-TCCTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHH-Hhh-hcCCCCEEEEEEEEEeeEEE
Confidence 4667777765 343 23333333331 2233588888753221 234 8999999999999977431
Q ss_pred CCC--CCCceEEEEEEEEEEecC
Q psy8087 578 GKS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 578 ~~~--~~g~~El~~~~i~vls~~ 598 (658)
.+. +...+||.+++++.|...
T Consensus 208 ~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 208 SSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp CTTSCEEEEEEEEEEEEECCCC-
T ss_pred CCCCCEEEEEEEEEEEEEECccc
Confidence 111 112379999999998653
No 154
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=58.64 E-value=22 Score=30.97 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=39.3
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEc-CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD-~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..|+.|+|.|+|.+.+ |+ .| .|.. ..+.|+|.++.+. .+..+..|.|.|++...
T Consensus 16 ~~g~~VrivGkV~~~~--g~--~~-~l~s~d~~~Vtv~l~~~~-------~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVT--GN--TL-LMQTSDLGNVEIAMTPDS-------DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp GTTSEEEEEEEEEEEE--TT--EE-EEECTTSCEEEEECCSSC-------CGGGCSEEEEEEEECTT
T ss_pred hCCCeEEEEEEEeeeC--CC--EE-EEEeCCCCEEEEEeCCCC-------CcccCcEEEEEEEEcCC
Confidence 5789999999999877 43 44 4554 3457887776542 34468999999999854
No 155
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=56.20 E-value=48 Score=31.66 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=48.6
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e--------CCEEEEEEEcCC-ccchHHhccCCCCcEEEEEEEEE
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR------D--------GSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr------d--------~~~~iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
+|+|.|+|.+ +|. .|+.++-+.|- | .+..+.|++-.. ... .....|+.|+.|.|+|.+.
T Consensus 28 kV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe-~~~~yL~KGs~V~VeGrL~ 106 (193)
T 3pgz_A 28 KVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVK-VVEQYLKKGSKIYIEGQLQ 106 (193)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHH-HHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHH-HHHhhcCCCCEEEEEEEEE
Confidence 5778888866 454 34344433331 1 122377877652 211 1234599999999999998
Q ss_pred ecCC-CCC--CCCceEEEEE----EEEEEecC
Q psy8087 574 KVPE-GKS--APGGHELKVD----YWEVVGLA 598 (658)
Q Consensus 574 ~~~~-~~~--~~g~~El~~~----~i~vls~~ 598 (658)
...- .+. +.-.+||.|+ +|++|...
T Consensus 107 trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 107 TRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 6431 111 1234788888 68888654
No 156
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=56.12 E-value=38 Score=30.40 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEec
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~ 597 (658)
.++|++-..... .....|+.|+-|.|+|.+.... .+.....+.+.+++++.|+.
T Consensus 66 ~i~vv~wGk~AE-~~~~yl~KGs~V~VeGrL~tr~-~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 66 QMPVIVSGHENQ-AITHSITVGSRITVQGFISCHK-AKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEEEEESTGGG-GGGTTCCTTCEEEEEEEEEEEC-TTTTSCEEEEEEEEEEETTS
T ss_pred EEEEEEEhHHHH-HHHHhcCCCCEEEEEEEEEEEE-CCCCCEEEEEEEEEEEECcC
Confidence 378888765332 1234599999999999998763 22222357788999999864
No 157
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=55.04 E-value=60 Score=32.28 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=36.4
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCC--CCCCceEEEEEEEEEEecC
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGK--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~--~~~g~~El~~~~i~vls~~ 598 (658)
.+.|++-..... .....|+.|+.|.|+|.+....-.. .+.-.+||.++++++|...
T Consensus 53 ~~~v~~~g~~Ae-~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLGRQAE-MWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEETHHHH-HHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEchHHH-HHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 477777653221 2334699999999999997653211 1123479999999999754
No 158
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=52.80 E-value=71 Score=26.80 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred cCCcEEEEeEEeec--ceec--CCCeEEEEEEcC---CeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGP--PAIP--GKGLMFVTLRDG---SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~--~r~~--gk~l~Fi~LrD~---~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.++|.|-|.. +.+. +..+.| .|.|+ ...|.|....-... .++.|.-|.++|.+.+
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~GilPD-----lFrEGqgVV~~G~l~~ 71 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAVPD-----TFKPGVEVIIEGGLAP 71 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCCCT-----TCCTTCEEEEEEEECT
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCCCc-----cccCCCeEEEEEEEeC
Confidence 45788999999963 5554 456788 77888 77899988765422 3678999999999963
No 159
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=52.10 E-value=1e+02 Score=27.96 Aligned_cols=74 Identities=18% Similarity=0.044 Sum_probs=50.8
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
=..|++.|-|-.. +.|. +.|+|++|.+-+-.-.+.. .-.-.++.|..|-|-|.+... ..+-.|.+-+
T Consensus 58 ~s~VWmQG~VV~~-~~g~----~~LdDgTG~~~v~g~~~vp--~g~p~l~~G~YVMV~G~v~~~------s~eP~i~AvK 124 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRGE----ARLRDPSGDFSVRGLERVP--RGRPCLVPGKYVMVMGVVQAC------SPEPCLQAVK 124 (150)
T ss_dssp CSEEEEEEEEEEE-ETTE----EEEEETTEEEEEECGGGSC--CCSCCCSTTCEEEEEEEEEEC------SSSCEEEEEE
T ss_pred eEEEEEEeEEEEe-CCCe----EEEECCCceEEEeeccccC--CCCcccCCCCEEEEEEEEEec------CCCceEEEEE
Confidence 3579999999997 5553 7999999985442221110 111248899999999999763 3467788877
Q ss_pred EEEEecC
Q psy8087 592 WEVVGLA 598 (658)
Q Consensus 592 i~vls~~ 598 (658)
+.=||..
T Consensus 125 m~DLS~~ 131 (150)
T 3mxn_B 125 MTDLSDN 131 (150)
T ss_dssp EEECCSC
T ss_pred eeeCCCC
Confidence 7766653
No 160
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=47.79 E-value=86 Score=26.57 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred EEEEeEEeecc-----eecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEE-EEeEe
Q psy8087 72 NINIPAIPGPP-----AIPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~~-----r~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~-G~l~~ 132 (658)
.|++.|+|..+ ++.|+ .+.=+.|.|.+|.|.+.+=.+. +..|++|.+. |.+..
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~--------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ--------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC--------CCTTEEEEEEEEEEEE
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc--------cCCCCEEEEEeeEEeE
Confidence 36777776552 33453 2667889999998888775442 8999999999 66653
No 161
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=47.61 E-value=38 Score=33.00 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCcEEEEeEEeecceecCC-------CeEEEEEEcCCeE---EEEEEecccchhh--hhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIPGK-------GLMFVTLRDGSGF---IQCVLADILCQTE--HALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk-------~l~Fi~LrD~~~~---iQvv~~~~~~~~~--~~~~l~~es~V~v~G~l~~~ 133 (658)
.-+.|.|.|+|...+-.-+ ...|+.|-|.||. |.|.++....... .......|.+|.|.|.+..-
T Consensus 84 PI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNW 160 (220)
T ss_dssp EECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEEC
T ss_pred ccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEee
Confidence 4467999999999875543 4689999999985 7776664321110 11124579999999999864
No 162
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=43.28 E-value=2.1e+02 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=34.0
Q ss_pred EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEE
Q psy8087 541 GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEV 594 (658)
Q Consensus 541 ~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~v 594 (658)
..+.|++-..... ...+.|+.||.|.|+|.+....-. + .+...+||.|++|.+
T Consensus 53 ~wi~VvawgklAE-~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 53 LFLTCSVWRQAAE-NVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEEEhHHHH-HHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 3477777653221 233469999999999999875421 1 123458999998864
No 163
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=41.49 E-value=16 Score=38.82 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.7
Q ss_pred CccceecchhHHHHHHhcc
Q psy8087 417 PHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~ 435 (658)
|.-|||||+|||+..+...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999998753
No 164
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=41.33 E-value=15 Score=39.47 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=30.1
Q ss_pred CccceecchhHHHHHHhcccCcchhhHHHHHhhhhhhhhhh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKLA 457 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~~K~~ 457 (658)
||---|+|+|||+++|-|..|+=|+=+|. +-++.+.+..
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf~--pii~~i~~~~ 270 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLFR--TLIQAVAKVT 270 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHHH--HHHHHHHHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhHH--HHHHHHHHHh
Confidence 56788999999999999999999996662 4444444443
No 165
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=41.27 E-value=1e+02 Score=31.33 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=49.9
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEe-------------CCEEEEEEEcCCccchHHhcc-CCCCcEEEEEEEEEe
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLRD-------------GSGFIQCVLADILCQTEHALL-LSTESSVQFRGRIEK 574 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lrd-------------~~~~iQvv~~~~~~~~~~~~~-L~~gs~V~V~G~v~~ 574 (658)
.|.|.|+|.+ +|. .|+.++-+.|-- .+..+.|++-..... ..... |+.|+.|.|+|.+..
T Consensus 7 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae-~~~~~~l~KG~~V~VeG~L~~ 85 (301)
T 1se8_A 7 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAE-WQAERNLKGGDAVVVEGTLEY 85 (301)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHH-HHHHTCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHH-HHHhhCCCCCCEEEEEEEEEe
Confidence 4777788755 343 343344334311 122478887753221 23356 899999999999986
Q ss_pred cCC-CC--CCCCceEEEEEEEEEEecC
Q psy8087 575 VPE-GK--SAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 575 ~~~-~~--~~~g~~El~~~~i~vls~~ 598 (658)
..- .+ .+.-.+||.+++|++|...
T Consensus 86 r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 86 RQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEC-----CEEEEEEEEEEEEECSSC
T ss_pred eeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 431 11 1112478999999998754
No 166
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=40.03 E-value=16 Score=39.59 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 630 SRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 630 ~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
=.-.+++.+|.+.+|+.|...||.||.||
T Consensus 64 P~g~~~~~~i~~~ir~~~~~~G~~ei~tP 92 (458)
T 2i4l_A 64 PLGHRVLKKIEQIVREEQNRAGAIELLMP 92 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEEcC
Confidence 35688999999999999999999999999
No 167
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=39.93 E-value=12 Score=37.32 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=42.9
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-CCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-GIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
.+...||+-++|| ||.- -.-|.+. |++ --|.++=+--|+|||.|.|-|.+||-|
T Consensus 134 AwGLGWEVWldGM-EITQ-----------FTYFQQvGGi~-------------c~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 134 AWGVGWEVWLDGM-EITQ-----------FTYFQQIGGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp EEEEEEEEEETTE-EEEE-----------EEEEEEBTTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred cccccceeeEcce-eeeh-----------hhhhhhcCCcc-------------cCccceeecccHHHHHHHHhCCCceec
Confidence 4678999999999 8852 1222222 233 147788999999999999999999999
Q ss_pred hhH
Q psy8087 441 KYQ 443 (658)
Q Consensus 441 vi~ 443 (658)
...
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 854
No 168
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=39.83 E-value=15 Score=37.34 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCcEEecCC
Q psy8087 636 RSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 636 Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+.+.+.+|++|..+||.||+||
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s 77 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGY 77 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCc
Confidence 45688999999999999999876
No 169
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=39.44 E-value=1.4e+02 Score=25.46 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=34.2
Q ss_pred CcEEEEEEEEEeeecC---CCce-EEEEEEeCCEE-----EEEEEcCCccchH-HhccCCCCcEEEEEEEEEecC
Q psy8087 512 DKRVTIFGWVHRLRRQ---GKGL-MFVTLRDGSGF-----IQCVLADILCQTE-HALLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~---Gkkl-~Fi~Lrd~~~~-----iQvv~~~~~~~~~-~~~~L~~gs~V~V~G~v~~~~ 576 (658)
|...++-|+|+.+..- ..++ -|...-|+.+. +=+-+.++..... ....|+.|++|.|+|+++..+
T Consensus 3 ~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 3 GSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp -CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred ccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 5678899999999761 1222 33333333321 1122222222112 345699999999999998765
No 170
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=39.34 E-value=18 Score=38.50 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.5
Q ss_pred CccceecchhHHHHHHhcc
Q psy8087 417 PHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~ 435 (658)
|.-|||||+|||+..+...
T Consensus 300 pavGf~igveRl~~~l~e~ 318 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQAV 318 (423)
T ss_dssp CEEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHhc
Confidence 3458999999999998753
No 171
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=38.96 E-value=73 Score=27.03 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=30.8
Q ss_pred EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEE
Q psy8087 542 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 542 ~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
.|+|++-+... +.+..+..|+.|.|+|.+..+. .....+-++++.++
T Consensus 49 ~i~vv~wGk~A--E~~~~~~kGs~V~VeGrL~trs---~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 49 SIEALGAGKMA--SVLDRIAPGTVLECVGFLARKH---RSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEEETHHH--HHHTTSCTTCEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EEEEEEEhHHH--HHHhhcCCCCEEEEEEEEEeCc---CCCCeeEEEEeccc
Confidence 38889877432 3344689999999999997643 12344666766654
No 172
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=37.57 E-value=19 Score=37.55 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 632 VLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 632 ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
-.+.+..|.+.+|+.|...||.||.||
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP 61 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPP 61 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCc
Confidence 356788999999999999999999999
No 173
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=37.56 E-value=13 Score=37.20 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=43.1
Q ss_pred cCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-CCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcc
Q psy8087 361 PALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-GIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439 (658)
Q Consensus 361 ~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ir 439 (658)
..+...||+-++|| ||.- -.-|.+. |++ --|.++=+--|+|||.|.|-|.+||-
T Consensus 145 GAWGLGWEVWldGM-EVTQ-----------FTYFQQvGGi~-------------c~pv~~EITYGLERlamylQ~vd~vy 199 (311)
T 3rf1_A 145 GAWGLGWEVWLDGM-EVTQ-----------FTYFQQVGGIA-------------VDLVSAEITYGLERIAMYLQNVDNVY 199 (311)
T ss_dssp TEEEEEEEEEETTE-EEEE-----------EEEEEEETTEE-------------CSSCCEEEEEEHHHHHHHHTTCSSGG
T ss_pred cccccceEEEEcCe-eEee-----------eeeeeeeCCcc-------------ccccceeeehhHHHHHHHHhCCCeee
Confidence 34678899999999 8852 1222222 222 13778889999999999999999999
Q ss_pred hhhHH
Q psy8087 440 DKYQL 444 (658)
Q Consensus 440 dvi~f 444 (658)
|...-
T Consensus 200 Dl~w~ 204 (311)
T 3rf1_A 200 DIVWS 204 (311)
T ss_dssp GSEEE
T ss_pred ecccc
Confidence 97553
No 174
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=37.14 E-value=77 Score=26.40 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=44.3
Q ss_pred CccCCcEEEEEEEEEeeecCCC---ceEEE-EEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGK---GLMFV-TLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gk---kl~Fi-~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~ 576 (658)
.+..|+-|.|+|-|..+|+.+. .-.|+ .+||.... -.+.++-.+.+......|..|++-.|.|.+....
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvealsngsvativgqvhqvq 119 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTTCCTTSEEEEEEECCCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHhhcCCceeeEeeeeeeee
Confidence 4567999999999999876421 23343 45766542 1222332222335567899999999999986544
No 175
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=36.84 E-value=1.5e+02 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=22.5
Q ss_pred EEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 101 IQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 101 iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
++|++-.+..+. ....++.|+.|.|+|.|+..
T Consensus 50 ~~vv~~g~~Ae~-~~~~l~KG~~V~V~G~L~~~ 81 (104)
T 1txy_A 50 MPVIVSGHENQA-ITHSITVGSRITVQGFISCH 81 (104)
T ss_dssp EEEEEESSTTHH-HHTTCCTTCEEEEEEEEEC-
T ss_pred EEEEEEhHHHHH-HHhhCCCCCEEEEEEEEEec
Confidence 777776554221 12469999999999999865
No 176
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=36.53 E-value=76 Score=36.92 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=62.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCccceee-ccCC-cceeeccCHHHHH-HHhc---c-cC--CcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGSTLFSL-NFFG-EPAYLTQSSQLYL-ETCL---P-AL--GDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~~~F~~-~~~~-~~~~L~~Spqlyl-k~li---~-g~--~rvfeI~~~ 226 (658)
..+|+.|...||.||-|-.++.... .+......+ |-.. ..-.||.|-=--| +.+. . +. -|+||||++
T Consensus 496 ~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~V 575 (795)
T 3pco_B 496 KRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLR 575 (795)
T ss_dssp HHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEE
T ss_pred HHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeE
Confidence 4789999999999999988864311 011111221 2222 2247887733222 2221 2 33 379999999
Q ss_pred eecCCCCCccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLIC 265 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~ 265 (658)
|...+.. ..+..|..+|=+-++. .|+.|+...+|.++.
T Consensus 576 f~~~~~~-~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~ 626 (795)
T 3pco_B 576 FVPDTQA-PLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLD 626 (795)
T ss_dssp EEECTTS-STTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTT
T ss_pred EecCCCc-ccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHH
Confidence 9875432 2344566676654443 378888777777664
No 177
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=36.31 E-value=23 Score=38.79 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.++++++|+.+.++||.||.||
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P 233 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPP 233 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecC
Confidence 5678999999999999999999999998
No 178
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=36.19 E-value=15 Score=42.48 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=24.3
Q ss_pred CccceecchhHHHHHHhcccCcchhhHH
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
||---|+|+|||+++|-|..|.=|+ +|
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f 271 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VL 271 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HS
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HH
Confidence 4667899999999999999999999 55
No 179
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=35.74 E-value=21 Score=37.70 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 633 LLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 633 fr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+++..|...+|+.|...||.||.||
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP 62 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSG 62 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECC
Confidence 56788999999999999999999999
No 180
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=35.55 E-value=37 Score=33.10 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=41.2
Q ss_pred EEEEeEEeecc---e------ecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEe
Q psy8087 72 NINIPAIPGPP---A------IPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 130 (658)
Q Consensus 72 ~v~~~Grv~~~---r------~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l 130 (658)
.++|.|||.++ | ..| .+.-++|.|.+|.|++.+-.+....|. ..|..|+++.+++.-
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~~~~~-~~l~~G~vy~i~~~~ 85 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQVDKFF-PLIEVNKVYYFSKGT 85 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHHHHHG-GGCCTTCEEEEECCE
T ss_pred ceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChHHHHHhh-hhcccCCEEEECCCE
Confidence 57899999864 2 123 356678999999999998875443332 358999999998743
No 181
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=35.35 E-value=79 Score=25.08 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=34.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
.|+. +.|.|.++...| +|++|-++ +..++..+.........++.||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G---~fV~l~~~---~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG---AFINLNEQ---VRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEEETT---EEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE---EEEEECCC---CEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 3553 889999999887 69999653 455665432111111469999999875
No 182
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=34.59 E-value=16 Score=39.44 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.4
Q ss_pred CCccceecchhHHHHHHh
Q psy8087 416 TPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 416 pP~gG~GiGidRL~m~l~ 433 (658)
-|.-|||||+|||+++|-
T Consensus 335 ~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 335 VPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHH
Confidence 367799999999999884
No 183
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.22 E-value=24 Score=37.91 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|.+.+++.+.+.||.||.||
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP 197 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPP 197 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 3456789999999999999999999999
No 184
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=34.14 E-value=24 Score=38.95 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.++++++|+.+.++||.||.||
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P 226 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTP 226 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 4568899999999999999999999999
No 185
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=33.47 E-value=24 Score=38.41 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++..|.+.+|+.|...||.||.||
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP 71 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTP 71 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 3467899999999999999999999999
No 186
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=33.16 E-value=22 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=52.8
Q ss_pred CchHHHhhhCCcEEEcCCcccc-ccCCCCccceeeccCCcceeeccCHHHHHHHhcc----cCCcEEEEeeeeecC----
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQ-TQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP----ALGDVYCIAQSYRAE---- 230 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~-~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~----g~~rvfeI~~~FR~E---- 230 (658)
+.+-+||.++|-.-|..--|.+ .++ .-.| +|+ | ...++...+. -..|+-..-+|.|+-
T Consensus 10 ~~Fl~FF~~kgH~~vpSsslvp~~Dp---tLLf-tnA-G--------M~~FKp~flG~~~p~~~r~t~sQkCiRag~~hN 76 (465)
T 1yfs_A 10 ELFLSFFEKKGHTRVKSAPLVPENDP---TLLF-VNA-G--------MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHN 76 (465)
T ss_dssp HHHHHHHHTTTCEECCCCCSSCTTCT---TCSS-CCS-T--------TSTTHHHHHTSSCCSCSEEEEEEEEECEETTEE
T ss_pred HHHHHHHHhCCCEEecCCCcccCCCC---Ccce-ecc-c--------hhhhhHHhcCCCCCCCCceeccccccccCCCcc
Confidence 3566899999999997755543 222 1112 111 0 0111111111 267898999999942
Q ss_pred ---C-CCCccCcceeeeeeeEeecCCH--HHHHHHHHHHH
Q psy8087 231 ---N-SRTRRHLAEYTHVEAECAFLTF--DDLLDKLEDLI 264 (658)
Q Consensus 231 ---~-~~~~rHl~EFt~lE~e~a~~d~--~~~m~~~e~li 264 (658)
+ ..|.||..=|.|| --.+|.|| ++.+..+=+|+
T Consensus 77 DlenVG~t~rHhTfFEML-GNfSFGDYFK~eAI~~AwE~L 115 (465)
T 1yfs_A 77 DLEQVGYTSRHHTFFEML-GNFSFGDYFKKEAIEYAWEFV 115 (465)
T ss_dssp CGGGBTTBSSCCSEEEEE-EEEESSSCCHHHHHHHHHHHH
T ss_pred cHhhcCCCCCccchheec-cccchhhhhHHHHHHHHHHHH
Confidence 1 2366999888888 35678885 45555444444
No 187
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=33.06 E-value=2.7e+02 Score=25.04 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=33.8
Q ss_pred CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccce
Q psy8087 88 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKV 140 (658)
Q Consensus 88 ~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~ 140 (658)
.++=+.|-|.+|.|-+.+-.+.. ..++.|++|.+++.....-.+.+++
T Consensus 62 ~V~~~lVgDeTG~I~ftlW~e~~-----~~l~~Gd~v~i~na~v~~~~G~~~L 109 (145)
T 1wjj_A 62 RIVECLIGDETGCILFTARNDQV-----DLMKPGATVILRNSRIDMFKGTMRL 109 (145)
T ss_dssp CCEEEEEECSSCEEEEEECTTHH-----HHTCTTCEEEEEEEEEEEETTEEEE
T ss_pred eEEEEEEEcCCcEEEEEEecCCc-----CcCCCCCEEEEeccEEEeECCEEEE
Confidence 47778999999998888765422 2478999999988765433333333
No 188
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.70 E-value=20 Score=39.42 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.++|..|.+.+|+.|..+||.||.||
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP 106 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTP 106 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECc
Confidence 4578899999999999999999999999
No 189
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=32.27 E-value=2e+02 Score=26.41 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=31.2
Q ss_pred EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC-CC--CCCCceEEEEEEE
Q psy8087 541 GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-GK--SAPGGHELKVDYW 592 (658)
Q Consensus 541 ~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~--~~~g~~El~~~~i 592 (658)
..+.|++-..... .....|+.||.|.|+|.+....- .+ .+...+||.|+.|
T Consensus 53 ~~~~v~~wg~~Ae-~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 53 LFLRCNIWREAAE-NVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEEEHHHHH-HHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEEEehHHHH-HHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 3577777643211 23356999999999999977531 11 1112377877754
No 190
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=32.07 E-value=23 Score=35.93 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhcCCcEEecCC
Q psy8087 636 RSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 636 Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..++.+.+|++|...||.||.||
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP 95 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTP 95 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECC
Confidence 36789999999999999999998
No 191
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=31.67 E-value=17 Score=41.84 Aligned_cols=28 Identities=25% Similarity=0.068 Sum_probs=25.3
Q ss_pred CccceecchhHHHHHHhcccCcchhhHH
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
++--.|+|+|||+|+|-|.+|+=|++..
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDAIFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHHHCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHhhHH
Confidence 6889999999999999999999999443
No 192
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=30.56 E-value=28 Score=37.78 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 633 LLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 633 fr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+++..|...+|+.|...||.||.||
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP 68 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAP 68 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 46789999999999999999999999
No 193
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=30.51 E-value=30 Score=38.41 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.++++++|+.+.++||.||.||
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P 300 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLP 300 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecc
Confidence 4568889999999999999999999998
No 194
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.15 E-value=33 Score=37.51 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.++++++++.+.++||.||.||
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P 210 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAP 210 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 4568899999999999999999999998
No 195
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.52 E-value=32 Score=36.87 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 632 VLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 632 ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
-.+++.+|.+.+++.+.++||.||.||
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP 191 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLP 191 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 356788999999999999999999998
No 196
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.00 E-value=33 Score=37.70 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|++++++.+.++||.||.||
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P 244 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVP 244 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 4467788899999999999999999998
No 197
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=28.87 E-value=43 Score=36.00 Aligned_cols=58 Identities=21% Similarity=0.051 Sum_probs=42.5
Q ss_pred EEEEeEEeecc---ee------cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeE
Q psy8087 72 NINIPAIPGPP---AI------PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 72 ~v~~~Grv~~~---r~------~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~ 131 (658)
.++|.|||.++ |. .| .+.-++|.|.+|.|++.+-++....|. ..|..|+++.+++...
T Consensus 15 ~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~~~f~-~~l~eG~vy~Is~~~V 81 (444)
T 4gop_C 15 RWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFNDAVDRFY-PLLQENHVYLISKARV 81 (444)
T ss_dssp SCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETHHHHHHT-TTCCTTCEEEEESCEE
T ss_pred ceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHHHHHHHH-HheecCCEEEEcCCEE
Confidence 57899999842 31 23 467789999999999999876544342 3589999999987433
No 198
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=28.83 E-value=59 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=31.5
Q ss_pred EEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCc--EEEEEEEEEecCCCCCCCCce
Q psy8087 518 FGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTES--SVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 518 ~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs--~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.|+...+... --||.|++++..+|+-++... -...++. =|.|.|++..-.-...++|.+
T Consensus 59 ~Grs~~vtsn---ynFv~v~gdsa~vqLAfn~p~------Ys~Gpng~GGItf~G~~s~~km~~dKKGn~ 119 (176)
T 3fyf_A 59 NGIMRFVSSN---TNYVEVNDGQGIIQTAFTNFV------YNWSPNGLGGVTVQGNVNGISMRQDKDGNV 119 (176)
T ss_dssp TSCEEECCTT---TSEEEEETTEEEEECSSGGGC------CC-------CCEEEEEEEEEEEEECTTCCE
T ss_pred CCceEEcCCC---cceEEEeCCeEEEEEeccccc------cccCCCCCccEEEeeeecceEEEEccCCcE
Confidence 3444444433 349999999999998443211 0134555 488888876433222345554
No 199
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=28.69 E-value=30 Score=39.23 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|.+.+|+.+.+.||.||.||
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP 296 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGP 296 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 4578899999999999999999999999
No 200
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=28.65 E-value=27 Score=37.37 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.1
Q ss_pred CccceecchhHHHHHHhcc
Q psy8087 417 PHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~ 435 (658)
|.-|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 4568999999999998754
No 201
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=28.64 E-value=33 Score=38.11 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++.+|.+.+|+.+...||.||.||
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP 72 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMP 72 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 5678899999999999999999999999
No 202
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=28.51 E-value=31 Score=39.12 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++..|.+.+|+.+...||.||.||
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP 296 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTP 296 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 5578999999999999999999999999
No 203
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=28.36 E-value=29 Score=36.34 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhcCCcEEecCC
Q psy8087 636 RSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 636 Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+.+.+.+|++|...||.||+||
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p 125 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGP 125 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECc
Confidence 34577889999999999999987
No 204
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=27.16 E-value=2e+02 Score=26.24 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=36.5
Q ss_pred EEEEeEEeec---ceec--CCCeEEEEE------EcC--------CeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 72 NINIPAIPGP---PAIP--GKGLMFVTL------RDG--------SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~---~r~~--gk~l~Fi~L------rD~--------~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+|.|||.+ +|.. |+.++-+.| +|. +..+.|++-.+..+ .....|+.|+.|.|+|.|+.
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae-~~~~~l~KG~~V~VeG~L~~ 88 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE-IVGEYLRKGSKIYIEGSLRT 88 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH-HHHhhcCCCCEEEEEEEEEe
Confidence 4888888887 4543 433443333 121 22367776654322 12235999999999999975
Q ss_pred C
Q psy8087 133 V 133 (658)
Q Consensus 133 ~ 133 (658)
.
T Consensus 89 ~ 89 (158)
T 3tqy_A 89 R 89 (158)
T ss_dssp E
T ss_pred e
Confidence 3
No 205
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=26.72 E-value=2.4e+02 Score=25.15 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=37.5
Q ss_pred EEEEeEEeec---cee--cCCCeEEEEEE-c-------------CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 72 NINIPAIPGP---PAI--PGKGLMFVTLR-D-------------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~---~r~--~gk~l~Fi~Lr-D-------------~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+|.|||.+ +|. .|+.++-+.|. + .+..+.|++-.+..+ .-...|+.|+.|.|+|.|+.
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE-VASEYLRKGSQVYIEGQLRT 85 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHH-HHHHhcCCCCEEEEEEEEEe
Confidence 4788888877 343 34444544442 1 133477877654322 12235999999999999975
No 206
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=26.00 E-value=40 Score=36.58 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHF-ADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL-~~~gF~EVeTp 658 (658)
.-.+++.+|.+.+|+.+ .+.||.||.||
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP 90 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTP 90 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCC
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 45788999999999999 99999999999
No 207
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=25.71 E-value=1.4e+02 Score=26.42 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 100 FIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 100 ~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.+.|++-.+..+ .-...|+.|+.|.|+|.|+.
T Consensus 50 ~~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~L~~ 81 (134)
T 2vw9_A 50 FIDARLFGRTAE-IANQYLSKGSSVLIEGRLTY 81 (134)
T ss_dssp EEEEEEEHHHHH-HHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEcHHHH-HHHHhCCCCCEEEEEEEEEe
Confidence 467766544221 11235999999999999975
No 208
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=25.21 E-value=25 Score=37.32 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.6
Q ss_pred CccceecchhHHHHHHh
Q psy8087 417 PHGGYGLGLERVLCWLL 433 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~ 433 (658)
|.-|||+|+|||+..+-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 45699999999999874
No 209
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.19 E-value=43 Score=36.32 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=28.1
Q ss_pred ceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 620 RHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 620 R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+..++.- .-.+++.+|.+.+++.+.+.||.||.||
T Consensus 184 G~~~~~p----~ga~l~~aL~~~~~~~~~~~Gy~ev~tP 218 (455)
T 2dq0_A 184 RFYYLLN----EIVILDLALIRFALDRLIEKGFTPVIPP 218 (455)
T ss_dssp TCCEEEH----HHHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEECC----HHHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 4444444 3356788999999999999999999998
No 210
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=24.90 E-value=40 Score=36.57 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++..|.+.+|+.|...||.||.||
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP 74 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETP 74 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECC
Confidence 3467889999999999999999999999
No 211
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=24.88 E-value=2.1e+02 Score=26.47 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=37.9
Q ss_pred cEEEEeEEeec---ceec--CCCeEEEEE-Ec-------------CCeEEEEEEecc-cchhhhhhcCCCccEEEEEEEe
Q psy8087 71 TNINIPAIPGP---PAIP--GKGLMFVTL-RD-------------GSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRI 130 (658)
Q Consensus 71 ~~v~~~Grv~~---~r~~--gk~l~Fi~L-rD-------------~~~~iQvv~~~~-~~~~~~~~~l~~es~V~v~G~l 130 (658)
-.|+|.|||.+ +|.. |+.++-+.| .+ .+..+.|++-.+ ..+ .....|+.|+.|.|+|.|
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe-~~~~~l~KG~~V~VeGrL 102 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK-IALQYLHKGSKVYIEGKL 102 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH-HHHHHCCTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH-HHHHhCCCCCEEEEEEEE
Confidence 35899999987 5543 444443333 11 122377777654 222 122369999999999999
Q ss_pred EeC
Q psy8087 131 EKV 133 (658)
Q Consensus 131 ~~~ 133 (658)
+..
T Consensus 103 ~~r 105 (169)
T 3lgj_A 103 QTR 105 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 212
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=23.79 E-value=2.1e+02 Score=24.64 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=35.7
Q ss_pred EEEEeEEeec---cee--cCCCeEEEEEE------c--------CCeEEEEEEec-ccchhhhhhcCCCccEEEEEEEeE
Q psy8087 72 NINIPAIPGP---PAI--PGKGLMFVTLR------D--------GSGFIQCVLAD-ILCQTEHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 72 ~v~~~Grv~~---~r~--~gk~l~Fi~Lr------D--------~~~~iQvv~~~-~~~~~~~~~~l~~es~V~v~G~l~ 131 (658)
.|+|.|||.+ +|. .|+.++-+.|. | .+..+.|++-. +..+ .-...++.|+.|.|+|.|+
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae-~~~~~l~KG~~V~V~G~L~ 86 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD-LIDKYLRKGRRVYVQGSLH 86 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH-HHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH-HHHhhcCCCCEEEEEEEEE
Confidence 5788888876 443 34444433331 1 12237777665 3322 1223699999999999997
Q ss_pred e
Q psy8087 132 K 132 (658)
Q Consensus 132 ~ 132 (658)
.
T Consensus 87 ~ 87 (124)
T 3ulp_A 87 T 87 (124)
T ss_dssp E
T ss_pred e
Confidence 4
No 213
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=23.15 E-value=3.1e+02 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred EEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC----CCc----cceEecCCCceeEEeec
Q psy8087 100 FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP----EEN----MKVQLIHPSSYAIVWLG 154 (658)
Q Consensus 100 ~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p----~~~----~d~~l~~p~~R~l~lr~ 154 (658)
.+.|++-.+..+. -...|+.|+.|.|+|.|+... ++. +++.+++ -..||+.
T Consensus 54 wi~VvawgklAE~-v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~---Ig~dL~~ 112 (199)
T 3eiv_A 54 FLTCSVWRQAAEN-VAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDE---VGASLRS 112 (199)
T ss_dssp EEEEEEETHHHHH-HHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEE---EEEECSS
T ss_pred EEEEEEEhHHHHH-HHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEE---Eeccccc
Confidence 4677765543221 123699999999999998543 222 5666654 3455553
No 214
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=22.94 E-value=3.5e+02 Score=22.96 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=46.4
Q ss_pred cEEEEEEEEEe---eecC--C-CceEEEEEE-------eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-
Q psy8087 513 KRVTIFGWVHR---LRRQ--G-KGLMFVTLR-------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG- 578 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~~--G-kkl~Fi~Lr-------d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~- 578 (658)
..|.+-|+|.+ +|-. | +.++=+.|- +.+..+.|++-..... ...+.|+.||-|.|+|.+....=.
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE-~~~~yl~KG~~V~VeGrL~~r~y~~ 90 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQ-ELQDRCRLNDEVVLEGRLRINSLLK 90 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEEEC---
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHH-HHHHhCCCCCEEEEEEEEEeeeEEC
Confidence 35788888875 3532 3 234433332 1334578887654321 223459999999999999875421
Q ss_pred C--CCCCceEEEEEEEE
Q psy8087 579 K--SAPGGHELKVDYWE 593 (658)
Q Consensus 579 ~--~~~g~~El~~~~i~ 593 (658)
+ .+....||.|+++.
T Consensus 91 kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 91 PDGNREKQTELTVTRVH 107 (108)
T ss_dssp -----CCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEEE
Confidence 1 11234788888764
No 215
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=22.81 E-value=53 Score=36.04 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhh--cCCcEEecCC
Q psy8087 632 VLLMRSVLLQALRAHFA--DRNYTEVNIE 658 (658)
Q Consensus 632 ifr~Rs~i~~~iR~fL~--~~gF~EVeTp 658 (658)
-.+++..|.+.+|+.+. +.||.||.||
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP 66 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDAS 66 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEcc
Confidence 35688899999999999 8999999998
No 216
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=21.93 E-value=3.5e+02 Score=23.01 Aligned_cols=66 Identities=12% Similarity=-0.079 Sum_probs=34.5
Q ss_pred CCcEEEEeEEeecceec---CCC-eEEEEEEcCCeE-----EEEEEecccch-hhhhhcCCCccEEEEEEEeEeCC
Q psy8087 69 IITNINIPAIPGPPAIP---GKG-LMFVTLRDGSGF-----IQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~---gk~-l~Fi~LrD~~~~-----iQvv~~~~~~~-~~~~~~l~~es~V~v~G~l~~~p 134 (658)
+|.+.++-|+|+.+-.- ..+ .-|....|+.+. +=|.+-.+... ..-...++.|+.|.|+|+|+-.|
T Consensus 2 ~~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 2 AGSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp --CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred CccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 35678999999997651 112 345555555431 11111111110 00113689999999999999766
No 217
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=21.51 E-value=52 Score=35.78 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.-.+++..|.+.+|+.+...||.||.||
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP 69 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFP 69 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecC
Confidence 3467889999999999999999999999
No 218
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=20.69 E-value=1.6e+02 Score=25.81 Aligned_cols=51 Identities=24% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--h--HHhccCCCCcEEEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--T--EHALLLSTESSVQFR 569 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~--~~~~~L~~gs~V~V~ 569 (658)
.|+ .+.|.|.++...| +|+.|-++ ++.++..+... . .....++.||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G---~FV~l~~~---~~Glihisel~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG---AFVALDEE---TQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE---EEEEEETT---EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe---EEEEECCC---cEEEEEHHHCCcccccCccccCCCCCEEEEE
Confidence 455 4789999998887 79999553 56666543211 0 122459999999875
No 219
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=20.53 E-value=3.9e+02 Score=22.63 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=36.7
Q ss_pred cEEEEeEEeec---ceec--C-CCeEEEEEE-c------CCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 71 TNINIPAIPGP---PAIP--G-KGLMFVTLR-D------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 71 ~~v~~~Grv~~---~r~~--g-k~l~Fi~Lr-D------~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..|.|.|||.+ +|.. | ..++=+.|- + .+..+.|++-.+..+ .-...++.|+-|.|+|.|+..
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE-~~~~yl~KG~~V~VeGrL~~r 86 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQ-ELQDRCRLNDEVVLEGRLRIN 86 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHH-HHHHHCCTTCEEEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHH-HHHHhCCCCCEEEEEEEEEee
Confidence 35788888876 4443 2 223333332 1 233477777654322 112358999999999999853
No 220
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=20.49 E-value=2.3e+02 Score=26.80 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=36.7
Q ss_pred EEEEeEEeec---ceec--CCCeEEEEEE-c--------C-----CeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 72 NINIPAIPGP---PAIP--GKGLMFVTLR-D--------G-----SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~---~r~~--gk~l~Fi~Lr-D--------~-----~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+|.|||.+ +|.. |+.++-+.|- + + +..+.|++-.+.........|+.|+.|.|+|.|+.
T Consensus 28 kV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~t 107 (193)
T 3pgz_A 28 KVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQT 107 (193)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEEE
Confidence 5899999987 5543 4444433332 1 1 12366766543111111236999999999999975
Q ss_pred C
Q psy8087 133 V 133 (658)
Q Consensus 133 ~ 133 (658)
.
T Consensus 108 r 108 (193)
T 3pgz_A 108 R 108 (193)
T ss_dssp E
T ss_pred E
Confidence 3
No 221
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=20.21 E-value=3.6e+02 Score=22.94 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=34.2
Q ss_pred EEEEeEEeec---cee--cCCCeEEEEEE-----cCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 72 NINIPAIPGP---PAI--PGKGLMFVTLR-----DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 72 ~v~~~Grv~~---~r~--~gk~l~Fi~Lr-----D~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|.|.|||.+ .|- .|.+++=+.|- +....|-|++..+..+. ..+..|+.|.|.|.++.
T Consensus 13 ~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~---~~~~kG~~v~v~G~lrs 80 (107)
T 4gs3_A 13 TVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEG---MNLEVGTRVKIEGQLRS 80 (107)
T ss_dssp CEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTT---CCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhH---HhhcCCCEEEEEEEEEe
Confidence 3788888876 222 23332222221 23345777777654322 24568999999999964
Done!