RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8087
(658 letters)
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 514 bits (1327), Expect = e-179
Identities = 205/398 (51%), Positives = 261/398 (65%), Gaps = 45/398 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL--I 143
GK LMF LRDG+GF+Q +L D LCQT AL ++TE +V+ G I++VPE +
Sbjct: 27 GKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHEL 86
Query: 144 HPSSYAIVWLGDLKQGGYPP--------------------------------EVSLA--- 168
+ I+ G+ GG + A
Sbjct: 87 IADFWKII--GNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMRE 144
Query: 169 ----NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
G +V PPTLVQTQVEGGSTLF+L++FGE ++LTQSSQLYLETC+P LGDV+CIA
Sbjct: 145 HFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIA 204
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH--GDLVRQM 282
QSYRAE SRTRRHLAEY HVEAEC F+T DDL++K+E+L+CDTVDR++A L+ +
Sbjct: 205 QSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHI 264
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIML 342
NP F+PP RPFLRM Y DAI++L++H + + +GEDI E ER MTD IN+PI+L
Sbjct: 265 NPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILL 324
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA 402
RFP++IK+FYM + ++ LTESVD+L P VGE++GGSMRIW +EL +K IDP
Sbjct: 325 NRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK 384
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWY DQR YG+ PHGGYGLGLER +CWL N H+RD
Sbjct: 385 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRD 422
Score = 212 bits (541), Expect = 4e-62
Identities = 84/155 (54%), Positives = 114/155 (73%)
Query: 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS 561
+KI+D K+R++RV I GW+HR+RRQGK LMF LRDG+GF+Q +L D LCQT AL ++
Sbjct: 1 VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVN 60
Query: 562 TESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRH 621
TE +V+ G I++VPEGK AP GHEL D+W+++G AP GG D +LNEEA D LDNRH
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 622 IMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
++IRGEN + +L +R+ +A+R HF + Y EV
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVA 155
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 510 bits (1316), Expect = e-177
Identities = 188/399 (47%), Positives = 247/399 (61%), Gaps = 45/399 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIH 144
K L+FV LRDGSG+ QCV+ LC+ E LL+ E S++ GR+ +N ++
Sbjct: 46 RKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIAD 105
Query: 145 PSSY-----AIVWLGDLKQGGYPP-------------------------------EVSLA 168
+ +G+ E+
Sbjct: 106 ILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWY 165
Query: 169 -------NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
N ++ PPT+V+TQ EGGSTLF L +F EPAYLTQSSQLYLE+ + +LG +
Sbjct: 166 FRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSF 225
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ 281
C+ SYRAE SRT RHLAEY H+EAE F++F+DLL+ LEDL+C +D VMA HGD +R+
Sbjct: 226 CMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRK 285
Query: 282 MNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIM 341
MNP+ + P RPF RM YADAI+Y H I D +E+GEDI E PER+MTD+I PI
Sbjct: 286 MNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDK-PFEYGEDISEKPERQMTDEIGCPIF 344
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
+ FP+ +K+FYMSK P +P LTESVD+L P VGE++GGSMRIW+ +EL+ YK G++P
Sbjct: 345 MIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNP 404
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWYT QRKYGS PHGGYGLG+ER++ WLL + H+R
Sbjct: 405 DPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRK 443
Score = 207 bits (529), Expect = 3e-60
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 488 IVLKEDPSLPPAVRI--KIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQC 545
++ E + P I I+D K VT GW + +R+ K L+FV LRDGSG+ QC
Sbjct: 4 SMMTEATTTPVETPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQC 63
Query: 546 VL-ADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA-----PGGHELKVDYWEVVGLAP 599
V+ LC+ E LL+ E S++ GR+ E++V W+V+G +P
Sbjct: 64 VIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123
Query: 600 AGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ I+N+++ ++ NRHI+IR E+T +VL +RS + R ++ D ++TE+
Sbjct: 124 I-DLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQ 179
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 472 bits (1218), Expect = e-162
Identities = 127/399 (31%), Positives = 196/399 (49%), Gaps = 54/399 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFRGRIEKVPEENMKVQLI 143
+F+ +RD +G +Q V+A + E A L ESSV G ++ + +
Sbjct: 32 GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAE-V 90
Query: 144 HPSSYAIVWLGDLKQGGYPP-------------------------------EVSLA---- 168
H + + + + P + +A
Sbjct: 91 HVEKLEV--IQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREW 148
Query: 169 ---NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
+G +V PP LV VEGG+TLF L +F + AYL+QS+QLYLE + L V+ +
Sbjct: 149 LLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTP 208
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGD---LVRQM 282
S+RAE SRTRRHL E+ H+E E A++ D++ E+L+ V R + + R
Sbjct: 209 SFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD 268
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIML 342
+ PF R++Y +AI+ L+ E+G+D+ ER +T++ +RP +
Sbjct: 269 LTTLKNTEPPFPRISYDEAIDILQSK------GVNVEWGDDLGADEERVLTEEFDRPFFV 322
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPN-VGEVIGGSMRIWDPEELLAGYKREGIDP 401
+P IK+FYM + P +P + D+L P GE+IGGS R D ++LL EG+DP
Sbjct: 323 YGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDP 382
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
Y WY D R+YGS PH G+GLG+ER++ W+L H+R
Sbjct: 383 KDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRW 421
Score = 170 bits (433), Expect = 7e-47
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---H 556
++ ++ + K+V + GWV+ R GK +F+ +RD +G +Q V+A + E
Sbjct: 4 KVYCQEVKPELDGKKVRLAGWVYTNMRVGK-KIFLWIRDSTGIVQAVVAKNVVGEETFEK 62
Query: 557 ALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQ 616
A L ESSV G V + APGG E+ V+ EV+ E+A P++
Sbjct: 63 AKKLGRESSVIVEG---IVKADERAPGGAEVHVEKLEVIQAVSEFPIP-ENPEQASPELL 118
Query: 617 LDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
LD RH+ IR S ++ ++ L+ A R + EV
Sbjct: 119 LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVF 158
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 450 bits (1159), Expect = e-154
Identities = 98/396 (24%), Positives = 173/396 (43%), Gaps = 53/396 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
G F+ LRD +G Q V+ + L+ ES +Q RG ++ ++ +H
Sbjct: 32 GGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIE-LHAE 90
Query: 147 SYAIVWLGDLKQGGYPPEVSLA-------------------------------------- 168
++ P +VS
Sbjct: 91 EITLLSKAK---APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRET 147
Query: 169 ---NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
G ++ P ++ + EGG+ LF + +FG+ A+L QS QLY E + V+ +A
Sbjct: 148 LYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAP 207
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
++RAE S T HLAE+ ++ E AF ++D++ LE ++ + V + + ++ +N
Sbjct: 208 AWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYE 267
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI-MLCR 344
P R+ Y +AIE LR +FG+DI R + +++ + +
Sbjct: 268 PPEVKIPIKRLKYTEAIEILRSK------GYNIKFGDDIGTPELRILNEELKEDLYFIVD 321
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
+P+D + FY ENP L+ES D+++ E++ GS R E L K++G+ P +
Sbjct: 322 WPSDARPFYTKSKSENPELSESFDLIYKF-LEIVSGSTRNHKREVLEEALKKKGLKPESF 380
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++ YG PH G+G+GL R++ L V++
Sbjct: 381 EFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKE 416
Score = 168 bits (428), Expect = 3e-46
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
I D +Y K V GWVH LR G F+ LRD +G Q V+ +
Sbjct: 4 SHFIADVTPEYDGKEVIWAGWVHLLRDLGG-KKFIILRDKTGLGQVVVDKNSSAFGISQE 62
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG-GADAILNEEALPDVQLD 618
L+ ES +Q RG V K AP G EL + ++ A A D +A D +L
Sbjct: 63 LTQESVIQVRG---IVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLR 119
Query: 619 NRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
R + +R + V+ ++S+ L+A R + E+
Sbjct: 120 ERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIF 157
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 425 bits (1095), Expect = e-144
Identities = 101/402 (25%), Positives = 168/402 (41%), Gaps = 69/402 (17%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
+ F+ LRD SG +Q V L ES+++ RG + + + ++ +
Sbjct: 29 GRIQFLLLRDRSGVVQVVTGG-------LKLPLPESALRVRGLVVENAKAPGGLE-VQAK 80
Query: 147 SYAIVWLGDLKQGGYPPEVSLA-------------------------------------- 168
++ P E+
Sbjct: 81 EVEVLSPAL---EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRR 137
Query: 169 ----NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
++ P +V+ EGGS LF +++F + AYL QS QLY + + VY +A
Sbjct: 138 YLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVA 197
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283
+R E T RHL EY ++ E F+ +DL+ E L+ + ++ + T GD +R +
Sbjct: 198 PVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLG 257
Query: 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP---- 339
+ + R+ +A+A L++ Y G+D+ E ER + +
Sbjct: 258 ATWPSFPQDIPRLTHAEAKRILKEE-------LGYPVGQDLSEEAERLLGEYAKERWGSD 310
Query: 340 -IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
+ + R+P ++ FY PE T S D+LF + E+ G RI EELL K +G
Sbjct: 311 WLFVTRYPRSVRPFYT--YPEEDGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKG 367
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+DP ++ Y + KYG PHGG+ +G ER+ LL +VR
Sbjct: 368 MDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRY 409
Score = 170 bits (432), Expect = 7e-47
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 500 VRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
+R+ ++D + + + V + G++H R G+ + F+ LRD SG +Q V L
Sbjct: 1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQVVTGG-------LKL 52
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNE--EALPDVQL 617
ES+++ RG V E APGG E++ EV+ A I E A PD L
Sbjct: 53 PLPESALRVRG---LVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLL 109
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ R++ +RGE L +++ L++ R + +++TE+
Sbjct: 110 EYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIF 148
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 393 bits (1011), Expect = e-131
Identities = 111/430 (25%), Positives = 165/430 (38%), Gaps = 82/430 (19%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQT------EHALLLSTESSVQFRGRIEKVPEENMK 139
G L F+TLR + IQ ++ T + A L+ ES V RG ++KV E
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
Query: 140 VQL----IHPSSYAIVWLG------DLKQGGYPPEVSLANGIAKVTPPT----------- 178
+ IH + + L+ + A G+ V T
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRT 171
Query: 179 ---------------------------------LVQTQVEGGSTLFSLNFFGEPAYLTQS 205
L+ EGGS++F + +F AYL QS
Sbjct: 172 VTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQS 231
Query: 206 SQLYLETCLPA-LGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDL 263
Q + + A VY I +RAENS T RH+ E+T ++ E AF + ++LD L +L
Sbjct: 232 PQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291
Query: 264 ICDTVDRVMATHGD---LVRQMNPNFE---PPARPFLRMNYADAIEYLRKHEIRKPDNTE 317
+ LVR+ P E P +R+ Y + IE LR E
Sbjct: 292 FVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAA------GKE 345
Query: 318 YEFGEDIPEMPERKMTDQINRP-----IMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372
ED+ E+ + + +L +FP +I+ FY P NP + S D
Sbjct: 346 IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMR 405
Query: 373 NVGEVIGGSMRIWDPEELLAGYKREGIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLC 430
E++ G+ RI D L K G+ P Y D YG PH G G+GLERV+
Sbjct: 406 G-EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464
Query: 431 WLLNQYHVRD 440
+ L+ ++R
Sbjct: 465 FYLDLKNIRR 474
Score = 167 bits (425), Expect = 2e-45
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 23/193 (11%)
Query: 487 KIVLKEDPSLPPAVRIKIKD--GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQ 544
++ D R+K D K DK V VH R+QG L F+TLR + IQ
Sbjct: 9 PLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQ 68
Query: 545 CVLADILCQT------EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
++ T + A L+ ES V RG ++KV E + L++ ++ ++
Sbjct: 69 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 128
Query: 599 PAGGADAILNEEA---------------LPDVQLDNRHIMIRGENTSRVLLMRSVLLQAL 643
A IL E+A D +LD R I +R + +++ + +
Sbjct: 129 ETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELF 188
Query: 644 RAHFADRNYTEVN 656
R + A + +TEV+
Sbjct: 189 REYLATKKFTEVH 201
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 388 bits (998), Expect = e-128
Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 17/283 (6%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQS 226
+ ++ P L+ EGGS +F + +F AYL QS QLY + + V+ +
Sbjct: 260 SQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPV 319
Query: 227 YRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGD---LVRQM 282
+RAENS TRRHL E+ ++ E + + + +D +E L D + D ++R+
Sbjct: 320 FRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQ 379
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR---- 338
P + RPFLR+ Y +AIE LR +D E K+ + I
Sbjct: 380 YPFEDLIYRPFLRLTYKEAIEMLRAS------GETIGDYDDFTTPQEVKLGELIKAKYNT 433
Query: 339 -PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE 397
+L +FPA I+ FY ++P + S DV E+ G+ RI DPE L+ +
Sbjct: 434 DFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEK 492
Query: 398 GIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
G+DPA Y + ++GS PH G G+GLER+ L ++R
Sbjct: 493 GVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRK 535
Score = 129 bits (327), Expect = 5e-32
Identities = 38/266 (14%), Positives = 74/266 (27%), Gaps = 64/266 (24%)
Query: 454 SKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKD-GEKYRD 512
+AA K + + E + + + +I++ +
Sbjct: 3 GSMAATQEKKPQLPPVVLLKTPELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVPAMAE 62
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQF 568
K VTI V +R +G ++F+ LR G Q ++ ++ +S ES
Sbjct: 63 KTVTIRARVQAVRGKGN-MVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDI 121
Query: 569 RGRIEKVPE--GKSAPGGHELKVDYWEVVGLAP--------------------------- 599
G ++ V + K+ E+ V VV LA
Sbjct: 122 TGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKV 181
Query: 600 -------------------------AGGADAILNEEALPDVQLD----NRHIMIRGENTS 630
A + + V D NR + +R
Sbjct: 182 DEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNI 241
Query: 631 RVLLMRSVLLQALRAHFADRNYTEVN 656
+ ++S R + + E++
Sbjct: 242 AIFRIQSACCGLFREFLTSQKFVEIH 267
Score = 50.2 bits (120), Expect = 1e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQFRGRIEKVPEE 136
++F+ LR G Q ++ ++ +S ES G ++ V +
Sbjct: 78 GNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP 131
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 353 bits (909), Expect = e-116
Identities = 99/402 (24%), Positives = 169/402 (42%), Gaps = 56/402 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFRGRIEKVPEENMKVQLI 143
G+ F+ +RD G +Q E L +E V G + P+ + + I
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFE-I 90
Query: 144 HPSSYAIVWLGDLK---QGGYPPEVSL--------------------------------- 167
P ++ + + L
Sbjct: 91 LPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDF 150
Query: 168 --ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIA 224
NG ++ P ++ T EGG+ LF + +F E A+L QS QLY + + L VY IA
Sbjct: 151 FHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIA 210
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283
+RAE T RHL E +++E AF+ ++++ LE L+ ++ V + + +N
Sbjct: 211 PIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN 270
Query: 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR----- 338
E P PF R++Y A+E L E +GEDI ER + +
Sbjct: 271 FELEEPKLPFPRVSYDKALEILGDL------GKEIPWGEDIDTEGERLLGKYMMENENAP 324
Query: 339 PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
L ++P++ K FY+ K P + + D+ + E+ G R + L+ K +G
Sbjct: 325 LYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKG 383
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++P + +Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 384 LNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 425
Score = 128 bits (324), Expect = 5e-32
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---H 556
+ E+ ++V + GWV ++ G + F+ +RD G +Q E
Sbjct: 4 THYSSEITEELNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKL 62
Query: 557 ALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG-GADAILNEEALPDV 615
L +E V G + P+ A G E+ + V+ A D +A D
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPK---AKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDT 119
Query: 616 QLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+LDNR + +R + +RS + +A+R F + + E++
Sbjct: 120 RLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIH 160
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 254 bits (650), Expect = 1e-79
Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 40/261 (15%)
Query: 185 EGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN--SRTRRHLAEY 241
G + +G LT S L+ + + L ++ ++ + R E+ RH E+
Sbjct: 55 GEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEF 114
Query: 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADA 301
T ++ E +D++ +E L+ + G P + F Y++
Sbjct: 115 TQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREF--------PKTKRFEVFEYSEV 166
Query: 302 IEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENP 361
+E EFG D E + P + P + FY E
Sbjct: 167 LE---------------EFGSDEKASQEME------EPFWIINIP---REFYD---REVD 199
Query: 362 ALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHG 419
+ D++ P GEV G R W+ E+++A ++ G++ + Y + K G P
Sbjct: 200 GFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSA 259
Query: 420 GYGLGLERVLCWLLNQYHVRD 440
G G+G+ER++ +++ H+ +
Sbjct: 260 GAGIGVERLVRFIVGAKHIAE 280
Score = 33.7 bits (78), Expect = 0.15
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 620 RHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ I S L +++ +L+ + F + +
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLL 38
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 74.7 bits (183), Expect = 2e-16
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 439 RDKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEK---REKNLEEAKKIVLKEDPS 495
+ ++ +K LKK K ++ K+E A K E + LEEAKK+ ++ D S
Sbjct: 50 KQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTS 109
Query: 496 L 496
L
Sbjct: 110 L 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 3e-13
Identities = 86/626 (13%), Positives = 179/626 (28%), Gaps = 160/626 (25%)
Query: 69 IITNINIPAIPG-PPAIPGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLS------- 119
I++ I I A+ G +F TL +Q + ++L + + L+S
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQR 103
Query: 120 -----TESSVQFRGRIEKVPEENMK--VQLIHPSSYAIVWLGDLKQGGYPPEVSLANG-- 170
T ++ R R+ + K V + P L +L+ V + +G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLI-DGVL 159
Query: 171 -------IAKVTPPTLVQTQVEGGSTLFSLNFFGE----PAYLTQSSQLY--LETCLPAL 217
V VQ +++ +F LN L +L ++ +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFK--IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 218 GDVYC-IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK--LE--DLICDTV---- 268
D I + + RR L + L ++ + +L C +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 269 DRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMP 328
+ + + + + + + L K+ ++P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKY-----------LDCRPQDLP 319
Query: 329 ERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESV-DVLFPNVGEVIGGSMRIWDP 387
N P L I+ + A ++ V + +I S+ + +P
Sbjct: 320 RE--VLTTN-PRRLSIIAESIR--------DGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 388 EELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVLC--WLLNQYHVRDK 441
E + R + P P +L W ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIP----------------------TILLSLIW---FDVIKSD 403
Query: 442 YQLIAKAQLKKVSKLAARDNAKSE--------SKAKKEEEDAEKREKNLE--EAKKIVLK 491
++ +L K S L + +S K E + ++ K
Sbjct: 404 VMVVVN-KLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 492 EDPSLPPAVRIKIKDGEKY-------------RDKRVTIF-------GWVHR-LRRQGKG 530
+D P D Y +R+T+F ++ + +R
Sbjct: 462 DDLIPPYL------DQ--YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-- 511
Query: 531 LMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590
T + SG I L + + ++ ++ + + + + +
Sbjct: 512 ----TAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 591 YWEVVGLAPAGGADAILNEEALPDVQ 616
Y +++ +A +AI EEA VQ
Sbjct: 564 YTDLLRIALMAEDEAIF-EEAHKQVQ 588
Score = 41.8 bits (97), Expect = 8e-04
Identities = 36/255 (14%), Positives = 75/255 (29%), Gaps = 75/255 (29%)
Query: 433 LNQYHVRDK-YQLIAKAQLKKVSKLAARDNA----------KSESKAKKEEEDAEKREKN 481
+ V+D +++K ++ + + K E +K E+ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 482 -LEEAKKIVLKEDPSLPPAVRIKIK-----DGEKYRDKRVTIFGWVHRLR------RQGK 529
L K + PS+ + I+ + D + + V+ +LR R K
Sbjct: 93 FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 530 GL----MFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585
+ + GSG + +A +C + +++ + K
Sbjct: 152 NVLIDGVL-----GSG--KTWVALDVCLSY---------------KVQCKMDFK------ 183
Query: 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLL----- 640
+ +W + L + +L L I TSR ++ L
Sbjct: 184 ---I-FW--LNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 641 -QALRAHFADRNYTE 654
LR + Y
Sbjct: 231 QAELRRLLKSKPYEN 245
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 62.9 bits (154), Expect = 2e-10
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQ 567
E + + V + GWV+R R G GL+F+ LRD G +Q V A + E V+
Sbjct: 12 ETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVR 70
Query: 568 FRGRIEKVPEG--KSAPGGHELKVDYWEVVGLAPA--------GGADAILNEEALPDVQL 617
+G + PE + A G E+++ EV LA A G +EA +++L
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEV--LAEAKTPPFPVDAGWRGEEEKEASEELRL 128
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R++ +R L +R +++A+ + +V
Sbjct: 129 KYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQV 166
Score = 36.3 bits (85), Expect = 0.031
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVR 280
+ IA+ +R E+ R R ++T ++ E +F+ +D+L+ E L+ +
Sbjct: 216 FQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREAL-------- 266
Query: 281 QMNPNFEPPARPFLRMNYADAIE 303
E P PF R++Y +A+E
Sbjct: 267 ----GVELP-LPFPRLSYEEAME 284
Score = 34.8 bits (81), Expect = 0.084
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 28/81 (34%)
Query: 376 EVIGGSMRIWDPE------ELLAGYKREGIDPAPYYWYTDQR----------KYGSTPHG 419
EV GGS+RI DP LL GI +QR +YG+ PHG
Sbjct: 476 EVGGGSIRIHDPRLQARVFRLL------GIGEE------EQREKFGFFLEALEYGAPPHG 523
Query: 420 GYGLGLERVLCWLLNQYHVRD 440
G GL+R+L + +R+
Sbjct: 524 GIAWGLDRLLALMTGSPSIRE 544
Score = 34.4 bits (80), Expect = 0.14
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 88 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK 139
GL+F+ LRD G +Q V A + E V+ +G + PE N +
Sbjct: 33 GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPR 84
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 61.7 bits (151), Expect = 4e-10
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 34/166 (20%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL----ADILCQTEHALLLSTE 563
+ ++VT+ GWV+R R G L+F+ +RD G +Q AD L + A L E
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADAL---KLASELRNE 66
Query: 564 SSVQFRGRIEKVPEGKSAP----GGHELKVDYWEVVGLAPAGGADAILNE-EALP----- 613
+Q G + E G E+ I+N + LP
Sbjct: 67 FCIQVTGTVRARDEKNINRDMATGEIEVLASSLT------------IINRADVLPLDSNH 114
Query: 614 ----DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ +L R++ +R ++ L R+ + +R D + ++
Sbjct: 115 VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI 160
Score = 35.5 bits (83), Expect = 0.052
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVR 280
Y I + +R E+ R R E+T ++ E +F+T + + +E L+ V
Sbjct: 210 YQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK-------- 260
Query: 281 QMNPNFEPPARPFLRMNYADAIE 303
+ F M +A+A
Sbjct: 261 ----GVDLG--DFPVMTFAEAER 277
Score = 35.2 bits (82), Expect = 0.071
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 28/81 (34%)
Query: 376 EVIGGSMRIWDPE------ELLAGYKREGIDPAPYYWYTDQR----------KYGSTPHG 419
EV GGS+RI + + +L GI+ +QR KYG+ PH
Sbjct: 482 EVGGGSVRIHNGDMQQTVFGIL------GINEE------EQREKFGFLLDALKYGTPPHA 529
Query: 420 GYGLGLERVLCWLLNQYHVRD 440
G GL+R+ L ++RD
Sbjct: 530 GLAFGLDRLTMLLTGTDNIRD 550
Score = 30.1 bits (69), Expect = 2.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 88 GLMFVTLRDGSGFIQCVL----ADILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
L+F+ +RD G +Q AD L + A L E +Q G + E+N
Sbjct: 32 SLIFIDMRDREGIVQVFFDPDRADAL---KLASELRNEFCIQVTGTVRARDEKN 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 76/456 (16%), Positives = 133/456 (29%), Gaps = 171/456 (37%)
Query: 4 QKTVEICPKAVKIPPRGCQFAQ---SPYGVYPPTSF-STAGGGGSLLP--FPLFPSPCEV 57
+ + A K+ +G + +P P + + P PL +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYLLSI-------PISCPL------I 241
Query: 58 GYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 117
G I A Y++T + PG + L+ +G Q ++ A+
Sbjct: 242 GVIQL---AHYVVTAKLLGFTPGE--------LRSYLKGATGHSQGLVT--------AVA 282
Query: 118 LSTESSVQ-FRGRIEKVPEENMKVQLIHPSSYAIVWLGDLKQGGYPPEVSLANGIAKVTP 176
++ S + F + K + ++G YP SL P
Sbjct: 283 IAETDSWESFFVSVRKAIT-------------VLFFIGVRCYEAYPN-TSL--------P 320
Query: 177 PTLVQTQVEGGSTLFSLNFFGEPAY------LTQSS-QLYLETC---LPALGDVYCIAQS 226
P++++ +E G P+ LTQ Q Y+ LPA V I+
Sbjct: 321 PSILEDSLENN--------EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLV 371
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDL--ICDTVDRVMATHG-DLVR--- 280
N ++ + L + T+ + A G D R
Sbjct: 372 ----NGAKNLVVSGPP------------------QSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 281 -QMNPNFE----PPARPF----LRMNYADAIEYLRKH------EIRKPD------NTEYE 319
+ F P A PF L A + + K D +T
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLL----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFD- 464
Query: 320 FGEDIPEMPERKMTDQINRPI--MLCRFPADIKSFYMSKCPENPALTESVDVLF-PN--- 373
G D+ R ++ I+ I + R P + A T +D F P
Sbjct: 465 -GSDL-----RVLSGSISERIVDCIIRLPVK-----WETTTQFKA-THILD--FGPGGAS 510
Query: 374 --------------VGEVIGGSMRIWDPEELLAGYK 395
V ++ G++ I ++ G+K
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPDDDY--GFK 544
Score = 51.6 bits (123), Expect = 7e-07
Identities = 72/471 (15%), Positives = 131/471 (27%), Gaps = 150/471 (31%)
Query: 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDL------LDKLEDLICDTVDRVMATHG 276
++ + E E +L +D+ L + D ++ +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 277 DLVRQMNPNFEPPARPFL---------RMNYA------DAIEYLRKHEIRKPDNTEYEFG 321
F+ + L ++ A + +Y E+R T +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFE--ELRDLYQTYHVLV 184
Query: 322 EDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCP-----ENPALTESVDVL------ 370
D+ + + ++ L R D + + ENP+ T D L
Sbjct: 185 GDLIK----FSAETLSE---LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 371 FPNVGEVIGGSMRIWDPEEL--LAGY----KREGIDPAPYYWYTDQRKYGSTPHGGYGL- 423
P +IG + LA Y K G P G+T H GL
Sbjct: 238 CP----LIG----------VIQLAHYVVTAKLLGFTPGELR----SYLKGATGHSQ-GLV 278
Query: 424 ---GLERVLCWLLNQYHVRDKYQLIAKAQLKKV------SKLAARDNAKSESKAKKEEED 474
+ W + + KA + + A + + S + E+
Sbjct: 279 TAVAIAETDSW-------ESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 475 AEK--------REKNLEEAKKIVLKEDPSLPPAVRIKI--KDGEKYRDKRV------TIF 518
E E+ + V K + LP +++I +G V +++
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVVSGPPQSLY 387
Query: 519 GWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG 578
G LR+ + SG Q S + F R K+
Sbjct: 388 GLNLTLRK---------AKAPSGLDQ-------------------SRIPFSER--KLKFS 417
Query: 579 K-----SAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMI 624
++P H L PA +D I + +V + + I I
Sbjct: 418 NRFLPVASP-FHS---HL-----LVPA--SDLINKDLVKNNVSFNAKDIQI 457
Score = 48.5 bits (115), Expect = 8e-06
Identities = 45/230 (19%), Positives = 69/230 (30%), Gaps = 68/230 (29%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKIKDGEKYRDKRVTI-FGWV--HRLRRQGKGLMFVTL 536
K + A+ + + D I D +TI FG R+R ++F T+
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 537 RDGSGFIQCVLADI---------------LCQTEH---ALLLSTESSVQFRGRIEK---V 575
DG + + +I L T+ AL L F ++ +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM--EKAAFE-DLKSKGLI 1753
Query: 576 PEGKS-APGGHELKVDYWEVVG----LAPAGGA----DAI--------LNEEALP-DVQL 617
P + A GH L G LA + + A+P D
Sbjct: 1754 PADATFA--GHSL--------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 618 DNRHIMIRGENTSRV-LLMRSVLLQALRAHFADR--------NYTEVNIE 658
+ + MI N RV LQ + R NY N+E
Sbjct: 1804 RSNYGMI-AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---NVE 1849
Score = 47.7 bits (113), Expect = 1e-05
Identities = 91/570 (15%), Positives = 155/570 (27%), Gaps = 208/570 (36%)
Query: 89 LMFVTLR----DGSGFIQCVLA-------DILCQTE-HALLLSTESSVQ----------- 125
L +V+ F Q + L + HAL
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 126 --FRGR-IEKVPEENMKVQLIHPSS------------YAI--------VWLGDLKQ--GG 160
R + K P + S+ AI + +L+
Sbjct: 125 NYITARIMAKRPFDKK-----SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 161 YPPEVS-LANGIAKVTPPTLVQTQVEGGSTLFS--LNFFG---EPAYLTQSSQLYLETC- 213
Y V L A+ L++T ++ +F+ LN P+ + YL +
Sbjct: 180 YHVLVGDLIKFSAETLSE-LIRTTLDA-EKVFTQGLNILEWLENPS--NTPDKDYLLSIP 235
Query: 214 --LPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRV 271
P +G + Q LA Y V A+ T +L L+ + V
Sbjct: 236 ISCPLIG----VIQ------------LAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 272 MATHGDLVRQMNPNFEPPARPFLRMNYADAIEYL-----RKHEIR-----KPDNTEY--E 319
A + ++E F + AI L R +E P E E
Sbjct: 279 TA----VAIAETDSWES----FFV-SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 320 FGEDIPE-M-----PER----KMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDV 369
E +P M + ++ N PA K +S L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNS-----HLPAG-KQVEIS-------LVNGAK- 375
Query: 370 LFPNVGEVIGGSMRIWDPEEL------LAGYKRE-GIDPA--PYYWYTDQRK------YG 414
N+ V+ G P+ L L K G+D + P+ +RK +
Sbjct: 376 ---NL--VVSGP-----PQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFL 421
Query: 415 --STPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKLAARDNAKSESKAKKEE 472
++P +H L S L +D K+ ++
Sbjct: 422 PVASP------------------FH--SHL-------LVPASDLINKDLVKNNVSFNAKD 454
Query: 473 --------EDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDGEKYRDKRVT---IFGWV 521
D +L + + + E + T FG
Sbjct: 455 IQIPVYDTFDG----SDLRVLSGSIS---ERIVDCIIRLPVKWETTTQFKATHILDFG-- 505
Query: 522 HRLRRQGKGLMFVTLRDGSGFIQCVLADIL 551
G G++ +DG+G ++ ++A L
Sbjct: 506 -PGGASGLGVLTHRNKDGTG-VRVIVAGTL 533
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 46.0 bits (110), Expect = 2e-05
Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 60/300 (20%)
Query: 177 PTLVQTQVEGGSTL--------FSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
P + Q V L + G +L S + +++ L A G V+ + +S+
Sbjct: 61 PCMSQATV-TDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSF 119
Query: 228 RAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA---THGDLVRQMNP 284
R E R H E+T +E L+++++DL+ +D A ++ +
Sbjct: 120 RNE-EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRY-L 177
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN--RPIML 342
+P L + E K ++ +TE + + + + I +P +
Sbjct: 178 EIDP-----LSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFV 232
Query: 343 CRFPADIKSFYMS----KCPENPALTESVDVLFPNVGEVIGGSMRIW-------DPEELL 391
FPA + E+ + E F EV + + D E
Sbjct: 233 YHFPASQ-----ASLAQISTEDHRVAER----F----EVYYKGIELANGFHELTDAREQQ 279
Query: 392 A------GYKREGIDPAPYYWYTDQR-----KYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ P DQ K G G LG++R++ L + +
Sbjct: 280 QRFEQDNRKRAARGLPQHPI---DQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAE 336
Score = 30.2 bits (69), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 630 SR-VLLMRSVLLQALRAHFADRNYTEV 655
S LL R+ ++ +R FADR EV
Sbjct: 32 SIPNLLKRAAIMAEIRRFFADRGVLEV 58
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 40.6 bits (96), Expect = 0.001
Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 38/171 (22%)
Query: 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQC-VLADILCQTEHALLLST 562
++ G+ D + + G +H R G L+F LR +Q + E + ++
Sbjct: 47 LQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINN 106
Query: 563 ESS----VQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDV--- 615
+ + +G GK+ G EL + +E+ L+P L+ LP +
Sbjct: 107 KLRRGDIIGVQGNP-----GKTKKG--ELSIIPYEITLLSPC------LH--MLPHLHFG 151
Query: 616 ---------Q--LDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
Q LD +I + + ++RS ++ +R+ + + E+
Sbjct: 152 LKDKETRYRQRYLD----LILNDFVRQKFIIRSKIITYIRSFLDELGFLEI 198
Score = 33.7 bits (78), Expect = 0.19
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 235 RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPP----- 289
H E+T E A+ + DL++ E ++ V + G +P+
Sbjct: 261 LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHI---TGSYKVTYHPDGPEGQAYDV 317
Query: 290 --ARPFLRMNYADAIEYLRKHEIRKPDNTEYE 319
PF R+N + +E ++ + + E E
Sbjct: 318 DFTPPFRRINMVEELEKALGMKLPETNLFETE 349
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.007
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 447 KAQLKKVSKLAARDNAKSESKAKKEEED-AEKREKNLEEAKKIVLKED 493
+ +L+++ + + KAKK+ E+ +++ + +E+ K D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Score = 35.1 bits (80), Expect = 0.036
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 445 IAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEE 484
I K + ++ +L D + E+E EK +K+LEE
Sbjct: 87 IRKWREEQRKRLQELD----AASKVMEQEWREKAKKDLEE 122
Score = 34.0 bits (77), Expect = 0.098
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 13/45 (28%)
Query: 456 LAARDNAKSESKA-------------KKEEEDAEKREKNLEEAKK 487
+A D E ++ + + ++ E+AKK
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 27.8 bits (61), Expect = 7.7
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 439 RDKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKRE-KNLEE 484
+ + KA+ K + + R + + E K K A+K + +
Sbjct: 107 VMEQEWREKAK-KDLEEWNQRQSEQVE-KNKINNRIADKAFYQQPDA 151
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 37.9 bits (89), Expect = 0.011
Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 34/171 (19%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279
V+ I +++R E R H E+T +E A+ + L+D E LI + T
Sbjct: 275 VFEINRNFRNEGVSPR-HNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 280 RQMNPNFEPPARPFLRMNYADAI-------------------EYLRKH--EIRKPDNTEY 318
+ + PF R+ AI L++ ++ +P
Sbjct: 334 QGRELDLAQ---PFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNA 390
Query: 319 EFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMS----KCPENPALTE 365
G + E Q+ P + +P ++ S + +TE
Sbjct: 391 GIGALQLALFEETAEAQLWEPTFIIDYPIEV-----SPLARESDTVAGITE 436
Score = 33.3 bits (77), Expect = 0.27
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 505 KDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLA-DILCQTEHALL 559
K+ + + V I G + R GK F T++DGSG IQ + + +
Sbjct: 79 KEALEAKSLEVAIAGRMMLKRVMGK-ASFATVQDGSGQIQFFVTPADVGAETYDAF 133
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 36.0 bits (84), Expect = 0.040
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 34/169 (20%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279
V+ I +++R E R H E+T +E A+ + DL++ E L V+ T
Sbjct: 254 VFEINRNFRNEGISVR-HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 280 RQMNPNFEPPARPFLRMNYADAI-------------------EYLRKHEIRKPDNTEYEF 320
+ +F PF ++ +AI I + +
Sbjct: 313 GEHVFDFGK---PFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKS--WGL 367
Query: 321 GEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMS----KCPENPALTE 365
G + E+ + + +P + +PA++ S + NP +T+
Sbjct: 368 GRIVTEIFDEVAEAHLIQPTFITEYPAEV-----SPLARRNDVNPEITD 411
Score = 33.6 bits (78), Expect = 0.20
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 505 KDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLA-DILCQTEHALL 559
+ + V++ G + R GK FVTL+D G IQ +A D L + +
Sbjct: 57 NQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQ 111
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 35.6 bits (83), Expect = 0.046
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279
VY I + +R E TR H E+T +E A+ F D++ E+LI V+ T
Sbjct: 245 VYEIGRVFRNEGISTR-HNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 280 RQMNPNFEPPARPFLRMNYADAI------------------EYLRKHEIRKPDNTEYEFG 321
+ + P + R++ DAI E ++H + + FG
Sbjct: 304 GEHLVDLTP---EWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPH--MTFG 358
Query: 322 EDIPEMPERKMTDQINRPIMLCRFPADIKSFYMS----KCPENPALTE 365
+ E E+K+ D++ +P + P +I S K P++P T+
Sbjct: 359 HIVNEFFEQKVEDKLIQPTFIYGHPVEI-----SPLAKKNPDDPRFTD 401
Score = 34.0 bits (79), Expect = 0.16
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 505 KDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLA-DILCQTEHALL 559
K+ + + V + G + R GK F ++D +G IQ + D + + ++ L
Sbjct: 49 KEELEEQQIEVAVAGRIMTKRGMGK-AGFAHIQDVTGQIQIYVRQDDVGEQQYELF 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.053
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 476 EKRE-KNLEEAKKIVLKEDPSLPPAVRIK 503
EK+ K L+ + K+ PA+ IK
Sbjct: 18 EKQALKKLQASLKLY---ADDSAPALAIK 43
Score = 31.8 bits (71), Expect = 0.29
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 447 KAQLKKVS---KLAARDNAKSES-KAKKE 471
K LKK+ KL A D+A + + KA E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 32.3 bits (73), Expect = 0.22
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 446 AKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIK 505
K K + AAR+ A E K + ++ EK+ K E AK
Sbjct: 95 KKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKS---------QKTQSKGGA 145
Query: 506 DGEKYRDKRV 515
+ ++
Sbjct: 146 TQRGAKGPKI 155
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA; 3.00A
{Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 33.4 bits (77), Expect = 0.33
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 498 PAVRIKIKDGEKYRDKRVTIFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVL-ADILC 552
+ E +V + G V + R G + TL D +G ++ V+
Sbjct: 1028 TIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE 1087
Query: 553 QTEHALLLSTESSVQFRGRIEK 574
L + + +EK
Sbjct: 1088 GVSP--KLKEDIPLLVLAEVEK 1107
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 31.9 bits (72), Expect = 0.35
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 444 LIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIK 503
I K + SK R +A+S+ + + K + ++V +R+
Sbjct: 48 TIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIR------RLRVL 101
Query: 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRD 538
+ KYRD H L ++ KG F R
Sbjct: 102 RRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRA 136
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 31.2 bits (70), Expect = 0.64
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 446 AKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIK 503
AK K + A R+ A +K K+ + A K+ + V++
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural
genomics, PSI, protein structure initiative; 2.50A
{Bacillus subtilis} SCOP: d.296.1.1
Length = 220
Score = 31.0 bits (70), Expect = 0.98
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 362 ALTESVDVLFPNVGEVIGGSMRIWDPEEL---LAGYKREGIDPAPYYWY---TDQRKYGS 415
L E+V +GE ++ +E+ +A + R ++P W +R Y
Sbjct: 25 VLKETVRPKLTALGEHFAPTLSALTGDEMFPHVAKHARRSVNPPADSWVAFANSKRGYKK 84
Query: 416 TPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKLAA 458
PH GL V W Y K + K +
Sbjct: 85 LPHFQIGLWESHVFVWFAIIYESPIKEE-YGKLLEVNQETITK 126
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.5 bits (71), Expect = 1.1
Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 57/231 (24%)
Query: 378 IGGS-MRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERV-------- 428
+ + + P L GID GLG+ER+
Sbjct: 314 VATFGV--YSPVALSKY----GIDVPVMNL---------------GLGVERLAMISGNFA 352
Query: 429 --------------LCWLLNQYHVR-DKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEE 473
L V+ DK ++ ++ ++K K++ E
Sbjct: 353 DVREMVYPQFYEHKLNDRNVASMVKLDKVPVM--DEIYDLTKELIESCVKNKDLKSPCEL 410
Query: 474 DAEKREKNLEEAKKIVLK--EDPS----LPPAV--RIKIKDGEKYRDKRVTIFGWVHRLR 525
EK + K + + E L P++ I + DG + G +
Sbjct: 411 AIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPE-SFDGVKEEFK 469
Query: 526 RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576
+ + G +I + I + E A +S + + + I +
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEA-FVSNTTEFKVKVPIVRSL 519
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAF----LTFDDLLDKLEDLI 264
++ I + +R E + HL Y H A CA + +D E L+
Sbjct: 227 LFSIDRCFRREQKEDKSHLMTY-H-SASCAIAGEGVDINDGKAIAEGLL 273
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 30.6 bits (70), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 449 QLKKVSKLAARDNAKSESKAKKEEEDA-EKREKNLEEAKKIV 489
L+ + K+ +R E KAKKEE+ EK + L E K+ +
Sbjct: 162 HLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPI 203
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase,
alpha-helical domain, structural genomics; NMR {Mus
musculus} SCOP: a.4.9.1
Length = 104
Score = 28.9 bits (65), Expect = 1.9
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 442 YQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVR 501
Y + + KVS+ A + + +++ +E+ E + + E+ IV KE R
Sbjct: 31 YAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKE------VFR 84
Query: 502 IKIKDGEK 509
I + K
Sbjct: 85 SIILNEYK 92
>3mqz_A Uncharacterized conserved protein DUF1054; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
HET: MSE; 1.30A {Leptospirillum rubarum}
Length = 215
Score = 30.0 bits (67), Expect = 2.2
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 408 TDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKLA---------- 457
++R Y S H G +G + + + ++ + + + +
Sbjct: 88 PEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQWKKKVGDLR 147
Query: 458 --ARDNAKSESKAKKEEEDAEKREKNLEEAKK 487
+ + K E D + L K
Sbjct: 148 DFGPVHDDPMADPPKVEWDPRVFGERLGSLKS 179
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 30.2 bits (69), Expect = 2.6
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 36/144 (25%)
Query: 465 ESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIK-DGEKYRDKR--------- 514
E K + E+ + EK L+ +L + + ++ +++ D + Y D R
Sbjct: 404 EMKIRGEQSELEKERDQLQG----ILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 459
Query: 515 --------------VTI----FGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEH 556
VTI GWV + + + G A + ++
Sbjct: 460 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS----FKAAVKGKSNQ 515
Query: 557 ALLLSTESSVQFRGRIEKVPEGKS 580
++ + + +P +
Sbjct: 516 PVVFVDSTGRSYAIDPITLPSARG 539
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.9 bits (67), Expect = 3.0
Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 55/230 (23%)
Query: 378 IGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERV--------- 428
+ ++ P L GID GLG+ER+
Sbjct: 314 VATF-GVYSPVALSKY----GIDVPVMNL---------------GLGVERLAMISGNFAD 353
Query: 429 -------------LCWLLNQYHVR-DKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEED 474
L V+ DK ++ ++ ++K K++ E
Sbjct: 354 VREMVYPQFYEHKLNDRNVASMVKLDKVPVM--DEIYDLTKELIESCVKNKDLKSPCELA 411
Query: 475 AEKREKNLEEAKKIVLK--EDPS----LPPAV--RIKIKDGEKYRDKRVTIFGWVHRLRR 526
EK + K + + E L P++ I + DG + G +
Sbjct: 412 IEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPE-SFDGVKEEFKD 470
Query: 527 QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576
+ + G +I + I + E A +S + + + I +
Sbjct: 471 FLEKGKSEGVATGIRYIDALCFKITSKLEEA-FVSNTTEFKVKVPIVRSL 519
Score = 28.4 bits (63), Expect = 9.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAF----LTFDDLLDKLEDLI 264
++ I + +R E + HL Y H A CA + +D E L+
Sbjct: 227 LFSIDRCFRREQKEDKSHLMTY-H-SASCAIAGEGVDINDGKAIAEGLL 273
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 29.0 bits (66), Expect = 3.4
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 22/86 (25%)
Query: 251 LTFDDLLDKLEDLICDTVDRVMAT----HGDLVRQ------------MNPNFEPPARPFL 294
L+ +DL++ + L DR +A +
Sbjct: 13 LSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQM-LVLSDK- 70
Query: 295 RMNYADAIEYLRKHEIRKPDNTEYEF 320
A A + R+ E D + F
Sbjct: 71 -ATVAQAQRFFRRIE---LDCNDNLF 92
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 28.0 bits (62), Expect = 4.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 462 AKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKD---------GEKY 510
A++E K+ K + + EK++K L E +K+ L D +R K K+ EK+
Sbjct: 10 AQTERKSGKRQTEREKKKKILAERRKV-LAIDHLNEDQLREKAKELWQTIYNLEAEKF 66
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding
proteins, murein tripeptide, periplasmi protein; HET:
MHI; 2.07A {Escherichia coli}
Length = 519
Score = 29.5 bits (67), Expect = 4.1
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 467 KAKKEEEDAEKREKNLEEAKKIVLKEDPSLP 497
+A E + R + A+KI++++ P P
Sbjct: 454 QASTEN-TVKARNADYNAAEKILMEQAPIAP 483
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 29.4 bits (66), Expect = 4.2
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 397 EGIDPAPYYWYTDQRKY 413
+ I P YY Y
Sbjct: 566 DKIVPQYYYRTDSNGNY 582
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein,
ABC transport system; HET: GOL; 2.10A {Burkholderia
pseudomallei}
Length = 506
Score = 29.5 bits (67), Expect = 4.2
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 470 KEEEDAEKREKNLEEAKKIVLKEDPSLP 497
++ D R L +A + + + P +P
Sbjct: 444 NQKLDDGARAALLTQAHDLAMNDYPMVP 471
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 29.1 bits (66), Expect = 4.6
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 467 KAKKEEEDAEKREKNLEEAKKIVLKEDPSLP 497
K D +R + +A++ + K+ +P
Sbjct: 452 DTLKVA-DDTQRSELYAKAEQQLDKDSAIVP 481
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 28.5 bits (63), Expect = 4.8
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 444 LIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIK 503
LI + + S+ R N + K + K N +K+ +RI
Sbjct: 49 LIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMR------RMRIL 102
Query: 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRD 538
+ +YR+ + H L + KG +F R
Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRI 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 28.0 bits (63), Expect = 5.0
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 446 AKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKK 487
A A L++ LA A+K+ N E ++
Sbjct: 96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo
medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A
1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Length = 70
Score = 26.6 bits (59), Expect = 5.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKIKDGEK----YRDKRVTIF 518
K +++A++ P + +G R RV +F
Sbjct: 16 KTVDQAREYFTLHYPQYNVYF---LPEGSPVTLDLRYNRVRVF 55
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P;
1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB:
1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I
1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I*
1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Length = 64
Score = 26.6 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKIKDGEK----YRDKRVTIF 518
K++EEAKK++L++ P+ V + G YR RV +F
Sbjct: 11 KSVEEAKKVILQDKPAAQIIV---LPVGTIVTKEYRIDRVRLF 50
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA
binding protein, OB-fold, dioxan replication, DNA
binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3
PDB: 2pqa_B 2z6k_C
Length = 142
Score = 28.0 bits (62), Expect = 5.6
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 498 PAVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA 557
P RI ++ DK V G + ++ GK L DG G + +
Sbjct: 29 PRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKM---FILSDGEG------KNGTIELMEP 79
Query: 558 LLLSTESSVQFRGRIE 573
L V+ GR+
Sbjct: 80 LDEEISGIVEVVGRVT 95
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 29.0 bits (65), Expect = 5.9
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 334 DQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI------GGSMRIWDP 387
I R I K++ NP ++ + +L + I GG++ P
Sbjct: 581 MDIRRKIK--------KAYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTP 632
Query: 388 EELLAGYKREGIDPA 402
E L+A + PA
Sbjct: 633 EALVADCGSGALHPA 647
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 28.7 bits (65), Expect = 5.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 504 IKDGEKYRDKRVTIFG 519
+ D +K+ +RV I G
Sbjct: 146 VDDLQKFAGRRVAILG 161
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.2 bits (65), Expect = 6.0
Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 55/230 (23%)
Query: 378 IGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERV--------- 428
+ ++ P L GID GLG+ER+
Sbjct: 314 VATF-GVYSPVALSKY----GIDVPVMNL---------------GLGVERLAMISGNFAD 353
Query: 429 -------------LCWLLNQYHVR-DKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEED 474
L V+ DK ++ ++ ++K K++ E
Sbjct: 354 VREMVYPQFYEHKLNDRNVASMVKLDKVPVM--DEIYDLTKELIESCVKNKDLKSPCELA 411
Query: 475 AEKREKNLEEAKKIVLK--EDPS----LPPAV--RIKIKDGEKYRDKRVTIFGWVHRLRR 526
EK + K + + E L P++ I + DG + G +
Sbjct: 412 IEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPE-SFDGVKEEFKD 470
Query: 527 QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 576
+ + G +I + I + E A +S + + + I +
Sbjct: 471 FLEKGKSEGVATGIRYIDALCFKITSKLEEA-FVSNTTEFKVKVPIVRSL 519
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 28.8 bits (65), Expect = 6.0
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 346 PADIKSFYMS-KCPE-----NPALTESVDVLFPNVGEVI-------GGSMRIWDPEELLA 392
P +++ CP NP L + + P G+++ GG + EEL
Sbjct: 229 PEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAE 288
Query: 393 GYKREGIDPA 402
+K + P
Sbjct: 289 DFKSGQLHPL 298
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A
{Momordica charantia}
Length = 68
Score = 26.6 bits (59), Expect = 6.0
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAV----RIKIKDGEKYRDKRVTIF 518
AK ++ +E+P + + KD +R RV ++
Sbjct: 15 STGAAAKAVIERENPRVRAVIIKVGSGATKD---FRCDRVRVW 54
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 28.1 bits (63), Expect = 6.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 554 TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588
T L +++ GR+ P+ S H+L+
Sbjct: 117 TPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLE 151
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase
inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Length = 70
Score = 26.6 bits (59), Expect = 6.2
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKIKDGEK----YRDKRVTIF 518
K+ A V +E+ ++ V +K+G +R RV +
Sbjct: 17 KSGNMAAATVERENRNVHAIV---LKEGSAMTKDFRCDRVWVI 56
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 28.7 bits (65), Expect = 6.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 504 IKDGEKYRDKRVTIFG 519
+K +++ KRV I G
Sbjct: 144 VKSKAEFQGKRVLIVG 159
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet,
sugar binding protein, signaling protein; HET: CBS;
2.20A {Vibrio cholerae} PDB: 1zty_A*
Length = 529
Score = 28.5 bits (64), Expect = 7.4
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDGEKYRDKRVTIFGW 520
+ D ++ +KI+ + ++P + +Y R T GW
Sbjct: 454 YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWM---YQYNTTRFT--GW 499
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein
complex, center for eukaryotic structural genomics, PSI;
HET: MSE; 1.98A {Homo sapiens} PDB: 1quq_B 1l1o_A
Length = 121
Score = 27.2 bits (60), Expect = 7.9
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 498 PAVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA 557
P RI ++ DK V G + ++ GK L DG G + +
Sbjct: 8 PRSRINAGMLAQFIDKPVCFVGRLEKIHPTGK---MFILSDGEG------KNGTIELMEP 58
Query: 558 LLLSTESSVQFRGRIE 573
L V+ GR+
Sbjct: 59 LDEEISGIVEVVGRVT 74
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural
genomics, PSI-2, protein structure initiative; 1.65A
{Enterococcus faecalis}
Length = 229
Score = 27.9 bits (63), Expect = 9.0
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 467 KAKKEEE-DAEKREKNLEEAKKIVLKEDPSLP 497
A + D EKR ++ A+K ++ + +P
Sbjct: 193 AASSADATDPEKRWDDMLNAEKTIMGDMGVVP 224
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 27.7 bits (61), Expect = 9.7
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 444 LIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIK 503
I K + SK R +A+S+ + + K + ++V +R+
Sbjct: 49 TIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIR------RLRVL 102
Query: 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLR 537
+ KYRD H L ++ KG F R
Sbjct: 103 RRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKR 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.416
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,513,776
Number of extensions: 675373
Number of successful extensions: 2158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2051
Number of HSP's successfully gapped: 124
Length of query: 658
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 558
Effective length of database: 3,909,693
Effective search space: 2181608694
Effective search space used: 2181608694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)