RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8087
(658 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 168 bits (426), Expect = 7e-48
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 16/278 (5%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYR 228
++ P +V+ EGGS LF +++F + AYL QS QLY + + VY +A +R
Sbjct: 32 QDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWR 91
Query: 229 AENSRTRRHLAEYTHVEAECAFLTF-DDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE 287
E T RHL EY ++ E F+ +DL+ E L+ + ++ + T GD +R + +
Sbjct: 92 MEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP 151
Query: 288 PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR-----PIML 342
+ R+ +A+A L++ Y G+D+ E ER + + + +
Sbjct: 152 SFPQDIPRLTHAEAKRILKEE-------LGYPVGQDLSEEAERLLGEYAKERWGSDWLFV 204
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA 402
R+P ++ FY + L E+ G RI EELL K +G+DP
Sbjct: 205 TRYPRSVRPFYTYPEEDGTTR---SFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE 261
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++ Y + KYG PHGG+ +G ER+ LL +VR
Sbjct: 262 AFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRY 299
Score = 42.1 bits (98), Expect = 1e-04
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 620 RHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
R++ +RGE L +++ L++ R + +++TE+
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIF 38
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 145 bits (366), Expect = 1e-39
Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 45/283 (15%)
Query: 169 NGIAKVTPPTLVQTQV-------EGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDV 220
G + P + G + +G LT S L+ + + L +
Sbjct: 31 EGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKI 90
Query: 221 YCIAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDL 278
+ ++ + R E+ + RH E+T ++ E +D++ +E L+ + G
Sbjct: 91 FVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGR- 149
Query: 279 VRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR 338
P + F Y++ +E E + E + +IP + D R
Sbjct: 150 -------EFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWR 202
Query: 339 PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
L +L GEV G R W+ E+++A ++ G
Sbjct: 203 NYDL--------------------------ILPYGYGEVASGGEREWEYEKIVAKIRKAG 236
Query: 399 IDPAPYYWYTDQRKYGS-TPHGGYGLGLERVLCWLLNQYHVRD 440
++ + Y + K G P G G+G+ER++ +++ H+ +
Sbjct: 237 LNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAE 279
Score = 38.6 bits (89), Expect = 0.002
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 621 HIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ I S L +++ +L+ + F + +
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWL 36
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 145 bits (367), Expect = 4e-39
Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 12/283 (4%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQS 226
+V P L+ EGGS++F + +F AYL QS Q + + A VY I
Sbjct: 60 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPV 119
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+RAENS T RH+ E+T ++ E AF + ++LD L +L + + +
Sbjct: 120 FRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 179
Query: 286 FE------PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP 339
+ P +R+ Y + IE LR ++ + E E+ + +
Sbjct: 180 YPVEEFKLPKDGKMVRLTYKEGIEMLRAA-GKEIGDFEDLSTENEKFLGKLVRDKYDTDF 238
Query: 340 IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGI 399
+L +FP +I+ FY P NP + S F E++ G+ RI D L K G+
Sbjct: 239 YILDKFPLEIRPFYTMPDPANPKYSNS-YDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 400 DPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P Y D YG PH G G+GLERV+ + L+ ++R
Sbjct: 298 SPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRR 340
Score = 48.7 bits (115), Expect = 1e-06
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 614 DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
D +LD R I +R + +++ + + R + A + +TEV
Sbjct: 25 DTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEV 66
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 136 bits (343), Expect = 4e-36
Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 4/274 (1%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
NG ++ P ++ T EGG+ LF + +F E A+L +S QLY E + + L VY IA +
Sbjct: 51 NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIF 110
Query: 228 RAENSRTRRHLAE-YTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF 286
RAE T RHL E ++ ++++ LE L+ ++ V + + +N
Sbjct: 111 RAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 170
Query: 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346
E P PF R++Y A+E L P E E + + M ++ L ++P
Sbjct: 171 EEPKLPFPRVSYDKALEILGDLGKEIPWG-EDIDTEGERLLGKYMMENENAPLYFLYQYP 229
Query: 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYW 406
++ K FY+ K P + + D+ + V E+ G R + L+ K +G++P + +
Sbjct: 230 SEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEF 288
Query: 407 YTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 289 YLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 322
Score = 49.5 bits (117), Expect = 7e-07
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 614 DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
D +L+NR + +R + +RS + +A+R F + + E+
Sbjct: 15 DTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEI 56
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 133 bits (335), Expect = 7e-35
Identities = 57/300 (19%), Positives = 107/300 (35%), Gaps = 32/300 (10%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
A G +V P + + F N YL + +LYL+ + +
Sbjct: 39 ARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEIN 98
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+ RH E+T +E A+ + DL++ E L V+ T +
Sbjct: 99 RNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT---KVTYGEH 155
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNT-----------------EYEFGEDIPEMP 328
+PF ++ +AI+ R + + G + E+
Sbjct: 156 VFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIF 215
Query: 329 ERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPE 388
+ + +P + +PA++ + NP +T+ + F E+ G + D E
Sbjct: 216 DEVAEAHLIQPTFITEYPAEVSPLAR-RNDVNPEITDRFE-FFIGGREIGNGFSELNDAE 273
Query: 389 ELLAGY------KREGIDPAPYY--WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + K G D A +Y Y +YG P G G+G++R++ N + +RD
Sbjct: 274 DQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRD 333
Score = 48.7 bits (115), Expect = 1e-06
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 613 PDVQLDNRHI-MIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+V+ R++ +I + + + ++RS +L A+R R + EV
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVE 46
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 127 bits (320), Expect = 6e-33
Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 27/281 (9%)
Query: 169 NGIAKVTPPTLVQTQVEGGS--TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY-CIAQ 225
+G + P L + EG + S G+ L QS QL+ + + + D Y I +
Sbjct: 49 HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVK 108
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+R E+ R R E+T ++ E +F+T + + +E L+ V
Sbjct: 109 CFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLG-------- 159
Query: 286 FEPPARPFLRMNYADAIEYL--RKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343
F M +A+A K ++R + D P M E +
Sbjct: 160 ------DFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFP-MFEDDGEGGLTAMHHPF 212
Query: 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
P D+ + + PEN + D+ N EV GGS+RI + + + GI+
Sbjct: 213 TSPKDMTAAELKAAPENAV-ANAYDM-VINGYEVGGGSVRIHNGDMQQTVFGILGINEEE 270
Query: 404 ----YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + D KYG+ PH G GL+R+ L ++RD
Sbjct: 271 QREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRD 311
Score = 48.2 bits (114), Expect = 1e-06
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 608 NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
N + +L R++ +R ++ L R+ + +R D + ++
Sbjct: 7 NHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIE 55
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 112 bits (281), Expect = 1e-27
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 28/283 (9%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLPA-LGDVYCIA 224
G +V P L ++ EG + G L QS QL+ + + A L + IA
Sbjct: 56 REGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIA 115
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP 284
+ +R E+ R R ++T ++ E +F+ +D+L+ E L+ + L
Sbjct: 116 RCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPL------ 168
Query: 285 NFEPPARPFLRMNYADAI-EYLRKHEIRKPDNTEYEFGEDIP--EMPERKMTDQINRPIM 341
PF R++Y +A+ Y + + + + D P E E +
Sbjct: 169 -------PFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPF 221
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
P D + + + D+ N EV GGS+RI DP ++ GI
Sbjct: 222 TSPHPED---LPLLEKDPGRVRALAYDL-VLNGVEVGGGSIRIHDPRLQARVFRLLGIGE 277
Query: 402 AP----YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ ++ + +YG+ PHGG GL+R+L + +R+
Sbjct: 278 EEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320
Score = 50.9 bits (121), Expect = 2e-07
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 608 NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+EA +++L R++ +R L +R +++A+ + +V
Sbjct: 15 EKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQV 62
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 76.4 bits (188), Expect = 1e-17
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 500 VRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
+R+ ++D + + + V + G++H R G+ + F+ LRD SG +Q T L
Sbjct: 1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQ-------VVTGGLKL 52
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
ES+++ RG V E APGG E++ EV+ A
Sbjct: 53 PLPESALRVRG---LVVENAKAPGGLEVQAKEVEVLSPA 88
Score = 30.2 bits (68), Expect = 0.18
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
+ F+ LRD SG +Q T L ES+++ RG + + + ++ +
Sbjct: 29 GRIQFLLLRDRSGVVQ-------VVTGGLKLPLPESALRVRGLVVENAKAPGGLE-VQAK 80
Query: 147 SYAIV 151
++
Sbjct: 81 EVEVL 85
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 73.2 bits (179), Expect = 5e-16
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 500 VRIKIKD--GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL------ADIL 551
R+K D K DK V VH R+QG L F+TLR + IQ ++
Sbjct: 22 KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISK 81
Query: 552 CQTEHALLLSTESSVQFRGRIEKVPEG--KSAPGGHELKVDYWEVVGLAP 599
+ A L+ ES V RG ++KV E + E+ + + P
Sbjct: 82 NMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP 131
Score = 41.2 bits (96), Expect = 6e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVL------ADILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
G L F+TLR + IQ ++ + A L+ ES V RG ++KV E
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPI 109
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 67.0 bits (163), Expect = 2e-14
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTES 564
E+ ++V + GWV ++ G + F+ +RD G +Q + L +E
Sbjct: 12 EELNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSED 70
Query: 565 SVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
V G + P+ G E+ + V+ A
Sbjct: 71 VVAVEGVVNFTPKA---KLGFEILPEKIVVLNRA 101
Score = 36.2 bits (83), Expect = 0.002
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 87 KGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEENMKVQLI 143
G+ F+ +RD G +Q + L +E V G + P+ + +++
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEIL 91
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 64.7 bits (157), Expect = 2e-13
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQ 567
E + + V + GWV+R R G + F+ LRD G +Q V A + E V+
Sbjct: 12 ETHVGEEVVLEGWVNRRRDLGGLI-FLDLRDREGLVQLVAHPASPAYATAERVRPEWVVR 70
Query: 568 FRGRIEKVPEG--KSAPGGHELKVDYWEVVGLA 598
+G + PE + A G E+++ EV+ A
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
Score = 38.1 bits (88), Expect = 3e-04
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK 139
GL+F+ LRD G +Q V A + E V+ +G + PE N +
Sbjct: 32 GGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPR 84
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 63.9 bits (155), Expect = 3e-13
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSV 566
+ ++VT+ GWV+R R G + F+ +RD G +Q D + A L E +
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLI-FIDMRDREGIVQVFFDPDRADALKLASELRNEFCI 69
Query: 567 QFRGRIEKVPEG----KSAPGGHELKVDYWEVVGLA 598
Q G + E A G E+ ++ A
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
Score = 35.0 bits (80), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 87 KGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
L+F+ +RD G +Q D + A L E +Q G + E+N
Sbjct: 31 GSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKN 82
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 31.5 bits (71), Expect = 0.40
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 431 WLLNQYHVRDKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVL 490
W++ ++ ++ K K K E A + E+N EEA K V
Sbjct: 209 WIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVN 268
Query: 491 K--EDPSLPPAVRIKIKDGEKYRDKRVTIFGWV 521
+P ++ D + T W+
Sbjct: 269 TALNTTQIPSSIEDIFNDDRCINITKQTPSFWI 301
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 30.6 bits (69), Expect = 0.57
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 501 RIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVT 535
I IK+ +KY + + + R GK + +T
Sbjct: 174 NIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILT 208
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita
maxima) [TaxId: 3661]}
Length = 68
Score = 28.1 bits (63), Expect = 0.61
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAV----RIKIKDGEKYRDKRVTIF 518
AK I+ +++P++ + KD +R RV I+
Sbjct: 15 VGGSVAKAIIERQNPNVKAVILEEGTPVTKD---FRCNRVRIW 54
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 118
Score = 29.1 bits (65), Expect = 0.72
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 426 ERVLCWLLNQYHVRDKYQLIAKAQLKKVSKLAARDNAKSESKAK------KEEEDAEKRE 479
E+VL N + + L + + A D + ++K + K E AE+ +
Sbjct: 47 EQVLKVCANHW-ITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFK 105
Query: 480 KNLEEAKKIVLKE 492
+ EE +++ L +
Sbjct: 106 QKFEECQRL-LLD 117
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 29.0 bits (63), Expect = 1.1
Identities = 10/90 (11%), Positives = 19/90 (21%)
Query: 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVR 280
A + +A + + D+V
Sbjct: 73 MMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYAL 132
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEI 310
+ + P R + + I Y H I
Sbjct: 133 KPDIKVIAPWREWSFQGRKEMIAYAEAHGI 162
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum
usitatissimum) [TaxId: 4006]}
Length = 69
Score = 27.0 bits (60), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 480 KNLEEAKKIVLKEDPSLPPAV----RIKIKDGEKYRDKRVTIF 518
K+ A V +E+ ++ V KD +R RV +
Sbjct: 16 KSGNMAAATVERENRNVHAIVLKEGSAMTKD---FRCDRVWVI 55
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 64
Score = 26.5 bits (59), Expect = 1.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKI-KDGEK----YRDKRVTIF 518
K++EEAKK++L++ P+ +I + G YR RV +F
Sbjct: 11 KSVEEAKKVILQDKPA----AQIIVLPVGTIVTKEYRIDRVRLF 50
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId:
6421]}
Length = 63
Score = 26.6 bits (59), Expect = 1.8
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 480 KNLEEAKKIVLKEDPSLPPAVRIKI-KDGEK----YRDKRVTIF 518
K +++A++ P + +G R RV +F
Sbjct: 9 KTVDQAREYFTLHYPQ----YNVYFLPEGSPVTLDLRYNRVRVF 48
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus
thermophilus [TaxId: 274]}
Length = 193
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 39 AGGGGSLLPFPLFPSPCEVGYITCEGPAG 67
AGG + F F P V + + G
Sbjct: 103 AGGAKATAAFLRFRDPVMVESLKAQAHGG 131
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 28.0 bits (62), Expect = 2.9
Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 29/80 (36%)
Query: 10 CPKAVKIPPRGC-----QFAQSPYGVYP----PTSFSTAGGGGSLLPFPLFPSPCEVGY- 59
CP +K P GC F S Y PT +S F C +
Sbjct: 134 CPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYS-----------RFFKRLCPDAFS 182
Query: 60 --------ITCEGPAGYIIT 71
+TC G + Y +T
Sbjct: 183 YVLDKPTTVTCPGSSNYRVT 202
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 26.3 bits (58), Expect = 4.8
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 18/99 (18%)
Query: 395 KREGIDPAPYYWY--TDQRK------------YGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ G P Y D + Y + E+V W+L +
Sbjct: 7 AKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPEKVKEWVLKGVELSH 66
Query: 441 KYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKRE 479
+ AKA L L E K + EKRE
Sbjct: 67 R----AKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 175
Score = 26.9 bits (59), Expect = 5.7
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 47 PFPLFPSPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCV 104
PF F S C V CE GY + + P A GF QCV
Sbjct: 80 PFTHFKSECPVSTRDCEPVFGYTVAGEFRVIVQAPRA---------------GFRQCV 122
>d1nh1a_ e.45.1.1 (A:) Type III effector AvrB {Pseudomonas syringae
[TaxId: 317]}
Length = 290
Score = 27.2 bits (60), Expect = 5.9
Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 16/111 (14%)
Query: 252 TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE---PPARPFLRMNYADAIEYLRKH 308
+F++L + + + R + + + + P +P Y + + H
Sbjct: 60 SFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKP-----YKSVLARVVDH 114
Query: 309 ---EIRKPDNTEYEFGEDIPEMPERKMTDQIN-RPIMLCRFPADIKSFYMS 355
+ + + T ++ I L F + Y+
Sbjct: 115 EDAHDEIMQD----NLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLR 161
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 27.1 bits (58), Expect = 5.9
Identities = 6/62 (9%), Positives = 13/62 (20%)
Query: 297 NYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSK 356
A A + +PD E I + ++++
Sbjct: 52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111
Query: 357 CP 358
Sbjct: 112 GI 113
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 175
Score = 26.5 bits (58), Expect = 8.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 368 DVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
DV+ +GEVI G++ ++L G + AP
Sbjct: 143 DVIETAIGEVIPGALISGPAGQILGGL---SLQQAP 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.416
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,570,333
Number of extensions: 129272
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 43
Length of query: 658
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 567
Effective length of database: 1,158,166
Effective search space: 656680122
Effective search space used: 656680122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)