BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8088
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 11/222 (4%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
+G++Y GGVASGF HV N ++L+Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 163 SGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 222
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + GS + R ERLKA V+ IRD + +GRA V + +E + P + + LG
Sbjct: 223 NIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQV---LGPKPA 279
Query: 162 NQVADVPYGGDD-AEFETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFIL 219
+P G +D A+ + K KLYK+S+ +G + L+ ++ P AQ +L D FIL
Sbjct: 280 -----LPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFIL 334
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTK 260
D G I+VW GK + T E+ LK F+T +YP T+
Sbjct: 335 DHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQ 376
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 62 APGEKKLYQIKGKKN--IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKA 119
AP +L+Q++ R +V G++N D F L T ++VG+ A+ E+ A
Sbjct: 559 APASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGA 618
Query: 120 ISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK 179
+ +R Q + E S P F+ LG + + + P D K
Sbjct: 619 QELLRVLRAQPVQ-------VAEGSEP---DGFWEALGGKAAYRTS--PRLKD-----KK 661
Query: 180 QD-KAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236
D +L+ S+ G +IE++P L Q+ L D +LDT ++VW+GKDS
Sbjct: 662 MDAHPPRLFACSNKIGRF---VIEEVPGELMQEDLATDDVMLLDTWDQ-VFVWVGKDSQE 717
Query: 237 AEKVEGLKRGQAFL 250
EK E L + ++
Sbjct: 718 EEKTEALTSAKRYI 731
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD---HNGRATVSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + + D + R ++++ + P
Sbjct: 697 DVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSF 756
Query: 150 TRFF 153
+F
Sbjct: 757 VGWF 760
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 11/223 (4%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
+G++Y GGVASGF HV N ++L+Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 114 SGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 173
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + GS + R ERLKA V+ IRD + +GRA V + +E + P + + LG
Sbjct: 174 NIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQV---LGPKPA 230
Query: 162 NQVADVPYGGDD-AEFETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFIL 219
+P G +D A+ + K KLYK+S+ +G + L+ ++ P AQ +L D FIL
Sbjct: 231 -----LPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFIL 285
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKT 261
D G I+VW GK + T E+ LK F+T +YP T+
Sbjct: 286 DHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQV 328
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 18/244 (7%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
+G++Y GGVASGF HV N ++L Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 112 SGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 171
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + GSK+ R ERLKA V+ IRD + +GRA VS+ +E + P + + LG
Sbjct: 172 NIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQV---LGPKPT 228
Query: 162 NQVADVPYGGDDAEFETKQD-KAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFIL 219
+P +D E + K KLYK+S+ +G + L+ ++ P AQ +L D FIL
Sbjct: 229 -----LPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFIL 283
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278
D G I+VW GK + E+ LK F++ +YP +T + V E E
Sbjct: 284 DHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPK-------QTQVSVLPEGGETP 336
Query: 279 LVHQ 282
L Q
Sbjct: 337 LFRQ 340
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 62 APGEKKLYQIKGKKNIRVRQVAL--SVGSMNKGDCFALDTGREVLVYVGSKAARTERLKA 119
AP +L+Q++ + R V + G++N D F L T ++VG+ A+ E+ A
Sbjct: 508 APASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGA 567
Query: 120 ISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK 179
+ +R Q + E S P F+ LG + + + P D K
Sbjct: 568 QELLRVLRAQPVQ-------VAEGSEP---DSFWEALGGKATYRTS--PRLKD-----KK 610
Query: 180 QD-KAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236
D +L+ S+ G +IE++P Q+ L D +LDT ++VW+GKDS
Sbjct: 611 MDAHPPRLFACSNKIGRF---VIEEVPGEFMQEDLATDDVMLLDTWDQ-VFVWVGKDSQD 666
Query: 237 AEKVEGLKRGQAFL 250
EK E L + ++
Sbjct: 667 EEKTEALTSAKRYI 680
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD--HNGRAT-VSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + D D H R T ++++ + P
Sbjct: 646 DVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSF 705
Query: 150 TRFF 153
+F
Sbjct: 706 VGWF 709
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 18/244 (7%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
+G++Y GGVASGF HV N ++L Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 110 SGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 169
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + GSK+ R ERLKA V+ IRD + +GRA VS+ +E + P + + LG
Sbjct: 170 NIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQV---LGPKPT 226
Query: 162 NQVADVPYGGDDAEFETKQD-KAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFIL 219
+P +D E + K KLYK+S+ +G + L+ ++ P AQ +L D FIL
Sbjct: 227 -----LPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFIL 281
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278
D G I+VW GK + E+ LK F++ +YP +T + V E E
Sbjct: 282 DHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPK-------QTQVSVLPEGGETP 334
Query: 279 LVHQ 282
L Q
Sbjct: 335 LFRQ 338
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 62 APGEKKLYQIKGKKNIRVRQVAL--SVGSMNKGDCFALDTGREVLVYVGSKAARTERLKA 119
AP +L+Q++ + R V + G++N D F L T ++VG+ A+ E+ A
Sbjct: 506 APASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGA 565
Query: 120 ISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK 179
+ +R Q + E S P F+ LG + + + P D K
Sbjct: 566 QELLRVLRAQPVQ-------VAEGSEP---DSFWEALGGKATYRTS--PRLKD-----KK 608
Query: 180 QD-KAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236
D +L+ S+ G +IE++P Q+ L D +LDT ++VW+GKDS
Sbjct: 609 MDAHPPRLFACSNKIGRF---VIEEVPGEFMQEDLATDDVMLLDTWDQ-VFVWVGKDSQD 664
Query: 237 AEKVEGLKRGQAFL 250
EK E L + ++
Sbjct: 665 EEKTEALTSAKRYI 678
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD--HNGRAT-VSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + D D H R T ++++ + P
Sbjct: 644 DVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSF 703
Query: 150 TRFF 153
+F
Sbjct: 704 VGWF 707
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 17/226 (7%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
+G++Y GGVASGF HV N ++L Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 111 SGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 170
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + GSK+ R ERLKA V+ IRD + +GRA VS+ +E + P + + LG
Sbjct: 171 NIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQV---LGPKPT 227
Query: 162 NQVADVPYGGDDAEFETKQD----KAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDT 216
+P +D K+D K KLYK+S+ +G + L+ ++ P AQ +L D
Sbjct: 228 -----LPEATEDT---VKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDC 279
Query: 217 FILDTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKT 261
FILD G I+VW GK + E+ LK F++ +YP T+
Sbjct: 280 FILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQV 325
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 125/250 (50%), Gaps = 21/250 (8%)
Query: 38 SFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFAL 97
S+ G++Y GGV SGF HV N ++LYQ+KGKKNIR + AL+ S N GDCF L
Sbjct: 108 SYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFIL 167
Query: 98 DTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFF---T 154
D G+ + + G K+ ER KA +A IRD + G+A V I+ + P E+ +
Sbjct: 168 DLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKP 227
Query: 155 ELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVK-SELIEQIPLAQKSLNQ 213
L G+ +D + +A LYK+SDA+G + +++ + P A + L
Sbjct: 228 ALKEGNPE---------EDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLIS 278
Query: 214 GDTFILDTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWA 272
D F+LD G IY+W G+ + E+ L+ + F++ Y T +E+
Sbjct: 279 DDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAP-------NTQVEILP 331
Query: 273 EEKEEALVHQ 282
+ +E + Q
Sbjct: 332 QGRESPIFKQ 341
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 38 SFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFAL 97
S+ G++Y GGV SGF HV N ++LYQ+KG KNIR + AL+ S N GDCF L
Sbjct: 108 SYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGAKNIRATERALNWDSFNTGDCFIL 167
Query: 98 DTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFF---T 154
D G+ + + G K+ ER KA +A IRD + G+A V I+ + P E+ +
Sbjct: 168 DLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKP 227
Query: 155 ELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVK-SELIEQIPLAQKSLNQ 213
L G+ +D + +A LYK+SDA+G + +++ + P A + L
Sbjct: 228 ALKEGNPE---------EDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLIS 278
Query: 214 GDTFILDTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWA 272
D F+LD G IY+W G+ + E+ L+ + F++ Y T +E+
Sbjct: 279 DDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAP-------NTQVEILP 331
Query: 273 EEKEEALVHQ 282
+ +E + Q
Sbjct: 332 QGRESPIFKQ 341
>pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound
Length = 104
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 66 KKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQ 125
++L+Q+KG++ +R +V +S S N GDCF LD G + + GS + R ERLKA V+
Sbjct: 3 QRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62
Query: 126 IRDQDHNGRATVSIIDENSSP 146
IRD + +GRA V + +E + P
Sbjct: 63 IRDNERSGRARVHVSEEGTEP 83
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 203 QIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVE 241
++P++ +S N GD FILD + + I+ W G +S E+++
Sbjct: 18 EVPVSWESFNNGDCFILD-LGNNIHQWCGSNSNRYERLK 55
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure
Length = 114
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 53 SGFNHVDINAPGEKK--LYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSK 110
SGFNHV P E K L I G KN +V +V L+ S+N GDCF LD G + + GSK
Sbjct: 1 SGFNHVK---PTEYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSK 57
Query: 111 AARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
++ E+ KA VA I D + G V + E S + F+ LG
Sbjct: 58 SSPQEKNKAAEVARAI-DAERKGLPKVEVFXETDSDIPA-EFWKLLG 102
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 197 KSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK 239
K+ + ++PLA SLN GD F+LD + IY + G S+ EK
Sbjct: 22 KNAKVAEVPLATSSLNSGDCFLLDAGLT-IYQFNGSKSSPQEK 63
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution
pdb|1SVR|A Chain A, Structure Of Severin Domain 2 In Solution
Length = 114
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 53 SGFNHVDINAPGEKK--LYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSK 110
SGFNHV P E K L I G KN +V +V L+ S+N GDCF LD G + + GSK
Sbjct: 1 SGFNHVK---PTEYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSK 57
Query: 111 AARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
++ E+ KA VA I D + G V + E S + F+ LG
Sbjct: 58 SSPQEKNKAAEVARAI-DAERKGLPKVEVFCETDSDIPA-EFWKLLG 102
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 197 KSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK 239
K+ + ++PLA SLN GD F+LD + IY + G S+ EK
Sbjct: 22 KNAKVAEVPLATSSLNSGDCFLLDAGLT-IYQFNGSKSSPQEK 63
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 26/194 (13%)
Query: 62 APGEKKLYQIKGKKN--IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKA 119
AP +L+Q++ + R +V G++N D F L T ++VG+ A+ E+ A
Sbjct: 119 APASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGASEAEKTAA 178
Query: 120 ISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK 179
+ +R Q ++E S P F+ LG ++ + + P D K
Sbjct: 179 QELLKVLRSQHVQ-------VEEGSEP---DGFWEALGGKTSYRTS--PRLKD-----KK 221
Query: 180 QD-KAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236
D +L+ S+ G +IE++P L Q+ L D +LDT ++VW+GKDS
Sbjct: 222 MDAHPPRLFACSNRIGRF---VIEEVPGELMQEDLATDDVMLLDTWDQ-VFVWVGKDSQE 277
Query: 237 AEKVEGLKRGQAFL 250
EK E L + ++
Sbjct: 278 EEKTEALTSAKRYI 291
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD---HNGRATVSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + + D + R ++++ + P
Sbjct: 257 DVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVRQGFEPPSF 316
Query: 150 TRFF 153
+F
Sbjct: 317 VGWF 320
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 32/192 (16%)
Query: 67 KLYQIKGKKNI----RVRQVALSVGSMNKGDCFALDTGREV-LVYVGSKAARTERLKAIS 121
+L+Q++ +N+ R+ +V + S+N D F L + ++VG A++ E A
Sbjct: 167 RLFQVR--RNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEY 224
Query: 122 VANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK-Q 180
VA+ ++ I E P E F+ LG + Q + + ET+ +
Sbjct: 225 VASVLK-------CKTLRIQEGEEPEE---FWNSLGGKKDYQTSPL--------LETQAE 266
Query: 181 DKAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAE 238
D +LY S+ +G +IE+IP Q L + D +LD I++WIGKD+ E
Sbjct: 267 DHPPRLYGCSNKTGRF---VIEEIPGEFTQDDLAEDDVMLLDAWEQ-IFIWIGKDANEVE 322
Query: 239 KVEGLKRGQAFL 250
K E LK + +L
Sbjct: 323 KKESLKSAKMYL 334
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNG---RATVSIIDENSSPVEV 149
D LD ++ +++G A E+ +++ A + D +G R + II + P
Sbjct: 300 DVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHEPPTF 359
Query: 150 TRFF 153
T +F
Sbjct: 360 TGWF 363
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 61 NAPGEKKLYQIKGKKN--IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLK 118
AP +L+Q++ R +V G++N D F L T ++VG+ A+ E+
Sbjct: 120 TAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTG 179
Query: 119 AISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFET 178
A + +R Q + E S P F+ LG + + + P D
Sbjct: 180 AQELLRVLRAQPVQ-------VAEGSEP---DGFWEALGGKAAYRTS--PRLKD-----K 222
Query: 179 KQD-KAVKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDST 235
K D +L+ S+ G +IE++P L Q+ L D +LDT ++VW+GKDS
Sbjct: 223 KMDAHPPRLFACSNKIGRF---VIEEVPGELMQEDLATDDVMLLDTWDQ-VFVWVGKDSQ 278
Query: 236 TAEKVEGLKRGQAFLTNN 253
EK E L + ++ +
Sbjct: 279 EEEKTEALTSAKRYIETD 296
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD---HNGRATVSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + + D + R ++++ + P
Sbjct: 259 DVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSF 318
Query: 150 TRFF 153
+F
Sbjct: 319 VGWF 322
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 61 NAPGEKKLYQIKGKKN--IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLK 118
AP +L+Q++ R +V G++N D F L T ++VG+ A+ E+
Sbjct: 120 TAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTG 179
Query: 119 AISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFET 178
A + +R Q + E S P F+ LG + + + +
Sbjct: 180 AQELLRVLRAQPVQ-------VAEGSEP---DGFWEALGGKAAYRTS--------PRLKD 221
Query: 179 KQDKA--VKLYKISDASGNVKSELIEQIP--LAQKSLNQGDTFILDTVTSGIYVWIGKDS 234
K+ A +L+ S+ G +IE++P L Q+ L D +LDT ++VW+GKDS
Sbjct: 222 KKMDAHPPRLFACSNKIGRF---VIEEVPGELMQEDLATDDVMLLDTWDQ-VFVWVGKDS 277
Query: 235 TTAEKVEGLKRGQAFLTNN 253
EK E L + ++ +
Sbjct: 278 QEEEKTEALTSAKRYIETD 296
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 93 DCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQD---HNGRATVSIIDENSSPVEV 149
D LDT +V V+VG + E+ +A++ A + + D + R ++++ + P
Sbjct: 259 DVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSF 318
Query: 150 TRFF 153
+F
Sbjct: 319 VGWF 322
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 67 KLYQIKGK--KNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVAN 124
+L+Q++G N + +V +N D F L T ++ G + ER A VA+
Sbjct: 180 RLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVAD 239
Query: 125 QIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAV 184
I R ++ E P F+ LG + PY E
Sbjct: 240 TI------SRTEKQVVVEGQEP---ANFWMALGGKA-------PYANTKRLQEENLVITP 283
Query: 185 KLYKISDASGNVKSELIEQIP-LAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGL 243
+L++ S+ +G L +IP Q L + D F+LD V ++ WIGK + EK
Sbjct: 284 RLFECSNKTGRF---LATEIPDFNQDDLEEDDVFLLD-VWDQVFFWIGKHANEEEKKAAA 339
Query: 244 KRGQAFL 250
Q +L
Sbjct: 340 TTAQEYL 346
>pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2
Length = 107
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 185 KLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLK 244
+L++ S+ +G + E + Q L++ D ++LDT I+ WIGK + +EK +
Sbjct: 2 RLFECSNKTGRFLA--TEIVDFTQDDLDENDVYLLDTWDQ-IFFWIGKGANESEKEAAAE 58
Query: 245 RGQAFLTNN 253
Q +L ++
Sbjct: 59 TAQEYLRSH 67
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 42 TGIRYLPGGVASGFNHVD 59
+G++Y GGVASGF HV+
Sbjct: 112 SGLKYKKGGVASGFKHVE 129
>pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
Length = 136
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 42 TGIRYLPGGVASGFNHVDIN 61
+G++Y GGVASGF HV N
Sbjct: 112 SGLKYKKGGVASGFKHVVPN 131
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 50 GVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVA 83
GVA D+ P K L+QI+ ++ ++++QVA
Sbjct: 117 GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVA 150
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 50 GVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVA 83
GVA D+ P K L+QI+ ++ ++++QVA
Sbjct: 117 GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVA 150
>pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|G Chain G, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 150
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 42 TGIRYLPGGVASGFNHV 58
+G++Y GGVASGF HV
Sbjct: 134 SGLKYKKGGVASGFKHV 150
>pdb|2IHO|A Chain A, Crystal Structure Of Moa, A Lectin From The Mushroom
Marasmius Oreades In Complex With The Trisaccharide
Gal(1,3)gal(1,4)glcnac
Length = 293
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 202 EQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTN 252
Q+ LA+ N DTF L + SG Y+ + S+ A +G AF TN
Sbjct: 45 HQLWLAEPIPNVADTFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTN 95
>pdb|3EF2|A Chain A, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|B Chain B, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|C Chain C, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium.
pdb|3EF2|D Chain D, Structure Of The Marasmius Oreades Mushroom Lectin (Moa)
In Complex With Galalpha(1,3)[fucalpha(1,2)]gal And
Calcium
Length = 293
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 202 EQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTN 252
Q+ LA+ N DTF L + SG Y+ + S+ A +G AF TN
Sbjct: 45 HQLWLAEPIPNVADTFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTN 95
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 196 VKSELIEQIPLAQKSL--NQGDTFILDTVTSGIYVWIGKDSTTAE 238
++SEL +IP A+K+L N + + T G+ +WIGK + A+
Sbjct: 20 IESELTNEIP-AEKALQSNHFELSLRTEATQGLVLWIGKAAERAD 63
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 6 RMSLTTAVSDEEDVESAHISPYRAKQTGTAAASFNCTGIRYLPGG------VASGFNHVD 59
R L +A D+E +++ + G + S N + L GG V+ D
Sbjct: 86 RQVLGSATRDQEQLQAW-------ESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGXYD 138
Query: 60 INAPGEKKLYQIKGKKNIRVRQVA 83
+ P K L+QI+ ++ ++++Q+A
Sbjct: 139 VGLPSHKTLFQIQAERILKLQQLA 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,181,255
Number of Sequences: 62578
Number of extensions: 331163
Number of successful extensions: 694
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 44
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)