Query psy8088
Match_columns 282
No_of_seqs 156 out of 1152
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:08:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443|consensus 100.0 6.6E-67 1.4E-71 497.1 25.7 268 4-278 78-349 (827)
2 KOG0443|consensus 100.0 1.4E-48 3E-53 372.1 23.6 248 5-277 459-713 (827)
3 KOG0444|consensus 100.0 5.5E-41 1.2E-45 314.3 13.8 260 8-278 564-830 (1255)
4 KOG0445|consensus 100.0 3.6E-29 7.9E-34 234.5 11.6 212 62-278 220-451 (919)
5 KOG0445|consensus 100.0 6.9E-28 1.5E-32 225.9 14.1 223 3-277 595-830 (919)
6 KOG0444|consensus 99.9 7.5E-23 1.6E-27 192.9 3.3 239 15-278 992-1245(1255)
7 smart00262 GEL Gelsolin homolo 99.8 4.2E-20 9.2E-25 137.4 10.7 87 68-157 2-88 (90)
8 smart00262 GEL Gelsolin homolo 99.8 1.5E-18 3.3E-23 129.0 11.4 86 186-277 2-87 (90)
9 PF00626 Gelsolin: Gelsolin re 99.6 3.7E-16 8E-21 112.2 7.3 75 76-153 2-76 (76)
10 PF00626 Gelsolin: Gelsolin re 99.6 6.6E-16 1.4E-20 110.9 5.8 68 205-274 9-76 (76)
11 KOG1984|consensus 96.2 0.022 4.8E-07 57.1 8.8 66 205-272 882-973 (1007)
12 COG5028 Vesicle coat complex C 96.2 0.014 2.9E-07 57.9 6.9 66 205-271 737-828 (861)
13 PTZ00395 Sec24-related protein 96.2 0.027 5.9E-07 59.2 9.2 33 205-238 1435-1467(1560)
14 COG5028 Vesicle coat complex C 94.9 0.062 1.3E-06 53.4 6.3 41 77-117 731-771 (861)
15 KOG1984|consensus 94.7 0.035 7.5E-07 55.8 4.2 38 79-116 878-915 (1007)
16 KOG1985|consensus 92.6 0.086 1.9E-06 52.8 2.7 31 205-236 764-794 (887)
17 PTZ00395 Sec24-related protein 92.6 0.12 2.5E-06 54.7 3.7 34 81-114 1433-1466(1560)
18 PLN00162 transport protein sec 89.6 1.8 3.8E-05 44.4 8.8 84 181-273 618-717 (761)
19 PLN00162 transport protein sec 81.1 9.4 0.0002 39.2 9.2 89 64-157 619-723 (761)
20 KOG1985|consensus 80.8 1.2 2.7E-05 44.9 2.7 35 81-115 762-796 (887)
21 COG5014 Predicted Fe-S oxidore 34.8 72 0.0016 26.6 4.3 76 64-157 90-165 (228)
22 TIGR01440 conserved hypothetic 27.6 96 0.0021 25.5 3.9 48 205-252 10-58 (172)
23 PF03736 EPTP: EPTP domain; I 26.5 66 0.0014 19.8 2.3 17 92-108 24-44 (44)
24 PRK13690 hypothetical protein; 24.5 1.1E+02 0.0025 25.4 3.8 49 205-253 17-66 (184)
25 COG0161 BioA Adenosylmethionin 20.1 2.1E+02 0.0046 27.5 5.2 41 215-268 107-147 (449)
No 1
>KOG0443|consensus
Probab=100.00 E-value=6.6e-67 Score=497.12 Aligned_cols=268 Identities=30% Similarity=0.496 Sum_probs=241.8
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ 81 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e 81 (282)
...+|..|++||+ .|||.||||||+|| |+.||+|||.||+|.+||++|||+||+++.+ ..|||||||+++++++|
T Consensus 78 ~g~aAiktveLD~--~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~-~~rL~~~KGkr~vr~~e 154 (827)
T KOG0443|consen 78 AGAAAIKTVELDD--YLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEY-QVRLFHCKGKRNVRVKE 154 (827)
T ss_pred hcceeeeeEehhh--hhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccce-eeEEEEEccceeEEEEE
Confidence 4567799999999 89999999999999 9999999999999999999999999999874 45999999999999999
Q ss_pred eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCC--CCCcchhHHHHHhCCC
Q psy8088 82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDEN--SSPVEVTRFFTELGSG 159 (282)
Q Consensus 82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~--~~g~E~~~F~~~lg~g 159 (282)
||++|+|||++||||||+++.||+|+|++||..||++|+++|+.|++.+|.|+|+|.+||++ ....+..+||..++ |
T Consensus 155 V~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~-g 233 (827)
T KOG0443|consen 155 VPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVL-G 233 (827)
T ss_pred EEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhc-C
Confidence 99999999999999999999999999999999999999999999999999999999999863 23445678999988 4
Q ss_pred CCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHH
Q psy8088 160 SNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK 239 (282)
Q Consensus 160 ~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er 239 (282)
..+.++.....++ .++.....++||+|++++|.+.+.+++.+||+|++|++++|||||||+.+||||+|+.|+..||
T Consensus 234 ~~~~~~~~~~~~~---~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ER 310 (827)
T KOG0443|consen 234 FAPALPKKSPDDD---DEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDER 310 (827)
T ss_pred cCccCCCCCcchh---hhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHH
Confidence 4432333322222 2444566899999999999999999998899999999999999999967999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 240 VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 240 ~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+.||..|.+||++++||.+|.|++|.||.||+.||..|.
T Consensus 311 kaAm~~AeeFlk~k~yP~~TqV~rv~EG~Esa~FKq~F~ 349 (827)
T KOG0443|consen 311 KAAMSSAEEFLKKKKYPPNTQVVRVLEGAESAPFKQLFD 349 (827)
T ss_pred HHHHHHHHHHHHhccCCCCceEEEecCCCcchhHHHHHh
Confidence 999999999999999999999999999999999999875
No 2
>KOG0443|consensus
Probab=100.00 E-value=1.4e-48 Score=372.06 Aligned_cols=248 Identities=23% Similarity=0.314 Sum_probs=215.5
Q ss_pred hhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeC--ccEEEE
Q psy8088 5 DRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGK--KNIRVR 80 (282)
Q Consensus 5 ~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~--~~~~~~ 80 (282)
.|++-++..+|. .++|.|+|.|..|| |+||+++|+++|+|.+||.+. +.+..+...++||||.|. .++++.
T Consensus 459 ~~a~~~A~~l~~--s~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~---~g~~~~~~~t~LFqV~Gt~~~n~kAv 533 (827)
T KOG0443|consen 459 AAAISLAKALVE--SLKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSE---EGNTYPAPSTRLFQVQGTGPSNTKAV 533 (827)
T ss_pred HHHHHHHHHHhh--hcCCceeEEEeecCCCChHHHHhhCCceEEEecCcCC---CCCccCCCceEEEEEeccCcccceeE
Confidence 344467777888 57999999999999 999999999999999999763 344445567999999998 689999
Q ss_pred EeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCC
Q psy8088 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGS 160 (282)
Q Consensus 81 eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~ 160 (282)
||+...+||||.|||||.+++.+|+|+|+.||..+|.+|..++..|++ ++...+.| |.||++||.+|| |+
T Consensus 534 eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~~------~~~~~v~E---G~Ep~~FWe~LG-Gk 603 (827)
T KOG0443|consen 534 EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLKR------CQSTAVKE---GSEPDEFWELLG-GK 603 (827)
T ss_pred eeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHhc------CChhhhhc---CCCchhhHHHcC-CC
Confidence 999999999999999999999999999999999999999999998863 34445667 999999999999 88
Q ss_pred CCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHH
Q psy8088 161 NNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKV 240 (282)
Q Consensus 161 ~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~ 240 (282)
..|..... .+......||||.|+...|.+.++||. .|+|+||.++++|||||+ ++||||+|+.+++.+|.
T Consensus 604 ~~Y~~sk~-------~~~~~~~~PrLF~Cs~~~g~f~~~EI~--~F~QdDL~tdDi~lLDt~-~evfvWvG~~a~~~eK~ 673 (827)
T KOG0443|consen 604 AEYPSSKR-------LEEKPERDPRLFSCSNKTGSFVVEEIY--NFTQDDLMTDDIMLLDTW-SEVFVWVGQEANEKEKE 673 (827)
T ss_pred CCCCcCcc-------ccccCCCCCcEEEEEecCCcEEEEEec--CcchhhccccceEEEecC-ceEEEEecCCCChhHHH
Confidence 87743321 111234467999999999999999998 899999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHcC---CCCCcceEEEecCCCCChhhhhhh
Q psy8088 241 EGLKRGQAFLTNN---NYPAWTKTGEIKTSLEVWAEEKEE 277 (282)
Q Consensus 241 ~a~~~A~~~~~~~---~~~~~~~i~~v~eG~Ep~~F~~~~ 277 (282)
.|+..|+.|++.. +|...|||.+|.||+||+.|+.=|
T Consensus 674 ~Al~~~~~yl~~~~p~gr~~~TPI~vV~qG~EPp~Ftg~F 713 (827)
T KOG0443|consen 674 EALTIGQKYLETDLPEGRDPRTPIYVVKQGHEPPFFTGFF 713 (827)
T ss_pred HHHHHHHHHHhccCcccCCCCCceEEecCCCCCChhhccc
Confidence 9999999999776 555679999999999999998654
No 3
>KOG0444|consensus
Probab=100.00 E-value=5.5e-41 Score=314.33 Aligned_cols=260 Identities=23% Similarity=0.324 Sum_probs=228.1
Q ss_pred hheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCc-cCCCCeeecCCCCCcceEEEEEeC-ccEEEEEee
Q psy8088 8 SLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGG-VASGFNHVDINAPGEKKLYQIKGK-KNIRVRQVA 83 (282)
Q Consensus 8 ~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg-~~s~f~~~~~~~~~~~rL~~v~G~-~~~~~~eV~ 83 (282)
|+-+|-+.. .+|..|...||.|| |.+||++|+..|+|.+|| .+|||-.++.. ...+|||++.+. ..+.+.+||
T Consensus 564 AiHAVnLRN--~LgA~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~-~h~TRlYrv~~~g~~i~lEPVp 640 (1255)
T KOG0444|consen 564 AIHAVNLRN--HLGATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKP-AHLTRLYRVGVNGTAIELEPVP 640 (1255)
T ss_pred HHHhhhhhh--hhCchhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecch-HHhhhhheeccccceeEeeccC
Confidence 455666777 57999999999999 999999999999999999 77999888754 478999999998 689999999
Q ss_pred cccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCCCC
Q psy8088 84 LSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQ 163 (282)
Q Consensus 84 ~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~~~ 163 (282)
++..||....||+||.|.+||+|.|-+|...--.||+.+|.+|...+|.|+++|....+ |.|+++||++|| |.+..
T Consensus 641 l~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQ---g~e~pEFWqaLg-g~p~e 716 (1255)
T KOG0444|consen 641 LSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQ---GREPPEFWQALG-GNPDE 716 (1255)
T ss_pred ccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhh---cCCCHHHHHHhC-CCCcc
Confidence 99999999999999999999999999999999999999999999899999999999888 999999999999 55432
Q ss_pred CCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEee---cccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHH
Q psy8088 164 VADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIE---QIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKV 240 (282)
Q Consensus 164 ~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~---~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~ 240 (282)
..........+.| .+.+++||+|.-.-|.+.+-+|. .+.+.|++|+|..||||||. +.||+|+|++++.-.|.
T Consensus 717 ~~~~ikeHVPEdf---~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~-sDiF~W~GkKs~RLvra 792 (1255)
T KOG0444|consen 717 PQGAIKEHVPEDF---VPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCN-SDIFLWIGKKSNRLVRA 792 (1255)
T ss_pred cccchhhcCCccc---CCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecC-CceEEEecccchHHHHH
Confidence 1100000111122 45689999999888998887763 34789999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 241 EGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 241 ~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+|.++..++.+...||+.+.+.++.||.|...|+.|||
T Consensus 793 Aa~KL~~EL~~M~dRPdyA~V~R~~EG~E~q~FrsKFa 830 (1255)
T KOG0444|consen 793 AAQKLVVELHQMIDRPDYAQVYRETEGEESQMFRSKFA 830 (1255)
T ss_pred HHHHHHHHHHhhhcCcchhheeeccCccHHHHHHHhhC
Confidence 99999999999999999999999999999999999997
No 4
>KOG0445|consensus
Probab=99.96 E-value=3.6e-29 Score=234.49 Aligned_cols=212 Identities=24% Similarity=0.350 Sum_probs=173.7
Q ss_pred CCCcceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhc-cccCCCcce-EEE
Q psy8088 62 APGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIR-DQDHNGRAT-VSI 139 (282)
Q Consensus 62 ~~~~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~-~~e~~g~~~-v~~ 139 (282)
++...+|+||+|++++..+.|++..+|||++|||||..++.+|.|.|..+|..|+.+|-+++..|. +++.+|+++ +++
T Consensus 220 Pyk~vMLlqVkGr~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~ivt 299 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYIVT 299 (919)
T ss_pred CCCceEEEEEcccccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEEEE
Confidence 456889999999999999999999999999999999999999999999999999999999999885 346678775 445
Q ss_pred ecCCC-CCcchhHHHHHhCCCCCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEE
Q psy8088 140 IDENS-SPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFI 218 (282)
Q Consensus 140 v~e~~-~g~E~~~F~~~lg~g~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfI 218 (282)
|.+.. .-.....||+.|| +...+ ......++|+.|+........+|++.+..-.-.-.-. ..++.++|.+..|.|
T Consensus 300 it~~~~~t~~~~~Fw~llg-~qs~~-~~~g~a~ede~fE~~iietN~iyr~~dd~l~p~~~~w--~ipk~~~l~p~eVLv 375 (919)
T KOG0445|consen 300 ITEINTHTHAAKDFWKLLG-GQSSY-QSAGDAKEDELFEAAIIETNCIYRLMDDKLVPDDDYW--KIPKCSLLQPKEVLV 375 (919)
T ss_pred EeccchhHHHHHHHHHHhC-Cccch-hhcCCccccchHHHHHHHhhhHHhhcccccCcccccc--ccccccccCcceEEE
Confidence 65511 1122468999999 66554 2233345678888777777889999875311110111 268999999999999
Q ss_pred EecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHc-----------------CCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 219 LDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTN-----------------NNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 219 LD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~-----------------~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+|.| ++||||.|+.++...|+.|+.+|++.++. .+||.|+....+.||.|+.+|++||.
T Consensus 376 FDFG-SEvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFs 451 (919)
T KOG0445|consen 376 FDFG-SEVYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFS 451 (919)
T ss_pred EecC-ceEEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhc
Confidence 9999 89999999999999999999999999863 47899999999999999999999985
No 5
>KOG0445|consensus
Probab=99.95 E-value=6.9e-28 Score=225.95 Aligned_cols=223 Identities=19% Similarity=0.310 Sum_probs=184.5
Q ss_pred chhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeC--ccEE
Q psy8088 3 DDDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGK--KNIR 78 (282)
Q Consensus 3 ~~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~--~~~~ 78 (282)
.-+..||||+++|.|. | .|+|+.|| |++||++|.|+|.++.|-.+. ..-|||+|.|. ....
T Consensus 595 ekG~~AL~tvElD~e~---g--aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr~E~----------~~erlY~v~G~vs~Et~ 659 (919)
T KOG0445|consen 595 EKGTSALMTVELDEER---G--AQVRVLQGKEPPCFLQLFQGGMVVHSGRREE----------EEERLYCVRGEVSVETN 659 (919)
T ss_pred cccceeeeeeeecccc---C--ceeEeecCCCccHHHHHhcCCeeEEcCchhh----------chhheeeEecccccchh
Confidence 4467899999999964 4 69999999 999999999999999986541 34579999998 5677
Q ss_pred EEEeecccccCCCCCeEEEecCC--eEEEEeCCCCCHHHHHHHHHHHHHhccccC--CCcceEEEecCCCCCcchhHHHH
Q psy8088 79 VRQVALSVGSMNKGDCFALDTGR--EVLVYVGSKAARTERLKAISVANQIRDQDH--NGRATVSIIDENSSPVEVTRFFT 154 (282)
Q Consensus 79 ~~eV~~~~~sL~s~d~fIld~~~--~iyvW~G~~ss~~er~~A~~~a~~l~~~e~--~g~~~v~~v~e~~~g~E~~~F~~ 154 (282)
+.||.+..++|.|.-.||+..++ .+|+|+|.++-...|..+...|+.|+.... .+++.++.|++ |.++..||+
T Consensus 660 l~Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Evee---gs~~~~~~~ 736 (919)
T KOG0445|consen 660 LLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEE---GSEPLGFWD 736 (919)
T ss_pred hhHhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecC---CCCchhhhh
Confidence 88999999999999999998775 799999999999999999999999875433 34567778888 999999999
Q ss_pred HhCCCCCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEee-----cccCCccccCCCCEEEEecCCCeEEEE
Q psy8088 155 ELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIE-----QIPLAQKSLNQGDTFILDTVTSGIYVW 229 (282)
Q Consensus 155 ~lg~g~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~-----~~~~~q~~L~s~~vfILD~g~~~iyvW 229 (282)
+||. +. ....+|||-++.+. +.++. ..||+|++|.+- |+||.| +++|+|
T Consensus 737 alGr-kd------------------f~~~~RlF~~sS~q----a~els~p~rc~~pFsQ~~Ly~a--fLvD~g-delwLW 790 (919)
T KOG0445|consen 737 ALGR-KD------------------FNFAPRLFILSSSQ----ATELSYPARCPMPFSQEDLYSA--FLVDNG-DELWLW 790 (919)
T ss_pred hccc-cc------------------ccccceeeeccchh----hhhccCcccCCCcccHHHHhhh--eeeccC-CeeEee
Confidence 9993 22 13468999887643 22222 138999999964 999999 999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhh
Q psy8088 230 IGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEE 277 (282)
Q Consensus 230 ~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~ 277 (282)
. ...+|+.|+++|.+||+... .|-.+|..|.||..|+.-|
T Consensus 791 ~----w~s~r~~Aleta~~Ywk~~~----~p~~vV~aGlEPl~Fk~lF 830 (919)
T KOG0445|consen 791 Q----WASDRKSALETALQYWKNLK----APSYVVHAGLEPLTFKNLF 830 (919)
T ss_pred h----hhhHHHHHHHHHHHHHhccC----CCceEEEcCcChhhhhhhC
Confidence 8 58899999999999999543 4589999999999999754
No 6
>KOG0444|consensus
Probab=99.86 E-value=7.5e-23 Score=192.91 Aligned_cols=239 Identities=18% Similarity=0.201 Sum_probs=188.9
Q ss_pred ccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeC---ccEEEEEeecccccC
Q psy8088 15 DEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGK---KNIRVRQVALSVGSM 89 (282)
Q Consensus 15 d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~---~~~~~~eV~~~~~sL 89 (282)
-.|.+.+++.-.+|..|. ...|++.|+.+++|+.|.... |.. .-...+.|||++.. -..++.||.+....|
T Consensus 992 kFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~---~~~-~G~~~pelfq~R~NGsalctR~IQin~da~~L 1067 (1255)
T KOG0444|consen 992 KFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL---TKN-LGGKWPELFQMRANGSALCTRTIQINCDANQL 1067 (1255)
T ss_pred hHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch---hhh-hcCCCchheeeecCCccceeeeEEecCcHHHH
Confidence 345678899999999998 899999999999999998652 111 12356889999965 367899999999999
Q ss_pred CCCCeEEEec-------CCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCCC
Q psy8088 90 NKGDCFALDT-------GREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNN 162 (282)
Q Consensus 90 ~s~d~fIld~-------~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~~ 162 (282)
||..||||.. +..+|+|.|+.|++.++..|.++.....+. ...++.+.+ |+|+..||..+| ++..
T Consensus 1068 nS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~~~~d~----~~~~~~~~e---gee~e~fw~~~g-~~k~ 1139 (1255)
T KOG0444|consen 1068 NSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVVRDDDN----DFRIVEVQE---GEENEEFWKVLG-GKKK 1139 (1255)
T ss_pred hhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcCccccc----hhhhhccCC---ccchHHHhcccC-CCCc
Confidence 9999999964 347899999999999998886665544332 233445666 888889999999 6654
Q ss_pred CCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHH
Q psy8088 163 QVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEG 242 (282)
Q Consensus 163 ~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a 242 (282)
|. .|..+ ....|||+|+..+|.+.+.+-.. .|+|+||..++++|+|.| ..||.|+|..++..+-+.+
T Consensus 1140 ye-------~d~~~----~khtrlfrc~nekgyfa~sek~~-DfcqDDl~dddim~ldng-~~v~~w~g~~~s~ie~Kls 1206 (1255)
T KOG0444|consen 1140 YE-------TDSSF----VKHTRLFRCTNEKGYFAISEKTV-DFCQDDLDDDDIMILDNG-DAVFLWIGARSSDIEAKLS 1206 (1255)
T ss_pred cc-------hhHHH----HHHHHHHhccchhhhhhHhHhhh-hhhhccchhhhhhhhccc-ceeeeeecceehhHHHHHH
Confidence 42 22222 34679999999999988766543 899999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHcCCCC---CcceEEEecCCCCChhhhhhhh
Q psy8088 243 LKRGQAFLTNNNYP---AWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 243 ~~~A~~~~~~~~~~---~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
...|+.|...++.. ....+..+..|.|+..|++=|+
T Consensus 1207 ~~a~Qvy~~~mr~k~~e~pr~~~l~~~gre~~~F~~cfh 1245 (1255)
T KOG0444|consen 1207 YQAAQVYHASMRMKANEKPRKFMLAVRGRESCRFRKCFH 1245 (1255)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHhcchhhhhHHHHH
Confidence 99999998765321 2234566789999999998765
No 7
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.83 E-value=4.2e-20 Score=137.44 Aligned_cols=87 Identities=41% Similarity=0.732 Sum_probs=80.8
Q ss_pred EEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCc
Q psy8088 68 LYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPV 147 (282)
Q Consensus 68 L~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~ 147 (282)
+++++|...+.+.++|+++++|+++||||||++..||+|+|++|++.+|.+|+.+|+.+.+..+.+.+++.+|+| |.
T Consensus 2 ~~~~~g~~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~e---g~ 78 (90)
T smart00262 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDE---GK 78 (90)
T ss_pred eEEEeCCceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeC---CC
Confidence 688999989999999999999999999999999999999999999999999999999998655555678989989 99
Q ss_pred chhHHHHHhC
Q psy8088 148 EVTRFFTELG 157 (282)
Q Consensus 148 E~~~F~~~lg 157 (282)
|+..||..||
T Consensus 79 E~~~F~~~f~ 88 (90)
T smart00262 79 EPPEFWSLFG 88 (90)
T ss_pred CCHHHHHHhC
Confidence 9999999998
No 8
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.79 E-value=1.5e-18 Score=129.05 Aligned_cols=86 Identities=30% Similarity=0.385 Sum_probs=73.3
Q ss_pred EEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEec
Q psy8088 186 LYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIK 265 (282)
Q Consensus 186 Ly~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~ 265 (282)
++++.+. ..+.+.++ ++++++|++++|||||++ ++||||+|++|+..+|..|+.+|+.|++..+ +.++++.++.
T Consensus 2 ~~~~~g~-~~~~~~~~---~~~~~~L~s~d~fild~~-~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~-~~~~~i~~v~ 75 (90)
T smart00262 2 LVRVKGK-RNVRVPEV---PFSQGSLNSGDCYILDTG-SEIYVWVGKKSSQDEKKKAAELAVELDDTLG-PGPVQVRVVD 75 (90)
T ss_pred eEEEeCC-ceEEEEEc---CCCHHHCCCCCEEEEECC-CEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCCceEEEEe
Confidence 3445442 23444444 899999999999999999 8999999999999999999999999998766 5689999999
Q ss_pred CCCCChhhhhhh
Q psy8088 266 TSLEVWAEEKEE 277 (282)
Q Consensus 266 eG~Ep~~F~~~~ 277 (282)
||.||..|+..+
T Consensus 76 eg~E~~~F~~~f 87 (90)
T smart00262 76 EGKEPPEFWSLF 87 (90)
T ss_pred CCCCCHHHHHHh
Confidence 999999999865
No 9
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.65 E-value=3.7e-16 Score=112.22 Aligned_cols=75 Identities=32% Similarity=0.520 Sum_probs=68.3
Q ss_pred cEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHH
Q psy8088 76 NIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFF 153 (282)
Q Consensus 76 ~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~ 153 (282)
.+++.++++++++|+++||||||++..||+|+|++|+..+|.+|..+|+.+...++.+.+.+.++.+ |.|+..||
T Consensus 2 ~~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~e---g~E~~~F~ 76 (76)
T PF00626_consen 2 FVRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEE---GKEPAEFL 76 (76)
T ss_dssp TEEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEET---THHHHHHH
T ss_pred CccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecC---CCCChHHC
Confidence 3567788999999999999999999999999999999999999999999998445677789988889 99999997
No 10
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.62 E-value=6.6e-16 Score=110.90 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=62.5
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhh
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEE 274 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~ 274 (282)
++++++|++++|||||++ ..||+|+|++++..+|..|+..|+++. ...++.++.+.++.||.||..|.
T Consensus 9 ~~s~~~L~s~~~yIld~~-~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 9 PLSQSSLNSDDCYILDCG-YEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp SSSGGGEETTSEEEEEES-SEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCCHHHcCCCCEEEEEeC-CCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCCCChHHC
Confidence 899999999999999999 899999999999999999999999988 33445678999999999999994
No 11
>KOG1984|consensus
Probab=96.25 E-value=0.022 Score=57.15 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=51.1
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHH--------------------------HHHHHHHHHHHcCCCCCc
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKV--------------------------EGLKRGQAFLTNNNYPAW 258 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~--------------------------~a~~~A~~~~~~~~~~~~ 258 (282)
+++.+-|..++||+||.| ..+|+|+|..++..... ..+.-+..+|+. -|+..
T Consensus 882 raS~e~l~negiYll~nG-~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~-~r~~~ 959 (1007)
T KOG1984|consen 882 RASSEFLSNEGIYLLDNG-QKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR-QRSSE 959 (1007)
T ss_pred ecchhhccCCceEEEecC-cEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh-ccccc
Confidence 789999999999999999 89999999988754322 233444566666 55667
Q ss_pred ceEEEecCCCCChh
Q psy8088 259 TKTGEIKTSLEVWA 272 (282)
Q Consensus 259 ~~i~~v~eG~Ep~~ 272 (282)
.++..+.+|.++..
T Consensus 960 l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 960 LPVVLVKQGLDGSE 973 (1007)
T ss_pred cccEEEecCCCchh
Confidence 88899999888874
No 12
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.014 Score=57.87 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=48.1
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHH-----------------------HHHHH---HcCCCCCc
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKR-----------------------GQAFL---TNNNYPAW 258 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~-----------------------A~~~~---~~~~~~~~ 258 (282)
+++.+.|.+.++|+||+| .+||+|+|+++.+......+.. +...| +...+...
T Consensus 737 NaT~s~le~~GlYLidtg-~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~t 815 (861)
T COG5028 737 NATSSLLESGGLYLIDTG-QKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDST 815 (861)
T ss_pred hhhHHHHhcCCeEEEEcC-CEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCc
Confidence 689999999999999999 8999999999987665443332 22222 22233334
Q ss_pred ceEEEecCCCCCh
Q psy8088 259 TKTGEIKTSLEVW 271 (282)
Q Consensus 259 ~~i~~v~eG~Ep~ 271 (282)
.++..|.+|.+|.
T Consensus 816 l~lvlVR~~~d~s 828 (861)
T COG5028 816 LPLVLVRGGGDPS 828 (861)
T ss_pred cceEEEecCCCcc
Confidence 5688899998887
No 13
>PTZ00395 Sec24-related protein; Provisional
Probab=96.15 E-value=0.027 Score=59.17 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=30.1
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCHHH
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAE 238 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~e 238 (282)
+++.+-|.++.+||||.| ..||+|+|+.+++..
T Consensus 1435 rLS~ErLesdGIYLLDNG-e~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1435 PSSAEKIYSNGIYLLDAC-THFYLYFGFHSDANF 1467 (1560)
T ss_pred cchHHHhcCCcEEEEECC-CEEEEEECCCCCHHH
Confidence 788899999999999999 899999999997654
No 14
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=94.87 E-value=0.062 Score=53.40 Aligned_cols=41 Identities=15% Similarity=0.376 Sum_probs=34.7
Q ss_pred EEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHH
Q psy8088 77 IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERL 117 (282)
Q Consensus 77 ~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~ 117 (282)
+....+.++.+.|+++.+|+||+|.+||+|.|+.+++.=..
T Consensus 731 ~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~ 771 (861)
T COG5028 731 VLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQ 771 (861)
T ss_pred ccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHH
Confidence 44445567889999999999999999999999999986554
No 15
>KOG1984|consensus
Probab=94.72 E-value=0.035 Score=55.78 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=33.4
Q ss_pred EEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHH
Q psy8088 79 VRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTER 116 (282)
Q Consensus 79 ~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er 116 (282)
..-|.++.++|+.++||+|++|.++|+|.|..++..-.
T Consensus 878 p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~ll 915 (1007)
T KOG1984|consen 878 PKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLL 915 (1007)
T ss_pred ccceecchhhccCCceEEEecCcEEEEEecCCCCHHHH
Confidence 34478899999999999999999999999999987544
No 16
>KOG1985|consensus
Probab=92.60 E-value=0.086 Score=52.80 Aligned_cols=31 Identities=19% Similarity=0.634 Sum_probs=28.4
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCH
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~ 236 (282)
+++-+.|++...|++|+| ..+|+|+|++|.+
T Consensus 764 ~ltae~l~~~GlyL~D~g-~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTG-TTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecC-cEEEEEEcCCCCc
Confidence 688899999999999999 8999999999863
No 17
>PTZ00395 Sec24-related protein; Provisional
Probab=92.58 E-value=0.12 Score=54.69 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=31.0
Q ss_pred EeecccccCCCCCeEEEecCCeEEEEeCCCCCHH
Q psy8088 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAART 114 (282)
Q Consensus 81 eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~ 114 (282)
.++++...|.++.+|||++|..||+|.|+.+++.
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~Pq 1466 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDAN 1466 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHH
Confidence 4578889999999999999999999999999874
No 18
>PLN00162 transport protein sec23; Provisional
Probab=89.59 E-value=1.8 Score=44.37 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=53.7
Q ss_pred cccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCC----------------HHHHHHHHH
Q psy8088 181 DKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDST----------------TAEKVEGLK 244 (282)
Q Consensus 181 ~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as----------------~~er~~a~~ 244 (282)
.-.|+||..+.. +. -+.| .++.+.|.++.+||||++ ..|+||.|.... ++.-.....
T Consensus 618 mI~P~L~sy~~~-~~--P~pv---~Ld~~si~~d~ilLLD~~-f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~ 690 (761)
T PLN00162 618 MIQPTLISYSFN-GP--PEPV---LLDVASIAADRILLLDSY-FSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQA 690 (761)
T ss_pred hhCCeEEEecCC-CC--Ccce---ecchhhccCCceEEEeCC-CEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHH
Confidence 447899988753 22 2244 588888999999999999 899999996431 112234555
Q ss_pred HHHHHHHcCCCCCcceEEEecCCCCChhh
Q psy8088 245 RGQAFLTNNNYPAWTKTGEIKTSLEVWAE 273 (282)
Q Consensus 245 ~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F 273 (282)
-|+++++.+ .| -..+....+|.--+.|
T Consensus 691 ~a~~~~~~R-fp-~Pr~i~~~~~~SqaRf 717 (761)
T PLN00162 691 DAQAIIKER-FP-VPRLVVCDQHGSQARF 717 (761)
T ss_pred HHHHHHhcC-CC-CCeEEEeCCCCcHHHH
Confidence 666655432 22 2345666666655554
No 19
>PLN00162 transport protein sec23; Provisional
Probab=81.06 E-value=9.4 Score=39.20 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=56.0
Q ss_pred CcceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCC-----------HHH-----HHHHHHHHHHhc
Q psy8088 64 GEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAA-----------RTE-----RLKAISVANQIR 127 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss-----------~~e-----r~~A~~~a~~l~ 127 (282)
-.|+||.+.=.. ....|.++..||.++.+|+||++-.|++|.|.... ..+ -....+.|+.|.
T Consensus 619 I~P~L~sy~~~~--~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~ 696 (761)
T PLN00162 619 IQPTLISYSFNG--PPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAII 696 (761)
T ss_pred hCCeEEEecCCC--CCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHH
Confidence 357888765221 13357889999999999999999999999995322 222 123445666664
Q ss_pred cccCCCcceEEEecCCCCCcchhHHHHHhC
Q psy8088 128 DQDHNGRATVSIIDENSSPVEVTRFFTELG 157 (282)
Q Consensus 128 ~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg 157 (282)
. +|--.+.++..+++ |....-+..-|.
T Consensus 697 ~-~Rfp~Pr~i~~~~~--~SqaRfl~~kln 723 (761)
T PLN00162 697 K-ERFPVPRLVVCDQH--GSQARFLLAKLN 723 (761)
T ss_pred h-cCCCCCeEEEeCCC--CcHHHHHHHhcC
Confidence 3 33333567777773 333333455565
No 20
>KOG1985|consensus
Probab=80.84 E-value=1.2 Score=44.88 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=30.9
Q ss_pred EeecccccCCCCCeEEEecCCeEEEEeCCCCCHHH
Q psy8088 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAARTE 115 (282)
Q Consensus 81 eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~e 115 (282)
..+++...|.+...|++|+|..+|+|.|+.+.+.-
T Consensus 762 ~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~l 796 (887)
T KOG1985|consen 762 PLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSL 796 (887)
T ss_pred ccchHHHHhccCceEEEecCcEEEEEEcCCCCccc
Confidence 34677899999999999999999999999998754
No 21
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=34.80 E-value=72 Score=26.64 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=50.2
Q ss_pred CcceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCC
Q psy8088 64 GEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDEN 143 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~ 143 (282)
...-+++|.|...+.+.|--+..-.|.++..|||.++..++=.. |..+.+++.++. +-|.+---
T Consensus 90 ~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlETNG~~~g~d--------rslv~el~nr~n-------v~vRVsvK- 153 (228)
T COG5014 90 RGCDLVRISGAEPILGREHVLEVIELLVNNTFVLETNGLMFGFD--------RSLVDELVNRLN-------VLVRVSVK- 153 (228)
T ss_pred cCCcEEEeeCCCccccHHHHHHHHHhccCceEEEEeCCeEEecC--------HHHHHHHhcCCc-------eEEEEEec-
Confidence 35678999998777666644445556789999999998887432 555555554432 23322223
Q ss_pred CCCcchhHHHHHhC
Q psy8088 144 SSPVEVTRFFTELG 157 (282)
Q Consensus 144 ~~g~E~~~F~~~lg 157 (282)
|-+|+.|-++-|
T Consensus 154 --G~dpesF~kIT~ 165 (228)
T COG5014 154 --GWDPESFEKITG 165 (228)
T ss_pred --CCCHHHHHHHhc
Confidence 677888988877
No 22
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=27.57 E-value=96 Score=25.53 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=35.4
Q ss_pred cCCccccCCCCEEEEecCCCe-EEEEecCCCCHHHHHHHHHHHHHHHHc
Q psy8088 205 PLAQKSLNQGDTFILDTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTN 252 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~-iyvW~G~~as~~er~~a~~~A~~~~~~ 252 (282)
-+.+.-|.++++|+|-|-|+| +=-++|+.+|.+--+.-+..-.++.+.
T Consensus 10 l~~~a~l~~g~i~VvGcSTSEV~G~~IG~~ss~eva~~i~~~l~~~~~~ 58 (172)
T TIGR01440 10 LKDASNLKKGDLFVIGCSTSEVIGGKIGTNSSMEVAETIVNALDVVLKK 58 (172)
T ss_pred HHHhhCCCCCCEEEEecchHHhCCcccCCcChHHHHHHHHHHHHHHhhh
Confidence 356778999999999998555 568999999877666555555555544
No 23
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=26.54 E-value=66 Score=19.83 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=11.1
Q ss_pred CCeEEEec----CCeEEEEeC
Q psy8088 92 GDCFALDT----GREVLVYVG 108 (282)
Q Consensus 92 ~d~fIld~----~~~iyvW~G 108 (282)
++.|++.+ +..||.|.|
T Consensus 24 ~~~fl~~a~~~~~s~Iy~Wd~ 44 (44)
T PF03736_consen 24 GDQFLAVASFFGDSQIYRWDG 44 (44)
T ss_pred CEEEEEEEeCCCCCEEEEeCC
Confidence 45566543 357999986
No 24
>PRK13690 hypothetical protein; Provisional
Probab=24.55 E-value=1.1e+02 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=36.6
Q ss_pred cCCccccCCCCEEEEecCCCe-EEEEecCCCCHHHHHHHHHHHHHHHHcC
Q psy8088 205 PLAQKSLNQGDTFILDTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNN 253 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~-iyvW~G~~as~~er~~a~~~A~~~~~~~ 253 (282)
-+.+..|.++++|+|-|-++| +=-++|+.+|.+--+.-...-.++++..
T Consensus 17 l~~~a~l~~g~i~VvGcSTSEV~G~~IGt~ss~eva~~i~~~l~~~~~~~ 66 (184)
T PRK13690 17 LLEQANLKPGQIFVLGCSTSEVLGERIGTAGSLEVAEAIVEALLEVLKET 66 (184)
T ss_pred HHHhhCCCCCCEEEEecchHhhCCcccCCcChHHHHHHHHHHHHHHhhhc
Confidence 366778999999999998555 5679999998876666666555555543
No 25
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=20.05 E-value=2.1e+02 Score=27.54 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=32.1
Q ss_pred CEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCC
Q psy8088 215 DTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSL 268 (282)
Q Consensus 215 ~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~ 268 (282)
.||.-|.| .+.-..|++.|.+|++.++.|..+.+.....|.
T Consensus 107 ~vFf~~sG-------------SeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gY 147 (449)
T COG0161 107 HVFFTDSG-------------SEAVETALKMALQYWRARGQPQRKKFISRRNGY 147 (449)
T ss_pred EEEEeCCc-------------hHHHHHHHHHHHHHHHhcCCCcceEEEEeccCc
Confidence 78888888 345678999999999999999766666555553
Done!