Query psy8088
Match_columns 282
No_of_seqs 156 out of 1152
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:08:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j72_A Macrophage capping prot 100.0 9.4E-66 3.2E-70 471.7 29.0 267 4-278 74-344 (347)
2 1d0n_A Horse plasma gelsolin; 100.0 1.3E-63 4.3E-68 495.1 27.1 266 4-278 72-341 (729)
3 3fg6_A Adseverin, scinderin; C 100.0 3.8E-60 1.3E-64 436.6 25.0 251 4-278 106-364 (371)
4 3fg7_A Villin-1; actin binding 100.0 2E-61 6.9E-66 448.0 13.0 251 4-278 120-376 (398)
5 2fh1_A Gelsolin; calcium, cont 100.0 3.5E-58 1.2E-62 420.7 28.1 251 4-278 65-323 (344)
6 1d0n_A Horse plasma gelsolin; 100.0 9.2E-54 3.2E-58 424.5 23.4 251 5-278 451-708 (729)
7 1svq_A Severin; actin-binding; 100.0 5.5E-31 1.9E-35 203.4 10.3 105 53-163 1-107 (114)
8 1kcq_A Gelsolin, brevin, ADF, 100.0 1.3E-28 4.3E-33 187.2 13.1 95 65-163 2-96 (104)
9 2fh1_A Gelsolin; calcium, cont 100.0 5.3E-27 1.8E-31 214.2 19.8 187 64-275 7-205 (344)
10 1j72_A Macrophage capping prot 99.9 2E-26 6.9E-31 210.7 21.7 203 53-275 10-221 (347)
11 3fg6_A Adseverin, scinderin; C 99.9 5.8E-25 2E-29 202.2 20.6 187 65-275 53-247 (371)
12 3tu5_B Gelsolin, protein cordo 99.9 2.5E-26 8.7E-31 203.7 3.4 192 4-212 92-289 (297)
13 3fg7_A Villin-1; actin binding 99.9 1.2E-25 4.2E-30 208.1 0.0 187 66-275 64-260 (398)
14 1kcq_A Gelsolin, brevin, ADF, 99.8 2E-19 6.7E-24 136.4 12.2 87 183-275 2-88 (104)
15 1svq_A Severin; actin-binding; 99.7 6E-18 2.1E-22 130.2 9.4 87 182-275 11-99 (114)
16 1t44_G Chimera of gelsolin dom 99.4 4E-14 1.4E-18 113.0 2.8 57 4-62 74-132 (147)
17 2ff3_A Gelsolin; protein-prote 99.3 2.4E-13 8.3E-18 108.4 2.9 53 4-58 96-150 (150)
18 2vik_A Villin 14T; actin-bindi 99.3 3.9E-13 1.3E-17 104.6 1.5 51 4-56 74-126 (126)
19 3cip_G Gelsolin; actin, dictyo 99.3 6.4E-13 2.2E-17 103.7 2.5 50 4-55 77-128 (128)
20 3tu5_B Gelsolin, protein cordo 99.3 9E-12 3.1E-16 110.3 9.4 151 65-232 34-196 (297)
21 3cip_G Gelsolin; actin, dictyo 99.1 7.8E-10 2.7E-14 86.1 10.0 90 64-161 18-117 (128)
22 2ff3_A Gelsolin; protein-prote 99.1 3.3E-10 1.1E-14 90.3 8.0 90 64-161 37-136 (150)
23 2vik_A Villin 14T; actin-bindi 99.0 7.4E-10 2.5E-14 86.0 8.6 92 64-163 16-116 (126)
24 1t44_G Chimera of gelsolin dom 99.0 1.8E-09 6E-14 86.1 10.0 87 64-157 15-111 (147)
25 3eh2_A Protein transport prote 96.5 0.01 3.5E-07 59.0 10.2 85 182-272 619-731 (766)
26 3efo_B SEC24 related gene fami 95.9 0.036 1.2E-06 55.2 10.1 84 182-271 623-734 (770)
27 2nut_A Protein transport prote 94.7 0.077 2.6E-06 52.8 8.2 83 182-273 623-721 (769)
28 1m2o_A SEC23, protein transpor 94.2 0.1 3.6E-06 51.9 8.0 84 182-274 625-724 (768)
29 3eh2_A Protein transport prote 94.2 0.16 5.6E-06 50.4 9.2 77 65-142 620-726 (766)
30 3eh1_A Protein transport prote 93.9 0.052 1.8E-06 53.8 5.1 55 182-237 600-661 (751)
31 3efo_B SEC24 related gene fami 93.6 0.18 6.1E-06 50.2 8.3 77 65-142 624-730 (770)
32 3eh1_A Protein transport prote 93.4 0.25 8.5E-06 49.0 8.9 59 83-142 630-715 (751)
33 1pcx_A Protein transport prote 92.8 0.096 3.3E-06 52.4 4.9 32 205-237 672-703 (810)
34 2nut_A Protein transport prote 92.7 0.19 6.6E-06 50.0 6.9 88 65-157 624-727 (769)
35 1m2o_A SEC23, protein transpor 91.7 0.35 1.2E-05 48.1 7.5 46 65-112 626-671 (768)
36 1m2v_B SEC24, protein transpor 91.5 0.11 3.9E-06 52.6 3.7 31 205-236 788-818 (926)
37 1pcx_A Protein transport prote 90.7 0.2 6.8E-06 50.1 4.6 34 81-114 670-703 (810)
38 1m2v_B SEC24, protein transpor 89.3 0.22 7.5E-06 50.5 3.6 33 81-113 786-818 (926)
No 1
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=100.00 E-value=9.4e-66 Score=471.70 Aligned_cols=267 Identities=30% Similarity=0.446 Sum_probs=240.0
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ 81 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e 81 (282)
...+|++|+++|+ .+||+|+|+||+|| |++||+||+++|+|++||+++||+|++++....+|||||+|+++++++|
T Consensus 74 ~~~aa~~t~~ld~--~lgg~~vq~R~~Qg~Es~~Fl~~F~~~~~i~~Gg~~sgf~~~~~~~~~~~rL~~v~G~~~v~~~e 151 (347)
T 1j72_A 74 QGACAVLAVQLDD--YLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATE 151 (347)
T ss_dssp HHHHHHHHHHHHH--HTTTCSEEEEEETTSCCHHHHTTCSSCCEEECSSCCTTCCCCCCCCCEEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHH--HhCCCCcEEEeeCCCCCHHHHHhhCCCeEEeeCCccccccccccCCCCCcEEEEEECCCceEEEE
Confidence 3457799999999 58999999999999 9999999999999999999999999988765679999999999999999
Q ss_pred eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088 82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161 (282)
Q Consensus 82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~ 161 (282)
||++++||||+|||||+++..||+|+|++|+..||.+|+++|+.|++.+++|++++++|+| |.|+++||.+|| |+.
T Consensus 152 V~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~E---G~E~~~Fw~~LG-g~~ 227 (347)
T 1j72_A 152 RALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTD---GEEPAEMIQVLG-PKP 227 (347)
T ss_dssp ECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEET---TCCCHHHHHHHC-SCC
T ss_pred EeeeHHHcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeC---CCCHHHHHHHhC-CCc
Confidence 9999999999999999999999999999999999999999999998888888999999999 899999999999 665
Q ss_pred CCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecc-cCCccccCCCCEEEEecCC-CeEEEEecCCCCHHHH
Q psy8088 162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQI-PLAQKSLNQGDTFILDTVT-SGIYVWIGKDSTTAEK 239 (282)
Q Consensus 162 ~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~-~~~q~~L~s~~vfILD~g~-~~iyvW~G~~as~~er 239 (282)
.+.... .++|...+......+|||+|++.+|++.++||..+ +|+|++|++++|||||+++ ++||||+|++|+..+|
T Consensus 228 ~~~~~~--~~~d~~~~~~~~~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er 305 (347)
T 1j72_A 228 ALKEGN--PEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKER 305 (347)
T ss_dssp CCBCSC--CSSCCTTSSSSSCCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHH
T ss_pred ccccCC--cchhhhhhhhcccCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHH
Confidence 443211 11222223334467999999999999999999765 9999999999999999992 4999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 240 VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 240 ~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+.|+.+|++|++..+||.+++|++|.||.||..|+..|.
T Consensus 306 ~~A~~~A~~y~~~~~rp~~~~i~~v~eG~Ep~~Fk~~F~ 344 (347)
T 1j72_A 306 QAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFK 344 (347)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEETTCCCTTTCCBST
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEcCCCCCHHHHHHhh
Confidence 999999999999999999999999999999999999874
No 2
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=100.00 E-value=1.3e-63 Score=495.13 Aligned_cols=266 Identities=32% Similarity=0.502 Sum_probs=240.0
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ 81 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e 81 (282)
..++|++|++||+ .+||.|+||||+|| |++||+||+++|+|++||++|||+|++++++..+|||||+|+++++++|
T Consensus 72 ~g~aA~~tveLd~--~lgg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~Gg~~sgf~~v~~~~~~~~rL~~vkG~~~v~~~e 149 (729)
T 1d0n_A 72 SGAAAIFTVQLDD--YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATE 149 (729)
T ss_dssp HHHHHHHHHHHHH--HTTSCCEEEEEETTCCCHHHHHTCSSCEEEESCCTTTTCCCCCCSSCCCCEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHH--HcCCcceEEEEecCCCCHHHHHhccCCcEEeeCCcccCcccccccCCCCcEEEEEECCCcEEEEE
Confidence 3567899999999 58999999999999 9999999999999999999999999998876789999999999999999
Q ss_pred eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088 82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161 (282)
Q Consensus 82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~ 161 (282)
||++++|||++|||||++++.||+|+|++||..||.+|+++|+.|++.+++|++++.+|+| |.|+++||++|| ++.
T Consensus 150 V~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~er~g~~~i~~v~E---g~e~~eFw~~LG-g~~ 225 (729)
T 1d0n_A 150 VPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEE---GAEPEAMLQVLG-PKP 225 (729)
T ss_dssp ECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHSGGGCSEEEEEET---TCCCHHHHHHHC-SCC
T ss_pred EeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhhhcCCCccEEEecC---CCChHHHHHHcC-CCc
Confidence 9999999999999999999999999999999999999999999999778889999999999 889999999999 665
Q ss_pred CCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecc-cCCccccCCCCEEEEecCCCe-EEEEecCCCCHHHH
Q psy8088 162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQI-PLAQKSLNQGDTFILDTVTSG-IYVWIGKDSTTAEK 239 (282)
Q Consensus 162 ~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~-~~~q~~L~s~~vfILD~g~~~-iyvW~G~~as~~er 239 (282)
.+.... + ++...+......+|||+|++.+|++.+++|..+ +|+|++|++++|||||||+.+ ||||+|++|+..+|
T Consensus 226 ~~~~~~--~-~~~~~~~~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er 302 (729)
T 1d0n_A 226 TLPEAT--E-DTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEER 302 (729)
T ss_dssp CCCCCC--G-GGSCCCCCCCCCCEEEEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHH
T ss_pred ccCCCC--c-chhhhhhccccCcEEEEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHHH
Confidence 442111 0 011112234567899999999999999999887 999999999999999999333 99999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 240 VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 240 ~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+.||.+|++|++..+||.+++|++|.||.||..||..|.
T Consensus 303 ~~A~~~A~~y~~~~~~p~~t~i~~V~eG~Ep~~Fk~~F~ 341 (729)
T 1d0n_A 303 KAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFK 341 (729)
T ss_dssp TTHHHHHHHHHHHTTCCTTCEEEEEETTCCCHHHHTTBT
T ss_pred HHHHHHHHHHHhhccCCCCCeEEEEeCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999884
No 3
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-60 Score=436.61 Aligned_cols=251 Identities=23% Similarity=0.273 Sum_probs=203.5
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCC-eEEecCccCCCCeeecCCCCCcceEEEEEeC--ccEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTG-IRYLPGGVASGFNHVDINAPGEKKLYQIKGK--KNIR 78 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~-i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~--~~~~ 78 (282)
...+|++++++|+ .+||+|+|+||+|| |++||+||+++ ++|++||.++++.+.. ...+|||||+|+ ++++
T Consensus 106 ~g~aa~~~v~Ld~--~lgg~~vq~R~~QG~Es~~Fls~Fkg~~~ii~~Gg~~~~~~~~~---~~~~rL~~vrg~~~~~vr 180 (371)
T 3fg6_A 106 LTTSAFLTVQLDR--SLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGGQAP---APPTRLFQVRRNLASITR 180 (371)
T ss_dssp HHHHHHHHHHHHH--HTTSCCEEEEEETTCCCHHHHTTSCSSCEEEC-----------------CCEEEEEECCSSSCCE
T ss_pred HHHHHHHHHHHHH--HcCCCceEEEEecCCCcHHHHHHhCCceEEEEcCCccCCCccCC---cCccEEEEEeccCCCceE
Confidence 3456799999999 58999999999999 99999999998 8999999876544332 257899999998 6799
Q ss_pred EEEeecccccCCCCCeEEEecC-CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhC
Q psy8088 79 VRQVALSVGSMNKGDCFALDTG-REVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157 (282)
Q Consensus 79 ~~eV~~~~~sL~s~d~fIld~~-~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg 157 (282)
++|||++++||||+|||||+++ +.||+|+|++|+..||.+|+.+|+.|+. ...+|+| |.||++||.+||
T Consensus 181 ~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~Er~~A~~~a~~i~~-------~~~~v~E---G~Ep~~Fw~~LG 250 (371)
T 3fg6_A 181 IVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEYVASVLKC-------KTLRIQE---GEEPEEFWNSLG 250 (371)
T ss_dssp EEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHHHHHHHHHHHHHTTC-------EEEEEET---TCCCHHHHHHTT
T ss_pred EEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHHHHHHHHHHHHHhcC-------CeEEEeC---CCCCHHHHHHcC
Confidence 9999999999999999999999 9999999999999999999999999964 1356788 899999999999
Q ss_pred CCCCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHH
Q psy8088 158 SGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTA 237 (282)
Q Consensus 158 ~g~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~ 237 (282)
|+..+...... .+......+|||+|++.+|.+.++||. ++|+|+||++++|||||++ ++||||+|++|+..
T Consensus 251 -g~~~~~~~~~~------~~~~~~~~~rLf~~s~~~G~~~v~ev~-~~f~Q~dL~~~dv~ILD~~-~~IfVW~G~~as~~ 321 (371)
T 3fg6_A 251 -GKKDYQTSPLL------ETQAEDHPPRLYGCSNKTGRFVIEEIP-GEFTQDDLAEDDVMLLDAW-EQIFIWIGKDANEV 321 (371)
T ss_dssp -SCCCCBCCTTT------SSCCCSSCCEEEEEECTTSSCEEEECC-SSCCGGGSCTTSEEEEECS-SCEEEEECTTCCHH
T ss_pred -CCcccCcchhh------cccccccCcEEEEEEcCCCcEEEEEec-ccccHhHCCCCCEEEEeCC-CEEEEEECCCCCHH
Confidence 66555321110 011223568999999999999999996 3899999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCCcceEEEecCCCCChhhhhhhh
Q psy8088 238 EKVEGLKRGQAFLTNN--NYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 238 er~~a~~~A~~~~~~~--~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
||+.|+.+|++|++.. +||.+++|.+|.||.||..|+..|.
T Consensus 322 Er~~A~~~A~~yi~~~~~~r~~~t~i~~v~eG~Ep~~Fk~~F~ 364 (371)
T 3fg6_A 322 EKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHEPPTFTGWFL 364 (371)
T ss_dssp HHHHHHHHHTTCC----------CCEEEEETTCCCHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCccCCCCCCCEEEecCCCCCHHHHhhhc
Confidence 9999999999999997 5888999999999999999998873
No 4
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=100.00 E-value=2e-61 Score=447.99 Aligned_cols=251 Identities=20% Similarity=0.251 Sum_probs=90.0
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCc--cEEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKK--NIRV 79 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~--~~~~ 79 (282)
...+|++++++|+ .+||+|+|+||+|| |++||+||+++|+|++||+++. ...+....+|||||+|++ ++++
T Consensus 120 ~g~aa~~av~Ld~--~lgg~~vq~Re~QG~Es~~Fls~Fkg~iii~~Gg~~~~---~~~~~~~~~rLf~VrG~~~~~~ra 194 (398)
T 3fg7_A 120 ITASAYQAVILDQ--KYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSRT---NNLETGPSTRLFQVQGTGANNTKA 194 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH--HhCCceEEEEeecCCCCHHHHHHhCCeEEEeeCCcccC---CccCccCCcEEEEEECCCCCceEE
Confidence 4567899999998 58999999999999 9999999999999999998743 223334578999999996 7999
Q ss_pred EEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCC
Q psy8088 80 RQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSG 159 (282)
Q Consensus 80 ~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g 159 (282)
+|||++++||||+|||||++++.||+|+|++|+..||.+|..+|+.|++ +++.+|+| |.||++||.+|| |
T Consensus 195 ~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i~~------~~~~~v~E---G~Ep~~Fw~~LG-g 264 (398)
T 3fg7_A 195 FEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTISR------TEKQVVVE---GQEPANFWMALG-G 264 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHhcC------CcEEEEeC---CCCchhHHHHhC-C
Confidence 9999999999999999999999999999999999999999999999963 35677888 899999999999 6
Q ss_pred CCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHH
Q psy8088 160 SNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK 239 (282)
Q Consensus 160 ~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er 239 (282)
+..+.... ...+......+|||+|++.+|.+.++||. +|+|++|++++|||||+| .+||||+|++|+..||
T Consensus 265 ~~~~~~~~------~~~~~~~~~~~rLf~~s~~~G~~~v~EV~--~f~Q~dL~~~dv~ILD~g-~~IfVW~G~~as~~Er 335 (398)
T 3fg7_A 265 KAPYANTK------RLQEENLVITPRLFECSNKTGRFLATEIP--DFNQDDLEEDDVFLLDVW-DQVFFWIGKHANEEEK 335 (398)
T ss_dssp -------------------CCCCCCEEEEEECTTSSCEEEECT--TCCGGGCCTTSEEEEECS-SCEEEEECTTCCHHHH
T ss_pred CccCCChh------hhccchhcccCeeEEEEcCCCCEEEEEec--ccCHHHCCCCCEEEEeCC-CEEEEEECCCCCHHHH
Confidence 65442211 00111224579999999999999999997 899999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCCCcceEEEecCCCCChhhhhhhh
Q psy8088 240 VEGLKRGQAFLTNN--NYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 240 ~~a~~~A~~~~~~~--~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+.|+.+|++|++.. +||.+++|.+|.||.||..||..|.
T Consensus 336 ~~Al~~A~~yi~~~~~~r~~~tpi~~V~eG~Ep~~Fk~~F~ 376 (398)
T 3fg7_A 336 KAAATTAQEYLKTHPSGRDPETPIIVVKQGHEPPTFTGWFL 376 (398)
T ss_dssp HHHHHHHHHHHHHSSSSCCTTCCEEEEETTCCCHHHHTTSS
T ss_pred HHHHHHHHHHHHhCcccCCCCCCEEEEcCCCCCHHHHHhhh
Confidence 99999999999987 6777899999999999999998873
No 5
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=100.00 E-value=3.5e-58 Score=420.67 Aligned_cols=251 Identities=24% Similarity=0.298 Sum_probs=211.6
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCC-eEEecCc-cCCCCeeecCCCCCcceEEEEEeCc--cE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTG-IRYLPGG-VASGFNHVDINAPGEKKLYQIKGKK--NI 77 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~-i~~~~Gg-~~s~f~~~~~~~~~~~rL~~v~G~~--~~ 77 (282)
...+|++++++|+ .++|+|+|+||+|| |++|++||+++ ++|++|| ..+++. ++ ...+|||||+|+. ++
T Consensus 65 ~~~aa~~~~~ld~--~lgg~~vq~R~~Qg~Es~~Fl~~F~g~~~ii~~gg~~~~~~~---~~-~~~~rL~~v~g~~~~~~ 138 (344)
T 2fh1_A 65 VAASAILTAQLDE--ELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQ---TA-PASTRLFQVRANSAGAT 138 (344)
T ss_dssp HHHHHHHHHHHHH--HTTSCSEEEEEETTCCCHHHHGGGTTCCEEEESCCCCTTTCS---CC-CCSSEEEEEEECTTCCE
T ss_pred HHHHHHHHHHHHH--HhCCCceEEEeecCCCCHHHHHhhCCCeEEEEcCCcccCCcc---CC-CCCceEEEEECCCCCce
Confidence 3456799999999 47999999999999 99999999987 7777776 445553 22 2578999999985 89
Q ss_pred EEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhC
Q psy8088 78 RVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157 (282)
Q Consensus 78 ~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg 157 (282)
+++|||++++||||+|||||+++..||+|+|++|+..||.+|.++|+.|+ +++.+|+| |.||++||.+||
T Consensus 139 ~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~-------~~i~~v~E---G~E~~~Fw~~LG 208 (344)
T 2fh1_A 139 RAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLR-------AQPVQVAE---GSEPDGFWEALG 208 (344)
T ss_dssp EEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHTT-------CCCEEEET---TCCCHHHHHHTT
T ss_pred EEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHhC-------CCcEEEeC---CCCcHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999983 35677888 899999999999
Q ss_pred CCCCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHH
Q psy8088 158 SGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTA 237 (282)
Q Consensus 158 ~g~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~ 237 (282)
|+..+..... +. .+......+|||+|++.+|.+.++||. ++|+|++|++++|||||+| ++||||+|++|+..
T Consensus 209 -g~~~y~~~~~----~~-~~~~~~~~~rLf~~s~~~G~~~v~ev~-~~f~q~dL~~~dv~iLD~g-~~IfVW~G~~as~~ 280 (344)
T 2fh1_A 209 -GKAAYRTSPR----LK-DKKMDAHPPRLFACSNKIGRFVIEEVP-GELMQEDLATDDVMLLDTW-DQVFVWVGKDSQEE 280 (344)
T ss_dssp -SCCCCBCCHH----HH-CSCC--CCCEEEEEECTTSSCEEEEEC-SSCCGGGSCTTSEEEEECS-SCEEEEECTTCCHH
T ss_pred -CCCccccccc----cc-cccccccCCEEEEEEcCCCCEEEEEcc-CCcCHhHCCCCCEEEEeCC-CEEEEEECCCCCHH
Confidence 6654421100 00 011224579999999999999999997 5999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCCcceEEEecCCCCChhhhhhhh
Q psy8088 238 EKVEGLKRGQAFLTNN--NYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 238 er~~a~~~A~~~~~~~--~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+|+.|+.+|++|++.. +||.+++|.+|.||.||..||..|.
T Consensus 281 er~~A~~~A~~y~~~~~~~r~~~t~i~~V~eG~Ep~~Fk~~F~ 323 (344)
T 2fh1_A 281 EKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFL 323 (344)
T ss_dssp HHHHHHHHHHHHHHTC-------CCEEEEETTCCCHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCccCCCCCCcEEEEcCCCCCHHHHHHHh
Confidence 9999999999999987 7888999999999999999999874
No 6
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=100.00 E-value=9.2e-54 Score=424.48 Aligned_cols=251 Identities=22% Similarity=0.311 Sum_probs=218.3
Q ss_pred hhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCC-eEEecCccCCCCeeecCCCCCcceEEEEEeCc--cEEE
Q psy8088 5 DRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTG-IRYLPGGVASGFNHVDINAPGEKKLYQIKGKK--NIRV 79 (282)
Q Consensus 5 ~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~-i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~--~~~~ 79 (282)
..+|++++++|+ .+||+|+|+|++|| |++||+||+++ |+|++||+++ ++++. ....+|||||+|+. ++++
T Consensus 451 g~aa~~~veLd~--~lgg~~vq~R~~Qg~E~~~Fl~~F~g~~~ii~~Gg~~~--~~~~~-~~~~~rLf~vrg~~~~~~~~ 525 (729)
T 1d0n_A 451 AASAILTAQLDE--ELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSR--EGGQT-APASTRLFQVRASSSGATRA 525 (729)
T ss_dssp HHHHHHHHHHHH--TTTSCSEEEEEETTCCCHHHHTTSTTSCEEEESSCCCS--SCCCC-CCCSSEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHH--HcCCCceEEecccCCCCHHHHHhcCCCeEEEEeCCccc--cCccC-CCCCCEEEEEECCCCCceEE
Confidence 456799999999 58999999999999 99999999999 9999999875 23332 23679999999984 8999
Q ss_pred EEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCC
Q psy8088 80 RQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSG 159 (282)
Q Consensus 80 ~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g 159 (282)
.|||++++||||+|||||+++..||+|+|+.|+..||.+|..+|+.|.. ++.+|+| |+||++||.+|| |
T Consensus 526 ~eV~~~~ssLns~d~fIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~-------~~~~v~E---G~E~~~FW~~LG-g 594 (729)
T 1d0n_A 526 VEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA-------QPVQVAE---GSEPDSFWEALG-G 594 (729)
T ss_dssp EEECCCGGGCCSSSEEEEECSSCCBCEECTTCCHHHHHHHHHHHHHHTC-------CCCCEET---TCCCHHHHHTTT-S
T ss_pred EEecCChhhcCcCCeEEEecCCeEEEEECCCCCHHHHHHHHHHHHHhcc-------CcEEEeC---CCChHHHHHhcC-C
Confidence 9999999999999999999999999999999999999999999999972 2556888 899999999999 7
Q ss_pred CCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHH
Q psy8088 160 SNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK 239 (282)
Q Consensus 160 ~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er 239 (282)
+..|...... . + +......+|||+|++.+|.+.++||.. +|+|+||++++|||||++ ++||||+|++|+..+|
T Consensus 595 ~~~y~~~~~~-~-~---~~~~~~~~rLf~~s~~~G~~~v~ev~~-~f~Q~dL~~~dv~iLD~~-~eifvWiG~~a~~~er 667 (729)
T 1d0n_A 595 KATYRTSPRL-K-D---KKMDAHPPRLFACSNKIGRFVIEEVPG-EFMQEDLATDDVMLLDTW-DQVFVWVGKDSQDEEK 667 (729)
T ss_dssp CCCCCCCCCC-S-T---THHHHSCCEEEEEECTTTCCEEEECCS-SCCGGGCCTTSEEEEECS-SCEEEEECTTSCHHHH
T ss_pred CCccCccccc-c-c---ccccccCCeEEEEEcCCCcEEEEEecC-cccHhHCCCCCEEEEeCC-CEEEEEECCCCCHHHH
Confidence 7655321110 0 1 112245799999999999999999964 799999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHHc--CCCCCcceEEEecCCCCChhhhhhhh
Q psy8088 240 VEGLKRGQAFLTN--NNYPAWTKTGEIKTSLEVWAEEKEEA 278 (282)
Q Consensus 240 ~~a~~~A~~~~~~--~~~~~~~~i~~v~eG~Ep~~F~~~~~ 278 (282)
+.|+.+|++|++. .+||..+||.+|.+|.||..|+..|.
T Consensus 668 ~~al~~A~~Y~~~~~~~r~~~~pi~~V~~G~Ep~~F~~~F~ 708 (729)
T 1d0n_A 668 TEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFL 708 (729)
T ss_dssp SSHHHHHHHHHHHCTTCCCTTCCEEEEETTCCCHHHHTTCT
T ss_pred HHHHHHHHHHHHhCcccCCCCCcEEEEeCCCCCHHHHhhhh
Confidence 9999999999997 46777899999999999999999874
No 7
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=99.97 E-value=5.5e-31 Score=203.38 Aligned_cols=105 Identities=38% Similarity=0.608 Sum_probs=87.3
Q ss_pred CCCeeecCCCCCcceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCC
Q psy8088 53 SGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHN 132 (282)
Q Consensus 53 s~f~~~~~~~~~~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~ 132 (282)
|||+||+++. ..+|||||+|+++++++|||++++|||++||||||++..||+|+|++|+..||.+|+++|+.| +.+++
T Consensus 1 SGf~~v~~~~-~~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i-~~er~ 78 (114)
T 1svq_A 1 SGFNHVKPTE-YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI-DAERK 78 (114)
T ss_dssp ---------C-CCEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH-HHHHT
T ss_pred CCCccccCCC-CCcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh-hhccC
Confidence 6899999886 789999999999999999999999999999999999999999999999999999999999999 45778
Q ss_pred CcceEEEecCCCCCc--chhHHHHHhCCCCCCC
Q psy8088 133 GRATVSIIDENSSPV--EVTRFFTELGSGSNNQ 163 (282)
Q Consensus 133 g~~~v~~v~e~~~g~--E~~~F~~~lg~g~~~~ 163 (282)
|++++.+|+| |. |+++||.+|| |+..+
T Consensus 79 g~~~i~vv~e---g~~~E~~~Fw~~LG-g~~~~ 107 (114)
T 1svq_A 79 GLPKVEVFCE---TDSDIPAEFWKLLG-GKGAI 107 (114)
T ss_dssp TCSEEEECCC---CTTCCCHHHHHHHT-C----
T ss_pred CCccEEEEeC---CCcCCcHHHHHHcC-CCCCC
Confidence 8899999999 77 9999999999 66543
No 8
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=99.96 E-value=1.3e-28 Score=187.24 Aligned_cols=95 Identities=38% Similarity=0.651 Sum_probs=89.8
Q ss_pred cceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCC
Q psy8088 65 EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENS 144 (282)
Q Consensus 65 ~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~ 144 (282)
.+|||||+|+++++++|||++++|||++||||||+++.||+|+|++|+..||.+|.++|+.|++.+++|++++.+|+|
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i~~~er~~~~~i~~v~e-- 79 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEE-- 79 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTSTTCSEEEEEET--
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEeC--
Confidence 579999999999999999999999999999999999999999999999999999999999998878888899999999
Q ss_pred CCcchhHHHHHhCCCCCCC
Q psy8088 145 SPVEVTRFFTELGSGSNNQ 163 (282)
Q Consensus 145 ~g~E~~~F~~~lg~g~~~~ 163 (282)
|.|+++||.+|| |+..|
T Consensus 80 -G~E~~~Fw~~LG-g~~~~ 96 (104)
T 1kcq_A 80 -GTEPEAMLQVLG-PKPAL 96 (104)
T ss_dssp -TCCCHHHHHHHC-SCCCC
T ss_pred -CCCCHHHHHHcC-CCCCC
Confidence 899999999999 66554
No 9
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=99.95 E-value=5.3e-27 Score=214.22 Aligned_cols=187 Identities=18% Similarity=0.320 Sum_probs=148.2
Q ss_pred CcceEEEEEeCccEEEEEee-cccccCCCCCeEEEe--------cCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCc
Q psy8088 64 GEKKLYQIKGKKNIRVRQVA-LSVGSMNKGDCFALD--------TGREVLVYVGSKAARTERLKAISVANQIRDQDHNGR 134 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~-~~~~sL~s~d~fIld--------~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~ 134 (282)
...++|||.|.+ .++|| ..+++|+++||||+. ....||+|+|++|+..|+..|+.++..|.+ +.+|+
T Consensus 7 g~~~vwrIe~~~---~~~v~~~~~G~Fy~gD~YIvl~ty~~~~~~~~~i~~W~G~~ss~de~~~aa~~~~~ld~-~lgg~ 82 (344)
T 2fh1_A 7 GQKQIWRIEGSN---KVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDE-ELGGT 82 (344)
T ss_dssp SEEEEEEEETTE---EEECCGGGTTEEETTSEEEEEEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTSC
T ss_pred CCEEEEEEcCCe---EEECCHHHcCeecCCCeEEEEEEeecCCCceEEEEEEecCCCCHhHHHHHHHHHHHHHH-HhCCC
Confidence 357899999874 45665 478999999999994 234899999999999999999999999976 46777
Q ss_pred ceEEEecCCCCCcchhHHHHHhCCCCCCC--CCCCCCCCCChhhhccccccceEEEEECC-CCCeEEEEeecccCCcccc
Q psy8088 135 ATVSIIDENSSPVEVTRFFTELGSGSNNQ--VADVPYGGDDAEFETKQDKAVKLYKISDA-SGNVKSELIEQIPLAQKSL 211 (282)
Q Consensus 135 ~~v~~v~e~~~g~E~~~F~~~lg~g~~~~--~~~~~~~~~d~~~~~~~~~~~rLy~vs~~-~g~~~~~ev~~~~~~q~~L 211 (282)
+..+.+.| |.||+.|+++|+ ++..+ ...... .... .....+|||+|.+. .+.+.+.|| +++.++|
T Consensus 83 ~vq~R~~Q---g~Es~~Fl~~F~-g~~~ii~~gg~~~----~~~~-~~~~~~rL~~v~g~~~~~~~~~eV---~~~~ssL 150 (344)
T 2fh1_A 83 PVQSRVVQ---GKEPAHLMSLFG-GKPMIIYKGGTSR----EGGQ-TAPASTRLFQVRANSAGATRAVEV---LPKAGAL 150 (344)
T ss_dssp SEEEEEET---TCCCHHHHGGGT-TCCEEEESCCCCT----TTCS-CCCCSSEEEEEEECTTCCEEEEEE---CCSGGGC
T ss_pred ceEEEeec---CCCCHHHHHhhC-CCeEEEEcCCccc----CCcc-CCCCCceEEEEECCCCCceEEEEe---cCchhhc
Confidence 65555557 899999999999 54211 111110 0011 12346899999964 468899999 7999999
Q ss_pred CCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhh
Q psy8088 212 NQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEK 275 (282)
Q Consensus 212 ~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~ 275 (282)
+|++|||||++ ..||+|+|++|+..||..|+.+|+.+ ..++.+|.||.||..|-+
T Consensus 151 ns~d~FIL~~~-~~iyvW~G~~s~~~er~~A~~~a~~l--------~~~i~~v~EG~E~~~Fw~ 205 (344)
T 2fh1_A 151 NSNDAFVLKTP-SAAYLWVGTGASEAEKTGAQELLRVL--------RAQPVQVAEGSEPDGFWE 205 (344)
T ss_dssp BTTSEEEEECS-SCEEEEECTTCCHHHHHHHHHHHHHT--------TCCCEEEETTCCCHHHHH
T ss_pred CCCceEEEecC-CEEEEEECCCCCHHHHHHHHHHHHHh--------CCCcEEEeCCCCcHHHHH
Confidence 99999999999 89999999999999999999999875 145788999999999854
No 10
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=99.95 E-value=2e-26 Score=210.72 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=158.1
Q ss_pred CCCeeecCCCCCcceEEEEEeCccEEEEEeec-ccccCCCCCeEEEecC-----CeEEEEeCCCCCHHHHHHHHHHHHHh
Q psy8088 53 SGFNHVDINAPGEKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDTG-----REVLVYVGSKAARTERLKAISVANQI 126 (282)
Q Consensus 53 s~f~~~~~~~~~~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~~-----~~iyvW~G~~ss~~er~~A~~~a~~l 126 (282)
..|..+... ....+|||.+.+ .++||. ..+.|.++||||+... ..||+|+|++|+.+|+..|+.+|..|
T Consensus 10 ~~~~~~~~~--~g~~iWrie~~~---~~~vp~~~~G~Fy~gd~Yivl~t~~~~~~~i~~W~G~~ss~de~~~aa~~t~~l 84 (347)
T 1j72_A 10 SPFPGSVQD--PGLHVWRVEKLK---PVPVAQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQL 84 (347)
T ss_dssp -CCCSTTSS--SEEEEEEECSSS---EEECCTTTTTEEETTSEEEEEEECSSSCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhhcccC--CCeEEEEEcCCE---EEECCHHHcCeecCCCEEEEEEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345544432 357789998753 567765 5799999999999642 47999999999999999999999999
Q ss_pred ccccCCCcceEEEecCCCCCcchhHHHHHhCCCCCCCCCCCCCCCCChhh---hccccccceEEEEECCCCCeEEEEeec
Q psy8088 127 RDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEF---ETKQDKAVKLYKISDASGNVKSELIEQ 203 (282)
Q Consensus 127 ~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~~~~~~~~~~~~d~~~---~~~~~~~~rLy~vs~~~g~~~~~ev~~ 203 (282)
.+ ..+|++....+.| |.||++|+.+|+ +...+.... ....+ +......+|||+|.+. +.+.+.+|
T Consensus 85 d~-~lgg~~vq~R~~Q---g~Es~~Fl~~F~-~~~~i~~Gg----~~sgf~~~~~~~~~~~rL~~v~G~-~~v~~~eV-- 152 (347)
T 1j72_A 85 DD-YLGGRPVQHREVQ---GNESDLFMSYFP-RGLKYQEGG----VESGFKHVVPNEVVVQRLYQVKGK-KNIRATER-- 152 (347)
T ss_dssp HH-HTTTCSEEEEEET---TSCCHHHHTTCS-SCCEEECSS----CCTTCCCCCCCCCEEEEEEEEECS-SSCEEEEE--
T ss_pred HH-HhCCCCcEEEeeC---CCCCHHHHHhhC-CCeEEeeCC----ccccccccccCCCCCcEEEEEECC-CceEEEEE--
Confidence 76 4678777666778 999999999998 433332111 11111 1111246899999875 57888999
Q ss_pred ccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhh
Q psy8088 204 IPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEK 275 (282)
Q Consensus 204 ~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~ 275 (282)
+++.++|++++|||||++ ..||+|+|++|+..||..|+.+|.. |+...+...+.+.+|.||.||..|-+
T Consensus 153 -~~~~~sLns~d~FIL~~~-~~iy~W~G~~s~~~Er~~A~~~a~~-i~~~~~~g~~~v~~v~EG~E~~~Fw~ 221 (347)
T 1j72_A 153 -ALNWDSFNTGDCFILDLG-QNIFAWCGGKSNILERNKARDLALA-IRDSERQGKAQVEIVTDGEEPAEMIQ 221 (347)
T ss_dssp -CSSGGGCBTTSEEEEEET-TEEEEEECTTCCHHHHHHHHHHHHH-HHTTSCCSSCEEEEEETTCCCHHHHH
T ss_pred -eeeHHHcCCCceEEEecC-CEEEEEECCCCCHHHHHHHHHHHHH-HHhhccCCCceEEEEeCCCCHHHHHH
Confidence 799999999999999999 8999999999999999999999987 55555555678999999999999954
No 11
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=202.21 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=143.4
Q ss_pred cceEEEEEeCccEEEEEeec-ccccCCCCCeEEEe----cCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEE
Q psy8088 65 EKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALD----TGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSI 139 (282)
Q Consensus 65 ~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld----~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~ 139 (282)
...+|+|.+.. .++||. ..++|+++||||+. .+..||+|+|++|+.+|+..|+.+|..|.+ ..+|++..+.
T Consensus 53 ~l~vWrIe~~~---~~~vp~~~~G~Fy~gD~YIvl~ty~~~~~i~~W~G~~ss~de~g~aa~~~v~Ld~-~lgg~~vq~R 128 (371)
T 3fg6_A 53 KVEIWRVENNG---RIQVDQNSYGEFYGGDCYIILYTYPRGQIIYTWQGANATRDELTTSAFLTVQLDR-SLGGQAVQIR 128 (371)
T ss_dssp EEEEEEECSSS---EEECCGGGTTEECTTCEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTSCCEEEE
T ss_pred cEEEEEEECCe---eeeCChHHcCeEecCceEEEEEEecCCeEEEEeeCCCCChhHHHHHHHHHHHHHH-HcCCCceEEE
Confidence 45678887664 457765 67999999999994 456899999999999999999999999976 5678776656
Q ss_pred ecCCCCCcchhHHHHHhCCCC-CC-CCCCCCCCCCChhhhccccccceEEEEECCC-CCeEEEEeecccCCccccCCCCE
Q psy8088 140 IDENSSPVEVTRFFTELGSGS-NN-QVADVPYGGDDAEFETKQDKAVKLYKISDAS-GNVKSELIEQIPLAQKSLNQGDT 216 (282)
Q Consensus 140 v~e~~~g~E~~~F~~~lg~g~-~~-~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~-g~~~~~ev~~~~~~q~~L~s~~v 216 (282)
+.| |.||++|..+|+ +. .. +....... ........+|||+|.+.. ..+.+.|| +++.++|+|++|
T Consensus 129 ~~Q---G~Es~~Fls~Fk-g~~~ii~~Gg~~~~-----~~~~~~~~~rL~~vrg~~~~~vr~~EV---~~~~ssLns~d~ 196 (371)
T 3fg6_A 129 VSQ---GKEPVHLLSLFK-DKPLIIYKNGTSKK-----GGQAPAPPTRLFQVRRNLASITRIVEV---DVDANSLNSNDV 196 (371)
T ss_dssp EET---TCCCHHHHTTSC-SSCEEEC-------------------CCEEEEEECCSSSCCEEEEE---CSSGGGCBTTSE
T ss_pred Eec---CCCcHHHHHHhC-CceEEEEcCCccCC-----CccCCcCccEEEEEeccCCCceEEEEe---cCCHHHccCCCe
Confidence 667 999999999999 44 11 11111000 001123468999998753 46788899 799999999999
Q ss_pred EEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhh
Q psy8088 217 FILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEK 275 (282)
Q Consensus 217 fILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~ 275 (282)
||||++...||+|+|++|+..||..|+.+|+.+ +. ...+|.||.||..|-+
T Consensus 197 FILd~~~~~iyvW~G~~ss~~Er~~A~~~a~~i-~~-------~~~~v~EG~Ep~~Fw~ 247 (371)
T 3fg6_A 197 FVLKLPQNSGYIWVGKGASQEEEKGAEYVASVL-KC-------KTLRIQEGEEPEEFWN 247 (371)
T ss_dssp EEEECTTSEEEEEECTTCCHHHHHHHHHHHHHT-TC-------EEEEEETTCCCHHHHH
T ss_pred EEEEcCCCeEEEEECCCCCHHHHHHHHHHHHHh-cC-------CeEEEeCCCCCHHHHH
Confidence 999998348999999999999999999999874 21 1367899999999964
No 12
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=99.92 E-value=2.5e-26 Score=203.66 Aligned_cols=192 Identities=12% Similarity=0.082 Sum_probs=53.2
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ 81 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e 81 (282)
...+|+++++||+ .++|.||||||+|| |++||+||+++|+|++||++|||+||+++. ..+|+++++..+....++
T Consensus 92 ~g~aa~~av~Ld~--~lgg~~vq~Re~Qg~Es~~Fl~~F~~~i~~~~GG~~sgf~~v~~~~-~~~r~~rl~~~e~~~~r~ 168 (297)
T 3tu5_B 92 SGAAAIFTVQLDD--YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASKLRKVAEQT-SEGRPKKPSYVEAESERS 168 (297)
T ss_dssp HHHHHHHHHHHHH--HTTTCCEEEEEETTCCCHHHHTTCTTCCEEESCCCCCCCBCCCCCC-------------------
T ss_pred HHHHHHHHHHHHH--HcCCCceEEEEeCCcCCHHHHHHhccCcEEecCCCCCCCceecccC-CCCcccceeeeecccccc
Confidence 3457799999999 68999999999999 999999999999999999999999999876 456777776665555677
Q ss_pred eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088 82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161 (282)
Q Consensus 82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~ 161 (282)
+.+++.++++|||||+|.+..+|.|.+ +.++..++....+..+.+++.+..+.. +.+++.++..++. ..
T Consensus 169 ~~ls~vs~~~Gd~fi~Dv~~~A~q~le-------~~r~~~~~~~~~d~~~~~~~~v~~~~~---~~ep~~~~~~~~p-~s 237 (297)
T 3tu5_B 169 ALLAAIRGHSGTLSLRKVSSLASEELQ-------SFRNAALGAPGLDKPQQEDLGLPPPPA---LPPPPAPAPQAPS-AS 237 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeEEeccCCceeeccccHHHHHHHH-------HHHHhhhcccCcCcccccccCcccCCc---CCCCCCccccCCC-CC
Confidence 788999999999999999999999974 344444444444433444455555555 6777788888773 22
Q ss_pred CCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEee--cc-cC-CccccC
Q psy8088 162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIE--QI-PL-AQKSLN 212 (282)
Q Consensus 162 ~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~--~~-~~-~q~~L~ 212 (282)
.. +.. ..++...+........||.|++.+|.+++..|. +. || +++.+.
T Consensus 238 ~~-~~~--~~~~~~~~~~dar~A~L~aIrsgtGa~rLkKv~~~~~~P~p~~~~~~ 289 (297)
T 3tu5_B 238 VT-VSR--FSTGTPSNSVNARQALMDAIRSGTGAARLRKTETQEKNPLPSKETIE 289 (297)
T ss_dssp -------------------------------------------------------
T ss_pred CC-CCC--CCCCcccCchhhhhhhhHhhhcCCCCeeccccccccCCCCCchhhhh
Confidence 11 111 111222222334567899999999988776663 33 77 343333
No 13
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=99.90 E-value=1.2e-25 Score=208.15 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred ceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec-----C---CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcce
Q psy8088 66 KKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT-----G---REVLVYVGSKAARTERLKAISVANQIRDQDHNGRAT 136 (282)
Q Consensus 66 ~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~-----~---~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~ 136 (282)
..+|+|.+ ...++||. ..+.|.++||||+.. + ..||+|+|++|+.+|+..|+.+|..|.+ ..+|++.
T Consensus 64 l~iWrIe~---~~~~~vp~~~~G~Fy~gD~YIvl~ty~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~-~lgg~~v 139 (398)
T 3fg7_A 64 VQVWRIEN---LELVPVDSKWLGHFYGGDCYLLLYTYLIGEKQHYLLYVWQGSQASQDEITASAYQAVILDQ-KYNGEPV 139 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeC---CEEEECChHhcCeecCCCeEEEEEEEecCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHH-HhCCceE
Confidence 34555554 34566765 468999999999974 2 3799999999999999999999988875 5667655
Q ss_pred EEEecCCCCCcchhHHHHHhCCCCCCCCCCCCCCCCChhhhccccccceEEEEECCCC-CeEEEEeecccCCccccCCCC
Q psy8088 137 VSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASG-NVKSELIEQIPLAQKSLNQGD 215 (282)
Q Consensus 137 v~~v~e~~~g~E~~~F~~~lg~g~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g-~~~~~ev~~~~~~q~~L~s~~ 215 (282)
...+.| |.||+.|..+|+ +...+...... ...+......+|||+|.+... ...+.|| +++.++|+|++
T Consensus 140 q~Re~Q---G~Es~~Fls~Fk-g~iii~~Gg~~----~~~~~~~~~~~rLf~VrG~~~~~~ra~EV---~~s~sSLns~d 208 (398)
T 3fg7_A 140 QIRVPM---GKEPPHLMSIFK-GRMVVYQGGTS----RTNNLETGPSTRLFQVQGTGANNTKAFEV---PARANFLNSND 208 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeec---CCCCHHHHHHhC-CeEEEeeCCcc----cCCccCccCCcEEEEEECCCCCceEEEEe---cCCHHHccCCc
Confidence 445557 999999999999 54433221110 001112234689999987642 4677788 79999999999
Q ss_pred EEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhh
Q psy8088 216 TFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEK 275 (282)
Q Consensus 216 vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~ 275 (282)
|||||++ ..||+|+|++|+..||..|+.+|..+ +. ..+.+|.||.||..|-+
T Consensus 209 ~FILd~~-~~iyvW~G~~ss~~Er~~A~~va~~i-~~------~~~~~v~EG~Ep~~Fw~ 260 (398)
T 3fg7_A 209 VFVLKTQ-SCCYLWCGKGCSGDEREMAKMVADTI-SR------TEKQVVVEGQEPANFWM 260 (398)
T ss_dssp ------------------------------------------------------------
T ss_pred eEEEEeC-CeEEEEeCCCCCHHHHHHHHHHHHHh-cC------CcEEEEeCCCCchhHHH
Confidence 9999999 89999999999999999999999875 21 46788999999999854
No 14
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=99.81 E-value=2e-19 Score=136.39 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=78.3
Q ss_pred cceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceEE
Q psy8088 183 AVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTG 262 (282)
Q Consensus 183 ~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i~ 262 (282)
.+|||+|.+. +.+.+.+| +++.++|++++|||||++ ..||+|+|++|+..||..|+.+|+.+ +...|+..++|.
T Consensus 2 ~~rL~~v~g~-~~~~~~eV---~~~~~sLns~d~FILd~g-~~iyvW~G~~s~~~Ek~~A~~~a~~i-~~~er~~~~~i~ 75 (104)
T 1kcq_A 2 VQRLFQVKGR-RVVRATEV---PVSWESFNNGDCFILDLG-NNIHQWCGSNSNRYERLKATQVSKGI-RDNERSGRARVH 75 (104)
T ss_dssp CCEEEEEEES-SSEEEEEE---CSSGGGCCTTSEEEEECS-SEEEEEECTTCCHHHHHHHHHHHHHH-HHHTSTTCSEEE
T ss_pred CcEEEEEECC-CcEEEEEe---cCCHHHcCCCCeEEEeCC-CEEEEEeCCCCCHHHHHHHHHHHHHH-HhhccCCCCcEE
Confidence 4799999985 78999999 799999999999999999 89999999999999999999999875 444565678999
Q ss_pred EecCCCCChhhhh
Q psy8088 263 EIKTSLEVWAEEK 275 (282)
Q Consensus 263 ~v~eG~Ep~~F~~ 275 (282)
+|.||.||..|-+
T Consensus 76 ~v~eG~E~~~Fw~ 88 (104)
T 1kcq_A 76 VSEEGTEPEAMLQ 88 (104)
T ss_dssp EEETTCCCHHHHH
T ss_pred EEeCCCCCHHHHH
Confidence 9999999999954
No 15
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=99.74 E-value=6e-18 Score=130.19 Aligned_cols=87 Identities=29% Similarity=0.288 Sum_probs=76.5
Q ss_pred ccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCcceE
Q psy8088 182 KAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKT 261 (282)
Q Consensus 182 ~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~a~~~A~~~~~~~~~~~~~~i 261 (282)
..+|||+|.+. ..+.+.+| +++.++|++++|||||++ ..||+|+|++|+..||..|+.+|+.+ + ..++..+++
T Consensus 11 ~~~rL~~v~G~-~~~~~~eV---~~~~ssLns~D~FILd~g-~~iyvW~G~~ss~~Ek~~A~~~a~~i-~-~er~g~~~i 83 (114)
T 1svq_A 11 YKPRLLHISGD-KNAKVAEV---PLATSSLNSGDCFLLDAG-LTIYQFNGSKSSPQEKNKAAEVARAI-D-AERKGLPKV 83 (114)
T ss_dssp CCEEEEEEECT-TSCEEEEE---CCCSSSCCTTSEEEEEET-TEEEECCCTTCCHHHHHHHHHHHHHH-H-HHHTTCSEE
T ss_pred CCcEEEEEECC-CcEEEEEe---cCCHHHcCCCCeEEEecC-CEEEEEeCCCCCHHHHHHHHHHHHHh-h-hccCCCccE
Confidence 46899999976 67888899 799999999999999999 89999999999999999999999986 4 233335689
Q ss_pred EEecCCC--CChhhhh
Q psy8088 262 GEIKTSL--EVWAEEK 275 (282)
Q Consensus 262 ~~v~eG~--Ep~~F~~ 275 (282)
.+|.||. ||..|-+
T Consensus 84 ~vv~eg~~~E~~~Fw~ 99 (114)
T 1svq_A 84 EVFCETDSDIPAEFWK 99 (114)
T ss_dssp EECCCCTTCCCHHHHH
T ss_pred EEEeCCCcCCcHHHHH
Confidence 9999999 9999954
No 16
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=99.42 E-value=4e-14 Score=113.02 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=52.3
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCC
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINA 62 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~ 62 (282)
..++|+++++||+ .++|.|+|+|++|| |++||+||+++|+|++||++|+|+|++++.
T Consensus 74 ~g~Aa~~aveLd~--~lgg~~vq~R~~QG~Ep~~Fl~~F~~~iii~~Gg~~s~~k~~et~~ 132 (147)
T 1t44_G 74 SGAAAIFTVQLDD--YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVETQE 132 (147)
T ss_dssp HHHHHHHHHHHHH--HTTTCCEEEEEETTCCCHHHHTTCTTCCEEESCCCCCCCBCCCCEE
T ss_pred HHHHHHHHHHHHH--HcCCCceEEEEECCCCCHHHHHHhCCCeEEEeCCcccccceecccc
Confidence 4567799999999 58999999999999 999999999999999999999999998764
No 17
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=99.35 E-value=2.4e-13 Score=108.44 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=48.7
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeee
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHV 58 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~ 58 (282)
..++|++++++|+ .++|.|+|+||+|| |++||+||+++|+|++||++|||+||
T Consensus 96 ~gaAA~~aveLd~--~lgg~~vQ~Re~QG~Ep~~Fl~lFkg~iii~~GG~~Sgf~~v 150 (150)
T 2ff3_A 96 SGAAAIFTVQLDD--YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHV 150 (150)
T ss_dssp HHHHHHHHHHHHH--HTTTCCEEEEEETTCCCHHHHHTCTTCCEEESCCCCCCCBCC
T ss_pred HHHHHHHHHHHHH--HcCCCceEEEeECCCCCHHHHHHhcCCeEEEeCCcCCccccC
Confidence 4567799999999 57999999999999 99999999999999999999999875
No 18
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=99.30 E-value=3.9e-13 Score=104.63 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=46.8
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCe
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFN 56 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~ 56 (282)
..++|++++++|+ .++|.|+|+||+|| |++||+||+++|+|++||++|||+
T Consensus 74 ~g~Aa~~aveLd~--~lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg~~sgf~ 126 (126)
T 2vik_A 74 QGAAAIYTTQMDE--YLGSVAVQHREVQGHESETFRAYFKQGLIYKQGGVASGMK 126 (126)
T ss_dssp HHHHHHHHHHHHH--HTTSCSCEEEEETTTSHHHHHHHCSSCCCCCCSCTTCSCC
T ss_pred HHHHHHHHHHHHH--HcCCCccEEEEECCCCCHHHHHHcCCCeEEEECcccCCCC
Confidence 4567799999999 47999999999999 999999999999999999999984
No 19
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=99.30 E-value=6.4e-13 Score=103.66 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=46.1
Q ss_pred hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCC
Q psy8088 4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGF 55 (282)
Q Consensus 4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f 55 (282)
..++|++++++|+ .++|.|+|+||+|| |++||+||+++|+|++||++|||
T Consensus 77 ~g~Aa~~aveLd~--~lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg~~sgf 128 (128)
T 3cip_G 77 SGAAAIFTVQLDD--YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 128 (128)
T ss_dssp HHHHHHHHHHHHH--HTTTCEEEEEEETTCCCHHHHTTCTTCCEEESCCCCCCC
T ss_pred HHHHHHHHHHHHH--HcCCCceEEEeECCCCCHHHHHHhCCCeEEEECCcCCCC
Confidence 4557799999999 57999999999999 99999999999999999999987
No 20
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=99.28 E-value=9e-12 Score=110.33 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=74.5
Q ss_pred cceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec------CC---eEEEEeCCCCCHHHHHHHHHHHHHhccccCCCc
Q psy8088 65 EKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT------GR---EVLVYVGSKAARTERLKAISVANQIRDQDHNGR 134 (282)
Q Consensus 65 ~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~------~~---~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~ 134 (282)
...+|||.+ ..+++||. ..+.|.++||||+.. +. .||+|+|++|+.+++..|+.+|..|.+ ..+|+
T Consensus 34 Gl~iWrIe~---~~~~~v~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~-~lgg~ 109 (297)
T 3tu5_B 34 GLQIWRVEK---FDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD-YLNGR 109 (297)
T ss_dssp EEEEEEEET---TEEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTTC
T ss_pred ceEEEEEcC---CEEEECCHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHH-HcCCC
Confidence 467888874 45667865 579999999999962 22 799999999999999999999999986 45676
Q ss_pred ceEEEecCCCCCcchhHHHHHhCCCCCCCCCCCCCCCCChhhh--ccccccceEEEEECCCCCeEEEEeecccCCccccC
Q psy8088 135 ATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFE--TKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLN 212 (282)
Q Consensus 135 ~~v~~v~e~~~g~E~~~F~~~lg~g~~~~~~~~~~~~~d~~~~--~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~ 212 (282)
+....+.| |.|+++|..+|. +...|.... ....+. ......+|++++....+... ..+ .++.-.++
T Consensus 110 ~vq~Re~Q---g~Es~~Fl~~F~-~~i~~~~GG----~~sgf~~v~~~~~~~r~~rl~~~e~~~~-r~~---~ls~vs~~ 177 (297)
T 3tu5_B 110 AVQHREVQ---GFESATFLGYFK-SGLKYKKGG----VASKLRKVAEQTSEGRPKKPSYVEAESE-RSA---LLAAIRGH 177 (297)
T ss_dssp CEEEEEET---TCCCHHHHTTCT-TCCEEESCC----CCCCCBCCCCCC-------------------------------
T ss_pred ceEEEEeC---CcCCHHHHHHhc-cCcEEecCC----CCCCCceecccCCCCcccceeeeecccc-ccc---eeeEEecc
Confidence 54445557 899999999998 433332211 111111 11223445555543222211 122 56777899
Q ss_pred CCCEEEEecCCCeEEEEecC
Q psy8088 213 QGDTFILDTVTSGIYVWIGK 232 (282)
Q Consensus 213 s~~vfILD~g~~~iyvW~G~ 232 (282)
+.+|||+|.+ ..+|.|.++
T Consensus 178 ~Gd~fi~Dv~-~~A~q~le~ 196 (297)
T 3tu5_B 178 SGTLSLRKVS-SLASEELQS 196 (297)
T ss_dssp --------------------
T ss_pred CCceeecccc-HHHHHHHHH
Confidence 9999999999 899999764
No 21
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=99.07 E-value=7.8e-10 Score=86.14 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred CcceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCC
Q psy8088 64 GEKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT------G---REVLVYVGSKAARTERLKAISVANQIRDQDHNG 133 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~------~---~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g 133 (282)
....+|||.+- ..++||. ....|.++||||+.. + ..||+|+|++|+.+|+..|+.+|..|.+ ..+|
T Consensus 18 ~gl~vWrIe~~---~~~~vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~-~lgg 93 (128)
T 3cip_G 18 PGLQIWRVEKF---DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD-YLNG 93 (128)
T ss_dssp SEEEEEEEETT---EEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTT
T ss_pred CCeEEEEEeCC---EEEECChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHH-HcCC
Confidence 35678999865 4667765 579999999999863 2 2699999999999999999999999986 4667
Q ss_pred cceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088 134 RATVSIIDENSSPVEVTRFFTELGSGSN 161 (282)
Q Consensus 134 ~~~v~~v~e~~~g~E~~~F~~~lg~g~~ 161 (282)
++....+.| |.||++|.++|+ +..
T Consensus 94 ~~vq~R~~Q---G~E~~~Fl~~F~-~~i 117 (128)
T 3cip_G 94 RAVQHREVQ---GFESATFLGYFK-SGL 117 (128)
T ss_dssp CEEEEEEET---TCCCHHHHTTCT-TCC
T ss_pred CceEEEeEC---CCCCHHHHHHhC-CCe
Confidence 665555667 999999999998 443
No 22
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=99.07 E-value=3.3e-10 Score=90.29 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=72.5
Q ss_pred CcceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCC
Q psy8088 64 GEKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT------G---REVLVYVGSKAARTERLKAISVANQIRDQDHNG 133 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~------~---~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g 133 (282)
....+|+|.+- ..++||. ....|.++||||+.. + ..||+|+|++|+.+|+..|+.+|..|.+ ..+|
T Consensus 37 ~gl~VWrIe~~---~~v~vp~~~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~-~lgg 112 (150)
T 2ff3_A 37 PGLQIWRVEKF---DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD-YLNG 112 (150)
T ss_dssp SEEEEEEEETT---EEEECCGGGTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTT
T ss_pred CCeEEEEEeCC---EEEECChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHH-HcCC
Confidence 35678999854 4667765 579999999999853 2 2699999999999999999999999986 4667
Q ss_pred cceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088 134 RATVSIIDENSSPVEVTRFFTELGSGSN 161 (282)
Q Consensus 134 ~~~v~~v~e~~~g~E~~~F~~~lg~g~~ 161 (282)
++....+.| |.||+.|.++|+ +..
T Consensus 113 ~~vQ~Re~Q---G~Ep~~Fl~lFk-g~i 136 (150)
T 2ff3_A 113 RAVQHREVQ---GFESATFLGYFK-SGL 136 (150)
T ss_dssp CCEEEEEET---TCCCHHHHHTCT-TCC
T ss_pred CceEEEeEC---CCCCHHHHHHhc-CCe
Confidence 665555667 999999999998 443
No 23
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=99.04 E-value=7.4e-10 Score=86.03 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=72.5
Q ss_pred CcceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec-----C---CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCc
Q psy8088 64 GEKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT-----G---REVLVYVGSKAARTERLKAISVANQIRDQDHNGR 134 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~-----~---~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~ 134 (282)
....+|||.+-+ .++||. ....|.++||||+.. + ..||+|+|++|+.+++..|+.+|..|.+ ..+|.
T Consensus 16 ~~l~vWrIe~~~---~~~vp~~~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~-~lgg~ 91 (126)
T 2vik_A 16 PGIQIWRIENME---MVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDE-YLGSV 91 (126)
T ss_dssp CEEEEEECGGGS---CCEECTTTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHH-HTTSC
T ss_pred CCEEEEEEeCCE---EEECChhhcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHH-HcCCC
Confidence 456788888653 456765 579999999999963 2 2799999999999999999999999986 46676
Q ss_pred ceEEEecCCCCCcchhHHHHHhCCCCCCC
Q psy8088 135 ATVSIIDENSSPVEVTRFFTELGSGSNNQ 163 (282)
Q Consensus 135 ~~v~~v~e~~~g~E~~~F~~~lg~g~~~~ 163 (282)
+....+.| |.||++|.++|+ +...+
T Consensus 92 ~vq~R~~Q---G~E~~~Fl~~F~-~~iii 116 (126)
T 2vik_A 92 AVQHREVQ---GHESETFRAYFK-QGLIY 116 (126)
T ss_dssp SCEEEEET---TTSHHHHHHHCS-SCCCC
T ss_pred ccEEEEEC---CCCCHHHHHHcC-CCeEE
Confidence 64445667 999999999998 44333
No 24
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=99.01 E-value=1.8e-09 Score=86.09 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=71.5
Q ss_pred CcceEEEEEeCccEEEEEeec-ccccCCCCCeEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHhccccCCC
Q psy8088 64 GEKKLYQIKGKKNIRVRQVAL-SVGSMNKGDCFALDT------G---REVLVYVGSKAARTERLKAISVANQIRDQDHNG 133 (282)
Q Consensus 64 ~~~rL~~v~G~~~~~~~eV~~-~~~sL~s~d~fIld~------~---~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g 133 (282)
....+|||.+- ..++||. ..+.|.++||||+.. + ..||+|+|++|+.+++..|+.+|..|.+ ..+|
T Consensus 15 ~gl~VWrIe~~---~~~~vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~-~lgg 90 (147)
T 1t44_G 15 PGLQIWRVEKF---DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD-YLNG 90 (147)
T ss_dssp SEEEEEEEETT---EEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTT
T ss_pred CCeEEEEEeCC---EEEECChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHH-HcCC
Confidence 35678999854 4667765 579999999999863 2 2699999999999999999999999986 4667
Q ss_pred cceEEEecCCCCCcchhHHHHHhC
Q psy8088 134 RATVSIIDENSSPVEVTRFFTELG 157 (282)
Q Consensus 134 ~~~v~~v~e~~~g~E~~~F~~~lg 157 (282)
.+....+.| |.||++|.++|+
T Consensus 91 ~~vq~R~~Q---G~Ep~~Fl~~F~ 111 (147)
T 1t44_G 91 RAVQHREVQ---GFESATFLGYFK 111 (147)
T ss_dssp CCEEEEEET---TCCCHHHHTTCT
T ss_pred CceEEEEEC---CCCCHHHHHHhC
Confidence 665555667 999999999998
No 25
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=96.53 E-value=0.01 Score=59.04 Aligned_cols=85 Identities=12% Similarity=0.277 Sum_probs=55.9
Q ss_pred ccceEEEEECCC-CCe-EEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHH--------------------
Q psy8088 182 KAVKLYKISDAS-GNV-KSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK-------------------- 239 (282)
Q Consensus 182 ~~~rLy~vs~~~-g~~-~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er-------------------- 239 (282)
-.|+||.+.+-. ... .-..+ +++.+.|.++.+||||+| ..||+|+|+.+++.--
T Consensus 619 iyP~L~~~h~~~~~~~~~P~~v---~ls~~~l~~~giyLlD~g-~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp 694 (766)
T 3eh2_A 619 FYPRLLPLTKSPVESTTEPPAV---RASEERLSNGDIYLLENG-LNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLP 694 (766)
T ss_dssp HSCEEEECSSCCCSCC--CCCB---CSSGGGCCTTCEEEEECS-SEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCC
T ss_pred HhheEEEeecCCcccccCCCCc---CCcHHHcCCCcEEEEEcC-cEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCC
Confidence 478999985311 111 11123 688999999999999999 8999999999876521
Q ss_pred ------HHHHHHHHHHHHcCCCCCcceEEEecCCCCChh
Q psy8088 240 ------VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWA 272 (282)
Q Consensus 240 ------~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~ 272 (282)
..-+....+.++. .++...++.+|.+| .+..
T Consensus 695 ~~~~~~s~~vr~ii~~lr~-~~~~~~~l~ivr~~-~~~~ 731 (766)
T 3eh2_A 695 VLDNPLSKKVRGLIDSLRA-QRSRYMKLTVVKQE-DKME 731 (766)
T ss_dssp CCSSHHHHHHHHHHHHHHT-TSSSCCEEEEEESS-SSTH
T ss_pred CCCCHHHHHHHHHHHHHHH-hCCCCceEEEEeCC-CChH
Confidence 1112222333444 34567899999988 5544
No 26
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=95.85 E-value=0.036 Score=55.17 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=55.1
Q ss_pred ccceEEEEECCCCC--eEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHHHH------------------
Q psy8088 182 KAVKLYKISDASGN--VKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVE------------------ 241 (282)
Q Consensus 182 ~~~rLy~vs~~~g~--~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er~~------------------ 241 (282)
-.|+||.+.+-... ..-..| +++.+.|.++.+||||+| ..||+|+|+.+++.-..-
T Consensus 623 iyP~L~~~h~l~~~~~~~P~~v---~ls~~~l~~~giyLLD~g-~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp 698 (770)
T 3efo_B 623 FYPQLLPIHTLDVKSTMLPAAV---RCSESRLSEEGIFLLANG-LHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLP 698 (770)
T ss_dssp HSCEEEECTTCCSSSCSCCCCC---CSSGGGCCTTCEEEEECS-SEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCC
T ss_pred hccceEEEeccccccccCCCCc---CCcHHHcCCCcEEEEECC-cEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCC
Confidence 47899998531111 011123 688999999999999999 899999999987654221
Q ss_pred --------HHHHHHHHHHcCCCCCcceEEEecCCCCCh
Q psy8088 242 --------GLKRGQAFLTNNNYPAWTKTGEIKTSLEVW 271 (282)
Q Consensus 242 --------a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~ 271 (282)
-+..-.+.++.. |+...++.+|.+| ++.
T Consensus 699 ~~~~~~s~~vr~ii~~lr~~-r~~~~~l~ivr~~-~~~ 734 (770)
T 3efo_B 699 EVGNPYSQQLRMIMGIIQQK-RPYSMKLTIVKQR-EQP 734 (770)
T ss_dssp CCCSSHHHHHHHHHHHHHTT-CSSCCEEEEEEST-TST
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCCccEEEEeCC-CCh
Confidence 112222334433 4567899999998 443
No 27
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=94.67 E-value=0.077 Score=52.81 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=54.5
Q ss_pred ccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCH---------HH----H---HHHHHH
Q psy8088 182 KAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTT---------AE----K---VEGLKR 245 (282)
Q Consensus 182 ~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~---------~e----r---~~a~~~ 245 (282)
-.|+||.+... |. .+.+ +++.+.|.++.+||||+| ..||||+|..+.. .+ + .+....
T Consensus 623 iyP~L~~~~~~-~~--P~~v---~ls~~~l~~~gi~LLD~g-~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~ 695 (769)
T 2nut_A 623 IQPILYAYSFS-GP--PEPV---LLDSSSILADRILLMDTF-FQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDD 695 (769)
T ss_dssp HSCEEEEECSS-SS--CEEC---CSSGGGCCTTCEEEEECS-SEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHH
T ss_pred hcCEEEeccCC-CC--CCce---eCCHHHccCCCEEEEECC-CEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHH
Confidence 36899998763 32 2345 799999999999999999 8999999976532 10 1 123345
Q ss_pred HHHHHHcCCCCCcceEEEecCCCCChhh
Q psy8088 246 GQAFLTNNNYPAWTKTGEIKTSLEVWAE 273 (282)
Q Consensus 246 A~~~~~~~~~~~~~~i~~v~eG~Ep~~F 273 (282)
|+++++.+ .| -..+..+.+|.--+.|
T Consensus 696 a~~i~~~R-~p-~Pr~i~~~~g~sqaRf 721 (769)
T 2nut_A 696 AQEILHSR-FP-MPRYIDTEHGGSQARF 721 (769)
T ss_dssp HHHHHHHS-SS-CCEEEEEETTCSTTHH
T ss_pred HHHHHhcC-CC-CCeEEEEcCCCcHHHH
Confidence 66655543 33 2346666766544444
No 28
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.24 E-value=0.1 Score=51.87 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=54.6
Q ss_pred ccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCH------------HH-H---HHHHHH
Q psy8088 182 KAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTT------------AE-K---VEGLKR 245 (282)
Q Consensus 182 ~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~------------~e-r---~~a~~~ 245 (282)
-.|+||.+... |. .+.+ +++.+.|.++.+||||+| ..||||+|..+.. +. + .....-
T Consensus 625 iyP~L~~~~~~-~~--P~~v---~Ls~~~l~~~gi~LLD~g-~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~ 697 (768)
T 1m2o_A 625 IQPTLTSFSME-DD--PQPV---LLDSISVKPNTILLLDTF-FFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLE 697 (768)
T ss_dssp HSCEEEEECSS-SC--CEEC---CSBGGGCCTTCEEEEECS-SEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHH
T ss_pred hCCeEEEecCC-CC--Ccce---eCcHHHcCCCCEEEEECC-CEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHH
Confidence 36899998753 32 2345 799999999999999999 8999999975532 11 1 112234
Q ss_pred HHHHHHcCCCCCcceEEEecCCCCChhhh
Q psy8088 246 GQAFLTNNNYPAWTKTGEIKTSLEVWAEE 274 (282)
Q Consensus 246 A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~ 274 (282)
|+++++.+ .| -..+.++.+|.-.+.|-
T Consensus 698 a~~i~~~R-~p-~Pr~i~~~~~~sqarfl 724 (768)
T 1m2o_A 698 AAELLVDR-FP-LPRFIDTEAGGSQARFL 724 (768)
T ss_dssp HHHHHHTC-SS-CCEEEEEETTCGGGHHH
T ss_pred HHHHHhcC-CC-CceEEEECCCCcHHHHH
Confidence 66666542 33 22466667766555553
No 29
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=94.16 E-value=0.16 Score=50.42 Aligned_cols=77 Identities=14% Similarity=0.325 Sum_probs=55.6
Q ss_pred cceEEEEEeC--cc-EEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHH---------------------------
Q psy8088 65 EKKLYQIKGK--KN-IRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAART--------------------------- 114 (282)
Q Consensus 65 ~~rL~~v~G~--~~-~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~--------------------------- 114 (282)
.|+||.+.-- .. ..-..|+++..+|.++.+|+||++..||+|.|+..++.
T Consensus 620 yP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~ 699 (766)
T 3eh2_A 620 YPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNP 699 (766)
T ss_dssp SCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSH
T ss_pred hheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCH
Confidence 5889988621 11 12234678999999999999999999999999999775
Q ss_pred HHHHHHHHHHHhccccCCCcceEEEecC
Q psy8088 115 ERLKAISVANQIRDQDHNGRATVSIIDE 142 (282)
Q Consensus 115 er~~A~~~a~~l~~~e~~g~~~v~~v~e 142 (282)
.-.+...+...|+. .+.....+.+|.+
T Consensus 700 ~s~~vr~ii~~lr~-~~~~~~~l~ivr~ 726 (766)
T 3eh2_A 700 LSKKVRGLIDSLRA-QRSRYMKLTVVKQ 726 (766)
T ss_dssp HHHHHHHHHHHHHT-TSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHH-hCCCCceEEEEeC
Confidence 13455666667765 3444467888887
No 30
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=93.93 E-value=0.052 Score=53.85 Aligned_cols=55 Identities=27% Similarity=0.573 Sum_probs=38.4
Q ss_pred ccceEEEEEC--CCCCeEEE--Eeec---ccCCccccCCCCEEEEecCCCeEEEEecCCCCHH
Q psy8088 182 KAVKLYKISD--ASGNVKSE--LIEQ---IPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTA 237 (282)
Q Consensus 182 ~~~rLy~vs~--~~g~~~~~--ev~~---~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~ 237 (282)
-.|+||.+.+ ..|.+... .+.. -+++.+.|.++.+||||+| ..||+|+|+.+++.
T Consensus 600 iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g-~~i~lw~G~~v~~~ 661 (751)
T 3eh1_A 600 IHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCG-SVFYIWVGKGCDNN 661 (751)
T ss_dssp HSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECS-SEEEEEECTTCCHH
T ss_pred ccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECC-CEEEEEECCCCCHH
Confidence 4789999863 12322211 0100 0458889999999999999 89999999998754
No 31
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=93.61 E-value=0.18 Score=50.19 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=54.1
Q ss_pred cceEEEEEe---CccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHH--------------------------
Q psy8088 65 EKKLYQIKG---KKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTE-------------------------- 115 (282)
Q Consensus 65 ~~rL~~v~G---~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~e-------------------------- 115 (282)
.|+||.+.- .....-..|+++..+|.++.+|+||++..||+|.|+..++.-
T Consensus 624 yP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~ 703 (770)
T 3efo_B 624 YPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNP 703 (770)
T ss_dssp SCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSS
T ss_pred ccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCH
Confidence 578988852 111112346789999999999999999999999999988743
Q ss_pred -HHHHHHHHHHhccccCCCcceEEEecC
Q psy8088 116 -RLKAISVANQIRDQDHNGRATVSIIDE 142 (282)
Q Consensus 116 -r~~A~~~a~~l~~~e~~g~~~v~~v~e 142 (282)
-.+...+...|+. .+.....+.+|.+
T Consensus 704 ~s~~vr~ii~~lr~-~r~~~~~l~ivr~ 730 (770)
T 3efo_B 704 YSQQLRMIMGIIQQ-KRPYSMKLTIVKQ 730 (770)
T ss_dssp HHHHHHHHHHHHHT-TCSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHH-hCCCCccEEEEeC
Confidence 2344556666654 2334457778877
No 32
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=93.39 E-value=0.25 Score=49.02 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=43.9
Q ss_pred ecccccCCCCCeEEEecCCeEEEEeCCCCCHH---------------------------HHHHHHHHHHHhccccCCCcc
Q psy8088 83 ALSVGSMNKGDCFALDTGREVLVYVGSKAART---------------------------ERLKAISVANQIRDQDHNGRA 135 (282)
Q Consensus 83 ~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~---------------------------er~~A~~~a~~l~~~e~~g~~ 135 (282)
+++..+|..+.+|+||++..||+|.|+.+++. .-.+...+...|+. .+.-..
T Consensus 630 ~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~-~r~~~~ 708 (751)
T 3eh1_A 630 KLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRD-SRPLSP 708 (751)
T ss_dssp CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHH-TSSSCC
T ss_pred cCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHh-cCCCcc
Confidence 45888999999999999999999999998763 23455566666664 343335
Q ss_pred eEEEecC
Q psy8088 136 TVSIIDE 142 (282)
Q Consensus 136 ~v~~v~e 142 (282)
.+.++.+
T Consensus 709 ~l~vvr~ 715 (751)
T 3eh1_A 709 ILHIVKD 715 (751)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 6777777
No 33
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=92.76 E-value=0.096 Score=52.43 Aligned_cols=32 Identities=16% Similarity=0.509 Sum_probs=29.3
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCHH
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTA 237 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~ 237 (282)
+++.+.|+++.+||||+| ..||+|+|+.+++.
T Consensus 672 ~Ls~~~l~~~g~yLld~G-~~i~lwvg~~~~~~ 703 (810)
T 1pcx_A 672 NATSSLFERYGLYLIDNG-NELFLWMGGDAVPA 703 (810)
T ss_dssp CSSTTSCCTTCEEEEECS-SEEEEEECTTCCHH
T ss_pred cCCHHHhCcCCEEEEECC-CEEEEEeCCCCCHH
Confidence 688899999999999999 89999999998754
No 34
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=92.65 E-value=0.19 Score=49.96 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred cceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCH---------HH----HH---HHHHHHHHhcc
Q psy8088 65 EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAAR---------TE----RL---KAISVANQIRD 128 (282)
Q Consensus 65 ~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~---------~e----r~---~A~~~a~~l~~ 128 (282)
.|+||.+.-... ...|+++..+|.++.+|+||++..||+|.|+.... .+ +. .....|+.|..
T Consensus 624 yP~L~~~~~~~~--P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~i~~ 701 (769)
T 2nut_A 624 QPILYAYSFSGP--PEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILH 701 (769)
T ss_dssp SCEEEEECSSSS--CEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEeccCCCC--CCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHHHHh
Confidence 488998874322 34688999999999999999999999999975532 11 11 12345666654
Q ss_pred ccCCCcceEEEecCCCCCcchhHHHHHhC
Q psy8088 129 QDHNGRATVSIIDENSSPVEVTRFFTELG 157 (282)
Q Consensus 129 ~e~~g~~~v~~v~e~~~g~E~~~F~~~lg 157 (282)
+|--.+.+++++++ |.+..-|...|.
T Consensus 702 -~R~p~Pr~i~~~~g--~sqaRfl~skln 727 (769)
T 2nut_A 702 -SRFPMPRYIDTEHG--GSQARFLLSKVN 727 (769)
T ss_dssp -HSSSCCEEEEEETT--CSTTHHHHHHCC
T ss_pred -cCCCCCeEEEEcCC--CcHHHHHHHhcC
Confidence 33333567778873 333333444455
No 35
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=91.75 E-value=0.35 Score=48.10 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=37.7
Q ss_pred cceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCC
Q psy8088 65 EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAA 112 (282)
Q Consensus 65 ~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss 112 (282)
.|+||.+.-.. ....|+++..+|..+.+|+||++..||+|.|...+
T Consensus 626 yP~L~~~~~~~--~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~ 671 (768)
T 1m2o_A 626 QPTLTSFSMED--DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIA 671 (768)
T ss_dssp SCEEEEECSSS--CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHH
T ss_pred CCeEEEecCCC--CCcceeCcHHHcCCCCEEEEECCCEEEEEECCcch
Confidence 48898887432 13468899999999999999999999999997553
No 36
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=91.51 E-value=0.11 Score=52.58 Aligned_cols=31 Identities=13% Similarity=0.500 Sum_probs=28.5
Q ss_pred cCCccccCCCCEEEEecCCCeEEEEecCCCCH
Q psy8088 205 PLAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236 (282)
Q Consensus 205 ~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~ 236 (282)
+++.+.|+++.+||||+| ..||+|+|+.+++
T Consensus 788 ~Ls~~~l~~~g~yLld~G-~~i~lWvG~~~~p 818 (926)
T 1m2v_B 788 NATSSLFERYGLYLIDNG-NELFLWMGGDAVP 818 (926)
T ss_dssp CSCSTTCCTTCEEEEECS-SEEEEEECTTCCS
T ss_pred cCcHHHhccCCEEEEECC-CEEEEEecCCCCH
Confidence 688889999999999999 8999999999763
No 37
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=90.71 E-value=0.2 Score=50.13 Aligned_cols=34 Identities=15% Similarity=0.427 Sum_probs=30.9
Q ss_pred EeecccccCCCCCeEEEecCCeEEEEeCCCCCHH
Q psy8088 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAART 114 (282)
Q Consensus 81 eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~ 114 (282)
.++++...|.++.+|+||+|..||+|.|+.+++.
T Consensus 670 ~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~ 703 (810)
T 1pcx_A 670 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPA 703 (810)
T ss_dssp BCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred cccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHH
Confidence 4678999999999999999999999999998853
No 38
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=89.27 E-value=0.22 Score=50.50 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=30.4
Q ss_pred EeecccccCCCCCeEEEecCCeEEEEeCCCCCH
Q psy8088 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAAR 113 (282)
Q Consensus 81 eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~ 113 (282)
.|+++..+|.++.+|||++|..||+|.|+.+++
T Consensus 786 ~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p 818 (926)
T 1m2v_B 786 PINATSSLFERYGLYLIDNGNELFLWMGGDAVP 818 (926)
T ss_dssp CBCSCSTTCCTTCEEEEECSSEEEEEECTTCCS
T ss_pred cccCcHHHhccCCEEEEECCCEEEEEecCCCCH
Confidence 467889999999999999999999999999874
Done!