RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8088
(282 letters)
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS
structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1
d.109.1.1 d.109.1.1 PDB: 1jhw_A
Length = 347
Score = 160 bits (406), Expect = 2e-47
Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 8/221 (3%)
Query: 42 TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
G++Y GGV SGF HV N ++LYQ+KGKKNIR + AL+ S N GDCF LD G+
Sbjct: 112 RGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQ 171
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
+ + G K+ ER KA +A IRD + G+A V I+ + P E LG
Sbjct: 172 NIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAE---MIQVLGPKPA 228
Query: 162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFILD 220
+ + +D + +A LYK+SDA+G + + + P A + L D F+LD
Sbjct: 229 LKEGNPE---EDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLD 285
Query: 221 TVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTK 260
G IY+W G+ + E+ L+ + F++ Y T+
Sbjct: 286 NGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQ 326
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
protein, protein D packing, contractIle protein; 2.50A
{Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A
3ffk_A* 1rgi_G*
Length = 729
Score = 165 bits (418), Expect = 1e-46
Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 9/222 (4%)
Query: 41 CTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTG 100
+G++Y GGVASGF HV N ++L Q+KG++ +R +V +S S N GDCF LD G
Sbjct: 109 KSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLG 168
Query: 101 REVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGS 160
+ + GSK+ R ERLKA V+ IRD + +GRA VS+ +E + P ++
Sbjct: 169 NNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEP----EAMLQVLGPK 224
Query: 161 NNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVK-SELIEQIPLAQKSLNQGDTFIL 219
D + + K KLYK+S+ +G + S + ++ P AQ +L D FIL
Sbjct: 225 PT---LPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFIL 281
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTK 260
D G I+VW GK + E+ LK F++ +YP T+
Sbjct: 282 DHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQ 323
Score = 105 bits (263), Expect = 8e-26
Identities = 53/236 (22%), Positives = 86/236 (36%), Gaps = 27/236 (11%)
Query: 39 FNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKK--NIRVRQVALSVGSMNKGDCFA 96
F + GG + AP +L+Q++ R ++ G++N D F
Sbjct: 486 FGGKPMIVYKGGTSREGGQ---TAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFV 542
Query: 97 LDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTEL 156
L T ++VG+ A+ E+ A + +R Q + E S P F+ L
Sbjct: 543 LKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPV-------QVAEGSEPDS---FWEAL 592
Query: 157 GSGSNNQVADVPYGGDDAEFETKQDKAVK-LYKISDASGNVKSELIEQIPLAQKSLNQGD 215
G Y + K D L+ S+ G E + Q+ L D
Sbjct: 593 GG-------KATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPG-EFMQEDLATDD 644
Query: 216 TFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFL--TNNNYPAWTKTGEIKTSLE 269
+LDT ++VW+GKDS EK E L + ++ + T +K E
Sbjct: 645 VMLLDTW-DQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFE 699
Score = 58.4 bits (140), Expect = 8e-10
Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 32/216 (14%)
Query: 56 NHVDINAPGEKKLYQI-KGKKNIRVRQVA----LSVGSMNKGDCFALDTGREVLVYV--G 108
D KLY++ G + V VA + G++ DCF LD G++ ++V G
Sbjct: 235 VKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 294
Query: 109 SKAARTERLKAISVANQ-IRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADV 167
+A ER A+ A+ I D+ + VS++ E +FF + +
Sbjct: 295 KQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGL 354
Query: 168 PYGGDDAEFETKQD-KAVKLYK----------ISDASGNVKSELIEQ---IPLAQKSLNQ 213
Y + A L+ D +G + +E +P+ + Q
Sbjct: 355 AYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQ 414
Query: 214 ---GDTFIL-------DTVTSGIYVWIGKDSTTAEK 239
GD++I+ IY W G ST E
Sbjct: 415 FYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEV 450
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP:
d.109.1.1 PDB: 1svr_A 1svy_A
Length = 114
Score = 114 bits (286), Expect = 4e-32
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 53 SGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAA 112
SGFNHV + +L I G KN +V +V L+ S+N GDCF LD G + + GSK++
Sbjct: 1 SGFNHVKPTEY-KPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSS 59
Query: 113 RTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
E+ KA VA I D + G V + E S F+ LG
Sbjct: 60 PQEKNKAAEVARAI-DAERKGLPKVEVFCETDSD-IPAEFWKLLG 102
Score = 54.8 bits (132), Expect = 6e-10
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 184 VKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGL 243
+L IS N K + ++PLA SLN GD F+LD IY + G S+ EK +
Sbjct: 13 PRLLHIS-GDKNAK---VAEVPLATSSLNSGDCFLLDA-GLTIYQFNGSKSSPQEKNKAA 67
Query: 244 KRGQAFLTNNNYPAWTKT---GEIKTSLEVW 271
+ +A + + E W
Sbjct: 68 EVARAIDAERKGLPKVEVFCETDSDIPAEFW 98
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding
protein, familial amyloi finnish type, cadmium binding,
metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Length = 104
Score = 112 bits (283), Expect = 6e-32
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 65 EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVAN 124
++L+Q+KG++ +R +V +S S N GDCF LD G + + GS + R ERLKA V+
Sbjct: 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSK 61
Query: 125 QIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDA 174
IRD + +GRA V + +E + P LG +P G +D
Sbjct: 62 GIRDNERSGRARVHVSEEGTEPEA---MLQVLGPK-----PALPAGTEDT 103
Score = 47.5 bits (113), Expect = 2e-07
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 185 KLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLK 244
+L+++ V+ ++P++ +S N GD FILD + I+ W G +S E+++ +
Sbjct: 4 RLFQVK-GRRVVR---ATEVPVSWESFNNGDCFILDLGNN-IHQWCGSNSNRYERLKATQ 58
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
actin-binding, calcium, cytoplasm, cytoskeleton,
structural protein; 2.00A {Homo sapiens}
Length = 398
Score = 116 bits (292), Expect = 2e-30
Identities = 49/233 (21%), Positives = 79/233 (33%), Gaps = 26/233 (11%)
Query: 41 CTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGK--KNIRVRQVALSVGSMNKGDCFALD 98
+ GG + N +L+Q++G N + +V +N D F L
Sbjct: 157 KGRMVVYQGGTSRTNNL---ETGPSTRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLK 213
Query: 99 TGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGS 158
T ++ G + ER A VA+ I + ++ E P F+ LG
Sbjct: 214 TQSCCYLWCGKGCSGDEREMAKMVADTISRTE------KQVVVEGQEP---ANFWMALGG 264
Query: 159 GSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFI 218
PY E +L++ S+ +G E Q L + D F+
Sbjct: 265 -------KAPYANTKRLQEENLVITPRLFECSNKTGRFL--ATEIPDFNQDDLEEDDVFL 315
Query: 219 LDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFL--TNNNYPAWTKTGEIKTSLE 269
LD ++ WIGK + EK Q +L + T +K E
Sbjct: 316 LDVW-DQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGRDPETPIIVVKQGHE 367
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP:
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A
2fh4_A 1h1v_G* 1nph_A
Length = 344
Score = 108 bits (271), Expect = 1e-27
Identities = 55/226 (24%), Positives = 87/226 (38%), Gaps = 27/226 (11%)
Query: 49 GGVASGFNHVDINAPGEKKLYQIKGKK--NIRVRQVALSVGSMNKGDCFALDTGREVLVY 106
GG + AP +L+Q++ R +V G++N D F L T ++
Sbjct: 111 GGTSREGGQ---TAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLW 167
Query: 107 VGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVAD 166
VG+ A+ E+ A + +R Q + E S P F+ LG +
Sbjct: 168 VGTGASEAEKTGAQELLRVLRAQPV-------QVAEGSEPDG---FWEALGGKA------ 211
Query: 167 VPYGGDDAEFETKQDK-AVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSG 225
Y + K D +L+ S+ G E + L Q+ L D +LDT
Sbjct: 212 -AYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPG-ELMQEDLATDDVMLLDTW-DQ 268
Query: 226 IYVWIGKDSTTAEKVEGLKRGQAFL--TNNNYPAWTKTGEIKTSLE 269
++VW+GKDS EK E L + ++ N T +K E
Sbjct: 269 VFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFE 314
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping,
actin-binding, cytos phosphoprotein, actin-binding
protein; 3.00A {Homo sapiens}
Length = 371
Score = 107 bits (268), Expect = 3e-27
Identities = 56/231 (24%), Positives = 86/231 (37%), Gaps = 28/231 (12%)
Query: 44 IRYLPGGVASGFNHVDINAPGEKKLYQIKGKK--NIRVRQVALSVGSMNKGDCFALDTGR 101
I Y G G +L+Q++ R+ +V + S+N D F L +
Sbjct: 148 IIYKNGTSKKGGQAP----APPTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQ 203
Query: 102 E-VLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGS 160
++VG A++ E A VA+ ++ + I E P E F+ LG
Sbjct: 204 NSGYIWVGKGASQEEEKGAEYVASVLKCKTL-------RIQEGEEPEE---FWNSLGG-- 251
Query: 161 NNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILD 220
Y +D +LY S+ +G E I Q L + D +LD
Sbjct: 252 -----KKDYQTSPLLETQAEDHPPRLYGCSNKTGRFVIEEIPG-EFTQDDLAEDDVMLLD 305
Query: 221 TVTSGIYVWIGKDSTTAEKVEGLKRGQAFL--TNNNYPAWTKTGEIKTSLE 269
I++WIGKD+ EK E LK + +L + T IK E
Sbjct: 306 A-WEQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHE 355
Score = 54.5 bits (130), Expect = 9e-09
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 64 GEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFAL----DTGREVLVYVGSKAARTERLKA 119
G+ ++++++ I+V Q S G GDC+ + G+ + + G+ A R E +
Sbjct: 52 GKVEIWRVENNGRIQVDQN--SYGEFYGGDCYIILYTYPRGQIIYTWQGANATRDELTTS 109
Query: 120 ISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETK 179
+ Q+ D+ G+A + + PV + + Y ++ +
Sbjct: 110 AFLTVQL-DRSLGGQAVQIRVSQGKEPVH---LLSLFKDKPL-----IIYKNGTSKKGGQ 160
Query: 180 QDKA-VKLYKISDASGNVKSEL-IEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTA 237
+L+++ N+ S I ++ + SLN D F+L + Y+W+GK ++
Sbjct: 161 APAPPTRLFQVR---RNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE 217
Query: 238 EK 239
E+
Sbjct: 218 EE 219
Score = 51.4 bits (122), Expect = 1e-07
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 65 EKKLYQI---KGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAIS 121
+LY G+ I + + + D LD ++ +++G A E+ +++
Sbjct: 269 PPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK 328
Query: 122 VANQIRDQDHNGR---ATVSIIDENSSPVEVTRFF 153
A + D +GR + II + P T +F
Sbjct: 329 SAKMYLETDPSGRDKRTPIVIIKQGHEPPTFTGWF 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 49/148 (33%)
Query: 1 MSDDD-------R-MSLTTAVSDEEDVESAH----ISPYRAKQTGTAAASFNCTGIRYLP 48
MS + R M++ AV +E S + I+P G AASF+ ++Y+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP------GRVAASFSQEALQYVV 1830
Query: 49 GGVA--SGF-----NHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
V +G+ N+ N + Q + GD ALDT
Sbjct: 1831 ERVGKRTGWLVEIVNY---NVENQ---------------QYVAA------GDLRALDTVT 1866
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQ 129
VL ++ + L+ ++
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 42.0 bits (98), Expect = 2e-04
Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 47/162 (29%)
Query: 121 SVANQIRDQ--DHNGRATVSII--DENSSPVE-VTRF--FT-----ELGSGSNNQVADVP 168
+A+Q+++Q T DE ++P E V +F + G +QV ++
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 169 YGGDDAEFETK--QDK-----AVKLYKISDASGNVKSELIE-----QIPLAQKSLNQGDT 216
EFE + A KL + +D + ELI+ +I + + ++
Sbjct: 88 LT----EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 217 FILDTVTSG---IYVWIGKDSTTAEKVEGLKRGQAFLTNNNY 255
+ V G + G GQ ++Y
Sbjct: 144 ALFRAVGEGNAQLVAIFG--------------GQG--NTDDY 169
Score = 30.0 bits (67), Expect = 1.2
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 199 ELIEQIPLAQKSLNQGDTFILDTVTSGIYVW----IGKDSTTAEKV-EGLKRGQAFLTNN 253
+L + AQ N+ D DT Y + I ++ + G ++G+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDT-----YGFSILDIVINNPVNLTIHFGGEKGKR--IRE 1686
Query: 254 NYPA 257
NY A
Sbjct: 1687 NYSA 1690
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin
beta-4; structural protein; HET: ATP; 2.00A {Homo
sapiens} SCOP: d.109.1.1
Length = 147
Score = 38.8 bits (90), Expect = 4e-04
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 27 YRAKQTGTAAASFNC--TGIRYLPGGVASGFNHVDINA----PGEKKLYQIK 72
+R Q +A +G++Y GGVASGF HV+ P ++ + Q K
Sbjct: 95 HREVQGFESATFLGYFKSGLKYKKGGVASGFKHVETQEKNPLPSKETIEQEK 146
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle
protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP:
d.109.1.1 PDB: 2ff6_G*
Length = 150
Score = 35.0 bits (80), Expect = 0.009
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 43 GIRYLPGGVASGFNHV 58
G++Y GGVASGF HV
Sbjct: 135 GLKYKKGGVASGFKHV 150
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 31.7 bits (71), Expect = 0.31
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKA 111
+ + + + +D G E+ +++G A
Sbjct: 786 PINATSSLFERYGLYLIDNGNELFLWMGGDA 816
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl
histidine, ATP-binding, cytoskeleton, nucleotide-BIN
phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP:
d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A*
1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S*
1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S*
3a5o_S*
Length = 128
Score = 28.7 bits (64), Expect = 1.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 43 GIRYLPGGVASGF 55
G++Y GGVASGF
Sbjct: 116 GLKYKKGGVASGF 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 19/42 (45%)
Query: 238 EKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEAL 279
EK + LK+ ++ SL+++A++ AL
Sbjct: 18 EK-QALKK------------------LQASLKLYADDSAPAL 40
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 150 TRFFTELGSGSNNQVADVPYGGDDAEFET 178
E +GS+ V D P+GG ++
Sbjct: 136 VFTLKEYVTGSHGDVLD-PFGGSIDIYKQ 163
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 28.7 bits (63), Expect = 2.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 81 QVALSVGSMNKGDCFALDTGREVLVYVGSKAA 112
V S ++ GD + L+ G + ++VG+
Sbjct: 639 AVRASEERLSNGDIYLLENGLNLFLWVGASVQ 670
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding
protein, cytoskeletal protein; NMR {Gallus gallus} SCOP:
d.109.1.1 PDB: 2vil_A
Length = 126
Score = 27.7 bits (61), Expect = 2.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 43 GIRYLPGGVASGF 55
G+ Y GGVASG
Sbjct: 113 GLIYKQGGVASGM 125
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 28.3 bits (62), Expect = 3.3
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 63 PGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAA 112
P ++ + K + V S +++ F L G + +++G +
Sbjct: 625 PQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSP 674
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase;
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
1u2q_A
Length = 163
Score = 26.3 bits (59), Expect = 9.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 147 VEVTRFFTELGSGSNNQVADVPYGGDDAEFET 178
V + R F V D PY GD ++FE
Sbjct: 107 VRMLRSFDPRSGTHALDVED-PYYGDHSDFEE 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.359
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,129,435
Number of extensions: 241761
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 29
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)