RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8088
(282 letters)
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 108 bits (272), Expect = 2e-30
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 55 FNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAART 114
F HV N ++LYQ+KGKKNIR + AL+ S N GDCF LD G+ + + G K+
Sbjct: 1 FKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNIL 60
Query: 115 ERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGS 158
ER KA +A IRD + G+A V I+ + P E LG
Sbjct: 61 ERNKARDLALAIRDSERQGKAQVEIVTDGEEPAE---MIQVLGP 101
Score = 56.1 bits (135), Expect = 7e-11
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 177 ETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTT 236
+ +LY++ N++ + L S N GD FILD + I+ W G S
Sbjct: 5 VPNEVVVQRLYQVK-GKKNIR---ATERALNWDSFNTGDCFILDLGQN-IFAWCGGKSNI 59
Query: 237 AEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLE 269
E+ + A ++ + + E
Sbjct: 60 LERNKARDLALAIR-DSERQGKAQVEIVTDGEE 91
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 99 bits (249), Expect = 3e-27
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 66 KKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQ 125
++L+Q+KG++ +R +V +S S N GDCF LD G + + GS + R ERLKA V+
Sbjct: 3 QRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62
Query: 126 IRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDA 174
IRD + +GRA V + +E + P LG +P G +D
Sbjct: 63 IRDNERSGRARVHVSEEGTEPEA---MLQVLGPKP-----ALPAGTEDT 103
Score = 52.2 bits (125), Expect = 1e-09
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 185 KLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLK 244
+L+++ V+ ++P++ +S N GD FILD + I+ W G +S E+++ +
Sbjct: 4 RLFQVKG-RRVVR---ATEVPVSWESFNNGDCFILDL-GNNIHQWCGSNSNRYERLKATQ 58
Query: 245 RGQAFLTNNNYPAWTKTGEIKTSLE 269
+ + +N + + E
Sbjct: 59 VSK-GIRDNERSGRARVHVSEEGTE 82
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum
[TaxId: 44689]}
Length = 102
Score = 86.9 bits (215), Expect = 2e-22
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 65 EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVAN 124
+ +L I G KN +V +V L+ S+N GDCF LD G + + GSK++ E+ KA VA
Sbjct: 3 KPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVAR 62
Query: 125 QIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
I D + G V + E S F+ LG
Sbjct: 63 AI-DAERKGLPKVEVFCETDSD-IPAEFWKLLG 93
Score = 59.1 bits (143), Expect = 5e-12
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 185 KLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLK 244
+L IS N K + ++PLA SLN GD F+LD IY + G S+ EK + +
Sbjct: 5 RLLHIS-GDKNAK---VAEVPLATSSLNSGDCFLLDA-GLTIYQFNGSKSSPQEKNKAAE 59
Query: 245 RGQAFLTNNNYPAWTKTGEIKTSLE 269
+A + S
Sbjct: 60 VARAIDAERKGLPKVEVFCETDSDI 84
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 78.4 bits (193), Expect = 3e-19
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 63 PGEKKLYQIKGKK--NIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAI 120
P +L+Q++ R +V G++N D F L T ++VG+ A+ E+ A
Sbjct: 1 PASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQ 60
Query: 121 SVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
+ +R Q + E S P F+ LG
Sbjct: 61 ELLRVLRAQ-------PVQVAEGSEPDG---FWEALG 87
Score = 51.4 bits (123), Expect = 3e-09
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 184 VKLYKI-SDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEG 242
+L+++ ++++G + ++ +LN D F+L T S Y+W+G ++ AEK
Sbjct: 4 TRLFQVRANSAGATR---AVEVLPKAGALNSNDAFVLKT-PSAAYLWVGTGASEAEKTGA 59
Query: 243 LKRGQAFLTN 252
+ +
Sbjct: 60 QELLRVLRAQ 69
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 73.9 bits (181), Expect = 2e-17
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 177 ETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFILDTV-TSGIYVWIGKDS 234
+ +A LYK+SDA+G + + + P A + L D F+LD IY+W G+ +
Sbjct: 1 DKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKA 60
Query: 235 TTAEKVEGLKRGQAFLTNNNYPAWTKTGEIK 265
E+ L+ + F++ Y T+ +
Sbjct: 61 NEKERQAALQVAEGFISRMQYAPNTQVEILP 91
Score = 61.2 bits (148), Expect = 9e-13
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 65 EKKLYQIK-GKKNIRVRQVA----LSVGSMNKGDCFALDTGREVLVYV--GSKAARTERL 117
LY++ + + +VA ++ + DCF LD G +Y+ G KA ER
Sbjct: 7 AAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQ 66
Query: 118 KAISVANQ-IRDQDHNGRATVSIIDENSSPVEVTRFF 153
A+ VA I + V I+ + +FF
Sbjct: 67 AALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFF 103
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus)
[TaxId: 9796]}
Length = 121
Score = 70.8 bits (173), Expect = 4e-16
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 172 DDAEFETKQDKAVKLYKISDASGNVKSELIE-QIPLAQKSLNQGDTFILDTV-TSGIYVW 229
+DA K KLYK+S+ +G + L+ + P AQ +L D FILD I+VW
Sbjct: 1 EDAANR----KLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVW 56
Query: 230 IGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLE 269
GK + E+ LK F++ +YP T+ + E
Sbjct: 57 KGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGE 96
Score = 62.7 bits (152), Expect = 3e-13
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 67 KLYQIK-GKKNIRVRQVA----LSVGSMNKGDCFALDTGREVLVYV--GSKAARTERLKA 119
KLY++ G + V VA + G++ DCF LD G++ ++V G +A ER A
Sbjct: 10 KLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAA 69
Query: 120 ISVANQ-IRDQDHNGRATVSIIDENSSPVEVTRFF 153
+ A+ I D+ + VS++ E +FF
Sbjct: 70 LKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFF 104
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 61.2 bits (148), Expect = 1e-12
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 67 KLYQI---KGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVA 123
+L+ G+ I L + D LDT +V V+VG + E+ +A++ A
Sbjct: 13 RLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSA 72
Query: 124 NQIRDQDHNGR---ATVSIIDENSSPVEVTRFF 153
+ + D R ++++ + P +F
Sbjct: 73 KRYIETDPANRDRRTPITVVKQGFEPPSFVGWF 105
Score = 60.5 bits (146), Expect = 2e-12
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 177 ETKQDK-AVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDST 235
+ K D +L+ S+ G E + L Q+ L D +LDT ++VW+GKDS
Sbjct: 4 DKKMDAHPPRLFACSNKIGRFVIEEVPG-ELMQEDLATDDVMLLDT-WDQVFVWVGKDSQ 61
Query: 236 TAEKVEGLKRGQAFL--TNNNYPAWTKTGEIKTSLE 269
EK E L + ++ N T +K E
Sbjct: 62 EEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFE 97
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 157
Score = 29.1 bits (64), Expect = 0.37
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 128 DQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFE 177
+ N R ++ + + D PY G+DA+FE
Sbjct: 91 MDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIED-PYYGNDADFE 139
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 28.5 bits (63), Expect = 0.70
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 80 RQVALSVGSMNKGDCFALDTGREVLVYVGSKA 111
+ + + + + +D G E+ +++G A
Sbjct: 32 QPINATSSLFERYGLYLIDNGNELFLWMGGDA 63
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 27.1 bits (60), Expect = 1.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 43 GIRYLPGGVASGF 55
G++Y GGVASGF
Sbjct: 112 GLKYKKGGVASGF 124
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 126
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 43 GIRYLPGGVASGF 55
G+ Y GGVASG
Sbjct: 113 GLIYKQGGVASGM 125
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 25.8 bits (56), Expect = 5.8
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 210 SLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLE 269
+ G + G ++ GK++ L RG + L + ++T E +
Sbjct: 241 EIKTGGVMNILYAAEGYFILRGKETAD------LHRGYSCLVPASTDSFTVESERGKIVR 294
Query: 270 VW 271
++
Sbjct: 295 IY 296
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 24.8 bits (54), Expect = 7.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 43 GIRYLPGGVASG 54
G++Y GGV SG
Sbjct: 103 GLKYQEGGVESG 114
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 24.7 bits (54), Expect = 9.8
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 82 VALSVGSMNKGDCFALDTGREVLVYVGSKAA 112
V L S+ LDT +L+Y G + A
Sbjct: 15 VLLDSISVKPNTILLLDTFFFILIYHGEQIA 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.359
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 970,514
Number of extensions: 41913
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 23
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)