Query psy8090
Match_columns 242
No_of_seqs 360 out of 1593
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:11:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 2.6E-25 8.9E-30 185.7 7.7 128 86-231 7-184 (192)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 8.4E-26 2.9E-30 177.3 4.4 121 87-224 3-130 (131)
3 2xqn_T Testin, TESS; metal-bin 99.9 2E-25 7E-30 174.0 6.2 119 87-222 4-126 (126)
4 1rut_X Flinc4, fusion protein 99.9 1.8E-24 6.2E-29 180.1 2.2 126 87-229 6-138 (188)
5 2rgt_A Fusion of LIM/homeobox 99.9 1.7E-23 5.8E-28 171.3 7.0 121 87-225 7-131 (169)
6 2jtn_A LIM domain-binding prot 99.9 4.3E-23 1.5E-27 170.8 8.6 117 86-220 60-180 (182)
7 1m3v_A FLIN4, fusion of the LI 99.9 2.2E-22 7.5E-27 156.4 4.8 108 87-224 6-117 (122)
8 2cup_A Skeletal muscle LIM-pro 99.9 8.6E-22 3E-26 147.6 7.1 92 87-194 6-97 (101)
9 1j2o_A FLIN2, fusion of rhombo 99.8 1.6E-19 5.4E-24 138.6 6.2 104 87-224 4-109 (114)
10 1iml_A CRIP, cysteine rich int 99.7 1.5E-17 5.1E-22 118.3 4.4 70 88-162 2-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.2E-17 7.7E-22 118.8 3.0 71 86-161 7-77 (81)
12 2dj7_A Actin-binding LIM prote 99.7 7.3E-17 2.5E-21 116.2 5.0 66 85-156 14-79 (80)
13 1wyh_A SLIM 2, skeletal muscle 99.6 1.1E-16 3.8E-21 112.4 5.4 66 87-156 6-71 (72)
14 1x4k_A Skeletal muscle LIM-pro 99.6 8.8E-17 3E-21 112.9 4.6 66 87-156 6-71 (72)
15 1x68_A FHL5 protein; four-and- 99.6 7.3E-17 2.5E-21 114.8 3.9 68 87-158 6-75 (76)
16 1g47_A Pinch protein; LIM doma 99.6 1.2E-16 4.1E-21 113.6 4.7 66 86-155 11-76 (77)
17 2cu8_A Cysteine-rich protein 2 99.6 1.4E-16 5E-21 113.2 4.9 66 86-156 9-75 (76)
18 2ehe_A Four and A half LIM dom 99.6 4E-16 1.4E-20 112.4 4.9 65 88-156 17-81 (82)
19 2d8z_A Four and A half LIM dom 99.6 4E-16 1.4E-20 109.0 4.7 64 87-156 6-69 (70)
20 1x4l_A Skeletal muscle LIM-pro 99.6 5.6E-16 1.9E-20 108.9 5.1 64 87-154 6-71 (72)
21 2cuq_A Four and A half LIM dom 99.6 3.5E-16 1.2E-20 112.1 3.8 78 137-228 1-80 (80)
22 2cur_A Skeletal muscle LIM-pro 99.6 3.9E-16 1.3E-20 108.8 3.9 64 87-156 6-69 (69)
23 2d8y_A Eplin protein; LIM doma 99.6 7.9E-16 2.7E-20 113.2 5.6 68 85-157 14-81 (91)
24 1x63_A Skeletal muscle LIM-pro 99.6 1.1E-15 3.9E-20 109.9 5.4 66 87-156 16-81 (82)
25 2dar_A PDZ and LIM domain prot 99.6 7.3E-16 2.5E-20 113.1 4.5 64 87-156 26-89 (90)
26 1nyp_A Pinch protein; LIM doma 99.6 8.6E-16 3E-20 106.1 4.6 61 87-153 6-66 (66)
27 2ehe_A Four and A half LIM dom 99.6 3.5E-16 1.2E-20 112.7 2.3 80 137-228 1-82 (82)
28 1x64_A Alpha-actinin-2 associa 99.6 2.3E-15 7.7E-20 110.3 5.7 65 86-156 25-89 (89)
29 1x3h_A Leupaxin; paxillin fami 99.6 1.1E-15 3.7E-20 109.5 3.6 78 137-228 1-80 (80)
30 1x61_A Thyroid receptor intera 99.6 1.8E-15 6.3E-20 106.2 4.4 66 87-157 6-71 (72)
31 1x3h_A Leupaxin; paxillin fami 99.6 1.8E-15 6.1E-20 108.4 4.1 64 87-156 16-79 (80)
32 1x62_A C-terminal LIM domain p 99.6 1.5E-15 5E-20 108.8 3.4 65 86-156 15-79 (79)
33 2cor_A Pinch protein; LIM doma 99.5 5.6E-15 1.9E-19 105.9 6.1 62 87-155 16-77 (79)
34 2cuq_A Four and A half LIM dom 99.5 3.5E-15 1.2E-19 106.8 4.7 64 87-156 16-79 (80)
35 2dlo_A Thyroid receptor-intera 99.5 2.7E-15 9.4E-20 107.8 3.7 77 137-228 2-81 (81)
36 1x63_A Skeletal muscle LIM-pro 99.5 3E-15 1E-19 107.7 3.5 80 137-228 1-82 (82)
37 2dlo_A Thyroid receptor-intera 99.5 3.8E-15 1.3E-19 107.0 4.1 64 87-156 16-80 (81)
38 2d8x_A Protein pinch; LIM doma 99.5 6.1E-15 2.1E-19 103.0 4.8 63 87-155 6-68 (70)
39 3f6q_B LIM and senescent cell 99.5 4.1E-15 1.4E-19 103.9 3.9 62 86-151 11-72 (72)
40 1b8t_A Protein (CRP1); LIM dom 99.5 5.3E-15 1.8E-19 123.1 5.2 72 86-162 115-186 (192)
41 2co8_A NEDD9 interacting prote 99.5 7.8E-15 2.7E-19 105.9 4.5 66 85-155 14-81 (82)
42 2l3k_A Rhombotin-2, linker, LI 99.5 7.2E-15 2.5E-19 114.0 3.8 74 88-165 10-84 (123)
43 1x6a_A LIMK-2, LIM domain kina 99.5 2.8E-14 9.6E-19 102.4 4.8 76 137-226 1-80 (81)
44 1wig_A KIAA1808 protein; LIM d 99.5 5.7E-14 1.9E-18 99.1 5.3 60 87-152 6-66 (73)
45 2l4z_A DNA endonuclease RBBP8, 99.4 3.6E-14 1.2E-18 110.3 3.2 61 86-151 61-123 (123)
46 1x6a_A LIMK-2, LIM domain kina 99.4 8.9E-14 3E-18 99.7 5.0 63 88-156 17-81 (81)
47 2iyb_E Testin, TESS, TES; LIM 99.4 7.7E-14 2.6E-18 96.2 4.1 59 87-149 3-64 (65)
48 2egq_A FHL1 protein; LIM domai 99.4 9.4E-14 3.2E-18 98.6 4.0 58 87-148 16-76 (77)
49 2jtn_A LIM domain-binding prot 99.4 1.6E-13 5.6E-18 113.1 5.2 118 91-234 3-131 (182)
50 2egq_A FHL1 protein; LIM domai 99.4 2E-13 7E-18 96.8 4.1 71 137-219 1-76 (77)
51 1x4k_A Skeletal muscle LIM-pro 99.2 3.7E-12 1.3E-16 89.0 4.1 69 148-228 2-72 (72)
52 2d8z_A Four and A half LIM dom 99.2 5.2E-12 1.8E-16 87.8 4.4 67 148-228 2-70 (70)
53 2dar_A PDZ and LIM domain prot 99.2 3.9E-12 1.3E-16 93.0 3.3 73 142-228 16-90 (90)
54 1wyh_A SLIM 2, skeletal muscle 99.2 6E-12 2.1E-16 87.9 3.9 69 148-228 2-72 (72)
55 1rut_X Flinc4, fusion protein 99.2 4E-12 1.4E-16 105.2 3.2 68 88-159 71-139 (188)
56 2xjy_A Rhombotin-2; oncoprotei 99.2 2.7E-12 9.3E-17 99.9 1.3 61 88-152 68-129 (131)
57 1v6g_A Actin binding LIM prote 99.2 9.5E-12 3.3E-16 89.1 3.7 58 88-151 17-75 (81)
58 2xqn_T Testin, TESS; metal-bin 99.1 2.3E-11 7.9E-16 94.1 3.8 60 87-150 64-125 (126)
59 2cur_A Skeletal muscle LIM-pro 99.1 2.3E-11 7.9E-16 84.3 3.3 64 149-226 3-68 (69)
60 1v6g_A Actin binding LIM prote 99.1 2.3E-11 7.9E-16 87.0 2.4 73 138-224 2-77 (81)
61 1x68_A FHL5 protein; four-and- 99.1 2E-11 6.7E-16 86.4 1.8 69 148-228 2-74 (76)
62 1g47_A Pinch protein; LIM doma 99.1 5.4E-11 1.9E-15 84.1 3.5 67 149-227 9-77 (77)
63 1x4l_A Skeletal muscle LIM-pro 99.0 1.6E-10 5.5E-15 80.7 4.8 65 149-225 3-71 (72)
64 2cor_A Pinch protein; LIM doma 99.0 1.5E-10 5.1E-15 82.6 4.7 65 149-228 13-79 (79)
65 2cu8_A Cysteine-rich protein 2 99.0 6.2E-11 2.1E-15 83.7 2.3 68 148-228 6-76 (76)
66 1nyp_A Pinch protein; LIM doma 99.0 8.1E-11 2.8E-15 80.8 2.5 63 148-224 2-66 (66)
67 2dj7_A Actin-binding LIM prote 99.0 8.2E-11 2.8E-15 84.3 2.5 64 151-228 15-80 (80)
68 2cup_A Skeletal muscle LIM-pro 99.0 2.6E-10 8.9E-15 84.6 4.8 74 149-234 3-78 (101)
69 2l3k_A Rhombotin-2, linker, LI 99.0 2.2E-10 7.4E-15 88.5 4.4 74 146-231 1-79 (123)
70 1wig_A KIAA1808 protein; LIM d 99.0 3.1E-10 1.1E-14 79.7 4.1 63 148-224 2-67 (73)
71 1iml_A CRIP, cysteine rich int 99.0 1.2E-10 4E-15 82.3 1.7 67 152-231 1-70 (76)
72 2d8y_A Eplin protein; LIM doma 99.0 5.8E-10 2E-14 81.5 5.2 67 149-228 13-81 (91)
73 1x61_A Thyroid receptor intera 99.0 6.6E-10 2.2E-14 77.4 5.2 66 149-227 3-70 (72)
74 1j2o_A FLIN2, fusion of rhombo 99.0 7.7E-10 2.6E-14 84.3 5.7 68 151-231 3-74 (114)
75 1m3v_A FLIN4, fusion of the LI 98.9 1.4E-10 4.7E-15 89.5 1.4 73 149-234 3-81 (122)
76 2d8x_A Protein pinch; LIM doma 98.9 3.5E-10 1.2E-14 78.5 3.2 65 149-227 3-69 (70)
77 2rgt_A Fusion of LIM/homeobox 98.9 2.8E-10 9.5E-15 92.5 2.6 63 88-154 67-131 (169)
78 1a7i_A QCRP2 (LIM1); LIM domai 98.9 2.1E-10 7.1E-15 82.0 1.1 67 150-229 6-74 (81)
79 1x64_A Alpha-actinin-2 associa 98.8 1.4E-09 4.8E-14 79.1 3.7 63 150-226 24-88 (89)
80 1x62_A C-terminal LIM domain p 98.8 7.8E-10 2.7E-14 78.7 2.2 63 150-226 14-78 (79)
81 3f6q_B LIM and senescent cell 98.8 1.2E-09 4E-14 75.8 2.9 65 146-222 6-72 (72)
82 2l4z_A DNA endonuclease RBBP8, 98.8 3.5E-09 1.2E-13 81.9 3.8 62 148-222 58-123 (123)
83 2iyb_E Testin, TESS, TES; LIM 98.8 2.4E-09 8.1E-14 73.4 2.5 59 150-220 1-64 (65)
84 2co8_A NEDD9 interacting prote 98.6 2.4E-08 8.3E-13 71.5 3.4 61 151-224 15-79 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.6 2.5E-05 8.6E-10 45.5 1.9 28 87-119 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 95.4 0.0075 2.6E-07 34.7 2.0 29 151-192 3-31 (31)
87 2eqg_A Tumor necrosis factor, 78.2 1.3 4.4E-05 27.3 2.1 20 203-222 21-40 (49)
88 1t1h_A Gspef-atpub14, armadill 72.6 4.2 0.00014 27.2 4.0 47 117-164 7-56 (78)
89 2djb_A Polycomb group ring fin 71.8 3.6 0.00012 27.2 3.4 48 118-165 15-64 (72)
90 2ecy_A TNF receptor-associated 71.0 2.7 9.2E-05 27.3 2.6 46 118-164 15-63 (66)
91 2ysl_A Tripartite motif-contai 69.9 4.5 0.00015 26.5 3.5 46 118-164 20-70 (73)
92 1jm7_B BARD1, BRCA1-associated 69.5 4.5 0.00015 29.6 3.8 45 119-164 23-68 (117)
93 2kre_A Ubiquitin conjugation f 63.1 8.7 0.0003 27.5 4.2 50 115-165 26-77 (100)
94 2d8t_A Dactylidin, ring finger 61.0 8.8 0.0003 25.1 3.6 45 118-163 15-61 (71)
95 2ecv_A Tripartite motif-contai 60.8 6.9 0.00024 26.2 3.1 45 119-164 20-72 (85)
96 2ysm_A Myeloid/lymphoid or mix 60.7 34 0.0012 24.6 7.2 97 87-219 8-104 (111)
97 4ayc_A E3 ubiquitin-protein li 59.1 7.3 0.00025 29.3 3.3 27 137-163 71-99 (138)
98 2gvi_A Conserved hypothetical 59.0 3.8 0.00013 33.5 1.7 31 118-148 172-202 (204)
99 3l11_A E3 ubiquitin-protein li 58.4 6.9 0.00024 28.3 3.0 43 119-162 16-61 (115)
100 2egp_A Tripartite motif-contai 58.0 7.5 0.00026 25.8 2.9 45 119-164 13-66 (79)
101 2d8v_A Zinc finger FYVE domain 57.3 2.8 9.5E-05 28.2 0.5 29 121-150 11-39 (67)
102 2y43_A E3 ubiquitin-protein li 56.8 6 0.00021 27.8 2.3 45 119-163 23-69 (99)
103 2ecw_A Tripartite motif-contai 55.1 11 0.00036 25.2 3.3 46 119-165 20-73 (85)
104 1wgm_A Ubiquitin conjugation f 54.7 12 0.00042 26.6 3.7 49 116-165 20-71 (98)
105 2csy_A Zinc finger protein 183 54.2 6.4 0.00022 26.5 2.0 43 119-162 16-60 (81)
106 2kr4_A Ubiquitin conjugation f 53.8 10 0.00035 26.1 3.1 48 116-164 12-61 (85)
107 1jm7_A BRCA1, breast cancer ty 52.9 7.2 0.00025 27.8 2.2 14 152-165 59-72 (112)
108 1bor_A Transcription factor PM 52.4 12 0.00043 23.3 3.1 25 138-163 25-49 (56)
109 2ckl_A Polycomb group ring fin 52.1 8.5 0.00029 27.5 2.5 46 118-164 15-63 (108)
110 2jrp_A Putative cytoplasmic pr 51.4 10 0.00035 26.5 2.7 61 87-165 3-65 (81)
111 3vk6_A E3 ubiquitin-protein li 50.5 10 0.00035 27.6 2.6 43 121-163 4-49 (101)
112 1jjd_A Metallothionein, SMTA; 49.1 11 0.00036 24.4 2.3 28 120-147 9-37 (55)
113 3hcs_A TNF receptor-associated 48.2 11 0.00038 29.2 2.8 45 119-164 19-66 (170)
114 1e4u_A Transcriptional repress 48.1 18 0.00062 24.5 3.6 47 119-165 12-64 (78)
115 4ic3_A E3 ubiquitin-protein li 47.5 18 0.00061 24.0 3.4 24 138-163 43-67 (74)
116 2yur_A Retinoblastoma-binding 47.0 11 0.00038 24.9 2.3 45 118-163 15-64 (74)
117 1chc_A Equine herpes virus-1 r 45.7 11 0.00039 24.1 2.1 44 120-163 7-52 (68)
118 2c2l_A CHIP, carboxy terminus 45.5 13 0.00045 30.7 3.0 49 115-164 205-256 (281)
119 2ckl_B Ubiquitin ligase protei 45.3 11 0.00039 29.0 2.5 45 119-163 55-102 (165)
120 3nw0_A Non-structural maintena 45.2 17 0.00058 30.3 3.6 14 151-164 217-230 (238)
121 3fl2_A E3 ubiquitin-protein li 45.0 11 0.00037 27.6 2.2 44 119-163 53-99 (124)
122 1rmd_A RAG1; V(D)J recombinati 44.8 13 0.00044 26.8 2.5 45 119-164 24-71 (116)
123 2ecn_A Ring finger protein 141 44.7 9.6 0.00033 24.7 1.6 45 118-164 15-61 (70)
124 1wev_A Riken cDNA 1110020M19; 44.2 45 0.0015 23.1 5.3 58 151-220 16-73 (88)
125 2ct2_A Tripartite motif protei 43.1 15 0.00052 24.7 2.5 46 119-164 16-69 (88)
126 3ztg_A E3 ubiquitin-protein li 42.5 9.7 0.00033 26.2 1.4 44 118-162 13-61 (92)
127 3hct_A TNF receptor-associated 42.1 13 0.00043 27.1 2.1 45 119-164 19-66 (118)
128 3lrq_A E3 ubiquitin-protein li 41.4 11 0.00038 26.6 1.6 46 119-164 23-71 (100)
129 1z6u_A NP95-like ring finger p 40.8 14 0.00048 28.3 2.3 45 119-164 79-126 (150)
130 3od8_A Poly [ADP-ribose] polym 40.3 8 0.00027 28.9 0.7 47 146-195 33-80 (116)
131 2ecm_A Ring finger and CHY zin 39.9 15 0.00052 22.3 1.9 11 152-162 44-54 (55)
132 2ea6_A Ring finger protein 4; 39.4 8.9 0.0003 24.5 0.8 27 136-162 39-67 (69)
133 2xeu_A Ring finger protein 4; 39.1 8.3 0.00028 24.3 0.6 47 119-165 4-58 (64)
134 2cs2_A Poly [ADP-ribose] polym 38.7 8.6 0.00029 29.4 0.7 48 146-194 22-70 (134)
135 4gne_A Histone-lysine N-methyl 38.3 48 0.0016 24.1 4.7 69 87-192 16-84 (107)
136 1g25_A CDK-activating kinase a 37.7 18 0.00061 23.0 2.1 47 119-165 4-57 (65)
137 2f42_A STIP1 homology and U-bo 37.6 21 0.00072 28.5 2.9 48 116-164 104-154 (179)
138 2ecg_A Baculoviral IAP repeat- 37.5 27 0.00094 23.0 3.1 21 141-163 48-68 (75)
139 2yt5_A Metal-response element- 36.4 51 0.0017 21.2 4.3 59 152-223 7-65 (66)
140 1v9x_A Poly (ADP-ribose) polym 35.8 13 0.00043 27.6 1.2 46 146-194 15-61 (114)
141 3ng2_A RNF4, snurf, ring finge 35.1 9.8 0.00034 24.6 0.5 29 137-165 35-65 (71)
142 1uw0_A DNA ligase III; DNA rep 34.8 11 0.00038 28.0 0.7 27 146-172 10-36 (117)
143 2ect_A Ring finger protein 126 33.9 28 0.00095 22.9 2.7 26 139-164 38-65 (78)
144 2dmj_A Poly (ADP-ribose) polym 33.5 13 0.00043 27.1 0.9 46 146-194 20-66 (106)
145 1d4b_A CIDE B, human cell deat 33.2 6.4 0.00022 29.7 -0.8 23 12-34 87-109 (122)
146 3knv_A TNF receptor-associated 32.8 7.4 0.00025 29.7 -0.6 44 118-162 31-77 (141)
147 2ecj_A Tripartite motif-contai 32.5 33 0.0011 20.8 2.7 30 119-149 16-45 (58)
148 2e5r_A Dystrobrevin alpha; ZZ 32.0 42 0.0014 21.9 3.2 38 109-148 4-44 (63)
149 1iym_A EL5; ring-H2 finger, ub 32.0 37 0.0013 20.4 2.9 13 88-100 7-19 (55)
150 4ap4_A E3 ubiquitin ligase RNF 31.7 20 0.00068 25.9 1.7 71 87-165 49-127 (133)
151 2eel_A Cell death activator CI 31.3 3.8 0.00013 29.3 -2.2 23 12-34 62-84 (91)
152 2bay_A PRE-mRNA splicing facto 31.0 29 0.00098 22.3 2.2 47 118-165 3-52 (61)
153 3d00_A Tungsten formylmethanof 30.0 13 0.00045 30.0 0.5 26 118-149 163-188 (191)
154 2ep4_A Ring finger protein 24; 29.5 41 0.0014 21.7 2.9 27 137-163 36-64 (74)
155 3odc_A Poly [ADP-ribose] polym 26.9 7.6 0.00026 28.7 -1.4 27 146-172 14-40 (111)
156 3na7_A HP0958; flagellar bioge 26.1 21 0.00072 29.9 1.1 58 62-130 177-234 (256)
157 2ysj_A Tripartite motif-contai 26.0 23 0.00079 22.2 1.1 32 118-150 20-51 (63)
158 2kiz_A E3 ubiquitin-protein li 24.0 46 0.0016 21.1 2.3 26 138-163 36-63 (69)
159 3po3_S Transcription elongatio 23.3 1.3E+02 0.0044 23.8 5.2 10 86-95 137-146 (178)
160 2ct0_A Non-SMC element 1 homol 23.2 22 0.00075 24.1 0.5 28 152-192 16-43 (74)
161 2yu4_A E3 SUMO-protein ligase 22.8 40 0.0014 23.4 1.9 45 117-162 6-62 (94)
162 1wfh_A Zinc finger (AN1-like) 22.6 36 0.0012 22.6 1.5 10 87-96 16-25 (64)
163 3v43_A Histone acetyltransfera 22.5 80 0.0027 22.7 3.6 41 136-192 52-92 (112)
164 2k8f_B Cellular tumor antigen 22.1 68 0.0023 18.6 2.4 21 4-24 12-32 (39)
165 4av1_A Poly [ADP-ribose] polym 21.1 20 0.00069 29.7 0.0 49 147-195 139-187 (223)
166 2yho_A E3 ubiquitin-protein li 20.5 65 0.0022 21.5 2.6 21 141-163 41-61 (79)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.91 E-value=2.6e-25 Score=185.70 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=108.3
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCC------------
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR------------ 153 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~pr------------ 153 (242)
..+|.+|+++|..++.+. ++++.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+
T Consensus 7 ~~~C~~C~~~I~~~~~v~-----a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~ 81 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQ-----CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLS 81 (192)
T ss_dssp CEECTTTCCEECSSCCEE-----ETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEE-----eCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEe
Confidence 347999999998776543 689999999999999999999989999999999999999999987
Q ss_pred ------------------------------------cccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CC
Q psy8090 154 ------------------------------------CSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DL 195 (242)
Q Consensus 154 ------------------------------------C~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~ 195 (242)
|++|+++|.++.. +.+.++.||.+||. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-------------v~a~~~~~H~~CF~C~~C 148 (192)
T 1b8t_A 82 TDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEK-------------VIGAGKSWHKSCFRCAKC 148 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSC-------------EEETTEEECTTTCBCTTT
T ss_pred cCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEE-------------EecCCCccchhcCCcccc
Confidence 5667777765431 23478999999993 24
Q ss_pred CCCCCCCCcccCCCCCCCHHHHhhhhcccccCCCCC
Q psy8090 196 PESYGTHRNSLNKEQNHSFDNLLKSNLKKLSLADSD 231 (242)
Q Consensus 196 ~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~~~~~~ 231 (242)
..++.+..|..+++++||..||.++|++||..++..
T Consensus 149 ~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 149 GKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp CCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred CCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 567777789999999999999999999999988765
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=8.4e-26 Score=177.28 Aligned_cols=121 Identities=15% Similarity=0.337 Sum_probs=102.1
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC--CccceeeCCeeccHhhhhcccCC--CcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEECQ 162 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~~y~~~~~p--rC~~C~~~I~ 162 (242)
.+|.+|+++|.+.+ ++. ++++.||++||+|..|+++|. +..|+.+||++||+.||.++|++ +|.+|+++|.
T Consensus 3 ~~C~~C~~~I~~~~-~~~----a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 3 LTCGGCQQNIGDRY-FLK----AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBBTTTCCBCCSSE-EEE----ETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCCEeCCcE-EEE----ECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 47999999999754 344 789999999999999999995 47899999999999999999999 9999999998
Q ss_pred CCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCC-CCCCcccCCCCCCCHHHHhhhhccc
Q psy8090 163 TSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESY-GTHRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~-g~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
+.+..+ .+.++.||.+||.+ +..++ .+..|...++++||..||.++|+++
T Consensus 78 ~~e~~~------------~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 78 AYEMTM------------RVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp TTSEEE------------EETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ccceeE------------eeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 754222 33789999999942 34566 3667888999999999999999865
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=2e-25 Score=174.04 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=102.5
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCCc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSSQ 166 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~ 166 (242)
.+|.+|+++|..++.+ . ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+++|++|+++|.+++.
T Consensus 4 ~~C~~C~~~I~~~~~~-~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~ 78 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYT-Q----AENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQ 78 (126)
T ss_dssp CBBTTTSSBCCSSCEE-E----ETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSC
T ss_pred CCCccCCCEeCCceEE-e----eCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCce
Confidence 3799999999976643 3 7899999999999999999998899999999999999999999999999999997553
Q ss_pred ceeeeeecCCCCCCCCCCCccc--CCCccC--CCCCCCCCCcccCCCCCCCHHHHhhhhc
Q psy8090 167 DILYYLTRDSERDLPDEYRTER--LEHQRD--LPESYGTHRNSLNKEQNHSFDNLLKSNL 222 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~h--~~~f~~--~~~~~g~~~f~~~d~~~yC~~cy~~~~a 222 (242)
.| .+.++.|| .+||.+ +..++.+..|.+.++++||..+|.+.|+
T Consensus 79 ~~------------~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f~ 126 (126)
T 2xqn_T 79 RV------------TYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 126 (126)
T ss_dssp EE------------EETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSCC
T ss_pred EE------------ECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhcC
Confidence 22 33679999 999932 4567888899999999999988887763
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.89 E-value=1.8e-24 Score=180.07 Aligned_cols=126 Identities=15% Similarity=0.258 Sum_probs=100.7
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCC--ccceeeCCeeccHhhhhcccCC--CcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKP--RCSACDEECQ 162 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~--~~~~~~dg~~yC~~~y~~~~~p--rC~~C~~~I~ 162 (242)
.+|.+|+++|.+.. ++. ++++.||++||+|..|+++|.+ ..||.+||++||+.||.++|++ +|.+|+++|.
T Consensus 6 ~~C~~C~~~I~~~~-~~~----a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 6 KRCAGCGGKIADRF-LLY----AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBBTTTCCBCCCSE-EEE----ETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcCccCCCEeCCce-eEE----ecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 47999999999754 343 6899999999999999999975 6899999999999999999999 7999999998
Q ss_pred CCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC-CCCcccCCCCCCCHHHHhhhhcccccCCC
Q psy8090 163 TSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG-THRNSLNKEQNHSFDNLLKSNLKKLSLAD 229 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g-~~~f~~~d~~~yC~~cy~~~~a~kc~~~~ 229 (242)
+.+.. + .+.++.||.+||.+ +...+. +..|...++++||..||.++++++|...+
T Consensus 81 ~~e~~----i--------~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g 138 (188)
T 1rut_X 81 ASELV----M--------RAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSG 138 (188)
T ss_dssp TTSEE----E--------EETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-------
T ss_pred cCcEE----E--------EcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccC
Confidence 75422 2 33678999999943 345664 56788999999999999999999986443
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=1.7e-23 Score=171.31 Aligned_cols=121 Identities=15% Similarity=0.314 Sum_probs=98.5
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCCc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSSQ 166 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~ 166 (242)
.+|.+|+++|.+.++ +. ++++.||++||+|..|+++|.+.. |.+||++||+.||.++|+++|.+|+++|.+.+.
T Consensus 7 ~~C~~C~~~I~~~~~-~~----a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~ 80 (169)
T 2rgt_A 7 PMCAGCDQHILDRFI-LK----ALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQV 80 (169)
T ss_dssp CBBSSSSSBCCSSSC-EE----CSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSE
T ss_pred CccccCCCccCCcEE-EE----ECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcE
Confidence 479999999997543 43 789999999999999999998755 689999999999999999999999999987652
Q ss_pred ceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC-CCCc-ccCCCCCCCHHHHhhhhcccc
Q psy8090 167 DILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG-THRN-SLNKEQNHSFDNLLKSNLKKL 225 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g-~~~f-~~~d~~~yC~~cy~~~~a~kc 225 (242)
.+ .+.++.||.+||.+ +...+. +..| ...++++||..||.+.++..+
T Consensus 81 v~------------~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 81 VR------------RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS 131 (169)
T ss_dssp EE------------EETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-
T ss_pred EE------------EcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccC
Confidence 11 34678999999932 345564 4444 567999999999999887643
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.88 E-value=4.3e-23 Score=170.85 Aligned_cols=117 Identities=15% Similarity=0.332 Sum_probs=95.4
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCC
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSS 165 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~ 165 (242)
..+|.+|+++|.+.+. +. ++++.||+.||+|..|+++|.+.. |.+||++||..||.++|+++|.+|+++|.+.+
T Consensus 60 ~~~C~~C~~~I~~~~~-~~----a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFI-LK----ALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQ 133 (182)
T ss_dssp CCBCBTSSSBCCCSEE-EE----ETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSC
T ss_pred CCcCccCCCCccCcee-EE----ecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCc
Confidence 4589999999997543 33 689999999999999999998755 68999999999999999999999999998754
Q ss_pred cceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC-CCCc-ccCCCCCCCHHHHhhh
Q psy8090 166 QDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG-THRN-SLNKEQNHSFDNLLKS 220 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g-~~~f-~~~d~~~yC~~cy~~~ 220 (242)
.. +.+.++.||.+||.+ +..++. +..| ...++++||..||.+.
T Consensus 134 ~v------------~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 134 VV------------RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CC------------CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred eE------------EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 21 234778999999932 345565 3444 5679999999999874
No 7
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=2.2e-22 Score=156.43 Aligned_cols=108 Identities=11% Similarity=0.192 Sum_probs=90.9
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC--CccceeeCCeeccHhhhhcccCC--CcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEECQ 162 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~~y~~~~~p--rC~~C~~~I~ 162 (242)
.+|.+|+++|.+.+. +. ++++.||++||+|..|+++|. +..||.+||++||..||.++|++ +|++|+++|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~----a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 6 KRCAGCGGKIADRFL-LY----AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCBSSSSSCCCSSCC-EE----ETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcccCCEeCCcEE-EE----ECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 379999999998754 33 689999999999999999997 46899999999999999999999 9999999999
Q ss_pred CCCcceeeeeecCCCCCCCCCCCcccCCCccCCCCCCCCCCcccCCCCCCCHHHHhhhhccc
Q psy8090 163 TSSQDILYYLTRDSERDLPDEYRTERLEHQRDLPESYGTHRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
++. + .+.++ ..+.++.|+.+++++||..||.+.++.+
T Consensus 81 ~~~------~--------~~~g~-----------~~l~g~~f~~~~~~~yC~~~~~~~~~~~ 117 (122)
T 1m3v_A 81 GGD------V--------MVVGE-----------PTLMGGEFGDEDERLITRLENTQFDAAN 117 (122)
T ss_dssp CEE------S--------SSSSS-----------SSCCSCTTCCTTCCCCEECTTTTTTCCS
T ss_pred chh------e--------EEcCC-----------cCCCCCccEecCCEeEccCcchhchhhc
Confidence 743 1 11222 1467889999999999999999886554
No 8
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.85 E-value=8.6e-22 Score=147.61 Aligned_cols=92 Identities=18% Similarity=0.448 Sum_probs=79.9
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCCc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSSQ 166 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~ 166 (242)
.+|.+|+++|..+..++. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+++|.+|+++|.+++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~ 81 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVH----YKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQ 81 (101)
T ss_dssp CBCSSSCCBCCSSSCEEE----ETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSC
T ss_pred CcCcccCCcccCCceEEE----ECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCe
Confidence 479999999986444454 6899999999999999999998889999999999999999999999999999997653
Q ss_pred ceeeeeecCCCCCCCCCCCcccCCCccC
Q psy8090 167 DILYYLTRDSERDLPDEYRTERLEHQRD 194 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~h~~~f~~ 194 (242)
. +.+.++.||.+||.+
T Consensus 82 ~------------~~a~~~~~H~~CF~C 97 (101)
T 2cup_A 82 N------------VEYKGTVWHKDCFSG 97 (101)
T ss_dssp E------------EESSSCEEETTTCCC
T ss_pred E------------EEeCCcchHHhCCCC
Confidence 2 234789999999954
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=138.63 Aligned_cols=104 Identities=12% Similarity=0.216 Sum_probs=83.5
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCC--ccceeeCCeeccHhhhhcccCCCcccCCCcccCC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKPRCSACDEECQTS 164 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~--~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~ 164 (242)
.+|.+|+++|.+.+. +. ++++.||++||+|..|+++|.+ ..||.+||++||+.||.++|+|+|..|.. +
T Consensus 4 ~~C~~C~~~I~~~~~-~~----a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~----~ 74 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYF-LK----AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG----G 74 (114)
T ss_dssp BCBSSSCSCBCSSEE-EE----CSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS----C
T ss_pred CCCcCCCCeeCCcEE-EE----ECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC----C
Confidence 479999999997543 44 7899999999999999999975 68999999999999999999999998862 1
Q ss_pred CcceeeeeecCCCCCCCCCCCcccCCCccCCCCCCCCCCcccCCCCCCCHHHHhhhhccc
Q psy8090 165 SQDILYYLTRDSERDLPDEYRTERLEHQRDLPESYGTHRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
. ++ . +. ...+.++.|+.+++++||..||.+..+..
T Consensus 75 ~-----~~--------~-~~-----------~~~~~g~~f~~~~~~~~C~~~~~~~~~~~ 109 (114)
T 1j2o_A 75 D-----VM--------V-VG-----------EPTLMGGEFGDEDERLITRLENTQFDAAN 109 (114)
T ss_dssp S-----CC--------C-SS-----------CSSTTSSBCCCSSSCCCEEEECTTCCCTT
T ss_pred c-----ee--------E-cC-----------CccCCCCeeEEcCCEeecchhhhcccccc
Confidence 1 01 0 11 12356778999999999999988765443
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.5e-17 Score=118.31 Aligned_cols=70 Identities=19% Similarity=0.385 Sum_probs=63.6
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccH-hhhhcccCCCcccCCCccc
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSACDEECQ 162 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~-~~y~~~~~prC~~C~~~I~ 162 (242)
+|.+|+++|..++.+. ++++.||++||+|..|+++|.+..|+.+||++||. .||.++|+++|++|++.+.
T Consensus 2 ~C~~C~~~I~~~~~v~-----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 2 KCPKCDKEVYFAERVT-----SLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp BCTTTSSBCCGGGEEE-----ETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred cCCCCCCEEECceEEE-----ECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 6999999999776643 67999999999999999999988999999999999 5999999999999997764
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.66 E-value=2.2e-17 Score=118.81 Aligned_cols=71 Identities=17% Similarity=0.371 Sum_probs=55.3
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEEC 161 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I 161 (242)
..+|.+|+++|..++.+ . +.++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|+|.+|++..
T Consensus 7 ~~~C~~C~~~I~~~~~~-~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV-Q----CDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp -CBCSSSCCBCSSTTEE-E----ETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCcCcCcCccccCceeE-E----eCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 34799999999877654 3 68999999999999999999988899999999999999999999999998764
No 12
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.3e-17 Score=116.23 Aligned_cols=66 Identities=23% Similarity=0.632 Sum_probs=59.3
Q ss_pred cccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 85 APMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 85 ~~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
....|.+|+++|..++.+. ++++.||++||+|..|+++|.+ .||.+||++||+.||.++|+++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~v~-----a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL-----ALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE-----ETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCcCcCCeeCCCeEEE-----ECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3457999999998776644 6899999999999999999986 7999999999999999999999975
No 13
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.1e-16 Score=112.39 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=60.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+++.++. ++++.||++||+|..|+++|.+..|+.++|++||..||.++|+|+|++
T Consensus 6 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE----YGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC----STTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEE----ECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 379999999998655554 789999999999999999999889999999999999999999999974
No 14
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=8.8e-17 Score=112.88 Aligned_cols=66 Identities=17% Similarity=0.425 Sum_probs=60.3
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+++.++. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+|+|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME----YKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE----ETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEE----ECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 379999999998765565 689999999999999999999889999999999999999999999974
No 15
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=7.3e-17 Score=114.79 Aligned_cols=68 Identities=18% Similarity=0.446 Sum_probs=61.0
Q ss_pred cccccCCCceec--CccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCC
Q psy8090 87 MFCENCEDELQT--SDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACD 158 (242)
Q Consensus 87 ~~C~~C~~~I~~--~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~ 158 (242)
.+|.+|+++|.+ +..++. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+++|+.+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~----a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC----FQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE----ETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEE----ECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 379999999996 334454 78999999999999999999998999999999999999999999999874
No 16
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.2e-16 Score=113.65 Aligned_cols=66 Identities=18% Similarity=0.499 Sum_probs=58.6
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 155 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~ 155 (242)
...|.+|+++|.+++.++. +.++.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+|+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN----SNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE----ETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCchhcCCccCCCceEEE----eCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 3479999999997666665 67999999999999999999988999999999999999999999996
No 17
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.4e-16 Score=113.16 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=59.8
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccH-hhhhcccCCCccc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSA 156 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~-~~y~~~~~prC~~ 156 (242)
..+|.+|+++|..++.+. ++++.||++||+|..|+++|.+..|+.+|+++||. .||.++|+|+|.+
T Consensus 9 ~~~C~~C~~~I~~~~~v~-----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS-----SLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE-----ETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCcCCCCEeECCeEEE-----ECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 347999999999777643 68999999999999999999988999999999999 7999999999974
No 18
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=112.38 Aligned_cols=65 Identities=22% Similarity=0.543 Sum_probs=59.6
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
+|.+|+++|.+++.++. ++++.||++||+|..|+++|.+..|+.+++++||..||.++|+++|++
T Consensus 17 ~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELF----YEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp BCTTTCCBCCSSCCBCC----CSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred cCccCCCccccCcEEEE----eCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 79999999996556564 789999999999999999999989999999999999999999999974
No 19
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4e-16 Score=109.01 Aligned_cols=64 Identities=25% Similarity=0.492 Sum_probs=58.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+. . +. ++++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|+|++
T Consensus 6 ~~C~~C~~~I~~~-~-~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G-VT----YREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCSS-E-EE----SSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeeccc-e-EE----ECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 3799999999863 3 43 789999999999999999999889999999999999999999999974
No 20
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5.6e-16 Score=108.89 Aligned_cols=64 Identities=20% Similarity=0.482 Sum_probs=57.7
Q ss_pred cccccCCCceec--CccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCc
Q psy8090 87 MFCENCEDELQT--SDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC 154 (242)
Q Consensus 87 ~~C~~C~~~I~~--~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC 154 (242)
.+|.+|+++|.+ ++.++. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+|++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~----a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS----FEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE----CSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEE----ECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 479999999996 445554 7899999999999999999999899999999999999999999986
No 21
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.5e-16 Score=112.11 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF 214 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~ 214 (242)
+|++||+.||.++++++|++|+++|.+.. +.+.++.||.+||. .+..++.+..|...++++||.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~--------------v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~ 66 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGG--------------VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCV 66 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCC--------------EESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEH
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcE--------------EEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECH
Confidence 58999999999999999999999998631 24478999999993 245677788899999999999
Q ss_pred HHHhhhhcccccCC
Q psy8090 215 DNLLKSNLKKLSLA 228 (242)
Q Consensus 215 ~cy~~~~a~kc~~~ 228 (242)
.||.++|+++|+++
T Consensus 67 ~cy~~~f~~~c~s~ 80 (80)
T 2cuq_A 67 ACFGELFASGPSSG 80 (80)
T ss_dssp HHHHHHTTCSTTCC
T ss_pred HHHHHHcCCCCCCC
Confidence 99999999999864
No 22
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.9e-16 Score=108.79 Aligned_cols=64 Identities=20% Similarity=0.478 Sum_probs=57.9
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+ +. +. ++++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|++
T Consensus 6 ~~C~~C~~~I~~-~~-~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAITS-GG-IT----YQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCSSSCCCCCT-TC-EE----ETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCCcccCCEeCc-ce-EE----ECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 379999999986 33 33 679999999999999999999889999999999999999999999975
No 23
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7.9e-16 Score=113.15 Aligned_cols=68 Identities=24% Similarity=0.485 Sum_probs=61.2
Q ss_pred cccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccC
Q psy8090 85 APMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSAC 157 (242)
Q Consensus 85 ~~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C 157 (242)
....|.+|+++|.+++.+ . ++++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|..+
T Consensus 14 ~~~~C~~C~~~I~~~~~v-~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL-L----ANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE-E----CSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCCcCccCCCccCCceeE-E----ECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCcc
Confidence 345899999999987764 3 7899999999999999999998889999999999999999999999843
No 24
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.1e-15 Score=109.90 Aligned_cols=66 Identities=27% Similarity=0.635 Sum_probs=60.3
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|..++.++. ++++.||++||+|..|+++|.+..|+.+++++||..||.++|+|+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE----YKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE----CSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred CcCccCCcccccCceEEE----ECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 379999999998776665 789999999999999999999889999999999999999999999863
No 25
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.3e-16 Score=113.12 Aligned_cols=64 Identities=19% Similarity=0.516 Sum_probs=57.6
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+ +. +. ++++.||++||+|..|+++|.+..|+.++|++||..||.++|+|+|+.
T Consensus 26 ~~C~~C~~~I~~-~~-v~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 26 PMCAHCNQVIRG-PF-LV----ALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CBBSSSCCBCCS-CE-EE----ETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCccCCCEecc-eE-EE----ECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 479999999964 33 43 689999999999999999999889999999999999999999999974
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.58 E-value=8.6e-16 Score=106.12 Aligned_cols=61 Identities=20% Similarity=0.487 Sum_probs=55.2
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR 153 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~pr 153 (242)
..|.+|+++|. ++. +. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+|+
T Consensus 6 ~~C~~C~~~I~-~~~-~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRV-VN----AMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCE-EC----CTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceE-EE----ECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 37999999999 444 43 789999999999999999999989999999999999999999875
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-16 Score=112.69 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=68.6
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF 214 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~ 214 (242)
+|++||+.||.++|+++|++|+++|.+.+. .+.+.++.||.+||. .+..++.+..|...++++||.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~------------~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~ 68 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSR------------ELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCN 68 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCC------------BCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEET
T ss_pred CCceechhHhCcccCCcCccCCCccccCcE------------EEEeCCccccccCCeecCCCCccCCCccEeeCCEEECH
Confidence 689999999999999999999999985332 145578999999993 245678888899999999999
Q ss_pred HHHhhhhcccccCC
Q psy8090 215 DNLLKSNLKKLSLA 228 (242)
Q Consensus 215 ~cy~~~~a~kc~~~ 228 (242)
.||.++|++||+.+
T Consensus 69 ~c~~~~~~~~C~~~ 82 (82)
T 2ehe_A 69 DCYCSAFSSGPSSG 82 (82)
T ss_dssp TTSSCCGGGSSCCC
T ss_pred HHHhhhcCCCCCCC
Confidence 99999999999864
No 28
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.3e-15 Score=110.25 Aligned_cols=65 Identities=28% Similarity=0.578 Sum_probs=58.2
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
..+|.+|++.|.+ + ++. ++++.||++||+|..|++.|.+..||.+|+++||+.||.++|+|+|.+
T Consensus 25 ~~~C~~C~~~I~~-~-~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A-VVK----ARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp CCBCTTTCCBCCS-C-CEE----SSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCCC
T ss_pred CCCcccCCCEecc-c-EEE----ECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 3479999999996 3 344 789999999999999999999889999999999999999999999863
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.1e-15 Score=109.50 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=66.6
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF 214 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~ 214 (242)
+|++||++||.++++++|++|+++|.+.. +.+.++.||.+||. .+..++.+..|...++++||.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~--------------v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~ 66 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENY--------------LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCE 66 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC--------------EEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECH
T ss_pred CCCccchhHHhhhcCCccccCCCeeccee--------------EEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECH
Confidence 47899999999999999999999998621 23478999999993 245677777899999999999
Q ss_pred HHHhhhhcccccCC
Q psy8090 215 DNLLKSNLKKLSLA 228 (242)
Q Consensus 215 ~cy~~~~a~kc~~~ 228 (242)
.||.++|+++|+.+
T Consensus 67 ~~y~~~f~~~C~~~ 80 (80)
T 1x3h_A 67 LHYHHRRGSGPSSG 80 (80)
T ss_dssp HHHHHHHSSSCCCC
T ss_pred HHHHHHcCCCCCCC
Confidence 99999999999864
No 30
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.8e-15 Score=106.15 Aligned_cols=66 Identities=23% Similarity=0.530 Sum_probs=57.8
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSAC 157 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C 157 (242)
.+|.+|+++|.+++.++. ++++.||++||+|..|+++|.+..|+.+|+++||..||.++| .+|..+
T Consensus 6 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV----ALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE----CSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCccCCCccCCCceEEE----ECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 479999999998655555 789999999999999999999888999999999999999888 456554
No 31
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.8e-15 Score=108.37 Aligned_cols=64 Identities=20% Similarity=0.502 Sum_probs=58.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
..|.+|+++|.+ +. +. ++++.||+.||+|..|+++|.+..|+.+|+++||..||.++|+++|++
T Consensus 16 ~~C~~C~~~I~~-~~-v~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY-LS----AMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CBCTTTCCBCCS-SC-EE----ETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CccccCCCeecc-ee-EE----ECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 379999999997 33 33 689999999999999999999889999999999999999999999975
No 32
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.5e-15 Score=108.83 Aligned_cols=65 Identities=25% Similarity=0.537 Sum_probs=58.1
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
..+|.+|+++|.+. ++. ++++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|++.+
T Consensus 15 ~~~C~~C~~~I~~~--~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~g 79 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--FVK----LRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG 79 (79)
T ss_dssp CCCCSSSCCCCCSS--CEE----CSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCCC
T ss_pred CCccccCCCCccCc--EEE----ECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 45899999999973 344 789999999999999999999888999999999999999999999753
No 33
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=5.6e-15 Score=105.92 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=54.8
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 155 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~ 155 (242)
.+|.+|+++|.+ +. +. ++++.||++||+|..|+++|.+. +|.+||++||..||.++|+|+++
T Consensus 16 ~~C~~C~~~I~~-~~-v~----a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 16 YICQKCHAIIDE-QP-LI----FKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CBCTTTCCBCCS-CC-CC----CSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred CCCccCCCEecc-eE-EE----ECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 479999999994 44 43 78999999999999999999876 67999999999999999999875
No 34
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.5e-15 Score=106.82 Aligned_cols=64 Identities=23% Similarity=0.478 Sum_probs=58.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+. . +. ++++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|+|+.
T Consensus 16 ~~C~~C~~~I~~~-~-v~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G-VT----YRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCTTTCCCCCSC-C-EE----SSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcCCCCCCEecCc-E-EE----ECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 3799999999874 3 43 789999999999999999999889999999999999999999999974
No 35
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.7e-15 Score=107.78 Aligned_cols=77 Identities=8% Similarity=0.017 Sum_probs=64.6
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccC-CCCCCC
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLN-KEQNHS 213 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~-d~~~yC 213 (242)
||++||+.||. +++++|++|+++|.+. + +.+.++.||.+||. .+..++.+..|... ++++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~------~--------~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR------I--------LRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC------C--------EEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce------e--------EEECCccccHHhcCcccCCCccCCCeeEECCCCEEEC
Confidence 78999999999 7999999999999842 1 23478999999993 24567888888876 789999
Q ss_pred HHHHhhhhcccccCC
Q psy8090 214 FDNLLKSNLKKLSLA 228 (242)
Q Consensus 214 ~~cy~~~~a~kc~~~ 228 (242)
..||.++|++||+.+
T Consensus 67 ~~cy~~~f~~~C~~~ 81 (81)
T 2dlo_A 67 IEDFHRKFASGPSSG 81 (81)
T ss_dssp HHHHHHHTTSSSCCC
T ss_pred HHHHHHHhcCcCCCC
Confidence 999999999999864
No 36
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3e-15 Score=107.69 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=67.6
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF 214 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~ 214 (242)
++.+||+.||.++++++|.+|+++|.+++. + +.+.++.||.+||. .+..++.+..|..+++++||.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~ 68 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQ----N--------VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCV 68 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSC----E--------EECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEH
T ss_pred CCCcCchhHHccccCCcCccCCcccccCce----E--------EEECccccccccCchhhCCCccCCCccEeeCCEEECH
Confidence 468999999999999999999999987553 2 23478999999993 345678888899999999999
Q ss_pred HHHhhhhcccccCC
Q psy8090 215 DNLLKSNLKKLSLA 228 (242)
Q Consensus 215 ~cy~~~~a~kc~~~ 228 (242)
.||.++|++|++.+
T Consensus 69 ~cy~~~f~~~~~~g 82 (82)
T 1x63_A 69 TCHETKFASGPSSG 82 (82)
T ss_dssp HHHHHHTSCCCSCC
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999998753
No 37
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.8e-15 Score=107.03 Aligned_cols=64 Identities=22% Similarity=0.503 Sum_probs=56.4
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceee-CCeeccHhhhhcccCCCccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~-dg~~yC~~~y~~~~~prC~~ 156 (242)
.+|.+|+++|.+ . ++. ++++.||++||+|..|+++|.+..|+.. ||++||..||.++|+|+|++
T Consensus 16 ~~C~~C~~~I~~-~-~~~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 16 EKCATCSQPILD-R-ILR----AMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CBCTTTCCBCCS-C-CEE----ETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CccccCCCeecc-e-eEE----ECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 479999999985 3 444 6899999999999999999998777766 79999999999999999975
No 38
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6.1e-15 Score=102.98 Aligned_cols=63 Identities=25% Similarity=0.626 Sum_probs=56.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 155 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~ 155 (242)
.+|.+|+++|.+ +. +. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+++..
T Consensus 6 ~~C~~C~~~I~~-~~-~~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV-IK----AMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp SBCSSSCCBCCS-CC-EE----ETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CcCccCCCEecc-eE-EE----ECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 379999999985 33 43 68999999999999999999988899999999999999999998764
No 39
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.53 E-value=4.1e-15 Score=103.93 Aligned_cols=62 Identities=18% Similarity=0.517 Sum_probs=56.0
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccC
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK 151 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~ 151 (242)
..+|.+|+++|.+++.++. +.++.||++||+|..|+++|.+..|+.+||++||+.||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~----~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN----SNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE----ETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEE----eCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3479999999998877665 6799999999999999999988899999999999999998875
No 40
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.53 E-value=5.3e-15 Score=123.06 Aligned_cols=72 Identities=19% Similarity=0.533 Sum_probs=65.5
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCccc
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQ 162 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~ 162 (242)
..+|.+|+++|.+++.+. ++++.||++||+|..|+++|.+..|+.+||++||..||.++|+++|.+|+++|-
T Consensus 115 ~~~C~~C~~~I~~~~~v~-----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI-----GAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CEECTTTSCEECSSSCEE-----ETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCcCCCCCCEecCcEEEe-----cCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 347999999999876654 679999999999999999998888999999999999999999999999999863
No 41
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.8e-15 Score=105.92 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=57.1
Q ss_pred cccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccce--eeCCeeccHhhhhcccCCCcc
Q psy8090 85 APMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYF--YRGDKLYCGRHHAETLKPRCS 155 (242)
Q Consensus 85 ~~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~--~~dg~~yC~~~y~~~~~prC~ 155 (242)
....|.+|+++|..++.++ ++++.||++||+|..|+++|.+..|+ .+||++||+.||.++|++.++
T Consensus 14 ~~~~C~~C~~~I~~~e~v~-----a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC-----VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC-----BTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEE-----ECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 3457999999998877654 67999999999999999999988887 479999999999999886554
No 42
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.50 E-value=7.2e-15 Score=113.96 Aligned_cols=74 Identities=18% Similarity=0.452 Sum_probs=65.8
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCC-CCccceeeCCeeccHhhhhcccCCCcccCCCcccCCC
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELL-VDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSS 165 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L-~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~ 165 (242)
.|.+|+++|..++.++. ++++.||+.||+|..|+++| .+..|+.+++++||..||.++|+++|..+...+...+
T Consensus 10 ~C~~C~~~I~~~e~~~~----a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR----VKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGD 84 (123)
T ss_dssp CCSSSSCCCCTTCCCCC----CSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCSC
T ss_pred cccCCCCeecCCceEEE----ECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccCC
Confidence 79999999998766665 78999999999999999999 5667999999999999999999999999887766443
No 43
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.8e-14 Score=102.37 Aligned_cols=76 Identities=8% Similarity=-0.116 Sum_probs=63.1
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC-CCCcc-cCCCCCC
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG-THRNS-LNKEQNH 212 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g-~~~f~-~~d~~~y 212 (242)
.+.+||++||.++|+++|++|+++|.+.. +.+.++.||.+||.+ +..+++ +..|. ..++++|
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~--------------~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~ 66 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPF--------------MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLY 66 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCC--------------BCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceE--------------EEECCceeccccCCccCCCCccCCCCcEEEeeCCEEE
Confidence 36899999999999999999999998321 355789999999932 445675 46777 5899999
Q ss_pred CHHHHhhhhccccc
Q psy8090 213 SFDNLLKSNLKKLS 226 (242)
Q Consensus 213 C~~cy~~~~a~kc~ 226 (242)
|..||.++|++++|
T Consensus 67 C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 67 CGKCHNEVVSGPSS 80 (81)
T ss_dssp EHHHHHHHHCTTSC
T ss_pred CHHHHHHHhcCCCC
Confidence 99999999999876
No 44
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=5.7e-14 Score=99.14 Aligned_cols=60 Identities=15% Similarity=0.445 Sum_probs=52.8
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC-CccceeeCCeeccHhhhhcccCC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV-DLIYFYRGDKLYCGRHHAETLKP 152 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~~y~~~~~p 152 (242)
..|.+|+++|.+ + ++. ++++.||++||+|..|+++|. +..|+.+++++||..||.++++.
T Consensus 6 ~~C~~C~~~I~~-~-~v~----a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 6 SGCDSCEKYITG-R-VLE----AGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCSSSCCCCSS-C-CBC----CSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CCcccCCCEecC-e-eEE----eCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 379999999987 3 343 789999999999999999998 77899999999999999987764
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.43 E-value=3.6e-14 Score=110.28 Aligned_cols=61 Identities=18% Similarity=0.505 Sum_probs=53.4
Q ss_pred ccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC--CccceeeCCeeccHhhhhcccC
Q psy8090 86 PMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLK 151 (242)
Q Consensus 86 ~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~--~~~~~~~dg~~yC~~~y~~~~~ 151 (242)
...|.+|+++|.+... +. ++++.||+.||+|..|+++|. +..||.+||++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~-v~----a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFL-LY----AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSE-EE----ETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEE-EE----eCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3479999999997643 33 689999999999999999997 4689999999999999999885
No 46
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=8.9e-14 Score=99.72 Aligned_cols=63 Identities=29% Similarity=0.690 Sum_probs=54.4
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCC-ccce-eeCCeeccHhhhhcccCCCccc
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVD-LIYF-YRGDKLYCGRHHAETLKPRCSA 156 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~-~~~~-~~dg~~yC~~~y~~~~~prC~~ 156 (242)
+|.+|+++|. ++. +. ++++.||++||+|..|+++|.+ ..|+ .+++++||..||.++|++.|++
T Consensus 17 ~C~~C~~~I~-~~~-~~----a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 17 FCHGCSLLMT-GPF-MV----AGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp BCTTTCCBCC-SCC-BC----CTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred cCccCCCCcC-ceE-EE----ECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 7999999999 333 43 7899999999999999999974 5566 4899999999999999998874
No 47
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.43 E-value=7.7e-14 Score=96.17 Aligned_cols=59 Identities=22% Similarity=0.602 Sum_probs=51.7
Q ss_pred cccccCCCceecCccccccccCCCCCccc--CCcccccccCCCCCCccceeeCCeecc-Hhhhhcc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWH--PGCFTCSVCNELLVDLIYFYRGDKLYC-GRHHAET 149 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH--~~CF~C~~C~~~L~~~~~~~~dg~~yC-~~~y~~~ 149 (242)
..|.+|+++|.+++..+. ++++.|| ++||+|..|+++|.+..|+.+||++|| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~----a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT----YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEE----ETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEE----ECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 379999999997534454 7899999 999999999999999899999999999 8888754
No 48
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.4e-14 Score=98.57 Aligned_cols=58 Identities=21% Similarity=0.598 Sum_probs=51.3
Q ss_pred cccccCCCceec---CccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhc
Q psy8090 87 MFCENCEDELQT---SDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 148 (242)
Q Consensus 87 ~~C~~C~~~I~~---~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~ 148 (242)
.+|.+|+++|.+ ...++. ++++.||+.||+|..|+++|.+..|+.++|++||..||.+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA----YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE----ETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred ccCcccCCcccCCCCCceeEE----ECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 379999999996 334454 6899999999999999999998899999999999999975
No 49
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.40 E-value=1.6e-13 Score=113.07 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=93.7
Q ss_pred cCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceee------CCeeccHhhhh---cccCCCcccCCCcc
Q psy8090 91 NCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYR------GDKLYCGRHHA---ETLKPRCSACDEEC 161 (242)
Q Consensus 91 ~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~------dg~~yC~~~y~---~~~~prC~~C~~~I 161 (242)
+|.+.+..++.+|.++|.+. .|.+.|+++.++.. ++..||++++. ....++|.+|+++|
T Consensus 3 ~~~~~~~~ge~~~~~~~~g~------------~~~~l~~~l~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~C~~C~~~I 70 (182)
T 2jtn_A 3 QVPDVMVVGEPTLMGGEFGD------------EDERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHI 70 (182)
T ss_dssp CCCSCEECCCCCCCCCCCCT------------TTSCCCEEEECSCTTSSSCSSSSCSSSSSCCCCCCCSCCBCBTSSSBC
T ss_pred cccccccCCCcccccccccc------------hhHHHHHhhhccccccccCcccccccccccccCCCCCCCcCccCCCCc
Confidence 46778888999998766442 28888888888865 46789999987 55679999999999
Q ss_pred cCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCCCCCcccCCCCCCCHHHHhhhhcccccCCCCCCCC
Q psy8090 162 QTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYGTHRNSLNKEQNHSFDNLLKSNLKKLSLADSDDVS 234 (242)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~~~~~~~~~ 234 (242)
.... + +.+.++.||.+||.+ +..++++..| .+++++||..||.++|+++|+.+...+..
T Consensus 71 ~~~~-----~--------~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 71 LDRF-----I--------LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp CCSE-----E--------EEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCS
T ss_pred cCce-----e--------EEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCC
Confidence 8642 1 234789999999942 4567877776 68999999999999999999999886654
No 50
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=96.81 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCeeccHhhhhcccCCCcccCCCcccC---CCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCC
Q psy8090 137 GDKLYCGRHHAETLKPRCSACDEECQT---SSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQN 211 (242)
Q Consensus 137 dg~~yC~~~y~~~~~prC~~C~~~I~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~ 211 (242)
++++||+.||.++++++|++|+++|.+ ... + +.+.++.||.+||. .+..++.+..|...++++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~ 68 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSS----V--------VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQV 68 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCC----E--------EEETTEEEETTTCBCSSSCCBCTTSCCCEETTEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCce----e--------EEECcceeCcccCEehhcCCCCCCCccEeECCEE
Confidence 478999999999999999999999996 221 2 23478999999993 245678888899999999
Q ss_pred CCHHHHhh
Q psy8090 212 HSFDNLLK 219 (242)
Q Consensus 212 yC~~cy~~ 219 (242)
||..||.+
T Consensus 69 yC~~cy~~ 76 (77)
T 2egq_A 69 YCPDCAKK 76 (77)
T ss_dssp CCHHHHHH
T ss_pred EChHHhcc
Confidence 99999976
No 51
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.25 E-value=3.7e-12 Score=88.97 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=56.9
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKL 225 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc 225 (242)
++|+++|++|+++|.+.+.. +.+.++.||.+||. .+..++.+..|..+++++||..||.++|+++|
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~------------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRK------------MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCE------------EEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCC
T ss_pred CccCCCCccCCCcccCCceE------------EEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCC
Confidence 46889999999999975422 23378899999993 24567888889999999999999999999999
Q ss_pred cCC
Q psy8090 226 SLA 228 (242)
Q Consensus 226 ~~~ 228 (242)
+.+
T Consensus 70 ~~~ 72 (72)
T 1x4k_A 70 SSG 72 (72)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 52
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=5.2e-12 Score=87.83 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=55.5
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKL 225 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc 225 (242)
++++++|.+|+++|.+.. +.+.++.||.+||. .+..++.+..|..+++++||..||.++|++||
T Consensus 2 ~~~~~~C~~C~~~I~~~~--------------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTGG--------------VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCCCBCSSSCCBCCSSE--------------EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCCCcccCCeeccce--------------EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 467899999999997531 23478999999993 24567888889999999999999999999999
Q ss_pred cCC
Q psy8090 226 SLA 228 (242)
Q Consensus 226 ~~~ 228 (242)
+.+
T Consensus 68 ~~~ 70 (70)
T 2d8z_A 68 SSG 70 (70)
T ss_dssp TTC
T ss_pred CCC
Confidence 864
No 53
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=3.9e-12 Score=93.02 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=58.5
Q ss_pred cHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhh
Q psy8090 142 CGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLK 219 (242)
Q Consensus 142 C~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~ 219 (242)
+...+...+.++|.+|+++|.+. ++ .+.++.||.+||. .+...+.+..|..+++++||..||.+
T Consensus 16 ~~~~~~~~~~~~C~~C~~~I~~~------~v--------~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 16 AEHIPAGKRTPMCAHCNQVIRGP------FL--------VALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CEEECTTTCCCBBSSSCCBCCSC------EE--------EETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred cccCCCCCCCCCCccCCCEecce------EE--------EECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 33445677889999999999632 22 3478999999993 24567888889999999999999999
Q ss_pred hhcccccCC
Q psy8090 220 SNLKKLSLA 228 (242)
Q Consensus 220 ~~a~kc~~~ 228 (242)
+|++||+.+
T Consensus 82 ~f~~~c~s~ 90 (90)
T 2dar_A 82 FFASGPSSG 90 (90)
T ss_dssp HTSCCCCCC
T ss_pred HcCCCCCCC
Confidence 999999864
No 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=6e-12 Score=87.91 Aligned_cols=69 Identities=16% Similarity=0.057 Sum_probs=56.9
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKL 225 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc 225 (242)
++++++|.+|+++|.+.+. + +.+.++.||.+||. .+..++.+..|...++++||..||.++|++||
T Consensus 2 ~~~~~~C~~C~~~I~~~~~----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSR----K--------LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSC----E--------ECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CccCCCCccCCCccccCcc----E--------EEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcC
Confidence 4678999999999996432 1 34578999999993 24567888889999999999999999999999
Q ss_pred cCC
Q psy8090 226 SLA 228 (242)
Q Consensus 226 ~~~ 228 (242)
+.+
T Consensus 70 ~~~ 72 (72)
T 1wyh_A 70 SSG 72 (72)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 55
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.21 E-value=4e-12 Score=105.25 Aligned_cols=68 Identities=24% Similarity=0.553 Sum_probs=54.7
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC-CccceeeCCeeccHhhhhcccCCCcccCCC
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV-DLIYFYRGDKLYCGRHHAETLKPRCSACDE 159 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~-~~~~~~~dg~~yC~~~y~~~~~prC~~C~~ 159 (242)
+|.+|+++|.+.+.++. +.++.||+.||+|..|+++|. +..|+..++++||..||.++++++|...+.
T Consensus 71 ~C~~C~~~I~~~e~~i~----a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 71 ACSACGQSIPASELVMR----AQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp ECTTTCCEECTTSEEEE----ETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred ccccCCCccccCcEEEE----cCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 69999999998776665 679999999999999999995 567999999999999999999999987765
No 56
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.19 E-value=2.7e-12 Score=99.93 Aligned_cols=61 Identities=21% Similarity=0.573 Sum_probs=54.4
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCC-CCccceeeCCeeccHhhhhcccCC
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELL-VDLIYFYRGDKLYCGRHHAETLKP 152 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L-~~~~~~~~dg~~yC~~~y~~~~~p 152 (242)
.|.+|+++|.+.+.++. +.++.||++||+|..|+++| .+..|+..||++||..||.+++++
T Consensus 68 ~C~~C~~~I~~~e~~~~----a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR----VKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ECTTTCCEECTTSEEEE----ETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred ChhhcCCccCccceeEe----eCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 79999999998776665 68999999999999999999 477799999999999999988764
No 57
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=9.5e-12 Score=89.06 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=48.6
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCC-eeccHhhhhcccC
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGD-KLYCGRHHAETLK 151 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg-~~yC~~~y~~~~~ 151 (242)
+|.+|+++|.+ + ++. ++++.||++||+|..|+++|.+..+|..++ .+||..||.+.+.
T Consensus 17 ~C~~C~~~I~~-~-~v~----a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 17 RCFSCDQFIEG-E-VVS----ALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp BCTTTCCBCCS-C-CEE----ETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred cCccccCEecc-c-eEE----ECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 79999999994 3 344 789999999999999999998777777666 5799999986654
No 58
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=94.06 Aligned_cols=60 Identities=22% Similarity=0.620 Sum_probs=53.6
Q ss_pred cccccCCCceecCccccccccCCCCCccc--CCcccccccCCCCCCccceeeCCeeccHhhhhccc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWH--PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL 150 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH--~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~ 150 (242)
..|.+|+++|.+++.++. +.++.|| ++||+|..|+++|.+..|+.+||++||..||.++|
T Consensus 64 ~~C~~C~~~I~~~~~~~~----a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVT----YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CBCTTTCSBCCTTSCEEE----ETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred ccCcccCCcCCcCceEEE----CCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 379999999998666665 7899999 99999999999999889999999999998888765
No 59
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=2.3e-11 Score=84.33 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=53.2
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
+++++|.+|+++|.+.. +.+.++.||.+||. .+..++.+..|...++++||..||.++|++||+
T Consensus 3 ~~~~~C~~C~~~I~~~~--------------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGG--------------ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCCCSSSCCCCCTTC--------------EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CCcCCCcccCCEeCcce--------------EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 56799999999997531 23367999999993 245678788899999999999999999999996
No 60
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=2.3e-11 Score=87.02 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=54.7
Q ss_pred CeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCCCCCcccCCCC-CCCH
Q psy8090 138 DKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYGTHRNSLNKEQ-NHSF 214 (242)
Q Consensus 138 g~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g~~~f~~~d~~-~yC~ 214 (242)
+.+||++||.++|+++|++|+++|.+. . +.+.++.||.+||.+ +..++....|...+++ +||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~--~------------v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE--V------------VSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC--C------------EEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc--e------------EEECCceeCccCCccccCCCCCCCCCEEEeCCCCEECh
Confidence 568999999999999999999999842 1 234789999999932 3456665544444554 6999
Q ss_pred HHHhhhhccc
Q psy8090 215 DNLLKSNLKK 224 (242)
Q Consensus 215 ~cy~~~~a~k 224 (242)
.||.+.+...
T Consensus 68 ~C~~~~~~~~ 77 (81)
T 1v6g_A 68 KCSLPVSVSG 77 (81)
T ss_dssp HHHSCCSSCC
T ss_pred hhhcccCCCC
Confidence 9998765543
No 61
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=2e-11 Score=86.42 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=56.6
Q ss_pred cccCCCcccCCCcccC--CCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcc
Q psy8090 148 ETLKPRCSACDEECQT--SSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLK 223 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~ 223 (242)
++|+++|++|+++|.+ ... + +.+.++.||.+||. .+..++.+..|...++++||..||.++|++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~----~--------~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~ 69 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAK----F--------ICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTD 69 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCC----E--------EEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCC
T ss_pred CccCCCCccCCCcccCCCCce----e--------EEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCC
Confidence 4688999999999986 221 1 23478999999993 245678888899999999999999999999
Q ss_pred cccCC
Q psy8090 224 KLSLA 228 (242)
Q Consensus 224 kc~~~ 228 (242)
+|+.+
T Consensus 70 ~C~~~ 74 (76)
T 1x68_A 70 ISGPS 74 (76)
T ss_dssp SSSSS
T ss_pred cCCCC
Confidence 99865
No 62
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=5.4e-11 Score=84.05 Aligned_cols=67 Identities=4% Similarity=-0.087 Sum_probs=52.3
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.++++|.+|+++|.+.+.. +.+.++.||.+||. .+..++.+..|...++++||..||.++|+++|+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~------------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKI------------VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTC------------EEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceE------------EEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4579999999999865421 23478899999993 245677777899999999999999999999997
Q ss_pred C
Q psy8090 227 L 227 (242)
Q Consensus 227 ~ 227 (242)
+
T Consensus 77 ~ 77 (77)
T 1g47_A 77 L 77 (77)
T ss_dssp -
T ss_pred C
Confidence 4
No 63
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=1.6e-10 Score=80.66 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=53.1
Q ss_pred ccCCCcccCCCcccC--CCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccc
Q psy8090 149 TLKPRCSACDEECQT--SSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 149 ~~~prC~~C~~~I~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
.++++|.+|+++|.+ ... + +.+.++.||.+||. .+..++.+..|..+++++||..||.+.|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~----~--------~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTK----Y--------ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPS 70 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCS----C--------EECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSS
T ss_pred CCCCCCcCCCccccCCCCcc----e--------EEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCC
Confidence 567999999999986 221 1 34478999999993 2456788889999999999999999999988
Q ss_pred c
Q psy8090 225 L 225 (242)
Q Consensus 225 c 225 (242)
+
T Consensus 71 ~ 71 (72)
T 1x4l_A 71 S 71 (72)
T ss_dssp C
T ss_pred C
Confidence 5
No 64
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=1.5e-10 Score=82.62 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=52.3
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.+.++|.+|+++|.+.. +.+.++.||.+||. .+..++.+..| .+++++||..||.++|+++++
T Consensus 13 ~~~~~C~~C~~~I~~~~--------------v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQP--------------LIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCCSCC--------------CCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEecceE--------------EEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 45799999999998321 35578999999994 24567777766 889999999999999999887
Q ss_pred CC
Q psy8090 227 LA 228 (242)
Q Consensus 227 ~~ 228 (242)
.+
T Consensus 78 s~ 79 (79)
T 2cor_A 78 SG 79 (79)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=6.2e-11 Score=83.73 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=55.3
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH-HHHhhhhccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF-DNLLKSNLKK 224 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~-~cy~~~~a~k 224 (242)
..++++|.+|+++|.+++. + .+.++.||.+||. .+..++.+..|..+++++||. .||.++|++|
T Consensus 6 ~~~~~~C~~C~~~I~~~~~-----v--------~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEK-----V--------SSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTE-----E--------EETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred CCCCCCCcCCCCEeECCeE-----E--------EECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccc
Confidence 3567999999999996541 2 3367999999993 345678888899999999999 7999999999
Q ss_pred ccCC
Q psy8090 225 LSLA 228 (242)
Q Consensus 225 c~~~ 228 (242)
|+.+
T Consensus 73 c~g~ 76 (76)
T 2cu8_A 73 PSSG 76 (76)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9753
No 66
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.02 E-value=8.1e-11 Score=80.83 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=51.8
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
++++++|++|+++|.+ . + +.+.++.||.+||. .+..++.+..|...++++||..||.++|++|
T Consensus 2 ~~~~~~C~~C~~~I~~-~-----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG-R-----V--------VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCCEETTTTEECCS-C-----E--------ECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CcCCCCCcccCCEecc-e-----E--------EEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4678999999999983 2 2 24578999999994 2456788888999999999999999999986
No 67
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=8.2e-11 Score=84.28 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=51.5
Q ss_pred CCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcccccCC
Q psy8090 151 KPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLSLA 228 (242)
Q Consensus 151 ~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~~~ 228 (242)
.++|.+|+++|..+. + +.+.++.||.+||. .+..++.+ .|..+|+++||..||.++|++||+.+
T Consensus 15 ~~~C~~C~~~I~~~~-----~--------v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~~ 80 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ-----S--------LLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSSG 80 (80)
T ss_dssp CSCCTTTCCCCSSSC-----C--------EEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTTC
T ss_pred CCCCcCcCCeeCCCe-----E--------EEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCCC
Confidence 579999999998654 1 23478999999993 24456665 58899999999999999999999863
No 68
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.01 E-value=2.6e-10 Score=84.65 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=60.5
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.++++|.+|+++|.++.. + +.+.++.||.+||. .+..++.+..|..+++++||..||.++|++||+
T Consensus 3 ~~~~~C~~C~~~I~~~~~----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~ 70 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSK----E--------VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCK 70 (101)
T ss_dssp SCCCBCSSSCCBCCSSSC----E--------EEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCS
T ss_pred CCCCcCcccCCcccCCce----E--------EEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccc
Confidence 567999999999985332 1 23478999999993 245678888899999999999999999999999
Q ss_pred CCCCCCCC
Q psy8090 227 LADSDDVS 234 (242)
Q Consensus 227 ~~~~~~~~ 234 (242)
.+...+..
T Consensus 71 ~C~~~I~~ 78 (101)
T 2cup_A 71 GCFKAIVA 78 (101)
T ss_dssp SSCCBCCS
T ss_pred cCCCcccc
Confidence 99877763
No 69
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.00 E-value=2.2e-10 Score=88.52 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=58.7
Q ss_pred hhcccCC--CcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCC-CCCCcccCCCCCCCHHHHhhh
Q psy8090 146 HAETLKP--RCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESY-GTHRNSLNKEQNHSFDNLLKS 220 (242)
Q Consensus 146 y~~~~~p--rC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~-g~~~f~~~d~~~yC~~cy~~~ 220 (242)
|.++|++ +|.+|+++|.+.+. .+.+.++.||.+||.+ +...+ .+..|...++++||..||.++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~------------~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEM------------TMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCC------------CCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCce------------EEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHH
Confidence 5678888 99999999986542 1355789999999943 44566 456799999999999999999
Q ss_pred hcccccCCCCC
Q psy8090 221 NLKKLSLADSD 231 (242)
Q Consensus 221 ~a~kc~~~~~~ 231 (242)
|+++|+.+.+.
T Consensus 69 ~~~~~~~~~~~ 79 (123)
T 2l3k_A 69 TKINGGSGGSG 79 (123)
T ss_dssp HHHHTCCCCCC
T ss_pred hccccCCCCCC
Confidence 99999765433
No 70
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.98 E-value=3.1e-10 Score=79.73 Aligned_cols=63 Identities=6% Similarity=0.021 Sum_probs=51.8
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCC-CCCcccCCCCCCCHHHHhhhhccc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYG-THRNSLNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g-~~~f~~~d~~~yC~~cy~~~~a~k 224 (242)
.+|+++|++|+++|.+.. +.+.++.||.+||. .+..++. +..|..+++++||..||.+.++.+
T Consensus 2 s~~~~~C~~C~~~I~~~~--------------v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGRV--------------LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CCSCCSCSSSCCCCSSCC--------------BCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCcCCcccCCCEecCee--------------EEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 368899999999998621 35678999999993 2456777 778999999999999999998875
No 71
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.97 E-value=1.2e-10 Score=82.33 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCH-HHHhhhhcccccCC
Q psy8090 152 PRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSF-DNLLKSNLKKLSLA 228 (242)
Q Consensus 152 prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~-~cy~~~~a~kc~~~ 228 (242)
|+|.+|+++|.++. ++ .+.++.||.+||. .+..++.+..|...++++||. .||.++|++||+.+
T Consensus 1 p~C~~C~~~I~~~~-----~v--------~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C 67 (76)
T 1iml_A 1 PKCPKCDKEVYFAE-----RV--------TSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67 (76)
T ss_dssp CBCTTTSSBCCGGG-----EE--------EETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSC
T ss_pred CcCCCCCCEEECce-----EE--------EECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCc
Confidence 68999999998654 12 3368999999993 245678887899999999999 69999999999998
Q ss_pred CCC
Q psy8090 229 DSD 231 (242)
Q Consensus 229 ~~~ 231 (242)
+..
T Consensus 68 ~~~ 70 (76)
T 1iml_A 68 GGA 70 (76)
T ss_dssp CCS
T ss_pred CCc
Confidence 754
No 72
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=5.8e-10 Score=81.51 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=54.4
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
...++|.+|+++|.+.+. +.+.++.||.+||.+ +..++....|...++++||..||.++|++||+
T Consensus 13 ~~~~~C~~C~~~I~~~~~-------------v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 13 PARETCVECQKTVYPMER-------------LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SSSCBCTTTCCBCCTTSE-------------EECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCCCcCccCCCccCCcee-------------EEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 346899999999986541 234789999999932 45677777799999999999999999999997
Q ss_pred CC
Q psy8090 227 LA 228 (242)
Q Consensus 227 ~~ 228 (242)
-.
T Consensus 80 ~~ 81 (91)
T 2d8y_A 80 YD 81 (91)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=6.6e-10 Score=77.44 Aligned_cols=66 Identities=6% Similarity=-0.063 Sum_probs=52.0
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.++++|.+|+++|.+.+. + +.+.++.||.+||. .+..++.+..|...++++||..||.++|+ +|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~----~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~ 69 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGA----G--------VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGP 69 (72)
T ss_dssp SCCCCCSSSCSCCCSSSC----C--------EECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCS
T ss_pred CCCCCCccCCCccCCCce----E--------EEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCC
Confidence 568999999999986432 1 24478999999993 34567888889999999999999999985 444
Q ss_pred C
Q psy8090 227 L 227 (242)
Q Consensus 227 ~ 227 (242)
.
T Consensus 70 ~ 70 (72)
T 1x61_A 70 S 70 (72)
T ss_dssp S
T ss_pred C
Confidence 3
No 74
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=7.7e-10 Score=84.30 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=54.3
Q ss_pred CCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCCC--CCcccCCCCCCCHHHHhhhhccccc
Q psy8090 151 KPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYGT--HRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 151 ~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g~--~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.++|++|+++|.++. + +.+.++.||.+||.+ +..+++. ..|..+++++||..||.++|++||.
T Consensus 3 ~~~C~~C~~~I~~~~-----~--------~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~ 69 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY-----F--------LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGH 69 (114)
T ss_dssp CBCBSSSCSCBCSSE-----E--------EECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCS
T ss_pred CCCCcCCCCeeCCcE-----E--------EEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccC
Confidence 479999999998642 2 345789999999942 4457763 6799999999999999999999988
Q ss_pred CCCCC
Q psy8090 227 LADSD 231 (242)
Q Consensus 227 ~~~~~ 231 (242)
-+...
T Consensus 70 ~c~~~ 74 (114)
T 1j2o_A 70 MGSGG 74 (114)
T ss_dssp SCBSC
T ss_pred cCCCC
Confidence 76543
No 75
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=1.4e-10 Score=89.51 Aligned_cols=73 Identities=7% Similarity=-0.057 Sum_probs=59.6
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC--CCCcccCCCCCCCHHHHhhhhcc-
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG--THRNSLNKEQNHSFDNLLKSNLK- 223 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g--~~~f~~~d~~~yC~~cy~~~~a~- 223 (242)
++.++|++|+++|.+.. + +.+.++.||.+||.+ +..+++ +..|..+++++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~-----~--------~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~ 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF-----L--------LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSC-----C--------EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCCCcccCCEeCCcE-----E--------EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC
Confidence 56799999999998653 1 234789999999932 456776 46789999999999999999999
Q ss_pred -cccCCCCCCCC
Q psy8090 224 -KLSLADSDDVS 234 (242)
Q Consensus 224 -kc~~~~~~~~~ 234 (242)
+|+.+...+.+
T Consensus 70 ~~C~~C~~~I~~ 81 (122)
T 1m3v_A 70 GAGGSGGHMGSG 81 (122)
T ss_dssp CSSSCSSCCSCC
T ss_pred CccccCCCCcCc
Confidence 99999877664
No 76
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.94 E-value=3.5e-10 Score=78.48 Aligned_cols=65 Identities=12% Similarity=-0.036 Sum_probs=52.7
Q ss_pred ccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 149 TLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 149 ~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
.+.++|.+|+++|.+. + +.+.++.||.+||. .+..++.+..|..+++++||..||.++|+++.+
T Consensus 3 ~~~~~C~~C~~~I~~~------~--------~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR------V--------IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCCSC------C--------EEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEecce------E--------EEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 3568999999999842 1 23478999999993 245678888899999999999999999999875
Q ss_pred C
Q psy8090 227 L 227 (242)
Q Consensus 227 ~ 227 (242)
.
T Consensus 69 s 69 (70)
T 2d8x_A 69 S 69 (70)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.93 E-value=2.8e-10 Score=92.53 Aligned_cols=63 Identities=17% Similarity=0.460 Sum_probs=53.2
Q ss_pred ccccCCCceecCccccccccCCCCCcccCCcccccccCCCCC-Ccccee-eCCeeccHhhhhcccCCCc
Q psy8090 88 FCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLV-DLIYFY-RGDKLYCGRHHAETLKPRC 154 (242)
Q Consensus 88 ~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~-~~~~~~-~dg~~yC~~~y~~~~~prC 154 (242)
.|.+|+++|.+++.++. +.++.||+.||+|..|+++|. +..||. .||++||..||.+.+...+
T Consensus 67 ~C~~C~~~I~~~~~v~~----a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRR----AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS 131 (169)
T ss_dssp BCTTTCCBCCTTSEEEE----ETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-
T ss_pred cccccccccCCCcEEEE----cCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccC
Confidence 79999999998776654 689999999999999999997 445654 6899999999998876544
No 78
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.91 E-value=2.1e-10 Score=81.97 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=48.4
Q ss_pred cCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhcccccC
Q psy8090 150 LKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLSL 227 (242)
Q Consensus 150 ~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~~ 227 (242)
..++|.+|+++|.+++. +.+.++.||.+||. .+..++.+..|..+++++||..||.++|++||.-
T Consensus 6 ~~~~C~~C~~~I~~~~~-------------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~g 72 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEE-------------VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYG 72 (81)
T ss_dssp --CBCSSSCCBCSSTTE-------------EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----
T ss_pred CCCcCcCcCccccCcee-------------EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccc
Confidence 46899999999986541 23377999999993 2456788888999999999999999999999986
Q ss_pred CC
Q psy8090 228 AD 229 (242)
Q Consensus 228 ~~ 229 (242)
++
T Consensus 73 cg 74 (81)
T 1a7i_A 73 YG 74 (81)
T ss_dssp --
T ss_pred cC
Confidence 53
No 79
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=1.4e-09 Score=79.13 Aligned_cols=63 Identities=10% Similarity=-0.008 Sum_probs=51.4
Q ss_pred cCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 150 LKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 150 ~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
..++|.+|++.|.+. + +.+.++.||.+||. .+...+.+..|...++++||..||.++|++|+.
T Consensus 24 ~~~~C~~C~~~I~~~------~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA------V--------VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCSC------C--------EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEeccc------E--------EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 458999999999852 1 23477999999993 345677777888999999999999999999975
No 80
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=7.8e-10 Score=78.69 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=50.9
Q ss_pred cCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhccccc
Q psy8090 150 LKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNLKKLS 226 (242)
Q Consensus 150 ~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~kc~ 226 (242)
..++|.+|+++|.+. + +.+.++.||.+||. .+...+.+..|...++++||..||.++|++|.+
T Consensus 14 ~~~~C~~C~~~I~~~------~--------~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV------F--------VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCCSS------C--------EECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCccCc------E--------EEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 358999999999852 1 24478999999993 244567777789999999999999999999864
No 81
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.84 E-value=1.2e-09 Score=75.77 Aligned_cols=65 Identities=3% Similarity=-0.055 Sum_probs=51.3
Q ss_pred hhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcccCCCCCCCHHHHhhhhc
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNSLNKEQNHSFDNLLKSNL 222 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~~~d~~~yC~~cy~~~~a 222 (242)
|...+.++|++|+++|.+.+. + +.+.++.||.+||. .+..++....|...++++||..||.++||
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~----~--------~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEK----I--------VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCE----E--------EEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCce----E--------EEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 344678999999999997652 1 13367899999994 24567777788899999999999999886
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.77 E-value=3.5e-09 Score=81.94 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=49.1
Q ss_pred cccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccC--CCCCCC--CCCcccCCCCCCCHHHHhhhhc
Q psy8090 148 ETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRD--LPESYG--THRNSLNKEQNHSFDNLLKSNL 222 (242)
Q Consensus 148 ~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~--~~~~~g--~~~f~~~d~~~yC~~cy~~~~a 222 (242)
..++++|.+|+++|.+.. + +.+.++.||.+||.+ +..+++ +..|..+++++||..||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~-----~--------v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF-----L--------LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS-----E--------EEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcE-----E--------EEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 356789999999998642 1 244789999999943 456775 4679999999999999999885
No 83
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=73.36 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=47.0
Q ss_pred cCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCccc--CCCcc--CCCCCCCCCCcccCCCCCCC-HHHHhhh
Q psy8090 150 LKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTER--LEHQR--DLPESYGTHRNSLNKEQNHS-FDNLLKS 220 (242)
Q Consensus 150 ~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~f~--~~~~~~g~~~f~~~d~~~yC-~~cy~~~ 220 (242)
|+++|.+|+++|.+++.. +.+.++.|| .+||. .+..++.+..|..+++++|| .+||.+.
T Consensus 1 fa~~C~~C~~~I~~~~~~------------v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQR------------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCE------------EEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceE------------EEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 578999999999975322 234789999 99994 34568888899999999999 9999764
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=2.4e-08 Score=71.50 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=48.0
Q ss_pred CCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCcc--CCCCCCCCCCcc--cCCCCCCCHHHHhhhhccc
Q psy8090 151 KPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQR--DLPESYGTHRNS--LNKEQNHSFDNLLKSNLKK 224 (242)
Q Consensus 151 ~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~--~~~~~~g~~~f~--~~d~~~yC~~cy~~~~a~k 224 (242)
.++|.+|+++|...+. +.+.++.||.+||. .+..++....|. .+|+++||..||.++|+.-
T Consensus 15 ~~~C~~C~~~I~~~e~-------------v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 15 GDLCALCGEHLYVLER-------------LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp SCBCSSSCCBCCTTTB-------------CCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCcccCCCcccceE-------------EEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 4799999999976542 34578999999993 245677887777 5799999999999987753
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.59 E-value=2.5e-05 Score=45.51 Aligned_cols=28 Identities=21% Similarity=0.600 Sum_probs=24.8
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCF 119 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF 119 (242)
..|..|++.|+..+.+. +.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~-----~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN-----CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC-----SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE-----ECCeEecccCC
Confidence 37999999999988765 67999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=95.42 E-value=0.0075 Score=34.75 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=22.8
Q ss_pred CCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCc
Q psy8090 151 KPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQ 192 (242)
Q Consensus 151 ~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f 192 (242)
.++|..|++.+-+.+. +.+.++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek-------------~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK-------------VNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGC-------------CCSSSSCCCGGGC
T ss_pred CCcCCccCCEEeccee-------------EEECCeEecccCC
Confidence 5799999999976542 3447899999987
No 87
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=78.25 E-value=1.3 Score=27.32 Aligned_cols=20 Identities=5% Similarity=-0.235 Sum_probs=16.4
Q ss_pred CcccCCCCCCCHHHHhhhhc
Q psy8090 203 RNSLNKEQNHSFDNLLKSNL 222 (242)
Q Consensus 203 ~f~~~d~~~yC~~cy~~~~a 222 (242)
.|...+-||||++|+++.-.
T Consensus 21 F~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHHT
T ss_pred eEEEecCccchHHHHHHHhh
Confidence 46678999999999998743
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=72.57 E-value=4.2 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=35.7
Q ss_pred CcccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCcccCC
Q psy8090 117 GCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQTS 164 (242)
Q Consensus 117 ~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~~~ 164 (242)
.-|.|..|...+.+ .....-|..||..|..+.+. ..|..|...+...
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45788899888865 44456899999999876653 5799999988654
No 89
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.81 E-value=3.6 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=33.5
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCcccCCC
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQTSS 165 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~~~ 165 (242)
-+.|..|...+.+......=|..||..|..+.+ ...|..|...|....
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 467777877776532223567788988876544 578999999987543
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.99 E-value=2.7 Score=27.27 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=31.0
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccCC
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQTS 164 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~~ 164 (242)
=+.|..|...+.+ .....=|..||..|..+.+ ...|..|...|...
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTTTCCEESS-CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCCChHhcC-eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3667777666643 2224557788888887665 36799999988754
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.86 E-value=4.5 Score=26.54 Aligned_cols=46 Identities=13% Similarity=0.374 Sum_probs=32.7
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhcccC-----CCcccCCCcccCC
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK-----PRCSACDEECQTS 164 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~-----prC~~C~~~I~~~ 164 (242)
-+.|..|...+.+ .....=|..||..|..+.+. .+|..|...|...
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3677778777754 33335678899999876653 4899999988653
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.54 E-value=4.5 Score=29.58 Aligned_cols=45 Identities=16% Similarity=0.505 Sum_probs=24.5
Q ss_pred ccccccCCCCCCcccee-eCCeeccHhhhhcccCCCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLKPRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~-~dg~~yC~~~y~~~~~prC~~C~~~I~~~ 164 (242)
+.|..|...+.+ .... .=|..||..|....+...|..|...+...
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccc
Confidence 344444444433 2222 34555666666555557788888887543
No 93
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=63.12 E-value=8.7 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=38.8
Q ss_pred cCCcccccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCcccCCC
Q psy8090 115 HPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQTSS 165 (242)
Q Consensus 115 H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~~~ 165 (242)
-+.-|.|..|...+.+ ......|..||..|-.+.+ ...|-.|++++....
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 3677999999998876 5556689999998876544 368999998887543
No 94
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.97 E-value=8.8 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=31.9
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhcccC--CCcccCCCcccC
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--PRCSACDEECQT 163 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~--prC~~C~~~I~~ 163 (242)
-+.|..|...+.+ .....=|..||..|..+.+. ..|..|...|..
T Consensus 15 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4677888777755 33345678899998875443 689999988864
No 95
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.80 E-value=6.9 Score=26.17 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=29.6
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc--------CCCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--------KPRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--------~prC~~C~~~I~~~ 164 (242)
+.|..|...+.+ .....=|..||..|..+.+ ...|..|...|...
T Consensus 20 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 567777666644 2333456777877775432 56899999988754
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.72 E-value=34 Score=24.56 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=54.6
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCCc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSSQ 166 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~ 166 (242)
..|..|+..-...+++.- ..=++.||+.|..=.. .+ ...+.-+|..|. .|..|++.-.+..
T Consensus 8 ~~C~~C~~~g~~~~ll~C---~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~- 68 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFC---TTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSK- 68 (111)
T ss_dssp SCBTTTCCCCCTTTSEEC---SSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTT-
T ss_pred CCCcCCCCCCCCcCCeEC---CCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCC-
Confidence 468888876322222322 1346889998864321 11 134566777663 5888887644321
Q ss_pred ceeeeeecCCCCCCCCCCCcccCCCccCCCCCCCCCCcccCCCCCCCHHHHhh
Q psy8090 167 DILYYLTRDSERDLPDEYRTERLEHQRDLPESYGTHRNSLNKEQNHSFDNLLK 219 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~h~~~f~~~~~~~g~~~f~~~d~~~yC~~cy~~ 219 (242)
+.. +..|.+.||..|.-.. +.. .-++.-+|..|...
T Consensus 69 -ll~---------Cd~C~~~yH~~Cl~pp---l~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 -MLV---------CDTCDKGYHTFCLQPV---MKS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp -EEE---------CSSSCCEEEGGGSSSC---CSS----CCSSCCCCHHHHCC
T ss_pred -eeE---------CCCCCcHHhHHhcCCc---ccc----CCCCCcCCcCCcCc
Confidence 222 6778999998765321 111 12357789888543
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=59.09 E-value=7.3 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=16.7
Q ss_pred CCeeccHhhhhccc--CCCcccCCCcccC
Q psy8090 137 GDKLYCGRHHAETL--KPRCSACDEECQT 163 (242)
Q Consensus 137 dg~~yC~~~y~~~~--~prC~~C~~~I~~ 163 (242)
=|..||..|..+.+ ...|..|...|..
T Consensus 71 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 71 CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34456666654332 3678889888864
No 98
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=58.97 E-value=3.8 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=24.5
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhc
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 148 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~ 148 (242)
=.+|..|++......--..||+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3578999888766555568999999999865
No 99
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=58.39 E-value=6.9 Score=28.28 Aligned_cols=43 Identities=21% Similarity=0.494 Sum_probs=29.9
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCccc
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQ 162 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~ 162 (242)
|.|..|...+.+ .....=|..||..|..+.+. ..|..|...|.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 667777766654 33334577888888876663 58999998875
No 100
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=57.97 E-value=7.5 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=24.7
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc---------CCCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---------KPRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---------~prC~~C~~~I~~~ 164 (242)
+.|..|...+.+ .....=|..||..|..+.+ ...|..|...+...
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 445555544433 1222345556666665433 35788888888654
No 101
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.32 E-value=2.8 Score=28.20 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=17.8
Q ss_pred ccccCCCCCCccceeeCCeeccHhhhhccc
Q psy8090 121 CSVCNELLVDLIYFYRGDKLYCGRHHAETL 150 (242)
Q Consensus 121 C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~ 150 (242)
|..|+.- +.....-=||.+||.+||.+..
T Consensus 11 C~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 11 CCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred eEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 3444443 2233444477899999998754
No 102
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=56.77 E-value=6 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=27.6
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCcccC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQT 163 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~ 163 (242)
+.|..|...+.+......=|..||..|..+.+ ...|..|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45666665554421122456677887776544 3679999888764
No 103
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.13 E-value=11 Score=25.18 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=30.7
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc--------CCCcccCCCcccCCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--------KPRCSACDEECQTSS 165 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--------~prC~~C~~~I~~~~ 165 (242)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|...|....
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 6777777766542 233457778888876432 468999998887543
No 104
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=54.69 E-value=12 Score=26.59 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=37.6
Q ss_pred CCcccccccCCCCCCccceeeCC-eeccHhhhhccc--CCCcccCCCcccCCC
Q psy8090 116 PGCFTCSVCNELLVDLIYFYRGD-KLYCGRHHAETL--KPRCSACDEECQTSS 165 (242)
Q Consensus 116 ~~CF~C~~C~~~L~~~~~~~~dg-~~yC~~~y~~~~--~prC~~C~~~I~~~~ 165 (242)
+.-|.|..|...+.+ ......| ..||..|-.+.+ ...|-.|++++....
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 667999999988876 5556677 999998876554 367999998887543
No 105
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.21 E-value=6.4 Score=26.50 Aligned_cols=43 Identities=23% Similarity=0.650 Sum_probs=30.1
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCccc
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQ 162 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~ 162 (242)
+.|..|...+.+ .....=|..||..|..+.+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 567777776654 3334557788888876554 367999998875
No 106
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=53.83 E-value=10 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=36.6
Q ss_pred CCcccccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCcccCC
Q psy8090 116 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQTS 164 (242)
Q Consensus 116 ~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~~ 164 (242)
+.-|.|..|...+.+ ......|..||..|-.+.+ ...|-.|++++...
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 567999999988876 5555689999998865443 46899998887643
No 107
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.89 E-value=7.2 Score=27.80 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=10.1
Q ss_pred CCcccCCCcccCCC
Q psy8090 152 PRCSACDEECQTSS 165 (242)
Q Consensus 152 prC~~C~~~I~~~~ 165 (242)
..|..|...|....
T Consensus 59 ~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 59 SQCPLCKNDITKRS 72 (112)
T ss_dssp CCCTTTSCCCCTTT
T ss_pred CCCcCCCCcCCHhh
Confidence 37888888887543
No 108
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.42 E-value=12 Score=23.31 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.8
Q ss_pred CeeccHhhhhcccCCCcccCCCcccC
Q psy8090 138 DKLYCGRHHAETLKPRCSACDEECQT 163 (242)
Q Consensus 138 g~~yC~~~y~~~~~prC~~C~~~I~~ 163 (242)
|..||..|... ....|..|...+..
T Consensus 25 gH~fC~~Ci~~-~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 25 LHTLCSGCLEA-SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCSBTTTCSS-SSSSCSSCCSSSSC
T ss_pred CCcccHHHHcc-CCCCCCcCCcEeec
Confidence 44455555433 34678888887754
No 109
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=52.10 E-value=8.5 Score=27.48 Aligned_cols=46 Identities=17% Similarity=0.462 Sum_probs=31.6
Q ss_pred cccccccCCCCCCcccee-eCCeeccHhhhhcccC--CCcccCCCcccCC
Q psy8090 118 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--PRCSACDEECQTS 164 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~-~dg~~yC~~~y~~~~~--prC~~C~~~I~~~ 164 (242)
-+.|..|...+.+ .... .=|..||..|..+.+. ..|..|...|...
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3667777776655 3333 5678888888765543 7899999888653
No 110
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.36 E-value=10 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=30.8
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeec--cHhhhhcccCCCcccCCCcccCC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLY--CGRHHAETLKPRCSACDEECQTS 164 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~y--C~~~y~~~~~prC~~C~~~I~~~ 164 (242)
..|..|..+|... ++ -+.|..|++.+....|-..=|++. |..|-+. .--|..|+++|+.+
T Consensus 3 ~~CP~C~~~l~~~-----------~~-----~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~--~yFC~~C~~LiSkk 64 (81)
T 2jrp_A 3 ITCPVCHHALERN-----------GD-----TAHCETCAKDFSLQALCPDCRQPLQVLKACGAV--DYFCQNGHGLISKK 64 (81)
T ss_dssp CCCSSSCSCCEEC-----------SS-----EEECTTTCCEEEEEEECSSSCSCCCEEEETTEE--EECCTTTTCCCCTT
T ss_pred CCCCCCCCccccC-----------CC-----ceECccccccCCCcccCcchhhHHHHHHhcCCc--CeeeccCCCEeecc
Confidence 3688888887542 12 234666665543322222211111 3333322 23478888888764
Q ss_pred C
Q psy8090 165 S 165 (242)
Q Consensus 165 ~ 165 (242)
-
T Consensus 65 r 65 (81)
T 2jrp_A 65 R 65 (81)
T ss_dssp S
T ss_pred e
Confidence 3
No 111
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=50.48 E-value=10 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=27.9
Q ss_pred ccccCCCCCCccceeeCCeeccHhhhhc---ccCCCcccCCCcccC
Q psy8090 121 CSVCNELLVDLIYFYRGDKLYCGRHHAE---TLKPRCSACDEECQT 163 (242)
Q Consensus 121 C~~C~~~L~~~~~~~~dg~~yC~~~y~~---~~~prC~~C~~~I~~ 163 (242)
|..|+.|+....-..-=...||..|+.. +-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6667776643222233345888888865 334689999999963
No 112
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=49.06 E-value=11 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.3
Q ss_pred cccccCCCCCCccceeeCCeecc-Hhhhh
Q psy8090 120 TCSVCNELLVDLIYFYRGDKLYC-GRHHA 147 (242)
Q Consensus 120 ~C~~C~~~L~~~~~~~~dg~~yC-~~~y~ 147 (242)
.|..|+..+....-+.+||+.|| +.|..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~ 37 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACAD 37 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHH
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHc
Confidence 46778877766677889999999 56654
No 113
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=48.16 E-value=11 Score=29.17 Aligned_cols=45 Identities=13% Similarity=0.366 Sum_probs=27.2
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~~~ 164 (242)
|.|..|...+.+ .....-|..||..|..+.+. .+|..|...|...
T Consensus 19 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 566666666654 33345667777777765442 3677777766543
No 114
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=48.07 E-value=18 Score=24.53 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=29.3
Q ss_pred ccccccCCCCC--Ccccee-eCCeeccHhhhhccc---CCCcccCCCcccCCC
Q psy8090 119 FTCSVCNELLV--DLIYFY-RGDKLYCGRHHAETL---KPRCSACDEECQTSS 165 (242)
Q Consensus 119 F~C~~C~~~L~--~~~~~~-~dg~~yC~~~y~~~~---~prC~~C~~~I~~~~ 165 (242)
+.|..|-.++. +..++. .=|..||..|+.+.. ..+|..|.+.+....
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45666666553 222221 246677888876654 468999999987643
No 115
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=47.50 E-value=18 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=16.9
Q ss_pred Cee-ccHhhhhcccCCCcccCCCcccC
Q psy8090 138 DKL-YCGRHHAETLKPRCSACDEECQT 163 (242)
Q Consensus 138 g~~-yC~~~y~~~~~prC~~C~~~I~~ 163 (242)
|.. ||..|.... ..|..|...|..
T Consensus 43 gH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 43 GHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp CCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CChhHHHHhhhcC--ccCCCcCcCccC
Confidence 444 677776654 788899888864
No 116
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=47.02 E-value=11 Score=24.91 Aligned_cols=45 Identities=18% Similarity=0.516 Sum_probs=28.4
Q ss_pred cccccccCCCCCCccceee-CCeeccHhhhhcccC----CCcccCCCcccC
Q psy8090 118 CFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLK----PRCSACDEECQT 163 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~-dg~~yC~~~y~~~~~----prC~~C~~~I~~ 163 (242)
=+.|..|...+.+ ..... =|..||..|..+.+. ..|..|...+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3566777666654 33333 377788877765553 578889887543
No 117
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=45.66 E-value=11 Score=24.13 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=22.5
Q ss_pred cccccCCCCCCccceeeCCeeccHhhhhccc--CCCcccCCCcccC
Q psy8090 120 TCSVCNELLVDLIYFYRGDKLYCGRHHAETL--KPRCSACDEECQT 163 (242)
Q Consensus 120 ~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~ 163 (242)
.|..|...+.+......=|..||..|..+.+ ...|..|...|..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3444444443322222334556666654322 3678888887753
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.47 E-value=13 Score=30.70 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=37.1
Q ss_pred cCCcccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccCC
Q psy8090 115 HPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQTS 164 (242)
Q Consensus 115 H~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~~ 164 (242)
-+.-|.|..|...+.+ ......|..||..|-.+.+ ...|..|++++...
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4567999999988876 5555689999998876443 34499999988654
No 119
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=45.35 E-value=11 Score=28.99 Aligned_cols=45 Identities=16% Similarity=0.482 Sum_probs=29.6
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQT 163 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~ 163 (242)
+.|..|...+.+......=|..||..|..+.+ ...|..|...|..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 56777766665522222457788888876554 3569999988854
No 120
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=45.23 E-value=17 Score=30.32 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=9.6
Q ss_pred CCCcccCCCcccCC
Q psy8090 151 KPRCSACDEECQTS 164 (242)
Q Consensus 151 ~prC~~C~~~I~~~ 164 (242)
.++|..|+......
T Consensus 217 ~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 217 EPRCPHCNDYWPHE 230 (238)
T ss_dssp SCBCTTTCCBCCSC
T ss_pred CCCCCCCCCCCCCC
Confidence 36788888876543
No 121
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=45.01 E-value=11 Score=27.62 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=25.4
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQT 163 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~ 163 (242)
+.|..|...+.+ .....=|..||..|....+ ...|..|...|..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 445555444432 2222345667777765443 2489999988865
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=44.78 E-value=13 Score=26.82 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=31.0
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~~ 164 (242)
|.|..|...+.+ .....-|..||..|..+.+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 667777776654 3334567888888876543 46899999888654
No 123
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.66 E-value=9.6 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=30.9
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhcccC--CCcccCCCcccCC
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK--PRCSACDEECQTS 164 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~--prC~~C~~~I~~~ 164 (242)
-+.|..|...+.+ ....=|..||..|..+.+. ..|..|...|...
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3567777776655 3344577788888876544 7888898888754
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.23 E-value=45 Score=23.13 Aligned_cols=58 Identities=5% Similarity=-0.033 Sum_probs=33.2
Q ss_pred CCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccCCCCCCCCCCcccCCCCCCCHHHHhhh
Q psy8090 151 KPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRDLPESYGTHRNSLNKEQNHSFDNLLKS 220 (242)
Q Consensus 151 ~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~~~~~~g~~~f~~~d~~~yC~~cy~~~ 220 (242)
...|..|+..-......|.+ +..|.+.||..|.-.. +.......-++.-+|..|..+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~---------CD~C~~~yH~~Cl~Pp---l~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVE---------CQECHNLYHQDCHKPQ---VTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEE---------CSSSCCEEETTTSSSC---CCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEE---------CCCCCCeEcCccCCCc---ccccccCCCCCCeeCccccchh
Confidence 35688888764321112222 6779999998764321 1110011346778999997665
No 125
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.09 E-value=15 Score=24.70 Aligned_cols=46 Identities=17% Similarity=0.446 Sum_probs=29.7
Q ss_pred ccccccCCCCCCc---cceeeCCeeccHhhhhcccC-----CCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDL---IYFYRGDKLYCGRHHAETLK-----PRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~---~~~~~dg~~yC~~~y~~~~~-----prC~~C~~~I~~~ 164 (242)
+.|..|...+.+. .....=|..||..|..+.+. .+|..|...+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 5667776666442 22234577888888765542 6799999887653
No 126
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=42.46 E-value=9.7 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.541 Sum_probs=31.0
Q ss_pred cccccccCCCCCCccceee-CCeeccHhhhhccc----CCCcccCCCccc
Q psy8090 118 CFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETL----KPRCSACDEECQ 162 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~-dg~~yC~~~y~~~~----~prC~~C~~~I~ 162 (242)
-|.|..|...+.+ ..... =|..||..|..+.+ ...|..|...+.
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4778888777754 33444 38889998876554 258999998873
No 127
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=42.10 E-value=13 Score=27.10 Aligned_cols=45 Identities=13% Similarity=0.366 Sum_probs=26.8
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~~~ 164 (242)
|.|..|...+.+ .....=|..||..|..+.+. ..|..|...|...
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 566666666544 23334566777777755432 3777777777653
No 128
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=41.36 E-value=11 Score=26.60 Aligned_cols=46 Identities=28% Similarity=0.441 Sum_probs=27.1
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~~~ 164 (242)
+.|..|...+.+-.....=|..||..|..+.+. ..|..|...+...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 455555555543111133466778877764432 5799999888653
No 129
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=40.85 E-value=14 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=25.1
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCcccCC
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQTS 164 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~~~ 164 (242)
+.|..|...+.+ .....=|..||..|..+.+. ..|..|...|...
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 344455444432 22233455677777654442 4788998888754
No 130
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=40.27 E-value=8 Score=28.88 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=28.9
Q ss_pred hhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcc-cCCCccCC
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTE-RLEHQRDL 195 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~f~~~ 195 (242)
|+..-...|..|++.|..+++.+-..+..... ...-..| |..||...
T Consensus 33 yAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~---~G~~~~WyH~~Cf~~~ 80 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMF---DGKVPHWYHFSCFWKV 80 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTSEEEEEEEECSSS---SSEEEEEEEHHHHHHT
T ss_pred EeccCCccCcccCCccCCCCEEEEEEeccCCc---CCCCCeeECCccChhh
Confidence 56666789999999999888666554442111 1011234 77787543
No 131
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=39.90 E-value=15 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=6.7
Q ss_pred CCcccCCCccc
Q psy8090 152 PRCSACDEECQ 162 (242)
Q Consensus 152 prC~~C~~~I~ 162 (242)
..|..|...|.
T Consensus 44 ~~CP~Cr~~~~ 54 (55)
T 2ecm_A 44 YRCPLCSGPSS 54 (55)
T ss_dssp CCCTTSCCSSC
T ss_pred CcCCCCCCcCC
Confidence 56666666553
No 132
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.40 E-value=8.9 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.593 Sum_probs=18.3
Q ss_pred eCCeeccHhhhhccc--CCCcccCCCccc
Q psy8090 136 RGDKLYCGRHHAETL--KPRCSACDEECQ 162 (242)
Q Consensus 136 ~dg~~yC~~~y~~~~--~prC~~C~~~I~ 162 (242)
.=|..||..|..+.+ ...|..|...|.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 346677777776543 467888887775
No 133
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=39.06 E-value=8.3 Score=24.26 Aligned_cols=47 Identities=15% Similarity=0.529 Sum_probs=28.2
Q ss_pred ccccccCCCCCCc------cceeeCCeeccHhhhhccc--CCCcccCCCcccCCC
Q psy8090 119 FTCSVCNELLVDL------IYFYRGDKLYCGRHHAETL--KPRCSACDEECQTSS 165 (242)
Q Consensus 119 F~C~~C~~~L~~~------~~~~~dg~~yC~~~y~~~~--~prC~~C~~~I~~~~ 165 (242)
+.|..|...+.+. .....=|..||..|..+.+ ...|..|...|....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 4556665554321 0233456677888776443 468999998887643
No 134
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.71 E-value=8.6 Score=29.40 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=28.4
Q ss_pred hhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcc-cCCCccC
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTE-RLEHQRD 194 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~f~~ 194 (242)
|+..-+..|..|.+.|.-+.+.+-..+....... ......| |..||..
T Consensus 22 YAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~~-~G~~~~W~H~~Cf~~ 70 (134)
T 2cs2_A 22 YAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQ-LGMIDRWYHPGCFVK 70 (134)
T ss_dssp ECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCTT-TCEEEEEECHHHHHH
T ss_pred EeCCCCccchhcCCcccCCCeEEEEEecccccCC-CCCcceeECcCcChh
Confidence 5555568999999999998876655443211111 1011235 6778853
No 135
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.29 E-value=48 Score=24.12 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=42.0
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCccceeeCCeeccHhhhhcccCCCcccCCCcccCCCc
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEECQTSSQ 166 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~ 166 (242)
..|..|+. +++++.- ++..-.+.||..|.. |.. .-+|.-||..| .|..|++....
T Consensus 16 ~~C~~C~~---~G~ll~C-D~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~~~--- 70 (107)
T 4gne_A 16 DYCFQCGD---GGELVMC-DKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAAVS--- 70 (107)
T ss_dssp SSCTTTCC---CSEEEEC-CSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBCCE---
T ss_pred CCCCcCCC---CCcEeEE-CCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCCCc---
Confidence 36888884 3555443 111234689988763 322 23578889887 58888887541
Q ss_pred ceeeeeecCCCCCCCCCCCcccCCCc
Q psy8090 167 DILYYLTRDSERDLPDEYRTERLEHQ 192 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~h~~~f 192 (242)
.+..|-+.+|.+|+
T Consensus 71 ------------~C~~Cp~sfC~~c~ 84 (107)
T 4gne_A 71 ------------FCEFCPHSFCKDHE 84 (107)
T ss_dssp ------------ECSSSSCEECTTTC
T ss_pred ------------CcCCCCcchhhhcc
Confidence 14556677776654
No 136
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.68 E-value=18 Score=23.02 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=27.9
Q ss_pred ccccccCC-CCCCcc---ceeeCCeeccHhhhhccc---CCCcccCCCcccCCC
Q psy8090 119 FTCSVCNE-LLVDLI---YFYRGDKLYCGRHHAETL---KPRCSACDEECQTSS 165 (242)
Q Consensus 119 F~C~~C~~-~L~~~~---~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~~~ 165 (242)
+.|..|.. .+.+.. ....=|..||..|..+.+ ..+|..|...+....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 44566655 332211 122446677887776553 357999999987644
No 137
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=37.62 E-value=21 Score=28.50 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=34.6
Q ss_pred CCcccccccCCCCCCccceeeCCeeccHhhhhccc---CCCcccCCCcccCC
Q psy8090 116 PGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL---KPRCSACDEECQTS 164 (242)
Q Consensus 116 ~~CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~---~prC~~C~~~I~~~ 164 (242)
|.-|.|..|...+.+ ......|..||..|-...+ +..|..|++++...
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 556888888887766 5555788999988765433 34699999887653
No 138
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.47 E-value=27 Score=23.00 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=14.9
Q ss_pred ccHhhhhcccCCCcccCCCcccC
Q psy8090 141 YCGRHHAETLKPRCSACDEECQT 163 (242)
Q Consensus 141 yC~~~y~~~~~prC~~C~~~I~~ 163 (242)
||..|.... .+|..|...|..
T Consensus 48 ~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 48 TCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp BCHHHHHHC--SBCTTTCCBCCC
T ss_pred HHHHHhhCC--CCCccCCceecC
Confidence 566665432 789999998875
No 139
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=36.41 E-value=51 Score=21.19 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=32.9
Q ss_pred CCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccCCCCCCCCCCcccCCCCCCCHHHHhhhhcc
Q psy8090 152 PRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRDLPESYGTHRNSLNKEQNHSFDNLLKSNLK 223 (242)
Q Consensus 152 prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~~~~~~g~~~f~~~d~~~yC~~cy~~~~a~ 223 (242)
..|..|+..-......|.. +..|.+.||..|.-.. +.. ..+.-++.-+|..|-.+.-++
T Consensus 7 ~~C~vC~~~~~~~~~~ll~---------Cd~C~~~~H~~C~~p~---l~~-~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVI---------CDKCGQGYHQLCHTPH---IDS-SVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEE---------CSSSCCEEETTTSSSC---CCH-HHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCEEE---------CCCCChHHHhhhCCCc---ccc-cccCCCCCEECCCCcCccccC
Confidence 4688888653322222222 6778999998764321 111 001135678999997765433
No 140
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=35.76 E-value=13 Score=27.62 Aligned_cols=46 Identities=7% Similarity=0.027 Sum_probs=27.8
Q ss_pred hhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcc-cCCCccC
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTE-RLEHQRD 194 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~f~~ 194 (242)
|++.-...|..|++.|..+++.+-..+.. ..+ ......| |..||..
T Consensus 15 YAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~--~~~-dG~~~~W~H~~Cf~~ 61 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKENFRLGKLVQS--THF-DGIMPMWNHASCILK 61 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSSEEEEECCCC--SSS-SCCCCEEEEHHHHHT
T ss_pred EeCCCCCCchhhCCccCCCCEEEEEEecC--ccc-CCCcceeECccccch
Confidence 55555689999999999888655444332 111 1112345 6778754
No 141
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=35.13 E-value=9.8 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.543 Sum_probs=19.4
Q ss_pred CCeeccHhhhhccc--CCCcccCCCcccCCC
Q psy8090 137 GDKLYCGRHHAETL--KPRCSACDEECQTSS 165 (242)
Q Consensus 137 dg~~yC~~~y~~~~--~prC~~C~~~I~~~~ 165 (242)
=|..||..|..+.+ ...|..|...+....
T Consensus 35 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 35 CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 35567777765432 368999988887543
No 142
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=34.76 E-value=11 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=19.7
Q ss_pred hhcccCCCcccCCCcccCCCcceeeee
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYL 172 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~ 172 (242)
|+..-...|.+|++.|.-+++.+-..+
T Consensus 10 YAkSgRA~Ck~C~~kI~KgeLRiG~~v 36 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIVKGVCRIGKVV 36 (117)
T ss_dssp ECCSSCEECTTSSCEECTTCEEEEEEE
T ss_pred EeCCCCccchhhCcccCCCCeEEEEEe
Confidence 444556789999999998886655544
No 143
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.93 E-value=28 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=14.7
Q ss_pred eeccHhhhhccc--CCCcccCCCcccCC
Q psy8090 139 KLYCGRHHAETL--KPRCSACDEECQTS 164 (242)
Q Consensus 139 ~~yC~~~y~~~~--~prC~~C~~~I~~~ 164 (242)
..||..|..+.+ ...|-.|...|...
T Consensus 38 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 38 HLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 344444443322 25788888887654
No 144
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=33.49 E-value=13 Score=27.15 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=28.5
Q ss_pred hhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcc-cCCCccC
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTE-RLEHQRD 194 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~f~~ 194 (242)
|+..-+.+|..|++.|.-+.+.+-..+..... ...-..| |..||..
T Consensus 20 yAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~---~g~~~~W~H~~Cf~~ 66 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMF---DGKVPHWYHFSCFWK 66 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCEEEEEEEEETTT---TEEEEEEEETTHHHH
T ss_pred EeCCCCCcchhhCCccCCCCEEEEEEecCCCC---CCCcCEeECcCccch
Confidence 55566689999999999988666555432111 1011234 7888854
No 145
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=33.23 E-value=6.4 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred HHHHhcCCCCCCCCcCChhHHHH
Q psy8090 12 HLYFSSLPEDKVPYVNSPGEQYR 34 (242)
Q Consensus 12 ~~y~~~lp~~~~p~~~s~g~~~r 34 (242)
++||.+||.+-+-++=..|+.|.
T Consensus 87 EeYF~tLp~nT~lmvL~~gq~W~ 109 (122)
T 1d4b_A 87 EDFFQLLEDDTCLMVLQSGQSWS 109 (122)
T ss_dssp THHHHHSSSCCCCCEECSSCCCC
T ss_pred hhHhhcCCCCCEEEEecCCCccc
Confidence 78999999999999888888774
No 146
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=32.81 E-value=7.4 Score=29.69 Aligned_cols=44 Identities=27% Similarity=0.530 Sum_probs=31.7
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhcccC---CCcccCCCccc
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK---PRCSACDEECQ 162 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~~---prC~~C~~~I~ 162 (242)
=|.|..|...+.+ .....-|..||..|..+.+. ..|..|...|.
T Consensus 31 ~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 31 KYLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4778888877755 34446688899988876554 57999987764
No 147
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.50 E-value=33 Score=20.83 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=16.0
Q ss_pred ccccccCCCCCCccceeeCCeeccHhhhhcc
Q psy8090 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAET 149 (242)
Q Consensus 119 F~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~ 149 (242)
+.|..|...+.+ .....=|..||..|..+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKE-PVIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSS-CCCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCc-cEeCCCCCccCHHHHHHH
Confidence 455666555543 222334566777766544
No 148
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.05 E-value=42 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=23.6
Q ss_pred CCCCcccCCcccccccCC-CCCCcccee--eCCeeccHhhhhc
Q psy8090 109 GPNSCWHPGCFTCSVCNE-LLVDLIYFY--RGDKLYCGRHHAE 148 (242)
Q Consensus 109 ~~~~~wH~~CF~C~~C~~-~L~~~~~~~--~dg~~yC~~~y~~ 148 (242)
+....+|+ ..|..|++ ++.+..|-- -.+--+|..||..
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 33566777 77888875 366544432 1245678888875
No 149
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=32.05 E-value=37 Score=20.42 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=8.0
Q ss_pred ccccCCCceecCc
Q psy8090 88 FCENCEDELQTSD 100 (242)
Q Consensus 88 ~C~~C~~~I~~~~ 100 (242)
.|.-|...+..++
T Consensus 7 ~C~IC~~~~~~~~ 19 (55)
T 1iym_A 7 ECAVCLAELEDGE 19 (55)
T ss_dssp CCTTTCCCCCTTS
T ss_pred cCccCCccccCCC
Confidence 5777776665543
No 150
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=31.70 E-value=20 Score=25.94 Aligned_cols=71 Identities=14% Similarity=0.456 Sum_probs=47.1
Q ss_pred cccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCCc------cceeeCCeeccHhhhhccc--CCCcccCC
Q psy8090 87 MFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVDL------IYFYRGDKLYCGRHHAETL--KPRCSACD 158 (242)
Q Consensus 87 ~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~~------~~~~~dg~~yC~~~y~~~~--~prC~~C~ 158 (242)
..|..|++.+....... ...-..=+.|..|...+... .....=|..||..|..+.+ ...|-.|.
T Consensus 49 ~~CP~Cr~~~~~~~l~~--------l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 120 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHP--------IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120 (133)
T ss_dssp SBCTTTCCBCTTTCEEE--------CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCCcCccccccc--------cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCC
Confidence 37999999987654321 12234557788888776431 1233458899999986543 47899999
Q ss_pred CcccCCC
Q psy8090 159 EECQTSS 165 (242)
Q Consensus 159 ~~I~~~~ 165 (242)
..|....
T Consensus 121 ~~~~~~~ 127 (133)
T 4ap4_A 121 KKINHKR 127 (133)
T ss_dssp CBCCGGG
T ss_pred CcCChhc
Confidence 9987643
No 151
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.32 E-value=3.8 Score=29.33 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHhcCCCCCCCCcCChhHHHH
Q psy8090 12 HLYFSSLPEDKVPYVNSPGEQYR 34 (242)
Q Consensus 12 ~~y~~~lp~~~~p~~~s~g~~~r 34 (242)
++||.+||.+-+-++=..|+.|.
T Consensus 62 EeyF~tLp~nT~lmvL~~ge~W~ 84 (91)
T 2eel_A 62 EEFFQTLGDNTHFMILEKGQKWM 84 (91)
T ss_dssp HHHHTTSCSSEEEEEEETTCCCC
T ss_pred hhhhhhCCCCCEEEEEcCCCccC
Confidence 78999999998877766776653
No 152
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=31.01 E-value=29 Score=22.31 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=35.1
Q ss_pred cccccccCCCCCCcccee-eCCeeccHhhhhcccC--CCcccCCCcccCCC
Q psy8090 118 CFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--PRCSACDEECQTSS 165 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~-~dg~~yC~~~y~~~~~--prC~~C~~~I~~~~ 165 (242)
-|.|..+++.+.+ .... .+|..|+..+-.+.+. .+|-..++++...+
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 3889999998876 5666 7999999988765543 45888888876543
No 153
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=29.97 E-value=13 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=18.9
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhcc
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAET 149 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~ 149 (242)
=.+|..|++..... |+.+|..|+.+.
T Consensus 163 ~~~C~~CGE~~~~~------g~~~C~~C~~~~ 188 (191)
T 3d00_A 163 IVLCPQCREAYPAQ------DGELCLSCQGGS 188 (191)
T ss_dssp EEECTTTCCEEEGG------GCSSCHHHHTTC
T ss_pred CEECCcCCCChhhC------CCcCCccccCCC
Confidence 35788888766442 788999998754
No 154
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.50 E-value=41 Score=21.73 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCeeccHhhhhccc--CCCcccCCCcccC
Q psy8090 137 GDKLYCGRHHAETL--KPRCSACDEECQT 163 (242)
Q Consensus 137 dg~~yC~~~y~~~~--~prC~~C~~~I~~ 163 (242)
=+..||..|..+.+ ...|-.|...|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 35667777765432 3679999888764
No 155
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=26.88 E-value=7.6 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=19.6
Q ss_pred hhcccCCCcccCCCcccCCCcceeeee
Q psy8090 146 HAETLKPRCSACDEECQTSSQDILYYL 172 (242)
Q Consensus 146 y~~~~~prC~~C~~~I~~~~~~~~~~~ 172 (242)
|+..-...|.+|++.|..+.+.+-..+
T Consensus 14 yAkS~Ra~Ck~C~~kI~Kg~lRig~~~ 40 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIEKGQVRLSKKM 40 (111)
T ss_dssp ECSSSCCBCTTTCCBCCTTCEEEEEEE
T ss_pred EeecCCccccccCCCccCCceEEeEEe
Confidence 455556889999999998876554443
No 156
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.14 E-value=21 Score=29.86 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhccCCCcccccccccccccCCCceecCccccccccCCCCCcccCCcccccccCCCCCC
Q psy8090 62 ELRLFSAQRKREALGRGFVKQLVAPMFCENCEDELQTSDMSVFASRAGPNSCWHPGCFTCSVCNELLVD 130 (242)
Q Consensus 62 ~~~~f~~~~~~~~~g~g~v~~~~~~~~C~~C~~~I~~~~~~v~~~r~~~~~~wH~~CF~C~~C~~~L~~ 130 (242)
-+..|...|+.. -|.|.|.. ....|.+|+-.|.+....-. + . ...=.+|..||+-|..
T Consensus 177 lL~~Yerir~~~-~g~avv~v--~~~~C~GC~~~lppq~~~~i--~-~-----~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 177 IYSFYERIRRWA-KNTSIVTI--KKQACGGCFIRLNDKIYTEV--L-T-----SGDMITCPYCGRILYA 234 (256)
T ss_dssp HHHHHHHHHHHH-GGGSEEEC--BTTBCTTTCCBCCHHHHHHH--H-H-----SSSCEECTTTCCEEEC
T ss_pred HHHHHHHHHHhC-CCceEEEe--eCCccCCCCeeeCHHHHHHH--H-C-----CCCEEECCCCCeeEEe
Confidence 345555555432 25554433 23479999999988644321 1 1 2334789999988853
No 157
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.98 E-value=23 Score=22.24 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=20.2
Q ss_pred cccccccCCCCCCccceeeCCeeccHhhhhccc
Q psy8090 118 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL 150 (242)
Q Consensus 118 CF~C~~C~~~L~~~~~~~~dg~~yC~~~y~~~~ 150 (242)
=+.|..|...+.+ .....=|..||..|..+.+
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHH
Confidence 3667777776654 3333557778888876544
No 158
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=23.95 E-value=46 Score=21.14 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=15.9
Q ss_pred CeeccHhhhhccc--CCCcccCCCcccC
Q psy8090 138 DKLYCGRHHAETL--KPRCSACDEECQT 163 (242)
Q Consensus 138 g~~yC~~~y~~~~--~prC~~C~~~I~~ 163 (242)
|..||..|..+.+ ...|..|...|..
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4455666654322 3578888888764
No 159
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=23.29 E-value=1.3e+02 Score=23.76 Aligned_cols=10 Identities=20% Similarity=0.886 Sum_probs=7.5
Q ss_pred ccccccCCCc
Q psy8090 86 PMFCENCEDE 95 (242)
Q Consensus 86 ~~~C~~C~~~ 95 (242)
...|.+|+..
T Consensus 137 ~~~Cp~C~~~ 146 (178)
T 3po3_S 137 RFTCGKCKEK 146 (178)
T ss_dssp SSCCSSSCCS
T ss_pred CcCCCCCCCC
Confidence 3469999975
No 160
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.24 E-value=22 Score=24.12 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=17.3
Q ss_pred CCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCc
Q psy8090 152 PRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQ 192 (242)
Q Consensus 152 prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f 192 (242)
..|+.|...|+.+.. +..|+..+|..|+
T Consensus 16 ~~C~IC~~~i~~g~~-------------C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 16 KICNICHSLLIQGQS-------------CETCGIRMHLPCV 43 (74)
T ss_dssp CBCSSSCCBCSSSEE-------------CSSSCCEECHHHH
T ss_pred CcCcchhhHcccCCc-------------cCCCCchhhHHHH
Confidence 567778777775431 3346666666655
No 161
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.78 E-value=40 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=32.3
Q ss_pred CcccccccCCCCCCcccee-eCCeeccHhhhhcccC--------CCccc--CCCc-cc
Q psy8090 117 GCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK--------PRCSA--CDEE-CQ 162 (242)
Q Consensus 117 ~CF~C~~C~~~L~~~~~~~-~dg~~yC~~~y~~~~~--------prC~~--C~~~-I~ 162 (242)
.=|.|..|...+.+ .... ..|..||..|-.+.+. ..|-. |.+. +.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 34889999988876 5566 5899999988655442 47877 7655 44
No 162
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.56 E-value=36 Score=22.58 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.2
Q ss_pred cccccCCCce
Q psy8090 87 MFCENCEDEL 96 (242)
Q Consensus 87 ~~C~~C~~~I 96 (242)
+.|..|++.+
T Consensus 16 ~rC~~C~kkv 25 (64)
T 1wfh_A 16 NRCTVCRKRV 25 (64)
T ss_dssp CCCTTTCCCC
T ss_pred CcChhhCCcc
Confidence 3455555544
No 163
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.53 E-value=80 Score=22.73 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=23.9
Q ss_pred eCCeeccHhhhhcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCc
Q psy8090 136 RGDKLYCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQ 192 (242)
Q Consensus 136 ~dg~~yC~~~y~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f 192 (242)
..+.-+|.+|- .|..|+..-...+ .+. .+..|.+.||..|.
T Consensus 52 ~~~~W~C~~C~------~C~vC~~~~~~~~-~ll---------~Cd~C~~~yH~~Cl 92 (112)
T 3v43_A 52 KALRWQCIECK------TCSSCRDQGKNAD-NML---------FCDSCDRGFHMECC 92 (112)
T ss_dssp HTSCCCCTTTC------CBTTTCCCCCTTC-CCE---------ECTTTCCEECGGGC
T ss_pred hccccccccCC------ccccccCcCCCcc-ceE---------EcCCCCCeeecccC
Confidence 45566777663 5888876532211 111 15668888887754
No 164
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=22.09 E-value=68 Score=18.63 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHhcCCCCCCC
Q psy8090 4 PSKRCSMVHLYFSSLPEDKVP 24 (242)
Q Consensus 4 ~~~~~~~~~~y~~~lp~~~~p 24 (242)
|-|+++-.....+.||++.+-
T Consensus 12 pPLSQETFsdLW~LLP~~~il 32 (39)
T 2k8f_B 12 PPLSQETFSDLWKLLPENNVL 32 (39)
T ss_dssp CCCSCHHHHHHHHTCSSSCCC
T ss_pred CCccHHHHHHHHHhCCccccc
Confidence 457888899999999999774
No 165
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=21.14 E-value=20 Score=29.70 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred hcccCCCcccCCCcccCCCcceeeeeecCCCCCCCCCCCcccCCCccCC
Q psy8090 147 AETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRDL 195 (242)
Q Consensus 147 ~~~~~prC~~C~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~f~~~ 195 (242)
++.-...|.+|.+.|..+.+.|-..+.......-....+=+|.+||...
T Consensus 139 AKS~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~~ 187 (223)
T 4av1_A 139 AKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKN 187 (223)
T ss_dssp -------------------------------------------------
T ss_pred eccCCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhch
Confidence 4444578999999999887655443311110000111122388888653
No 166
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.49 E-value=65 Score=21.54 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=14.5
Q ss_pred ccHhhhhcccCCCcccCCCcccC
Q psy8090 141 YCGRHHAETLKPRCSACDEECQT 163 (242)
Q Consensus 141 yC~~~y~~~~~prC~~C~~~I~~ 163 (242)
+|..|.... ..|..|...|..
T Consensus 41 ~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 41 CCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCHHHHTTC--SBCTTTCCBCCE
T ss_pred HHHHHHHhc--CcCCCCCchhhC
Confidence 566665533 389999998875
Done!