RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8090
         (242 letters)



>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 30.4 bits (69), Expect = 0.014
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 119 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP 152
           F C+ C +   + +++    + YC         P
Sbjct: 1   FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34


>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 27.5 bits (60), Expect = 1.6
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 141 YCGRHHAETLKPRCSACDEECQTSSQDILYYLTRDSERDLPDEYRTERLEHQRDLPESY- 199
                  E  K                I+++ + +  +D P    T       D  +S  
Sbjct: 194 MKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDHSKSPF 253

Query: 200 ------GTHRNSLNKEQNHSFDNLLKSNLKKLSL 227
                 G  +N     QN  FD + ++ + K +L
Sbjct: 254 MRKGTAGDWKNYFTVAQNEKFDAIYETEMSKTAL 287


>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 24.0 bits (52), Expect = 2.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 121 CSVCNELLVDLIYFYRGDKLYCGRH 145
           C+ C   L    +F+  D++YC +H
Sbjct: 2   CTDCGTNLKQKGHFFVEDQIYCEKH 26


>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 31

 Score = 24.0 bits (52), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 121 CSVCNELLVDLIYFYRGDKLYCGRH 145
           C+ CN  L    YF+   +LYC  H
Sbjct: 2   CADCNLNLKQKGYFFVEGELYCETH 26


>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 24.1 bits (52), Expect = 2.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 111 NSCWHPGCF 119
           N+ WHP CF
Sbjct: 17  NNSWHPECF 25


>d1g3ma_ c.37.1.5 (A:) Estrogen sulfotransferase (STE, sult1e1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 290

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 161 CQTSSQDILYYLTRDSERDLPDEYRTERLEHQRDLPESY-------GTHRNSLNKEQNHS 213
            +     I+++ +    ++ P    T   +   +   S        G  +N      N  
Sbjct: 213 SEELVDRIIHHTSFQEMKNNPSTNYTTLPDEIMNQKLSPFMRKGITGDWKNHFTVALNEK 272

Query: 214 FDNLLKSNLKKLSL 227
           FD   +  +K+ +L
Sbjct: 273 FDKHYEQQMKESTL 286


>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 284

 Score = 26.0 bits (56), Expect = 4.7
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 200 GTHRNSLNKEQNHSFDNLLKSNLKKLSL 227
           G  +N     Q   FD L +  +  L  
Sbjct: 251 GDWKNHFTVAQAEDFDKLFQEKMADLPR 278


>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
           FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 23.5 bits (50), Expect = 4.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 120 TCSVCNELLVDLIYFYRGDKLYCGRHH 146
           TCS C +++    +F +G+  YC   H
Sbjct: 1   TCSNCKQVIGTGSFFPKGEDFYCVTCH 27


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 23.5 bits (51), Expect = 4.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 121 CSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR 153
           CS CN  L    Y     ++YC  H  +  K +
Sbjct: 2   CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34


>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
          subtilis [TaxId: 1423]}
          Length = 330

 Score = 25.6 bits (55), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 17 SLPEDKVPYVNSPGEQYRI 35
          SLP++K+PY+   GE  R 
Sbjct: 4  SLPKEKMPYLLRSGEGERY 22


>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 74

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 121 CSVCNELLVDLIYFYRGDKLYCGRH 145
           C +C + +    +  R   L+CG H
Sbjct: 28  CFMCRKKVGLTGFDCRCGNLFCGLH 52


>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
           (Spodoptera frugiperda) [TaxId: 7108]}
          Length = 342

 Score = 25.0 bits (53), Expect = 9.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 200 GTHRNSLNKEQNHSFDNLLKSNLKKLSL 227
           G  R+  ++E     +  +K NLK   L
Sbjct: 310 GCWRDYFDEEMTKQAEKWIKDNLKDTDL 337


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 917,981
Number of extensions: 43714
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 35
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)