Query psy8093
Match_columns 148
No_of_seqs 131 out of 753
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.6 7.8E-16 1.7E-20 129.8 4.7 75 70-146 13-96 (272)
2 KOG3071|consensus 99.5 7.2E-14 1.6E-18 118.7 7.3 77 69-147 17-93 (274)
3 PF01151 ELO: GNS1/SUR4 family 99.5 6.5E-14 1.4E-18 115.3 6.5 60 78-138 1-60 (250)
4 KOG3072|consensus 99.0 2.9E-10 6.2E-15 97.3 4.4 64 72-137 29-92 (282)
5 PF06210 DUF1003: Protein of u 57.8 41 0.00088 25.2 5.8 54 80-136 1-54 (108)
6 COG5548 Small integral membran 49.9 12 0.00027 28.2 1.9 19 93-112 64-82 (105)
7 PF11071 DUF2872: Protein of u 49.0 6.6 0.00014 31.2 0.4 15 45-59 78-92 (141)
8 TIGR03646 YtoQ_fam YtoQ family 47.3 7.2 0.00016 31.0 0.3 15 45-59 81-95 (144)
9 PF01357 Pollen_allerg_1: Poll 42.2 7.2 0.00016 27.3 -0.3 25 1-29 43-67 (82)
10 PLN00115 pollen allergen group 29.8 25 0.00053 26.9 0.8 26 1-30 64-90 (118)
11 COG4420 Predicted membrane pro 28.8 1.6E+02 0.0035 24.5 5.4 54 80-136 55-108 (191)
12 PF15048 OSTbeta: Organic solu 26.6 99 0.0021 24.1 3.6 24 87-111 42-65 (125)
13 PF05728 UPF0227: Uncharacteri 23.7 38 0.00081 27.1 0.9 13 34-46 3-15 (187)
14 PRK04940 hypothetical protein; 22.3 41 0.00089 27.3 0.8 12 34-45 3-14 (180)
15 PRK09173 F0F1 ATP synthase sub 21.5 37 0.00081 25.9 0.5 30 81-110 3-36 (159)
16 PF10777 YlaC: Inner membrane 21.3 73 0.0016 25.7 2.1 72 57-134 8-81 (155)
17 PF02313 Fumarate_red_D: Fumar 21.1 32 0.00068 26.6 -0.0 9 1-9 5-13 (118)
18 PF09945 DUF2177: Predicted me 20.0 3.4E+02 0.0073 20.9 5.5 54 85-142 44-100 (128)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.59 E-value=7.8e-16 Score=129.85 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=65.2
Q ss_pred CCCccccccCcCCchhHHHHHHHHhhhhhhccchhccc----CCCCC-cchhHHHHhHHHHHHHHHHHHHHHH----HHH
Q psy8093 70 CDPRMKEYFLMDTPVPMLVTLASYIFFVNYLGPKLMEN----RKPFN-LSTIIKIYNVAQMTCNFYLVYVQWN----NCY 140 (148)
Q Consensus 70 ~Dprt~~WpLm~Sp~~~i~I~v~YL~~V~~~Gpk~MKn----RkPf~-Lk~lLilYNl~qvlfS~ym~~e~~~----~~~ 140 (148)
..+|+++| +++||++++.++++|+++| +.||++||+ |||++ ||+++++||++|+++|++++++++. ..+
T Consensus 13 ~~~~~~~w-l~~~~~~~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~ 90 (272)
T PTZ00251 13 DGHAVQKW-LASNVDICVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLR 90 (272)
T ss_pred CcHHHHHH-HHhCCHHHHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999 7899999999999999999 599999975 99999 9999999999999999999999863 444
Q ss_pred hCCccc
Q psy8093 141 IRRLWS 146 (148)
Q Consensus 141 ~~~~~~ 146 (148)
..|.|+
T Consensus 91 ~~g~~~ 96 (272)
T PTZ00251 91 KYGLHD 96 (272)
T ss_pred hcCcce
Confidence 455444
No 2
>KOG3071|consensus
Probab=99.48 E-value=7.2e-14 Score=118.73 Aligned_cols=77 Identities=31% Similarity=0.543 Sum_probs=69.2
Q ss_pred CCCCccccccCcCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy8093 69 GCDPRMKEYFLMDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYVQWNNCYIRRLWSV 147 (148)
Q Consensus 69 ~~Dprt~~WpLm~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e~~~~~~~~~~~~v 147 (148)
..|++++ ||++++++++..++++|+ +|+..||++|+||||++||+++.+||++|+++|++++.+.....+..+.|+.
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l 93 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNL 93 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccce
Confidence 3566666 889999999999999999 6669999999999999999999999999999999999998888888777663
No 3
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.48 E-value=6.5e-14 Score=115.34 Aligned_cols=60 Identities=38% Similarity=0.760 Sum_probs=56.3
Q ss_pred cCcCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHHHHHH
Q psy8093 78 FLMDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYVQWNN 138 (148)
Q Consensus 78 pLm~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e~~~~ 138 (148)
.|++||++++.++++|+++| +.||++||+|||++||.++.+||++|+++|++|+++++..
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~ 60 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPA 60 (250)
T ss_pred CcccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 04689999999999999999 8999999999999999999999999999999999999843
No 4
>KOG3072|consensus
Probab=99.01 E-value=2.9e-10 Score=97.30 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=54.5
Q ss_pred CccccccCcCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHHHHH
Q psy8093 72 PRMKEYFLMDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYVQWN 137 (148)
Q Consensus 72 prt~~WpLm~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e~~~ 137 (148)
.++..|+ .+++...+.++++|+++| ++|+++|+|||||+|+++|.+||.++++||+..+.+++.
T Consensus 29 ~~~~~~~-~~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~ 92 (282)
T KOG3072|consen 29 ESVVKFF-QEHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIP 92 (282)
T ss_pred HHHHHHH-HhccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3345553 456667899999999999 899999999999999999999999999999997776553
No 5
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.81 E-value=41 Score=25.16 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=34.7
Q ss_pred cCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHHHH
Q psy8093 80 MDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYVQW 136 (148)
Q Consensus 80 m~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e~~ 136 (148)
++|+..++..+++.++.+ ....+.-.+++|+--. .++-|+++++.+++.+--++
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~Il 54 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPLIL 54 (108)
T ss_pred CCcHHHHHHHHHHHHHHH--HHHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHHHH
Confidence 367777777666666665 2333333335566433 78889999999888765544
No 6
>COG5548 Small integral membrane protein [Function unknown]
Probab=49.86 E-value=12 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=15.0
Q ss_pred HhhhhhhccchhcccCCCCC
Q psy8093 93 YIFFVNYLGPKLMENRKPFN 112 (148)
Q Consensus 93 YL~~V~~~Gpk~MKnRkPf~ 112 (148)
=++.+ +.++|+|+.|||.-
T Consensus 64 ~~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 64 AALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred HHHHH-hcchhccccCCCcc
Confidence 34455 78999999999975
No 7
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=49.03 E-value=6.6 Score=31.15 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=13.0
Q ss_pred CCCccccccHHHHHH
Q psy8093 45 GLRGDQKGNRQYLVD 59 (148)
Q Consensus 45 ~~~~~~~~~~~~~~~ 59 (148)
-|-||+||||+.+.|
T Consensus 78 vrFGekYKQWNaAfD 92 (141)
T PF11071_consen 78 VRFGEKYKQWNAAFD 92 (141)
T ss_pred EEechHHHHHHHHhh
Confidence 367999999999877
No 8
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=47.32 E-value=7.2 Score=31.02 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.0
Q ss_pred CCCccccccHHHHHH
Q psy8093 45 GLRGDQKGNRQYLVD 59 (148)
Q Consensus 45 ~~~~~~~~~~~~~~~ 59 (148)
-|-||+||||+.+.|
T Consensus 81 vrFGekYKQWNaAfD 95 (144)
T TIGR03646 81 ALFGEKYKQWNAAFD 95 (144)
T ss_pred EEechHHHHHHHHhh
Confidence 367999999999877
No 9
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=42.17 E-value=7.2 Score=27.32 Aligned_cols=25 Identities=44% Similarity=0.751 Sum_probs=16.2
Q ss_pred CCCcCcchhhhccchhhhhhcCCCceeEe
Q psy8093 1 MKRRNEPIWRTVKNPLKQWREDPLSFRLL 29 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (148)
|+|.--..|++-.+|+++ |+|||+.
T Consensus 43 m~r~wGa~W~~~~~~~~~----pls~Rvt 67 (82)
T PF01357_consen 43 MKRSWGAVWQIDSNPPGG----PLSFRVT 67 (82)
T ss_dssp -EEECTTEEEEE-SS--S----SEEEEEE
T ss_pred eecCcCceEEECCCCcCC----CEEEEEE
Confidence 454446688887789887 9999994
No 10
>PLN00115 pollen allergen group 3; Provisional
Probab=29.77 E-value=25 Score=26.86 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCcCcchhhhcc-chhhhhhcCCCceeEee
Q psy8093 1 MKRRNEPIWRTVK-NPLKQWREDPLSFRLLH 30 (148)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 30 (148)
|||.--.+|+.-. .||+- |||||+.-
T Consensus 64 M~rswGavW~~~s~~pl~G----PlS~R~t~ 90 (118)
T PLN00115 64 LKESSTNTWTLKSKAPLKG----PFSVRFLV 90 (118)
T ss_pred cccCccceeEecCCCCCCC----ceEEEEEE
Confidence 5665677888643 37763 99999953
No 11
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.79 E-value=1.6e+02 Score=24.53 Aligned_cols=54 Identities=6% Similarity=-0.068 Sum_probs=37.9
Q ss_pred cCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHHHH
Q psy8093 80 MDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYVQW 136 (148)
Q Consensus 80 m~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e~~ 136 (148)
.+||..++..+++.++.| ++--+-+-..||+- ++.++-|+++++.+++-+--++
T Consensus 55 ~Gsw~fil~~~~~ll~Wi--~lNl~~~~~~~wDp-yPFi~LnLllS~~AaiqAp~Il 108 (191)
T COG4420 55 GGSWAFILTFTLLLLLWI--VLNLFLVPGLAWDP-YPFILLNLLLSTLAAIQAPLIL 108 (191)
T ss_pred cCChHHHHHHHHHHHHHH--HHHHhhhcCCcCCC-ccHHHHHHHHHHHHHHHHhHHH
Confidence 478888888888777776 34445555577774 5567779999998888654433
No 12
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=26.61 E-value=99 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhhccchhcccCCCC
Q psy8093 87 LVTLASYIFFVNYLGPKLMENRKPF 111 (148)
Q Consensus 87 i~I~v~YL~~V~~~Gpk~MKnRkPf 111 (148)
+..+++-+-|+ ..|..+|+||+.-
T Consensus 42 Ls~vvlvi~~~-LLgrsi~ANRnrK 65 (125)
T PF15048_consen 42 LSFVVLVISFF-LLGRSIQANRNRK 65 (125)
T ss_pred HHHHHHHHHHH-HHHHHhHhccccc
Confidence 34444444455 6899999998653
No 13
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.74 E-value=38 Score=27.12 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=9.9
Q ss_pred ccccccCCCCCCC
Q psy8093 34 SYQHGFGSSSSGL 46 (148)
Q Consensus 34 ~~~~~~~~~~~~~ 46 (148)
-|=|||.||....
T Consensus 3 lYlHGF~Ssp~S~ 15 (187)
T PF05728_consen 3 LYLHGFNSSPQSF 15 (187)
T ss_pred EEecCCCCCCCCH
Confidence 4889999987543
No 14
>PRK04940 hypothetical protein; Provisional
Probab=22.31 E-value=41 Score=27.30 Aligned_cols=12 Identities=58% Similarity=1.027 Sum_probs=9.6
Q ss_pred ccccccCCCCCC
Q psy8093 34 SYQHGFGSSSSG 45 (148)
Q Consensus 34 ~~~~~~~~~~~~ 45 (148)
-|=|||.||+..
T Consensus 3 lYlHGF~SS~~S 14 (180)
T PRK04940 3 IYLHGFDSTSPG 14 (180)
T ss_pred EEeCCCCCCCCc
Confidence 478999998755
No 15
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=21.55 E-value=37 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=19.2
Q ss_pred CCchhHHHHHHHHhhhhhhccch----hcccCCC
Q psy8093 81 DTPVPMLVTLASYIFFVNYLGPK----LMENRKP 110 (148)
Q Consensus 81 ~Sp~~~i~I~v~YL~~V~~~Gpk----~MKnRkP 110 (148)
+..|..+.++++|+++.++.+|+ +|..|+-
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677777778887777554543 4666643
No 16
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.33 E-value=73 Score=25.73 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCCCCcc--ccccCcCCchhHHHHHHHHhhhhhhccchhcccCCCCCcchhHHHHhHHHHHHHHHHHHH
Q psy8093 57 LVDILKFIGPELGCDPRM--KEYFLMDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVYV 134 (148)
Q Consensus 57 ~~~~~~~i~~e~~~Dprt--~~WpLm~Sp~~~i~I~v~YL~~V~~~Gpk~MKnRkPf~Lk~lLilYNl~qvlfS~ym~~e 134 (148)
+.+-.+.+|-++.+|-+. ..=++-++|...+++.++|+..+.. |= ..||==-.-+...-++.+++++.++..
T Consensus 8 L~~~id~iN~~E~RDnkprFs~~Fi~~HP~L~~~M~~~y~~~~~l-----m~-~spy~G~~s~~~ftv~fv~m~~~llfD 81 (155)
T PF10777_consen 8 LIEEIDRINREEKRDNKPRFSSSFIRNHPYLCLAMYAAYLAVAAL-----MY-YSPYFGLGSVWGFTVFFVVMAAFLLFD 81 (155)
T ss_pred HHHHHHHHHHHhccCCCccccHHHHHhCcHHHHHHHHHHHHHHHH-----HH-hcchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 345577888777788554 4445678899999999999866521 11 111110122334445556666666554
No 17
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=21.10 E-value=32 Score=26.58 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=4.1
Q ss_pred CCCcCcchh
Q psy8093 1 MKRRNEPIW 9 (148)
Q Consensus 1 ~~~~~~~~~ 9 (148)
+||.|||||
T Consensus 5 ~kRS~EPi~ 13 (118)
T PF02313_consen 5 PKRSDEPIF 13 (118)
T ss_dssp --B-SHHHH
T ss_pred CcccCCCce
Confidence 366777765
No 18
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=20.03 E-value=3.4e+02 Score=20.94 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhhhccchhcccCCCCC---cchhHHHHhHHHHHHHHHHHHHHHHHHHhC
Q psy8093 85 PMLVTLASYIFFVNYLGPKLMENRKPFN---LSTIIKIYNVAQMTCNFYLVYVQWNNCYIR 142 (148)
Q Consensus 85 ~~i~I~v~YL~~V~~~Gpk~MKnRkPf~---Lk~lLilYNl~qvlfS~ym~~e~~~~~~~~ 142 (148)
.....+++|+++| .|--+...+|+.+ ++..+ -+-.+.-+-.|..|++...+...
T Consensus 44 ~~~pA~~fYl~yv--~gi~~F~~~P~l~~~s~~~a~--~~GallGl~~YgtYdlTN~Atlk 100 (128)
T PF09945_consen 44 NLWPAIVFYLIYV--AGIVYFAVRPALAAGSWLRAL--LYGALLGLFAYGTYDLTNLATLK 100 (128)
T ss_pred CcHHHHHHHHHHH--HHHheeeeccccccCCHHHHH--HHHHHHHHHHHHHHHHHhHHHHC
Confidence 3344567787776 5777777777654 33333 44455555567788877666543
Done!