Query psy8093
Match_columns 148
No_of_seqs 131 out of 753
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:17:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jnz_A PHL P 3 allergen; timot 24.3 14 0.00047 26.7 -0.4 25 1-30 57-82 (108)
2 4fle_A Esterase; structural ge 17.9 39 0.0013 23.6 0.9 11 34-44 6-16 (202)
3 1bmw_A PHL P II, pollen allerg 15.6 44 0.0015 23.3 0.7 27 1-31 44-71 (96)
4 1kf6_D Fumarate reductase 13 k 14.9 41 0.0014 25.0 0.4 9 1-9 6-14 (119)
5 2kuy_A Prebacteriocin glycocin 14.0 30 0.001 21.1 -0.4 12 30-41 20-31 (43)
6 3ft1_A PHL P 3 allergen; beta- 13.6 33 0.0011 24.2 -0.4 25 1-30 46-71 (100)
7 2hn8_A Protein PB1-F2; Pro-apo 12.3 51 0.0018 19.9 0.2 8 8-15 11-18 (38)
8 3u2s_G Envelope glycoprotein G 10.9 84 0.0029 23.4 1.0 11 25-35 68-78 (124)
9 4fbl_A LIPS lipolytic enzyme; 8.2 2.2E+02 0.0074 21.1 2.5 11 33-43 54-64 (281)
10 2yrk_A Zinc finger homeobox pr 7.8 88 0.003 20.3 0.1 12 27-38 15-26 (55)
No 1
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=24.33 E-value=14 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.789 Sum_probs=17.6
Q ss_pred CCCcCcchhhhcc-chhhhhhcCCCceeEee
Q psy8093 1 MKRRNEPIWRTVK-NPLKQWREDPLSFRLLH 30 (148)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 30 (148)
|+|- -.+|++-. +||+- |||||+.=
T Consensus 57 M~rn-Ga~W~~~s~~~L~G----plSfRvtt 82 (108)
T 2jnz_A 57 LTKK-GNVWEVKSSKPLVG----PFNFRFMS 82 (108)
T ss_dssp CEEE-TTEEEEECSSCCCS----SEEEEEEE
T ss_pred cccc-CCEeEeCCCCCCCC----CEEEEEEE
Confidence 5555 77888654 36664 99999874
No 2
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=17.92 E-value=39 Score=23.65 Aligned_cols=11 Identities=64% Similarity=0.933 Sum_probs=8.2
Q ss_pred ccccccCCCCC
Q psy8093 34 SYQHGFGSSSS 44 (148)
Q Consensus 34 ~~~~~~~~~~~ 44 (148)
-|=|||+||..
T Consensus 6 l~lHGf~ss~~ 16 (202)
T 4fle_A 6 LYIHGFNSSPS 16 (202)
T ss_dssp EEECCTTCCTT
T ss_pred EEeCCCCCCCC
Confidence 46799998754
No 3
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=15.65 E-value=44 Score=23.31 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=18.2
Q ss_pred CCCcCcchhhhccc-hhhhhhcCCCceeEeee
Q psy8093 1 MKRRNEPIWRTVKN-PLKQWREDPLSFRLLHC 31 (148)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 31 (148)
|+|.--.+|+.-.. ||+- |||||+.--
T Consensus 44 M~r~wGa~W~~~~~~~L~G----plSfRvt~~ 71 (96)
T 1bmw_A 44 MTKGEGGVWTFDSEEPLQG----PFNFRFLTE 71 (96)
T ss_dssp CBCCSSSSBBCBCCSSCCC----CCCBCCEET
T ss_pred CccCcCceeEeCCCCCCCC----CEEEEEEEc
Confidence 56655678886543 4543 999998753
No 4
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=14.94 E-value=41 Score=25.00 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=6.0
Q ss_pred CCCcCcchh
Q psy8093 1 MKRRNEPIW 9 (148)
Q Consensus 1 ~~~~~~~~~ 9 (148)
+||.|||+|
T Consensus 6 pkRS~EPi~ 14 (119)
T 1kf6_D 6 PKRSDEPVF 14 (119)
T ss_dssp CCCCSHHHH
T ss_pred cCcCCCCch
Confidence 367777775
No 5
>2kuy_A Prebacteriocin glycocin F; glycosylation, S-linked, antimic protein; HET: NAG; NMR {Lactobacillus plantarum}
Probab=13.99 E-value=30 Score=21.15 Aligned_cols=12 Identities=50% Similarity=1.032 Sum_probs=9.8
Q ss_pred eeccccccccCC
Q psy8093 30 HCDVSYQHGFGS 41 (148)
Q Consensus 30 ~~~~~~~~~~~~ 41 (148)
-||.-|.|-||-
T Consensus 20 tcdymyshcfgi 31 (43)
T 2kuy_A 20 TCDYMYSHCFGI 31 (43)
T ss_dssp HHHHHHHHHHCC
T ss_pred chhhhhhhccce
Confidence 489999998874
No 6
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=13.58 E-value=33 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.764 Sum_probs=16.3
Q ss_pred CCCcCcchhhhcc-chhhhhhcCCCceeEee
Q psy8093 1 MKRRNEPIWRTVK-NPLKQWREDPLSFRLLH 30 (148)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 30 (148)
|+| --.+|+.-. +||+. |||||+.-
T Consensus 46 M~r-wGa~W~~~s~~~l~G----plSfRvt~ 71 (100)
T 3ft1_A 46 LTK-KGNVWEVKSSKPLVG----PFNFRFMS 71 (100)
T ss_dssp CEE-ETTEEEEECSSCCCS----SEEEEEEE
T ss_pred ecc-cCCEeEeCCCCCCCC----CEEEEEEE
Confidence 455 456777543 26763 99999964
No 7
>2hn8_A Protein PB1-F2; Pro-apoptotic mitochondrial targeting protein, viral protein; NMR {Synthetic}
Probab=12.27 E-value=51 Score=19.89 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=5.9
Q ss_pred hhhhccch
Q psy8093 8 IWRTVKNP 15 (148)
Q Consensus 8 ~~~~~~~~ 15 (148)
-|...|||
T Consensus 11 qWlslknp 18 (38)
T 2hn8_A 11 QWLSLRNP 18 (38)
T ss_dssp HHHTTHHH
T ss_pred HHhhccCc
Confidence 37778888
No 8
>3u2s_G Envelope glycoprotein GP120; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Human immunodeficiency virus 1} PDB: 3u4e_G*
Probab=10.87 E-value=84 Score=23.40 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.0
Q ss_pred ceeEeeecccc
Q psy8093 25 SFRLLHCDVSY 35 (148)
Q Consensus 25 ~~~~~~~~~~~ 35 (148)
++||+||..|.
T Consensus 68 sYrLInCNTSV 78 (124)
T 3u2s_G 68 LYRLISCQTTT 78 (124)
T ss_dssp -EEEEEEEEEE
T ss_pred cEEEEeccCch
Confidence 69999999875
No 9
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=8.25 E-value=2.2e+02 Score=21.14 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=7.8
Q ss_pred cccccccCCCC
Q psy8093 33 VSYQHGFGSSS 43 (148)
Q Consensus 33 ~~~~~~~~~~~ 43 (148)
|-.-|||++|+
T Consensus 54 VlllHG~~~s~ 64 (281)
T 4fbl_A 54 VLVSHGFTGSP 64 (281)
T ss_dssp EEEECCTTCCG
T ss_pred EEEECCCCCCH
Confidence 45569998765
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=7.83 E-value=88 Score=20.30 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.6
Q ss_pred eEeeeccccccc
Q psy8093 27 RLLHCDVSYQHG 38 (148)
Q Consensus 27 ~~~~~~~~~~~~ 38 (148)
+--.|||.|.|-
T Consensus 15 eC~lC~vkYs~r 26 (55)
T 2yrk_A 15 ECTLCGVKYSAR 26 (55)
T ss_dssp CCTTTTCCCCSS
T ss_pred cccccCcccccc
Confidence 566799999874
Done!