Query psy8093
Match_columns 148
No_of_seqs 131 out of 753
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 18:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imra1 b.92.1.11 (A:34-90,A:3 41.3 3.5 0.00025 26.8 0.6 17 26-43 3-19 (77)
2 d1n10a1 b.7.3.1 (A:1146-1240) 25.1 9.3 0.00067 24.9 0.6 25 1-29 45-70 (95)
3 d1miwa1 a.173.1.1 (A:140-404) 24.7 7.8 0.00057 27.3 0.2 56 9-65 2-80 (265)
4 d1ou5a1 a.173.1.1 (A:151-354) 16.1 18 0.0013 25.8 0.5 16 10-25 3-18 (204)
5 d1h72c1 d.14.1.5 (C:5-167) Hom 12.8 22 0.0016 24.3 0.2 24 22-45 73-97 (163)
6 d1kf6d_ f.21.2.2 (D:) Fumarate 12.0 25 0.0018 24.4 0.2 8 2-9 7-14 (119)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 11.4 1.3E+02 0.0095 16.5 4.4 24 107-130 6-29 (37)
8 d2g7oa1 a.241.1.1 (A:60-127) T 10.2 32 0.0023 21.5 0.3 23 37-59 26-48 (68)
9 d1tqha_ c.69.1.29 (A:) Carboxy 9.5 43 0.0031 20.8 0.8 22 33-62 14-35 (242)
10 d1whoa_ b.7.3.1 (A:) PHL P 2 { 7.7 41 0.003 21.4 -0.0 26 1-30 44-70 (94)
No 1
>d2imra1 b.92.1.11 (A:34-90,A:399-418) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}
Probab=41.30 E-value=3.5 Score=26.85 Aligned_cols=17 Identities=53% Similarity=0.987 Sum_probs=10.9
Q ss_pred eeEeeeccccccccCCCC
Q psy8093 26 FRLLHCDVSYQHGFGSSS 43 (148)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (148)
-|||-|||-|. |.|+.-
T Consensus 3 p~ll~cdvl~t-g~gg~~ 19 (77)
T d2imra1 3 PRLLTCDVLYT-GMGGAQ 19 (77)
T ss_dssp EEEEEESEEEC-C---EE
T ss_pred CceEEeeEEEe-cccCcc
Confidence 38999999996 555543
No 2
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=25.12 E-value=9.3 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=17.5
Q ss_pred CCCcCcchhhhc-cchhhhhhcCCCceeEe
Q psy8093 1 MKRRNEPIWRTV-KNPLKQWREDPLSFRLL 29 (148)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 29 (148)
|+|.--.+|+.- ..|++. |||||+.
T Consensus 45 m~r~~ga~W~~~~~~~~~g----pls~Rvt 70 (95)
T d1n10a1 45 LKESWGAIWRIDTPDKLTG----PFTVRYT 70 (95)
T ss_dssp CBCCTTTCEEEECSSCCCS----CEEEEEE
T ss_pred EEECCCCeEEECCCCCCCc----CEEEEEE
Confidence 677778888653 334554 9999986
No 3
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.73 E-value=7.8 Score=27.33 Aligned_cols=56 Identities=25% Similarity=0.186 Sum_probs=33.5
Q ss_pred hhhccchhhhhhcCCC------------ceeEeeecc-----ccccccCCCCCCCCccc------cccHHHHHHHHHhhc
Q psy8093 9 WRTVKNPLKQWREDPL------------SFRLLHCDV-----SYQHGFGSSSSGLRGDQ------KGNRQYLVDILKFIG 65 (148)
Q Consensus 9 ~~~~~~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~ 65 (148)
=|||.||-+..+|||| .|. ++.+. ...++...-|..|-+++ .+++....+.+...|
T Consensus 2 iR~vg~p~~rf~EDpLRiLRa~RFa~rl~f~-i~~~t~~ai~~~~~~l~~vS~ERI~~El~kil~~~~~~~~l~~l~~~g 80 (265)
T d1miwa1 2 IRTVGEAEKRFREDALRMMRAVRFVSELGFA-LAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETG 80 (265)
T ss_dssp ECBSSCHHHHHHHCTHHHHHHHHHHHHHCCE-ECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHST
T ss_pred eeeCCCHHHhccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHCC
Confidence 4899999999999995 343 22221 11234555555555554 345666666666554
No 4
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=16.11 E-value=18 Score=25.79 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=14.5
Q ss_pred hhccchhhhhhcCCCc
Q psy8093 10 RTVKNPLKQWREDPLS 25 (148)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (148)
|+|.||-+.-.||||-
T Consensus 3 r~VGdp~~Rf~ED~LR 18 (204)
T d1ou5a1 3 RFVGHAKQRIQEDYLR 18 (204)
T ss_dssp CBSSTTTTTSSSCTTH
T ss_pred eEeCCHHHhhcchHHH
Confidence 7899999999999983
No 5
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.83 E-value=22 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred CCCceeE-eeeccccccccCCCCCC
Q psy8093 22 DPLSFRL-LHCDVSYQHGFGSSSSG 45 (148)
Q Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~~~~ 45 (148)
.+..|++ ++-|+-..-|.||||+-
T Consensus 73 ~~~~~~i~i~~~IP~gaGLGsSSA~ 97 (163)
T d1h72c1 73 IGKGVKITIKKGVKAGSGLGSSAAS 97 (163)
T ss_dssp CCCEEEEEEECSSCTTSSSCHHHHH
T ss_pred CCCCEEEEEeeccccccccCccHHH
Confidence 3557887 78899999999999984
No 6
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=11.96 E-value=25 Score=24.40 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=4.9
Q ss_pred CCcCcchh
Q psy8093 2 KRRNEPIW 9 (148)
Q Consensus 2 ~~~~~~~~ 9 (148)
||.+||+|
T Consensus 7 KRS~EPi~ 14 (119)
T d1kf6d_ 7 KRSDEPVF 14 (119)
T ss_dssp CCCSHHHH
T ss_pred CCCCCCch
Confidence 56666665
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.38 E-value=1.3e+02 Score=16.49 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.4
Q ss_pred cCCCCCcchhHHHHhHHHHHHHHH
Q psy8093 107 NRKPFNLSTIIKIYNVAQMTCNFY 130 (148)
Q Consensus 107 nRkPf~Lk~lLilYNl~qvlfS~y 130 (148)
|+.|.+|.+.-..|-++++..-+.
T Consensus 6 n~q~veLNrtsLy~GlLlifvl~v 29 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILVLAL 29 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHHH
Confidence 678999999999998877654433
No 8
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=10.16 E-value=32 Score=21.50 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred cccCCCCCCCCccccccHHHHHH
Q psy8093 37 HGFGSSSSGLRGDQKGNRQYLVD 59 (148)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (148)
-|.+|-|.|..|+++=+|+-.++
T Consensus 26 LGI~~lSPHvsgnpkfe~~~mv~ 48 (68)
T d2g7oa1 26 LGIESLSPHVSGNSKFEYANMVE 48 (68)
T ss_dssp HHHHHTCGGGTTCGGGCHHHHHH
T ss_pred hcccccCcccCCCcchhHHHHHH
Confidence 37889999999999999987654
No 9
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.53 E-value=43 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=12.7
Q ss_pred cccccccCCCCCCCCccccccHHHHHHHHH
Q psy8093 33 VSYQHGFGSSSSGLRGDQKGNRQYLVDILK 62 (148)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (148)
|-.=||+|+|+ .+|..+.+.+.
T Consensus 14 vvliHG~~~~~--------~~~~~l~~~L~ 35 (242)
T d1tqha_ 14 VLLLHGFTGNS--------ADVRMLGRFLE 35 (242)
T ss_dssp EEEECCTTCCT--------HHHHHHHHHHH
T ss_pred EEEECCCCCCH--------HHHHHHHHHHH
Confidence 34568998764 23555555544
No 10
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=7.69 E-value=41 Score=21.37 Aligned_cols=26 Identities=31% Similarity=0.752 Sum_probs=15.5
Q ss_pred CCCcCcchhhhcc-chhhhhhcCCCceeEee
Q psy8093 1 MKRRNEPIWRTVK-NPLKQWREDPLSFRLLH 30 (148)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 30 (148)
|+|.--..|+.-. .|++ .|||||+.-
T Consensus 44 M~r~wGa~W~~~~~~~~~----gplsfRvt~ 70 (94)
T d1whoa_ 44 MTKGEGGVWTFDSEEPLQ----GPFNFRFLT 70 (94)
T ss_dssp CEECSTTEEEEECSSCCC----SSEEEEEEE
T ss_pred CccCcCccEEECCCCCCC----ccEEEEEEE
Confidence 4555556675422 2443 399999873
Done!