RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8093
(148 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 61.5 bits (150), Expect = 3e-12
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 78 FLMDTPVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNFYLVY 133
L+ +P P+++ + Y+ FV +LGPK+M NRKPF+L ++ ++N+ + + Y Y
Sbjct: 1 PLLSSPWPVILIIVLYLVFV-FLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFY 55
>gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter,
permease protein. [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 546
Score = 27.7 bits (62), Expect = 2.3
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 19/62 (30%)
Query: 77 YFLMDTP--VPMLVTLASYIFFVNYLGPKLMENRKPFN----------LSTIIKIYNVAQ 124
FL P VP LV YIFF N P N L T++ Y V+
Sbjct: 373 RFLAILPMAVPGLVLGLGYIFFFNAPT-------NPLNGLYGTMALLVLCTVVHFYTVSH 425
Query: 125 MT 126
+T
Sbjct: 426 LT 427
>gnl|CDD|221442 pfam12146, Hydrolase_4, Putative lysophospholipase. This domain
is found in bacteria and eukaryotes and is
approximately 110 amino acids in length. It is found in
association with pfam00561. Many members are annotated
as being lysophospholipases, and others as alpha-beta
hydrolase fold-containing proteins.
Length = 80
Score = 26.4 bits (59), Expect = 2.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 36 QHGFGSSSSGLRGDQKGNRQYLVDILKFI 64
G G S G RG Y+ D+ F+
Sbjct: 52 HRGHGRSP-GKRGHVPSFDDYVDDLDTFV 79
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 27.4 bits (61), Expect = 3.1
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 3 RRNEPIWRTVKNPLKQWREDPLSFRLLHCDVSYQHGFGSSSSGLRGDQKGNRQYLVDILK 62
RRN + + N + + PL + + DV + G L I
Sbjct: 174 RRNLGLELGLPNIRRLFASGPL-LEIAYTDVLFPPGDR----------------LPFIGP 216
Query: 63 FIGPELGCDPRMKEYFLMDTPVPMLVTLAS 92
+IGP LG Y++ + V+L +
Sbjct: 217 YIGPLLGEAANELPYWIPADRPIVYVSLGT 246
>gnl|CDD|237175 PRK12697, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 226
Score = 27.1 bits (60), Expect = 3.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 83 PVPMLVTLASYIFFVNYLGPKLMENRKPFNLSTIIKI 119
P+P + I+ Y G L E+++P N+ I+ I
Sbjct: 41 PMPPSMQAPGSIYNPGYAGRPLFEDQRPRNVGDILTI 77
>gnl|CDD|224535 COG1620, LldP, L-lactate permease [Energy production and
conversion].
Length = 522
Score = 26.8 bits (60), Expect = 4.5
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 18/51 (35%)
Query: 55 QYLVDILKFIGPELGCDPRMKEYFLMDTP--VPMLVTLASYIFFVNYLGPK 103
Q+L+ F+GPEL P + LV+L F+ PK
Sbjct: 225 QFLLAN--FLGPEL--------------PDIIGGLVSLGILALFLKKWQPK 259
>gnl|CDD|227104 COG4763, COG4763, Predicted membrane protein [Function unknown].
Length = 388
Score = 26.8 bits (59), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 129 FYLV-YVQWNNCYIRRLW 145
LV YV W NC +RLW
Sbjct: 94 IDLVPYVLWGNCLDKRLW 111
>gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved
in pyridoxine biosynthesis. Glutamine Amidotransferase
(GATase_I) involved in pyridoxine biosynthesis.
Glutamine amidotransferase (GATase) activity involves
the removal of the ammonia group from a glutamate
molecule and its subsequent transfer to a specific
substrate, thus creating a new carbon-nitrogen group on
the substrate. This group contains proteins like
Bacillus subtilus YaaE and Plasmodium falciparum Pdx2
which are members of the triad glutamine
aminotransferase family and function in a pathway for
the biosynthesis of vitamin B6.
Length = 183
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 66 PELGCDPRMKEYFL 79
PEL D R+ EYFL
Sbjct: 170 PELTDDTRIHEYFL 183
>gnl|CDD|235652 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit;
Reviewed.
Length = 232
Score = 25.9 bits (58), Expect = 7.9
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 66 PELGCDPRMKEYFL-MDTPVPMLVTLASYI 94
P++ +PRM+ Y + +D PM++ I
Sbjct: 9 PDVDANPRMQTYEVDVDECGPMVLDALIKI 38
>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 200
Score = 26.0 bits (58), Expect = 8.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 66 PELGCDPRMKEYFL 79
PEL D R+ EYFL
Sbjct: 181 PELTDDTRIHEYFL 194
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.462
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,625,579
Number of extensions: 664672
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 19
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)