RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8093
         (148 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 34/101 (33%)

Query: 23  PLSFRLLHCDVSYQHGFGSSSSGLRGDQKGNRQYLVDILKFI-GPELGCDPRMKEYFLMD 81
            L    L  +  +  G                    +IL+++  P         + +L+ 
Sbjct: 197 ELIRTTLDAEKVFTQGL-------------------NILEWLENP----SNTPDKDYLLS 233

Query: 82  TPV--PM--LVTLASYIFFVNYLGPKLMENRKPFNLSTIIK 118
            P+  P+  ++ LA Y+     LG        P  L + +K
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLG------FTPGELRSYLK 268



 Score = 36.6 bits (84), Expect = 0.002
 Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 71/174 (40%)

Query: 16  LKQWRED-------------PLSF------RLLH----CDVS-YQHG-FGSSSSGLRGDQ 50
           + +W E+             P+S       +L H      +  +  G   S   G  G  
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274

Query: 51  KG------------------NRQYLVDILKFIG-------PELGCDPRMKEYFL---MDT 82
           +G                  + +  + +L FIG       P     P + E  L      
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334

Query: 83  PVPMLV-------TLASYIFFVNYLGPKLMENRKPFNLSTIIKIYNVAQMTCNF 129
           P PML         +  Y+   N   P     ++   +   I + N A+   N 
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLP---AGKQ---VE--ISLVNGAK---NL 377


>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
           fold, chroloplast, TRAN isoprenoid biosynthetic process;
           2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
          Length = 348

 Score = 29.6 bits (67), Expect = 0.37
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 55  QYLVDILKFIGPEL-GCDPRMKEYFLMDTPVPMLVTLASYIFFVNYLGPKL 104
           +  +D    +  EL     +++E  ++   VP L + A Y F     G + 
Sbjct: 5   EEELDPFSLVADELSLLSNKLRE--MVLAEVPKLASAAEYFFKRGVQGKQF 53


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
          cytoplasmic vesicle, membrane, Ca structural protein;
          7.94A {Bos taurus}
          Length = 190

 Score = 27.0 bits (59), Expect = 2.1
 Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 6/21 (28%)

Query: 2  KRRNEPIWRTVKNPLKQWRED 22
          +   EP        +++WRE+
Sbjct: 79 RLTQEP------ESIRKWREE 93


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,338,101
Number of extensions: 121811
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 9
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)