BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8096
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIM 73
VIR+ +DKREK Y KGIGCYMF+IDD V+DATM GNAARFINHSC+PNCYSRV+ I
Sbjct: 85 VIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINID 144
Query: 74 GKPHIIIFALRKINKGEELTYDYKFPIED-DNKISCHCLAMRC 115
G+ HI+IFA+RKI +GEELTYDYKFPIED NK+ C+C A +C
Sbjct: 145 GQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKC 187
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 35 YMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTY 94
YM +D +IDA KGN ARF+NH C PNC ++ + G + +FAL I G ELT+
Sbjct: 147 YMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTF 206
Query: 95 DYKFPIEDDNKISCHCLAMRCT 116
+Y + K C C A C+
Sbjct: 207 NYNLECLGNGKTVCKCGAPNCS 228
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 23 REKQYM-DKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIF 81
R K+Y +K I Y + + +IDAT KGN +RF+NHSC+PNC ++ + G+ + F
Sbjct: 159 RVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFF 218
Query: 82 ALRKINKGEELTYDYKFPIEDDNKISCHCLAMRC 115
+ + G ELT+DY+F C C + C
Sbjct: 219 TTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANC 252
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKID---DRFVIDATMKGNAARFINHSCDPNCYSRVV 70
VI + +++R + Y +KGI Y+F +D D F +DA GN + F+NHSCDPN V
Sbjct: 174 VITSEEAERRGQFYDNKGI-TYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNV 232
Query: 71 EI----MGKPHIIIFALRKINKGEELTYDYKF--------------PIEDDNKISCHCLA 112
I P I +F+ R IN GEELT+DY+ P + + C C A
Sbjct: 233 FIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGA 292
Query: 113 MRC 115
+ C
Sbjct: 293 VTC 295
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 35 YMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTY 94
Y +D VID+ GN ARFINHSCDPNC + + G I ++AL+ + G ELTY
Sbjct: 128 YCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTY 187
Query: 95 DYKF 98
DY F
Sbjct: 188 DYNF 191
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 14 VIRASVSDKREKQY-MDKGIGCYMFK---IDDRFVIDATMKGN-AARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 62 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKSGNCQTK 121
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDY 96
+ +I G PH+I+ A R I GEEL YDY
Sbjct: 122 LHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 14 VIRASVSDKREKQY-MDKGIGCYMFK---IDDRFVIDATMKGN-AARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 64 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTK 123
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDY 96
+ +I G PH+I+ A R I GEEL YDY
Sbjct: 124 LHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 14 VIRASVSDKREKQY-MDKGIGCYMFK---IDDRFVIDATMKGN-AARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 58 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTK 117
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDY 96
+ +I G PH+I+ A R I GEEL YDY
Sbjct: 118 LHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 14 VIRASVSDKREKQY-MDKGIGCYMFK---IDDRFVIDATMKGN-AARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 63 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTK 122
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDY 96
+ +I G PH+I+ A R I GEEL YDY
Sbjct: 123 LHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 14 VIRASVSDKREKQY-MDKGIGCYMFK---IDDRFVIDATMKGN-AARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 63 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTK 122
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDY 96
+ +I G PH+I+ A R I GEEL +DY
Sbjct: 123 LHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH CDPN V ++ + P I F+ R I
Sbjct: 173 YLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDI 232
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GEEL +DY +F +C C + +C ++
Sbjct: 233 RTGEELGFDYGDRFWDIKSKYFTCQCGSEKCKHS 266
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH CDPN V ++ + P I F+ R I
Sbjct: 175 YLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDI 234
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GEEL +DY +F +C C + +C ++
Sbjct: 235 RTGEELGFDYGDRFWDIKSKYFTCQCGSEKCKHS 268
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 7 VSVTLMAVIRASVSDKREKQYMDKGIGCYMFKID-----DRFVIDATMKGNAARFINHSC 61
++ L VI ++ + KR+K Y D GI Y+F +D + +DA G+ +RF NHSC
Sbjct: 163 ITCYLGEVITSAEAAKRDKNYDDDGI-TYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSC 221
Query: 62 DPN--CYSRVVEIMGKP--HIIIFALRKINKGEELTYDY 96
PN YS V + + FA++ I EELT+DY
Sbjct: 222 SPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY 260
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH C+PN V + + P I F+ R I
Sbjct: 194 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 253
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GE+L +DY +F SC C + +C ++
Sbjct: 254 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 287
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH C+PN V + + P I F+ R I
Sbjct: 192 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 251
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GE+L +DY +F SC C + +C ++
Sbjct: 252 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 285
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH C+PN V + + P I F+ R I
Sbjct: 168 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 227
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GE+L +DY +F SC C + +C ++
Sbjct: 228 EAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 261
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 35 YMFKIDDR----FVIDATMKGNAARFINHSCDPNCYSRVVEIMGK----PHIIIFALRKI 86
Y+F +D++ + IDA GN +RFINH C+PN V + + P I F+ R I
Sbjct: 193 YLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLI 252
Query: 87 NKGEELTYDY--KFPIEDDNKISCHCLAMRCTNN 118
GE+L +D +F SC C + +C ++
Sbjct: 253 EAGEQLGFDAGERFWDIKGKLFSCRCGSPKCRHS 286
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 45 IDATMKGNAARFINHSCDPNCYSRVVEIMGK-PHIIIFALRKINKGEELTYDY 96
+D T GN RF+NHSC+PN V I P + +FA + I EEL+YDY
Sbjct: 197 VDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDY 249
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 45 IDATMKGNAARFINHSCDPN--CYSRVVEIMGKPHI---IIFALRKINKGEELTYDY 96
+D RFINHSCDPN ++RV + K HI +FA++ I KG ELT+DY
Sbjct: 212 VDGEYMSGPTRFINHSCDPNMAIFARVGDHADK-HIHDLALFAIKDIPKGTELTFDY 267
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 239 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 275
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 205 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 241
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 56 FINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC + PH+++ A+R I GEELT Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 47 ATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNKI 106
A + A FINH C PNC + V G+ + ALR I GEE++ Y +N
Sbjct: 199 AQLWLGPAAFINHDCRPNC--KFVST-GRDTACVKALRDIEPGEEISCYYGDGFFGENNE 255
Query: 107 SCHC 110
C C
Sbjct: 256 FCEC 259
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 47 ATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELT--YDYKFPIEDDN 104
A + A FINH C PNC + V G + LR I G+E+T Y F E +
Sbjct: 170 AQLWLGPAAFINHDCKPNC--KFVPADGN-AACVKVLRDIEPGDEVTCFYGEGFFGEKNE 226
Query: 105 KISCH 109
CH
Sbjct: 227 HCECH 231
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 32 IGCYMFKIDDRFVIDATMKGNAARF--INHSCDPNCY-------SRVVEIM--GKPHIII 80
I C F + D+ + A G +NH C PNC V+ M + I +
Sbjct: 177 INCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIEL 236
Query: 81 FALRKINKGEELTYDY 96
AL KI++GEELT Y
Sbjct: 237 RALGKISEGEELTVSY 252
>pdb|3LD1|A Chain A, Crystal Structure Of Ibv Nsp2a
Length = 359
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 34 CYMFKIDDRFVIDATMKGNAARFINHSCD 62
CY+FK DRF A + GN A H C+
Sbjct: 327 CYVFKSGDRFYA-APLSGNFALHDVHCCE 354
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 78 IIIFALRKINKGEELTYDYKFPIEDDNKISC 108
+II A+ K K + +TYD+ +E ++SC
Sbjct: 385 VIISAMEKSIKQKRVTYDFARLMEGATQVSC 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,247,486
Number of Sequences: 62578
Number of extensions: 115375
Number of successful extensions: 342
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 38
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)