RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8096
(118 letters)
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 165 bits (420), Expect = 1e-53
Identities = 73/103 (70%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIM 73
VIR+ +DKREK Y KGIGCYMF+IDD V+DATM GNAARFINHSC+PNCYSRV+ I
Sbjct: 85 VIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINID 144
Query: 74 GKPHIIIFALRKINKGEELTYDYKFPIEDD-NKISCHCLAMRC 115
G+ HI+IFA+RKI +GEELTYDYKFPIED NK+ C+C A +C
Sbjct: 145 GQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKC 187
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 143 bits (363), Expect = 2e-44
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGC-YMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEI 72
+I R + + I YM +D +IDA KGN ARF+NH C PNC ++ +
Sbjct: 125 LIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSV 184
Query: 73 MGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCLAMRC 115
G + +FAL I G ELT++Y + K C C A C
Sbjct: 185 NGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNC 227
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 142 bits (361), Expect = 2e-44
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIM 73
V+ R + Y +D VID+ GN ARFINHSCDPNC + +
Sbjct: 107 VVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVN 166
Query: 74 GKPHIIIFALRKINKGEELTYDYKFPIED-DNKISCHCLAMRC 115
G I ++AL+ + G ELTYDY F + + + C C +C
Sbjct: 167 GVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKC 209
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 144 bits (365), Expect = 2e-44
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGC-YMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEI 72
V+ R K+Y Y + + +IDAT KGN +RF+NHSC+PNC ++ +
Sbjct: 150 VLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTV 209
Query: 73 MGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCLAMRC 115
G+ + F + + G ELT+DY+F C C + C
Sbjct: 210 NGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANC 252
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 133 bits (337), Expect = 2e-41
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 14 VIRASVSDKREKQYM-DKGIGCYMF---KIDDRFVIDATMKGNA-ARFINHSCDPNCYSR 68
+I + + KRE Y D GCYM+ + + +DAT + N R INHS NC ++
Sbjct: 63 LIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTK 122
Query: 69 VVEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCLA 112
+ +I G PH+I+ A R I GEEL +DY + + L
Sbjct: 123 LHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHP-WLK 165
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 110 bits (276), Expect = 6e-31
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKID---DRFVIDATMKGNAARFINHSCDPNCYSRVV 70
VI + +++R + Y +KGI Y+F +D D F +DA GN + F+NHSCDPN V
Sbjct: 174 VITSEEAERRGQFYDNKGI-TYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNV 232
Query: 71 EI----MGKPHIIIFALRKINKGEELTYDYKFPIEDD--------------NKISCHCLA 112
I P I +F+ R IN GEELT+DY+ D + C C A
Sbjct: 233 FIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGA 292
Query: 113 MRC 115
+ C
Sbjct: 293 VTC 295
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 102 bits (257), Expect = 5e-28
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKID-----DRFVIDATMKGNAARFINHSCDPNCYSR 68
VI ++ + KR+K Y D GI Y+F +D + +DA G+ +RF NHSC PN
Sbjct: 170 VITSAEAAKRDKNYDDDGI-TYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIY 228
Query: 69 VVEIMGK----PHIIIFALRKINKGEELTYDYKFPIEDD--------------NKISCHC 110
+ FA++ I EELT+DY + + C C
Sbjct: 229 SAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKC 288
Query: 111 LAMRC 115
+ C
Sbjct: 289 GSANC 293
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 100 bits (251), Expect = 3e-27
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDR--------FVIDATMKGNAARFINHSCDPNC 65
V+ S +R K Y+ I + +D T GN RF+NHSC+PN
Sbjct: 159 VLGFSEVQRRIHLQ-TKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNL 217
Query: 66 YSRVVEIMGK-PHIIIFALRKINKGEELTYDYKFPIEDD-------------NKISCHCL 111
V I P + +FA + I EEL+YDY + + C+C
Sbjct: 218 LMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCG 277
Query: 112 AMRC 115
A C
Sbjct: 278 AKSC 281
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 99.3 bits (247), Expect = 1e-26
Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 14 VIRASVSDKREKQYMDKGIGC-YMFKID--------------DRFVIDATMKGNAARFIN 58
+I + +D+R + Y+F +D +D RFIN
Sbjct: 166 IITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFIN 225
Query: 59 HSCDPNCYSRVVEI----MGKPHIIIFALRKINKGEELTYDYKFPIEDD----------- 103
HSCDPN + +FA++ I KG ELT+DY +
Sbjct: 226 HSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKIS 285
Query: 104 NKISCHCLAMRC 115
C C +C
Sbjct: 286 EMTKCLCGTAKC 297
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 93.1 bits (232), Expect = 4e-26
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 23 REKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFA 82
R + Y+F + + NHS DPN + G + IF
Sbjct: 38 RHNDDWGTALEDYLFSRKNMSAMA----LGFGAIFNHSKDPNARHELTA--GLKRMRIFT 91
Query: 83 LRKINKGEELTYDYKF 98
++ I GEE+T Y
Sbjct: 92 IKPIAIGEEITISYGD 107
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 96.7 bits (240), Expect = 8e-26
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 16 RASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGK 75
A +S+ E + G + R A + A FINH C PNC G+
Sbjct: 169 IAELSEIEENMLLRHGENDFSVMYSTR-KNCAQLWLGPAAFINHDCRPNCKF---VSTGR 224
Query: 76 PHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCLAMRC 115
+ ALR I GEE++ Y +N C C
Sbjct: 225 DTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCER 264
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 95.0 bits (236), Expect = 4e-25
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEI- 72
+I S +D RE+ K + + IDA GN +RFINH C+PN V +
Sbjct: 180 LISDSEADVREEDSYLF---DLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMA 236
Query: 73 ---MGKPHIIIFALRKINKGEELTYDYKFPIED--DNKISCHCLAMRC 115
+ P I F+ R I GE+L +DY D SC C + +C
Sbjct: 237 HQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 284
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 92.5 bits (229), Expect = 2e-24
Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 14/106 (13%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMK--------GNAARFINHSCDPNC 65
I D R+ +D+ VID + NHS PNC
Sbjct: 144 RITHQEVDSRDWALNG-----NTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 198
Query: 66 -YSRVVEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHC 110
Y V P I LR + EELT Y + K
Sbjct: 199 IYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEA 244
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 79.7 bits (196), Expect = 1e-19
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 21 DKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIII 80
+ ++ + G + R A + A FINH C PNC +
Sbjct: 145 READEGLLRAGENDFSIMYSTRK-RSAQLWLGPAAFINHDCKPNCKFVPA---DGNAACV 200
Query: 81 FALRKINKGEELTYDYKFPIEDDNKISCHCLAMRC 115
LR I G+E+T Y + C C
Sbjct: 201 KVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCER 235
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 55.8 bits (134), Expect = 3e-11
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 22 KREKQYMDKGIGCYMFKIDDRFVIDAT---MKGNAARFINHSCDPNCYSRVVEIMGKPHI 78
K+ Q + ++ + ++ KGN R++N +C + + + I
Sbjct: 65 KKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQN-LFPLEINRAI 123
Query: 79 IIFALRKINKGEELTYDY 96
L+ I GEEL Y
Sbjct: 124 YYKTLKPIAPGEELLVWY 141
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 51.2 bits (122), Expect = 2e-09
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 1/104 (0%)
Query: 14 VIRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIM 73
VI D + + + + + +I + + + + +
Sbjct: 62 VIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQN-LEVVQ 120
Query: 74 GKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCLAMRCTN 117
I A+ I +EL Y I
Sbjct: 121 IGTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIPGVPGLEEDQK 164
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 49.3 bits (117), Expect = 1e-08
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 26 QYMDKGIGCYMFKIDDRFVIDAT--MKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFAL 83
+ + + + + N F+ + + + V G H+ +
Sbjct: 67 KVSLDKGDRKERDLHEDLWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYGH-HVYYTTI 125
Query: 84 RKINKGEELTYDY--------KFPIED 102
+ + +EL Y I D
Sbjct: 126 KNVEPKQELKVWYAASYAEFVNQKIHD 152
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 46.8 bits (111), Expect = 7e-08
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 19 VSDKREKQYMDKGIGCYMFKIDDR----FVIDAT--MKGNAARFINHSCDPNCYSRVVEI 72
++ DK + +++KI F I T + N F+ + + + V
Sbjct: 58 SHSMEVAEWTDKAVN-HIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYP 116
Query: 73 MGKPHIIIFALRKINKGEELTYDY 96
I + I EL + Y
Sbjct: 117 HDG-KIFFCTSQDIPPENELLFYY 139
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 45.1 bits (106), Expect = 5e-07
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 20 SDKREKQYMDKGIGCYMFKIDDRFVIDATM---KGNAARFINHSCDPNCYSRVVEIMGKP 76
++ + ++ ++ + K N R++N + P + +
Sbjct: 95 TNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQN-LAACQNGM 153
Query: 77 HIIIFALRKINKGEELTYDY 96
+I + ++ I +EL Y
Sbjct: 154 NIYFYTIKPIPANQELLVWY 173
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 45.3 bits (106), Expect = 7e-07
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 54 ARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSCDPNC PH+++ A+R I GEELT Y
Sbjct: 202 ISLLNHSCDPNCSIVFNG----PHLLLRAVRDIEVGEELTICY 240
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 42.9 bits (100), Expect = 4e-06
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 54 ARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDY 96
+NHSC PN + A+++I+ G+E+ Y
Sbjct: 202 VALMNHSCCPNVIVTYKG----TLAEVRAVQEIHPGDEVFTSY 240
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 40.7 bits (94), Expect = 3e-05
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 21 DKREKQYMDKGIGCYMFKIDDRFVIDATMKGN--AARFINHSCDPNCY---------SRV 69
+ ++ I C F + D+ + A G +NH C PNC +
Sbjct: 166 SMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVK 225
Query: 70 VEIMGKPHIIIFALRKINKGEELTYDY 96
+ I + AL KI++GEELT Y
Sbjct: 226 SMFHTQMRIELRALGKISEGEELTVSY 252
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 39.4 bits (91), Expect = 7e-05
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 29 DKGIGCYMFKIDDR----FVIDAT--MKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFA 82
DK G + + I D+ ID + K N R++ S + + ++ I A
Sbjct: 110 DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQN-LLAFQHSERIYFRA 168
Query: 83 LRKINKGEELTYDY 96
R I GE L Y
Sbjct: 169 CRDIRPGEWLRVWY 182
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 58 NHSCDPNC-YSRVVEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNK 105
NHS PNC Y V P I LR + EELT Y + K
Sbjct: 245 NHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGK 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.42
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 24 EKQYMDK---GIGCYMFKIDDR---FVIDATMK 50
EKQ + K + Y DD I ATM+
Sbjct: 18 EKQALKKLQASLKLYA---DDSAPALAIKATME 47
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 16 RASVSDKREKQYMDKGIGCYMFKIDDRFVID 46
RA+V K Y+ +G G Y++ +D ++D
Sbjct: 32 RAAV--KPYPFYVKRGEGAYLYTVDGARIVD 60
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein;
polyamine binding, SYPH spermidine, lipoprotein,
transport protein; HET: MES; 1.78A {Treponema pallidum}
Length = 343
Score = 26.5 bits (59), Expect = 2.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 41 DRFVI--DATMKGNAARFINHSCDPNCYSRVVEIMG 74
D F I A + A FIN +P Y+ ++ G
Sbjct: 258 DSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFG 293
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter,
binding protein; structural genomics, niaid; HET: EPE;
1.50A {Streptococcus pneumoniae TCH8431}
Length = 330
Score = 26.4 bits (59), Expect = 2.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 41 DRFVI--DATMKGNAARFINHSCDPNCYSRVVEIMG 74
D VI + +A FIN P + E +G
Sbjct: 237 DNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVG 272
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 26.1 bits (58), Expect = 2.8
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 41 DRFVI--DATMKGNAARFINHSCDPNCYSRVVEIMG 74
D F + DA K A +F+N+ P+ + + + +
Sbjct: 252 DVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVF 287
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A
{Pseudomonas aeruginosa} PDB: 3ttk_A
Length = 346
Score = 26.1 bits (58), Expect = 2.9
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 41 DRFVI--DATMKGNAARFINHSCDP 63
D I DA A F+N P
Sbjct: 255 DMVAIPKDAENTEGALAFVNFLMKP 279
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine;
HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Length = 340
Score = 26.1 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 41 DRFVI--DATMKGNAARFINHSCDPNCYSRVVEIMG 74
D I DA NA FI++ P ++V + +G
Sbjct: 251 DLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVG 286
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 41 DRFVI--DATMKGNAARFINHSCDPNCYSRVVEIMG 74
D I +A K A + IN P+ +V E +G
Sbjct: 234 DSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIG 269
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding
protein-DNA complex; 1.70A {Homo sapiens} SCOP:
d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Length = 73
Score = 24.9 bits (55), Expect = 3.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 62 DPNCYSRVVEIMGKPHIIIFALRKINK 88
+ NC R++ + G + I A I
Sbjct: 42 EGNCPERIITLAGPTNAIFKAFAMIID 68
>3ld1_A Replicase polyprotein 1A; globular like, HOST cytoplasm, HOST
membrane, membrane, META binding, protease, RNA-binding;
2.50A {Avian infectious bronchitis virus}
Length = 359
Score = 25.8 bits (56), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 34 CYMFKIDDRFVIDATMKGNAARFINHSCD 62
CY+FK DRF A + GN A H C+
Sbjct: 327 CYVFKSGDRFYA-APLSGNFALHDVHCCE 354
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 25.4 bits (56), Expect = 4.5
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 41 DRFVI--DATMKGNAARFINHSCDP 63
+ I ++ K A FIN++
Sbjct: 265 NTININKNSKNKDLAYEFINYALSK 289
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 25.4 bits (56), Expect = 5.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 41 DRFVI--DATMKGNAARFINHSCDP 63
D F I A NA + ++ DP
Sbjct: 266 DFFSIPKGAPNYDNALKLLSWRLDP 290
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 106
Score = 24.7 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 62 DPNCYSRVVEIMGKPHIIIFALRKIN 87
D ++ IMG P A R IN
Sbjct: 50 DGTGPEKIAHIMGPPDRCEHAARIIN 75
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA
binding protein, KH domain, KSRP, posttranscriptional
regulation, mRNA decay; NMR {Homo sapiens}
Length = 164
Score = 24.7 bits (54), Expect = 6.8
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 54 ARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINK 88
R D ++ IMG P A R IN
Sbjct: 122 VRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 24.9 bits (55), Expect = 7.4
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 11/43 (25%)
Query: 70 VEIMGKPHIIIFALRKI----------NKGEELTYDYKFPIED 102
+ I+G ++II K+ + + E+
Sbjct: 124 LGIIGVKNLIIV-QNKVDVVSKEEALSQYRQIKQFTKGTWAEN 165
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 24.8 bits (55), Expect = 9.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 27 YMDKGIGCYMFKIDDRFVID 46
M++G G Y + +D ID
Sbjct: 40 AMERGKGAYFWDVDGNKYID 59
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 24.9 bits (55), Expect = 9.6
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 27 YMDKGIGCYMFKIDDRFVID 46
+ +G G +D ++
Sbjct: 85 VIAQGTGSRFQDVDGHAYVN 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.425
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,857,544
Number of extensions: 103999
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 65
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)