RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8096
(118 letters)
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 84.4 bits (208), Expect = 2e-22
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 14 VIRASVSDKREKQYMDKGIG---CYMFKIDDRFVIDATMKGNAARFINHSCDPNC-YSRV 69
I D R+ + + + + + + + NHS PNC Y
Sbjct: 56 RITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMF 115
Query: 70 VEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHC 110
V P I LR + EELT Y + K
Sbjct: 116 VHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEA 156
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 83.3 bits (205), Expect = 2e-21
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 14 VIRASVSDKREKQYMDKGI----GCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRV 69
VI ++ + KR+K Y D GI MF + +DA G+ +RF NHSC PN
Sbjct: 169 VITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYS 228
Query: 70 VEIMGK----PHIIIFALRKINKGEELTYDYKFPIEDD 103
+ FA++ I EELT+DY +
Sbjct: 229 AVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFS 266
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 65.7 bits (159), Expect = 1e-14
Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 30/126 (23%)
Query: 15 IRASVSDKREKQYMDKGIGC---------------YMFKIDDRFVIDATMKGNAARFINH 59
I + +D+R + +D RFINH
Sbjct: 159 ITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINH 218
Query: 60 SCDPNCYSRVVEI----MGKPHIIIFALRKINKGEELTYDYKFPIEDD-----------N 104
SCDPN + +FA++ I KG ELT+DY +
Sbjct: 219 SCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISE 278
Query: 105 KISCHC 110
C C
Sbjct: 279 MTKCLC 284
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 56.4 bits (135), Expect = 3e-12
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 24 EKQYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFAL 83
+ Y+F + + M NHS DPN + G + IF +
Sbjct: 39 HNDDWGTALEDYLFSRKN----MSAMALGFGAIFNHSKDPNARHELTA--GLKRMRIFTI 92
Query: 84 RKINKGEELTYDY 96
+ I GEE+T Y
Sbjct: 93 KPIAIGEEITISY 105
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 33.0 bits (74), Expect = 0.005
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 10/78 (12%)
Query: 26 QYMDKGIGCYMFKIDDRFVIDATMKGNAARFINHSCDPNCYSRVVEIMGKPH-------I 78
+ + F + A INHS E+ G
Sbjct: 164 FWAFGILRSRAFSRLRNENLVVVPM---ADLINHSAGVTTEDHAYEVKGAAGLFSWDYLF 220
Query: 79 IIFALRKINKGEELTYDY 96
+ + + GE++ Y
Sbjct: 221 SLKSPLSVKAGEQVYIQY 238
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 26.0 bits (57), Expect = 0.45
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 45 IDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINK 88
I R D R+ +I G P A I
Sbjct: 25 IKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITD 68
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 25.6 bits (56), Expect = 0.63
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 45 IDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKIN 87
I+ + + A+ + R V I G I A IN
Sbjct: 24 INEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLIN 66
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit
(RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 25.9 bits (57), Expect = 0.99
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 35 YMFKIDDR--FVIDATMK--GNAARFINHSCDPNCYSRVV----EIMGKPHIIIFALRKI 86
++KIDD +D + N P Y +V K ++ F + +
Sbjct: 47 IVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPL 106
Query: 87 NKGEELTY 94
E T
Sbjct: 107 EDMNEFTT 114
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 25.2 bits (55), Expect = 2.5
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 71 EIMGKPHIIIFALRKINKGEELT-YDYKFPIEDDNKISC 108
H+ + + E L YD+ + +E D K+ C
Sbjct: 113 GSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYC 151
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 23.7 bits (51), Expect = 3.4
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 45 IDATMKGNAARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINK 88
I + A R++ I G I A +
Sbjct: 26 IKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 69
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 24.2 bits (52), Expect = 4.7
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 59 HSCDPNCYSRVVEIMGKPHIIIFALRKINKGEELTYDYKFPIEDDNKISCHCL 111
+ D + V ++ + R+ + Y P++ +
Sbjct: 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 119
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 24.4 bits (52), Expect = 5.3
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 27 YMDKGIGCYMFKIDDRFVIDATM 49
+ D+ C ++ ++ R +D
Sbjct: 25 FADRAENCRVWDVEGREYLDFAG 47
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 22.8 bits (49), Expect = 5.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 62 DPNCYSRVVEIMGKPHIIIFALRKINK 88
+ NC R++ + G + I A I
Sbjct: 41 EGNCPERIITLAGPTNAIFKAFAMIID 67
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 24.0 bits (51), Expect = 6.4
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 15 IRASVSDKREKQYMDKGIGCYMFKIDDRFVIDATM 49
+RA S + D+ Y + +D ID
Sbjct: 25 VRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 59
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 22.5 bits (48), Expect = 9.3
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 54 ARFINHSCDPNCYSRVVEIMGKPHIIIFALRKINK 88
+ R + G P + A R +++
Sbjct: 39 CKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.425
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,355
Number of extensions: 20840
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 37
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)