Query psy81
Match_columns 120
No_of_seqs 176 out of 1163
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy81.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/81hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03149 alpha_CA_VII Carbonic 100.0 5.1E-37 1.1E-41 232.2 11.8 109 6-119 19-130 (236)
2 cd03118 alpha_CA_V Carbonic an 100.0 8.1E-37 1.8E-41 231.1 12.7 109 6-119 19-130 (236)
3 cd03121 alpha_CARP_X_XI_like C 100.0 3.8E-36 8.2E-41 229.8 12.5 108 6-118 36-145 (256)
4 cd03119 alpha_CA_I_II_III_XIII 100.0 1.1E-35 2.4E-40 227.5 12.4 108 6-119 43-153 (259)
5 cd03120 alpha_CARP_VIII Carbon 100.0 1.6E-35 3.5E-40 226.3 12.7 102 16-119 39-143 (256)
6 cd03117 alpha_CA_IV_XV_like Ca 100.0 4.1E-35 9E-40 221.5 12.5 107 6-117 19-126 (234)
7 cd03122 alpha_CARP_receptor_li 100.0 1.4E-34 3.1E-39 220.8 12.6 107 7-117 34-143 (253)
8 cd03126 alpha_CA_XII_XIV Carbo 100.0 1.5E-34 3.2E-39 220.3 12.1 109 5-119 31-142 (249)
9 cd03150 alpha_CA_IX Carbonic a 100.0 1.2E-34 2.6E-39 220.6 11.3 106 6-117 32-139 (247)
10 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 4.3E-34 9.4E-39 217.6 12.4 109 6-119 32-144 (248)
11 cd03125 alpha_CA_VI Carbonic a 100.0 6E-34 1.3E-38 217.0 12.1 107 5-117 31-140 (249)
12 KOG0382|consensus 100.0 8.9E-34 1.9E-38 217.3 11.0 100 16-117 51-154 (262)
13 PF00194 Carb_anhydrase: Eukar 100.0 1.4E-33 3.1E-38 215.0 10.6 103 16-119 45-150 (256)
14 cd00326 alpha_CA Carbonic anhy 100.0 3.1E-32 6.6E-37 204.8 12.1 103 7-116 20-123 (227)
15 PLN02202 carbonate dehydratase 99.9 1.8E-25 3.9E-30 173.3 10.2 87 6-119 73-161 (284)
16 PLN02179 carbonic anhydrase 99.9 2.4E-25 5.1E-30 168.6 9.7 80 16-119 86-168 (235)
17 cd03124 alpha_CA_prokaryotic_l 99.9 1.2E-24 2.6E-29 162.7 10.0 85 7-119 36-123 (216)
18 COG3338 Cah Carbonic anhydrase 99.9 2.7E-22 5.8E-27 150.0 7.8 82 16-119 74-156 (250)
19 PF09211 DUF1958: Domain of un 59.0 3.6 7.9E-05 25.4 0.3 14 70-83 8-21 (65)
20 PF00976 ACTH_domain: Corticot 47.9 8.5 0.00018 21.2 0.6 7 59-65 6-12 (39)
21 PF13856 Gifsy-2: ATP-binding 26.9 21 0.00045 23.0 -0.0 13 68-80 20-32 (95)
22 cd07882 RHD-n_TonEBP N-termina 23.8 2.1E+02 0.0046 20.7 4.6 32 58-90 13-44 (161)
23 PF07385 DUF1498: Protein of u 21.4 1.7E+02 0.0037 22.4 3.9 31 54-89 98-128 (225)
24 COG3402 Uncharacterized conser 20.6 55 0.0012 23.7 1.1 30 43-77 109-138 (161)
No 1
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=5.1e-37 Score=232.21 Aligned_cols=109 Identities=51% Similarity=0.922 Sum_probs=96.6
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcc
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGE 82 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E 82 (120)
.|.++. ++|+..... +|.|+ |||++.+.+ +.+.+.||+|..+|+|.|||||||++++.||||+|||++||||
T Consensus 19 ~l~~l~----~~y~~~~~~-~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~yp~E 93 (236)
T cd03149 19 KLKPLS----LSYDPCTSL-SISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSGSEHTVDGKTFPSE 93 (236)
T ss_pred CCCceE----eecCCCcce-EEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCCCceeecCeeccce
Confidence 355554 478765443 59999 999999864 4578899999999999999999999999999999999999999
Q ss_pred eeeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 83 LHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 83 ~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
|||||+|.++|.|+++|+.++||||||||||++|++|
T Consensus 94 ~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n 130 (236)
T cd03149 94 LHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEH 130 (236)
T ss_pred eeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCC
Confidence 9999999878999999999999999999999999864
No 2
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=8.1e-37 Score=231.11 Aligned_cols=109 Identities=45% Similarity=0.792 Sum_probs=96.9
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcc
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGE 82 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E 82 (120)
.|.|+. ++|+..... +|.|| |||++.+.+ +.+.+.||+|..+|+|.|||||||++++.||||+|||++||||
T Consensus 19 ~l~~l~----~~y~~~~~~-~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E 93 (236)
T cd03118 19 QLAPLR----VSYDPATCL-YIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWGSEHTVDGHTYPAE 93 (236)
T ss_pred CCCceE----EecCCCCce-EEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCCCceEECCEeccce
Confidence 456655 478764444 59999 999999864 3578899999999999999999999999999999999999999
Q ss_pred eeeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 83 LHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 83 ~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
|||||+|.++|.++++|+..+|||||||||+++|++|
T Consensus 94 ~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n 130 (236)
T cd03118 94 LHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHH 130 (236)
T ss_pred eeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcC
Confidence 9999999889999999999999999999999999764
No 3
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=3.8e-36 Score=229.78 Aligned_cols=108 Identities=32% Similarity=0.630 Sum_probs=94.5
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecC-CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcce
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE-RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGEL 83 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~-~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~ 83 (120)
.|.||.. +|...... +|.|+ |||+|.+.+ ..+.+.||+|..+|+|.|||||||+++..||||+|||++|||||
T Consensus 36 ~l~~L~~----~~~~~~~~-~l~N~Ghtv~v~~~~~~~~~i~gG~l~~~Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~ 110 (256)
T cd03121 36 FLTPLRI----DTGRKVSG-TFYNTGRHVSFRPDKDPVVNISGGPLSYRYRLEEIRLHFGREDEQGSEHTVNGQAFPGEV 110 (256)
T ss_pred CCCceee----ccCCCCce-EEEECCEEEEEEECCCCceEEeCCCCCCcEEEEEEEEecCCCCCCCCceeeCCcccCceE
Confidence 4566653 56532333 59999 999999865 34678899999999999999999999999999999999999999
Q ss_pred eeEEecCCCCCChhhhcCCCCceEEEEEEEEEecC
Q psy81 84 HLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEK 118 (120)
Q Consensus 84 H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~ 118 (120)
||||+|.++|.+++||+++++|+|||||||++|+.
T Consensus 111 HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~ 145 (256)
T cd03121 111 QLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGET 145 (256)
T ss_pred EEEEEcccccCCHHHHhcCCCCeEEEEEEEeeccc
Confidence 99999988999999999999999999999999963
No 4
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1.1e-35 Score=227.46 Aligned_cols=108 Identities=55% Similarity=0.919 Sum_probs=95.8
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcc
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGE 82 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E 82 (120)
+|.++. ++|+..... .|.|+ |||++.+.+ +.+.+.||+|..+|+|.|||||||++++.||||+|||++||||
T Consensus 43 ~l~~l~----~~y~~~~~~-~l~N~G~tv~~~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E 117 (259)
T cd03119 43 SLKPLS----VSYDPATAK-TILNNGHSFNVEFDDTDDRSVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAE 117 (259)
T ss_pred CCCcee----cccccCcce-EEEeCCeeEEEEeCCCCCcceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccce
Confidence 455554 478865444 59999 999999864 3578889999999999999999999999999999999999999
Q ss_pred eeeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 83 LHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 83 ~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
|||||+|. +|.++++|+..++||||||||+++|++|
T Consensus 118 ~HlVH~n~-~y~~~~~A~~~~~glaVvgvl~~~g~~n 153 (259)
T cd03119 118 LHLVHWNS-KYGSFGEAAKQPDGLAVVGVFLKVGEAN 153 (259)
T ss_pred EEEEEecc-cCCCHHHHhcCCCCeEEEEEEEEecccc
Confidence 99999998 8999999999999999999999999754
No 5
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=1.6e-35 Score=226.30 Aligned_cols=102 Identities=37% Similarity=0.726 Sum_probs=92.2
Q ss_pred ccCCCCCCcceEEeC-CceeEeecCCceeecCCcCC--ccEEEEeEEeeecCCCCCCCceeeCCcccCcceeeEEecCCC
Q psy81 16 CSCSPCDERGKVVNN-YRPPLPLGERVLQLTGGPLH--HKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDK 92 (120)
Q Consensus 16 ~~Y~~~~~~~~i~N~-~tv~v~~~~~~~~i~gg~l~--~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~~~ 92 (120)
++|+..... +|.|+ |||+|.+.+ .+.++||+|. .+|+|.|||||||+++..||||+|||++|||||||||+|.++
T Consensus 39 ~~y~~~~~~-~l~N~Ghtv~v~~~~-~~~~~gg~l~~~~~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~ 116 (256)
T cd03120 39 PNYVVCRDC-EVINDGHTIQIILKS-KSVLSGGPLPQGHEFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTL 116 (256)
T ss_pred eccCCCCce-EEEECCeEEEEEeCC-CceeecCCCCCCceEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcc
Confidence 578754444 59999 999999875 4788999995 689999999999999999999999999999999999999888
Q ss_pred CCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 93 YSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 93 y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
|.++++|++.+||||||||||++|++|
T Consensus 117 y~~~~~A~~~~~glaVlgv~~~~g~~n 143 (256)
T cd03120 117 YSSLEEAMGKPHGIAIIALFVQIGKEH 143 (256)
T ss_pred cCCHHHHhcCCCceEEEEEEEeecCCC
Confidence 999999999999999999999999865
No 6
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=4.1e-35 Score=221.49 Aligned_cols=107 Identities=36% Similarity=0.586 Sum_probs=95.5
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCccee
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELH 84 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H 84 (120)
+|.||.+ .+|+..+...+|.|+ |||++.+.+ .+.+.||+|+..|+|.|||||||+++..||||+|||++||||||
T Consensus 19 ~l~~L~~---~~y~~~~~~~~l~N~G~tv~v~~~~-~~~i~gg~L~~~Y~l~qfHfH~G~~~~~gSEH~idg~~~~~E~H 94 (234)
T cd03117 19 NLTPFTF---TGYDDTTTNWTITNNGHTVQVTLPD-GAKISGGGLPGTYKALQFHFHWGSNGSPGSEHTIDGERYPMELH 94 (234)
T ss_pred CCCccee---ccccCCCCceEEEECCeEEEEEecC-CceEeCCCCCCcEEEEEEEEEeCCCCCCCCcceeCCeecchhee
Confidence 5677765 368763223359999 999999875 68899999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCChhhhcCCCCceEEEEEEEEEec
Q psy81 85 LVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLE 117 (120)
Q Consensus 85 ~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~ 117 (120)
|||+|. +|.++++|++.++|+|||||||++|+
T Consensus 95 lVH~n~-~~~~~~~A~~~~~~laVv~vl~~~~~ 126 (234)
T cd03117 95 IVHIKE-SYNSLLEALKDSDGLAVLGFFIEEGE 126 (234)
T ss_pred eeEecC-CCCCHHHHhcCCCceEEEEEEEEecC
Confidence 999998 79999999999999999999999994
No 7
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=1.4e-34 Score=220.79 Aligned_cols=107 Identities=26% Similarity=0.465 Sum_probs=92.3
Q ss_pred CCCCCCCCcccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcce
Q psy81 7 LKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGEL 83 (120)
Q Consensus 7 L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~ 83 (120)
|.|+.. ..|+......+|.|+ |||+|.+.+ +.+.+.||+|..+|+|.|||||||+++..||||+|||++|||||
T Consensus 34 l~~l~~---~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~ 110 (253)
T cd03122 34 LQPLHF---DGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLLGRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEM 110 (253)
T ss_pred CCCeEE---eccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCCCcEEEEEEEEEeCCCCCCCCceeecCccCcceE
Confidence 666664 234432233369999 999999864 35889999999999999999999999999999999999999999
Q ss_pred eeEEecCCCCCChhhhcCCCCceEEEEEEEEEec
Q psy81 84 HLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLE 117 (120)
Q Consensus 84 H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~ 117 (120)
||||+|. +|.+..||++.++|||||||||++|+
T Consensus 111 H~VH~n~-~~~~~~~A~~~~~~laVv~vl~~~g~ 143 (253)
T cd03122 111 QILHRNT-DFFDSFEAIKSPGGVLALAYLFELSH 143 (253)
T ss_pred EEEEEcC-CCCCHHHHhhcCCCeEEEEEEEEEec
Confidence 9999998 67777799999999999999999983
No 8
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=1.5e-34 Score=220.26 Aligned_cols=109 Identities=41% Similarity=0.626 Sum_probs=91.4
Q ss_pred CCCCCCCCCCcccCCCCC-CcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCC-CCCceeeCCcccCc
Q psy81 5 RSLKSIEEGTGCSCSPCD-ERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSN-KGSEHTVDGKAYAG 81 (120)
Q Consensus 5 r~L~~l~~~~~~~Y~~~~-~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~-~gSEH~idg~~~~~ 81 (120)
.+|.||.. .+|+... ...+|.|+ |||+|.+.++ .. .++|+.+|+|.|||||||++++ .||||+|||++|||
T Consensus 31 ~~l~~l~~---~~y~~~~~~~~~l~N~Ghtv~v~~~~~-~~--~~~l~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~ 104 (249)
T cd03126 31 SSLPPLEF---HGYNVSGTEQFTLTNNGHTVQLSLPPT-MH--IGGLPFKYTASQLHLHWGQRGSPEGSEHTISGKHFAA 104 (249)
T ss_pred CCCCccEE---eccccCCCCceEEEECCEeEEEEEcCC-ce--ecCCCccEEEEEEEEEeCCCCCCCCceeeecCcccCc
Confidence 45666664 3688642 23359999 9999998743 33 3457789999999999999654 89999999999999
Q ss_pred ceeeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 82 ELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 82 E~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
||||||+|.++|.++++|+..++|||||||||++|++|
T Consensus 105 E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n 142 (249)
T cd03126 105 ELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFN 142 (249)
T ss_pred eEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCC
Confidence 99999999889999999999999999999999998754
No 9
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=1.2e-34 Score=220.60 Aligned_cols=106 Identities=36% Similarity=0.601 Sum_probs=91.3
Q ss_pred CCCCCCCCCcccCCCCC-CcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcce
Q psy81 6 SLKSIEEGTGCSCSPCD-ERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGEL 83 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~-~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~ 83 (120)
+|.|+.. .+|+... ...+|.|| |||+|.+.+ ...++||+ ..+|+|.|||||||++++.||||+|||++|||||
T Consensus 32 ~l~~l~~---~~y~~~~~~~~~i~N~Ghtv~v~~~~-~~~~~~g~-~~~Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~ 106 (247)
T cd03150 32 ALRPLEL---LGFDLPPSPSLRLLNNGHTVQLSLPS-GLRMALGP-GQEYRALQLHLHWGAAGRPGSEHTVDGHRFPAEI 106 (247)
T ss_pred CCCCcee---eccccCCCCceEEEECCEEEEEEEec-ccccccCC-CCcEEEEEEEEEeCCCCCCCcceeeCCcccchhh
Confidence 4566654 3677432 23359999 999999874 35677776 6899999999999999999999999999999999
Q ss_pred eeEEecCCCCCChhhhcCCCCceEEEEEEEEEec
Q psy81 84 HLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLE 117 (120)
Q Consensus 84 H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~ 117 (120)
||||+|+ +|.+++||++.++|||||||||++|+
T Consensus 107 HlVH~n~-~y~~~~~A~~~~~glaVl~v~~~~g~ 139 (247)
T cd03150 107 HVVHLST-AFANLDEALGRPGGLAVLAAFLAEGL 139 (247)
T ss_pred heeeecc-cCCCHHHHhcCCCCcEEEEEEEEecC
Confidence 9999998 89999999999999999999999985
No 10
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=4.3e-34 Score=217.58 Aligned_cols=109 Identities=45% Similarity=0.716 Sum_probs=92.4
Q ss_pred CCCCCCCCCcccCCCCCC-cceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCC-CCCCceeeCCcccCcc
Q psy81 6 SLKSIEEGTGCSCSPCDE-RGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVS-NKGSEHTVDGKAYAGE 82 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~-~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~-~~gSEH~idg~~~~~E 82 (120)
+|.+|.. .+|+.... ..+|.|+ |||+|.+.+ ...++||+ ..+|+|.|||||||+.+ ..||||+|||++||||
T Consensus 32 ~l~~l~~---~~y~~~~~~~~~i~N~Ghtv~v~~~~-~~~~~gg~-~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E 106 (248)
T cd03123 32 SLPPLEL---VGYDLPGTEEFTLTNNGHTVQLSLPP-TMHIRGGP-GTEYTAAQLHLHWGGRGSLSGSEHTIDGIRFAAE 106 (248)
T ss_pred CCCccee---cccccCCCCceEEEECCeeEEEEeCC-CccccCCC-CCCEEEEEEEEeeCCCCCCCCccceecCccCcce
Confidence 4566664 36876432 3359999 999999875 35677765 57999999999999988 5899999999999999
Q ss_pred eeeEEecCCCCCChhhhcCCCCceEEEEEEEEEe-cCC
Q psy81 83 LHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVL-EKK 119 (120)
Q Consensus 83 ~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g-~~~ 119 (120)
|||||+|.++|.++++|++.++|+|||||||++| .+|
T Consensus 107 ~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n 144 (248)
T cd03123 107 LHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPEN 144 (248)
T ss_pred eEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCC
Confidence 9999999889999999999999999999999999 443
No 11
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=6e-34 Score=216.96 Aligned_cols=107 Identities=39% Similarity=0.598 Sum_probs=90.9
Q ss_pred CCCCCCCCCCcccCCCCCCcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCC--CCCceeeCCcccCc
Q psy81 5 RSLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSN--KGSEHTVDGKAYAG 81 (120)
Q Consensus 5 r~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~--~gSEH~idg~~~~~ 81 (120)
.+|.++.. .+|+......+|.|+ |||+|.+.++ ..++|+ +..+|+|.|||||||.++. .||||+|||++|||
T Consensus 31 ~~l~~l~~---~~y~~~~~~~~i~N~Ghtv~v~~~~~-~~~~~~-~~~~Y~l~q~HFHWG~~~~~~~gSEH~idG~~yp~ 105 (249)
T cd03125 31 PSLLQLEL---VGYEKEQGEFTMTNNGHTVQIDLPPT-MSITTG-DGTVYTAVQMHFHWGGRDSEISGSEHTIDGMRYVA 105 (249)
T ss_pred CCCCceEe---ecccCCCccEEEEECCEEEEEEeCCC-cccccC-CCCCEEEEEEEEEecCCCCCCCCccceeccccCCc
Confidence 34666654 378864433469999 9999998753 445554 5689999999999999875 79999999999999
Q ss_pred ceeeEEecCCCCCChhhhcCCCCceEEEEEEEEEec
Q psy81 82 ELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLE 117 (120)
Q Consensus 82 E~H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~ 117 (120)
||||||+|. +|.++++|...++|||||||||++|+
T Consensus 106 E~HlVH~n~-~y~~~~~a~~~~~glaVl~v~~~~~~ 140 (249)
T cd03125 106 ELHIVHYNS-KYKSYEEAKDKPDGLAVLAFLYKVGH 140 (249)
T ss_pred eEEEEEecC-CCCCHHHHhcCCCceEEEEEEEEecc
Confidence 999999998 89999999999999999999999997
No 12
>KOG0382|consensus
Probab=100.00 E-value=8.9e-34 Score=217.31 Aligned_cols=100 Identities=47% Similarity=0.805 Sum_probs=90.3
Q ss_pred ccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCc-cEEEEeEEeeecCCCCCCCceeeCCcccCcceeeEEecCC
Q psy81 16 CSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHH-KYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSD 91 (120)
Q Consensus 16 ~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~-~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~~ 91 (120)
++|+...... +.|| +++.|.+.. +.+.++||+|.. +|++.|+|||||+.++.||||||||++||||||+|||| +
T Consensus 51 ~~~~~~~~~~-~~nng~~~~v~~~~~~~~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n-~ 128 (262)
T KOG0382|consen 51 LSYEYKPCNA-VLNNGHSRGVDIMLKGGKPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWN-T 128 (262)
T ss_pred eecccCcceE-EEeCCceEEEEeecCCCCcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEec-c
Confidence 4677777665 8888 777776643 467899999988 89999999999999999999999999999999999999 5
Q ss_pred CCCChhhhcCCCCceEEEEEEEEEec
Q psy81 92 KYSTFGEAAGQPDGLAVLGVLLEVLE 117 (120)
Q Consensus 92 ~y~~~~~A~~~~~glaVl~v~~~~g~ 117 (120)
+|.+++||+++++||||||||+++|+
T Consensus 129 ~y~~~~eA~~~p~GlAVv~vf~k~g~ 154 (262)
T KOG0382|consen 129 KYENFKEALSKPDGLAVVGVFLKIGK 154 (262)
T ss_pred ccCCHHHHhcCCCcEEEEEEeecccC
Confidence 99999999999999999999999997
No 13
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=1.4e-33 Score=215.03 Aligned_cols=103 Identities=48% Similarity=0.794 Sum_probs=90.3
Q ss_pred ccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcceeeEEecCCC
Q psy81 16 CSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDK 92 (120)
Q Consensus 16 ~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~~~ 92 (120)
+.|+..... +|.|+ |+|+|.+++ ..+.+.||+|..+|+|.|||||||+++..||||+|||++|||||||||++.++
T Consensus 45 ~~~~~~~~~-~~~N~G~tv~v~~~~~~~~~~i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~ 123 (256)
T PF00194_consen 45 FSYYESSAG-TLKNNGHTVQVNFDDTNNKPTISGGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKK 123 (256)
T ss_dssp EESTTSGEE-EEEE-SSSEEEEECTSSSSSEEEETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTT
T ss_pred Eeeccccce-EEEecCceEEEEeCCCcccceecCCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeecccc
Confidence 467665544 59999 999999976 35789999999999999999999999999999999999999999999999669
Q ss_pred CCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 93 YSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 93 y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
|.++++|...++|+||||||+++|+.|
T Consensus 124 y~~~~~a~~~~~~laVl~v~~~~~~~n 150 (256)
T PF00194_consen 124 YSSFEEASKEPDGLAVLGVFFEIGESN 150 (256)
T ss_dssp GSSHHHHTTSTTSEEEEEEEEEESS--
T ss_pred ccchhhhhhccccceEEEEEeeccccc
Confidence 999999999999999999999999754
No 14
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=99.98 E-value=3.1e-32 Score=204.84 Aligned_cols=103 Identities=47% Similarity=0.729 Sum_probs=89.5
Q ss_pred CCCCCCCCcccCCCCCCcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcceee
Q psy81 7 LKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHL 85 (120)
Q Consensus 7 L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~ 85 (120)
|.++.. .|...... .|.|+ |||++.+.++...+++++|..+|+|.|||||||+.+..||||+|||++|||||||
T Consensus 20 l~~l~~----~~~~~~~~-~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSEH~i~g~~y~~E~H~ 94 (227)
T cd00326 20 LPPLNF----DYYPTTSL-TLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSEHTIDGKRYPLELHL 94 (227)
T ss_pred CCceee----cccCCCce-EEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCcceeCCEeccccceE
Confidence 566654 34432333 59999 9999999754578899999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChhhhcCCCCceEEEEEEEEEe
Q psy81 86 VHWNSDKYSTFGEAAGQPDGLAVLGVLLEVL 116 (120)
Q Consensus 86 Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g 116 (120)
||++. +|.+. ||.++++++||||||+++|
T Consensus 95 Vh~~~-~~~~~-~a~~~~~~laVv~v~~~~~ 123 (227)
T cd00326 95 VHYNS-DYYSS-EAAKKPGGLAVLGVFFEVG 123 (227)
T ss_pred EEECC-CCCCh-hhhccCCCeEEEEEEEEec
Confidence 99998 67666 9999999999999999998
No 15
>PLN02202 carbonate dehydratase
Probab=99.93 E-value=1.8e-25 Score=173.26 Aligned_cols=87 Identities=30% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCCCCCCCCcccCCCCCCcceEEeC-CceeEeecC-CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcce
Q psy81 6 SLKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE-RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGEL 83 (120)
Q Consensus 6 ~L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~-~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~ 83 (120)
+|.|+. ++|.... . .|.|+ |||++.+.+ +.....|| .+|+|.|||||| ||||+|||++|||||
T Consensus 73 ~l~~l~----~~~~~~~-~-~l~N~Ghtv~v~~~~~~~~~~~~g---~~Y~L~QfHFH~------gSEH~idG~~yp~E~ 137 (284)
T PLN02202 73 KLESIH----RDYYFTN-A-TLVNHVCNVAMFFGEGAGDVIIDN---KNYTLLQMHWHT------PSEHHLHGVQYAAEL 137 (284)
T ss_pred CCCcee----eeccCCc-e-EEEECCccEEEEEcCCCCeeEECC---cEEEEEEEEecC------CcccEECCeeCCeEE
Confidence 345554 3666443 3 49999 999999853 33445555 689999999998 799999999999999
Q ss_pred eeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 84 HLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 84 H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
||||++. ++++|||||||++|++|
T Consensus 138 H~VH~~~------------~g~laVlgv~~~~g~~n 161 (284)
T PLN02202 138 HMVHQAK------------DGSFAVVASLFKIGTEE 161 (284)
T ss_pred EEEEEcC------------CCCEEEEEEEEeccCCC
Confidence 9999997 68899999999999754
No 16
>PLN02179 carbonic anhydrase
Probab=99.92 E-value=2.4e-25 Score=168.61 Aligned_cols=80 Identities=29% Similarity=0.405 Sum_probs=66.8
Q ss_pred ccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcceeeEEecCCC
Q psy81 16 CSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDK 92 (120)
Q Consensus 16 ~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~~~ 92 (120)
+.|.+.. . +|.|| |||++.+.+ +.+.+.| .+|+|.|||||| ||||+|||++|||||||||+|+
T Consensus 86 ~~y~~~~-~-~i~N~Ghtv~v~~~~~~~~~~i~g----~~Y~L~QfHFH~------gSEH~InG~~yp~E~H~VH~n~-- 151 (235)
T PLN02179 86 RHYKPAP-A-VIQSRGHDVMVSWKGDAGKITIHQ----TDYKLVQCHWHS------PSEHTINGTSYDLELHMVHTSA-- 151 (235)
T ss_pred cccCCcc-E-EEEECCeEEEEEecCCCCeeEecC----cEEEEEEEEecC------CcceEecccccCeeEEEEEEcC--
Confidence 3566543 3 59999 999999864 2344433 789999999997 8999999999999999999997
Q ss_pred CCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 93 YSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 93 y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
++++||||||+++|++|
T Consensus 152 ----------~g~laVlgvl~~~g~~n 168 (235)
T PLN02179 152 ----------SGKTAVVGVLYKLGEPD 168 (235)
T ss_pred ----------CCCeEEEEEEEecCCCC
Confidence 67899999999999865
No 17
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=99.92 E-value=1.2e-24 Score=162.68 Aligned_cols=85 Identities=35% Similarity=0.521 Sum_probs=69.7
Q ss_pred CCCCCCCCcccCCCCCCcceEEeC-CceeEeecC--CceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcce
Q psy81 7 LKSIEEGTGCSCSPCDERGKVVNN-YRPPLPLGE--RVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGEL 83 (120)
Q Consensus 7 L~~l~~~~~~~Y~~~~~~~~i~N~-~tv~v~~~~--~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~ 83 (120)
+.+|. +.|.. .. .++.|+ ||+++.+.+ +.+.+.| .+|+|.|||||| ||||+|||++|||||
T Consensus 36 ~~~l~----~~~~~-~~-~~l~N~G~tv~~~~~~~~~~~~~~g----~~Y~l~q~HfH~------gSEH~idg~~y~~El 99 (216)
T cd03124 36 LPPLN----YNYKP-TS-ATLVNNGHTIQVNFEGNGGTLTIDG----ETYQLLQFHFHS------PSEHLINGKRYPLEA 99 (216)
T ss_pred CCCce----eeccC-Cc-eEEEECCceEEEEEcCCCCeEEECC----cEEEEEEEEecC------CcccEeccccCCcee
Confidence 55555 35655 23 359999 999999874 2344444 789999999998 899999999999999
Q ss_pred eeEEecCCCCCChhhhcCCCCceEEEEEEEEEecCC
Q psy81 84 HLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 84 H~Vh~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
||||++. ++++||||||+++|.+|
T Consensus 100 H~Vh~~~------------~~~laVl~v~~~~~~~n 123 (216)
T cd03124 100 HLVHKSK------------DGQLAVVAVLFEEGKEN 123 (216)
T ss_pred eEEEEcC------------CCCEEEEEEEEeecCCC
Confidence 9999997 78999999999998654
No 18
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.7e-22 Score=149.96 Aligned_cols=82 Identities=34% Similarity=0.449 Sum_probs=69.5
Q ss_pred ccCCCCCCcceEEeC-CceeEeecCCceeecCCcCCccEEEEeEEeeecCCCCCCCceeeCCcccCcceeeEEecCCCCC
Q psy81 16 CSCSPCDERGKVVNN-YRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94 (120)
Q Consensus 16 ~~Y~~~~~~~~i~N~-~tv~v~~~~~~~~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~~~y~ 94 (120)
.+|.++. . +|.|| ||||+.+.+++..+.+. ...|.|.||||| .||||.|||+.||||.||||.++
T Consensus 74 ~~Y~~s~-~-~i~nnghTiqv~~~~~~n~l~~~--gk~y~L~qfHFH------~PsEhlv~Gk~~pmEaHFVHkd~---- 139 (250)
T COG3338 74 LNYQPSA-V-TIKNNGHTIQVNFEPGSNHLRYD--GKTYQLVQFHFH------APSEHLVDGKSFPMEAHFVHKDA---- 139 (250)
T ss_pred eeeccCc-e-EEEecCcEEEEeccCCCcceeec--CcEEEEEEEEec------CchHHhhccccccceeeeeecCC----
Confidence 4788743 3 59999 99999998653333332 189999999999 89999999999999999999998
Q ss_pred ChhhhcCCCCceEEEEEEEEEecCC
Q psy81 95 TFGEAAGQPDGLAVLGVLLEVLEKK 119 (120)
Q Consensus 95 ~~~~A~~~~~glaVl~v~~~~g~~~ 119 (120)
++.|||+|||++.|.+|
T Consensus 140 --------~g~L~Vl~v~~~~g~eN 156 (250)
T COG3338 140 --------KGTLAVLAVLLQAGAEN 156 (250)
T ss_pred --------CCCEEEEEEeeecCCCC
Confidence 78899999999999876
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=58.96 E-value=3.6 Score=25.37 Aligned_cols=14 Identities=50% Similarity=0.741 Sum_probs=11.5
Q ss_pred CceeeCCcccCcce
Q psy81 70 SEHTVDGKAYAGEL 83 (120)
Q Consensus 70 SEH~idg~~~~~E~ 83 (120)
.||+|||+.|-.+=
T Consensus 8 G~h~IdGk~y~v~k 21 (65)
T PF09211_consen 8 GEHTIDGKKYYVKK 21 (65)
T ss_dssp EEEEETTEEEEESS
T ss_pred ccEEECCEEEEecC
Confidence 49999999987653
No 20
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=47.92 E-value=8.5 Score=21.22 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=5.9
Q ss_pred EeeecCC
Q psy81 59 HCHWGCV 65 (120)
Q Consensus 59 HfHWG~~ 65 (120)
||.||..
T Consensus 6 hfrwgkp 12 (39)
T PF00976_consen 6 HFRWGKP 12 (39)
T ss_pred ceeccCC
Confidence 8999975
No 21
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=26.93 E-value=21 Score=22.97 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=9.5
Q ss_pred CCCceeeCCcccC
Q psy81 68 KGSEHTVDGKAYA 80 (120)
Q Consensus 68 ~gSEH~idg~~~~ 80 (120)
-|.+|+|||+.++
T Consensus 20 fg~~~~InG~~~~ 32 (95)
T PF13856_consen 20 FGEEHTINGKPYR 32 (95)
T ss_dssp H-EEEEETTEEEE
T ss_pred hCCeEEECCEEEE
Confidence 4789999997655
No 22
>cd07882 RHD-n_TonEBP N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt.
Probab=23.79 E-value=2.1e+02 Score=20.71 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=24.7
Q ss_pred EEeeecCCCCCCCceeeCCcccCcceeeEEecC
Q psy81 58 FHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNS 90 (120)
Q Consensus 58 ~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n~ 90 (120)
+.||...+.++||=..-.|+.||- +.+..|+.
T Consensus 13 ~RaRY~tEGSrGsvk~~s~~~~Pt-Vkl~gy~g 44 (161)
T cd07882 13 HRARYLTEGSRGSVKDRSQQGFPT-VKLEGYNK 44 (161)
T ss_pred ceEeeeccCcCccccCCCCCcCCe-EEEeccCC
Confidence 678888888888888777888884 77777764
No 23
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=21.37 E-value=1.7e+02 Score=22.36 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=18.3
Q ss_pred EEEeEEeeecCCCCCCCceeeCCcccCcceeeEEec
Q psy81 54 RLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWN 89 (120)
Q Consensus 54 ~l~q~HfHWG~~~~~gSEH~idg~~~~~E~H~Vh~n 89 (120)
+..-+|||| .=.|-.||.---.+.+.+..-.
T Consensus 98 Q~tP~H~H~-----~K~EDIINRGGG~L~i~l~~s~ 128 (225)
T PF07385_consen 98 QVTPMHFHW-----KKMEDIINRGGGNLVIELYNSD 128 (225)
T ss_dssp -EEEEEEES-----S--EEEEEEEES-EEEEEEEB-
T ss_pred CcCCcccCc-----chhhheeecCCceEEEEEEecc
Confidence 678899999 4468888854445556665443
No 24
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=55 Score=23.69 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.9
Q ss_pred eecCCcCCccEEEEeEEeeecCCCCCCCceeeCCc
Q psy81 43 QLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGK 77 (120)
Q Consensus 43 ~i~gg~l~~~Y~l~q~HfHWG~~~~~gSEH~idg~ 77 (120)
-..-|||...|.|.++-.+- .+|-|+|.+-
T Consensus 109 Dt~~GPL~R~~~La~vti~T-----Ass~~~IeaL 138 (161)
T COG3402 109 DTEQGPLLRRYGLATVTITT-----ASSDHTIEAL 138 (161)
T ss_pred ecccChHHHHhCcceEEEEe-----ccccceeccc
Confidence 45789999999999999984 6778888763
Done!