RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy81
(120 letters)
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 134 bits (339), Expect = 1e-40
Identities = 40/81 (49%), Positives = 50/81 (61%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
++GGPL + YRL+QFH HWG GSEH VDG Y ELHLVHWNS KY
Sbjct: 49 FDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYE 108
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
+A+ +GLAV+GV L++
Sbjct: 109 NCKKASVGENGLAVIGVFLKL 129
Score = 34.3 bits (79), Expect = 0.005
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQ 43
L FR+L G +E +VNNYRP PL +R L+
Sbjct: 202 LSMFRTLLFSGRG--------EEEDVMVNNYRPLQPLRDRKLR 236
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 128 bits (323), Expect = 3e-38
Identities = 44/81 (54%), Positives = 53/81 (65%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
+ L GGP YRL QFH HWG + GSEHTVDG Y+ ELH+ HWNS KYS
Sbjct: 70 FEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYS 129
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
+ EAA + DGLAV+GVL++V
Sbjct: 130 SLAEAASKADGLAVIGVLMKV 150
Score = 34.4 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L FRSL S EG D + +N RP PL R
Sbjct: 223 LAQFRSLLSNVEG--------DNAVPMQHNNRPTQPLKGRT 255
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 126 bits (318), Expect = 2e-37
Identities = 48/81 (59%), Positives = 55/81 (67%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
E L GGPL YRL Q H HWG + GSEH VDG +YA ELH+VHWNSDKY
Sbjct: 73 FDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYP 132
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
+F EAA +PDGLAVLGV L++
Sbjct: 133 SFVEAAHEPDGLAVLGVFLQI 153
Score = 34.0 bits (78), Expect = 0.007
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L FRSL EG + +V+N+RPP PL R
Sbjct: 226 LAKFRSLLCTAEG--------EAAAFLVSNHRPPQPLKGRK 258
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 126 bits (317), Expect = 3e-37
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 43 QLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
++GG L ++Y L H +WG + GS H +D Y+GE++LVHWN KYS++ EA
Sbjct: 51 YISGGFLPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKH 110
Query: 103 PDGLAVLGVLLEVLEKK 119
DGL ++ + L+VL+ K
Sbjct: 111 DDGLIIISIFLQVLDHK 127
Score = 32.9 bits (75), Expect = 0.015
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQLTGGP 48
L FR+L S+ G + NYR P L + G
Sbjct: 196 LSKFRTLLSLSNHEGKPH-------YITENYRNPYKLNDDTEVYYSGE 236
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 124 bits (314), Expect = 7e-37
Identities = 50/81 (61%), Positives = 58/81 (71%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
+ +TGGPL YRL+QFH HWG + GSEHTVDGK++ ELHLVHWN+ KYS
Sbjct: 77 FNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYS 136
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
TFGEAA PDGLAV+GV LE
Sbjct: 137 TFGEAASAPDGLAVVGVFLET 157
Score = 34.0 bits (78), Expect = 0.005
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ FRSL E DER +VNN+RPP PL RV
Sbjct: 230 MGKFRSLLFTSED--------DERIHMVNNFRPPQPLKGRV 262
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 124 bits (312), Expect = 1e-36
Identities = 48/81 (59%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
+ L GGPL YRL QFH HWG + +GSEHTVD K YA ELHLVHWN+ KY
Sbjct: 70 FDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNT-KYG 128
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
FG+A QPDGLAVLG+ L+V
Sbjct: 129 DFGKAVQQPDGLAVLGIFLKV 149
Score = 33.9 bits (78), Expect = 0.007
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ FR L EG + +V+N+RP PL R
Sbjct: 222 VLKFRKLNFNGEG--------EPEELMVDNWRPAQPLKNRQ 254
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 123 bits (311), Expect = 2e-36
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCV-SNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
L G L KY Q H HWG S +GSEH ++ +A A ELH+VH++S YS+ EAA +
Sbjct: 77 LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQK 136
Query: 103 PDGLAVLGVLLEV 115
P GLAVLG+L+EV
Sbjct: 137 PQGLAVLGILIEV 149
Score = 33.2 bits (76), Expect = 0.012
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L+ + S E D +V NYR P PL +R
Sbjct: 224 LEKLQETLSSTEE--------DPSEPLVQNYRVPQPLNQRT 256
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 122 bits (309), Expect = 4e-36
Identities = 45/81 (55%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
L GGPL YRL QFH HWG + GSEHTVDG YA ELHLVHWN KY+
Sbjct: 70 FDDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNP-KYN 128
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
TF EA Q DG+AV+G+ L++
Sbjct: 129 TFKEALKQRDGIAVIGIFLKI 149
Score = 34.0 bits (78), Expect = 0.006
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ RSL S E + +V+N+RPP P+ RV
Sbjct: 222 MAKLRSLLSSAEN--------EPPVPLVSNWRPPQPINNRV 254
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 122 bits (308), Expect = 9e-36
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 45 TGGPLH--HKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
+GGPL H++ L + HWG + +GSEHTV+ KA+ ELHL+HWNS + + EA G+
Sbjct: 101 SGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGK 160
Query: 103 PDGLAVLGVLLEV 115
P G+A++ + +++
Sbjct: 161 PHGIAIIALFVQI 173
Score = 35.6 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
++ FR L++ +G G + +N+RP PL +RV
Sbjct: 248 IEEFRRLRTHVKGA---ELVEGCDGILGDNFRPTQPLSDRV 285
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 121 bits (306), Expect = 1e-35
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDK-YSTFGEAAGQ 102
++GG L Y+ +Q H HW + KGSEH++DG+ +A E+H+VH EA
Sbjct: 82 ISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDP 141
Query: 103 PDGLAVLGVLLEV 115
D +AVL L+E
Sbjct: 142 EDEIAVLAFLVEA 154
Score = 32.0 bits (73), Expect = 0.024
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ AF ++ ++ + +N RP LG+R
Sbjct: 231 ILAFSQKLYYDK---------EQTVSMKDNVRPLQQLGQRT 262
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 121 bits (306), Expect = 1e-35
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 44 LTGGPLHHKYRLEQFHCHWG-CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
+ L +Y Q H HWG GSEHTV G+ +A ELH+VH+NSD Y A+ +
Sbjct: 76 MHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNK 135
Query: 103 PDGLAVLGVLLEV 115
+GLAVL VL+E+
Sbjct: 136 SEGLAVLAVLIEM 148
Score = 32.8 bits (75), Expect = 0.016
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L A + +++NN+R ER+
Sbjct: 222 LLALETALYCTHMDD------PSPREMINNFRQVQKFDERL 256
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 117 bits (294), Expect = 8e-34
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 43 QLTGGPLHHKYRLEQFHCHWGC--VSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAA 100
+++GG ++ + HWG +S+ GSEH+++G+ + E+ + +++D++S+F EA
Sbjct: 81 RVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEMQIYCFDADRFSSFEEAV 140
Query: 101 GQPDGLAVLGVLLEV 115
L L +L EV
Sbjct: 141 KGKGKLRALSILFEV 155
Score = 34.8 bits (80), Expect = 0.003
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L F + ++++ + NN+R R
Sbjct: 230 LAVFCEVLTMQQSGYVMLMDY-----LQNNFREQQYKFSRQ 265
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 116 bits (293), Expect = 1e-33
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 43 QLTGGPLHHKYRLEQFHCHWG-CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 101
++G L +++ E+ HWG + GSEH+V+G+ + E+ + +N D + +F A
Sbjct: 82 FVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFDSFQTAIS 141
Query: 102 QPDGLAVLGVLLEVLEK 118
+ + + + +V +
Sbjct: 142 ENRIIGAMAIFFQVSPR 158
Score = 35.6 bits (82), Expect = 0.001
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L+AF S+ + E+ + NN+RP L +RV
Sbjct: 230 LEAFYSIFTTEQQDHVKSVEY-----LRNNFRPQQALNDRV 265
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 116 bits (292), Expect = 1e-33
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 43 QLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
++ GP +YR Q H HWG GSEHTV+G + E+H+VH ++ ++ EA G+
Sbjct: 77 EMALGPGR-EYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLST-AFARVDEALGR 134
Query: 103 PDGLAVLGVLLEV 115
P GLAVL LE
Sbjct: 135 PGGLAVLAAFLEE 147
Score = 30.4 bits (69), Expect = 0.088
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 11/41 (26%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L ++ N+R PL RV
Sbjct: 222 LHTLSDTLWGPGD-----------SRLQLNFRATQPLNGRV 251
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 114 bits (287), Expect = 7e-33
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 43 QLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQ 102
+ GG L +Y Q H HW ++ GSEH++DG+ +A E+H+VH
Sbjct: 77 CIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTS-----SKEDS 131
Query: 103 PDGLAVLGVLLEV 115
D AVL ++EV
Sbjct: 132 KDKFAVLAFMIEV 144
Score = 32.8 bits (75), Expect = 0.014
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
F +E D++ + +N RP PLG+R
Sbjct: 221 FLEFSKNLYYDE---------DQKLNMKDNVRPLQPLGKRQ 252
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 110 bits (276), Expect = 5e-31
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSN--KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 101
+ G + Y +Q H HWG S+ GSEHTVDG + E+H+VH+NS KY ++ A
Sbjct: 80 VADGTV---YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNS-KYKSYDIAQD 135
Query: 102 QPDGLAVLGVLLEV 115
PDGLAVL +EV
Sbjct: 136 APDGLAVLAAFVEV 149
Score = 30.5 bits (69), Expect = 0.092
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 11/41 (26%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ + + N+YR PL RV
Sbjct: 225 VWKLENSLLDHRN-----------KTIHNDYRRTQPLNHRV 254
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 108 bits (270), Expect = 5e-30
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQP 103
+ G + QFH H SEHT++G Y ELH+V D A
Sbjct: 115 IEIGGTTKSFVPIQFHFHHF-----LSEHTINGIHYPLELHIVMQEQD------PADVAT 163
Query: 104 DGLAVLGVLLEV 115
LAV+G++ +
Sbjct: 164 AQLAVIGIMYKY 175
Score = 31.4 bits (71), Expect = 0.042
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+K F + G V N R LG+R
Sbjct: 256 MKLFVDVTM-----------GAHAGADVVNNRMIQDLGDRE 285
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 98.2 bits (244), Expect = 7e-26
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 30 NYRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWN 89
+ + + ++ QFH H SEH + GK Y ELH+VH
Sbjct: 134 HNQTNRIVDVLEMRPNDAADRVTAVPTQFHFHST------SEHLLAGKIYPLELHIVHQV 187
Query: 90 SDKYSTFGEAAGQPDGLAVLGVLLEVLE 117
++K A + +V G+L ++
Sbjct: 188 TEKL-----EACKGGCFSVTGILFQLDN 210
Score = 25.1 bits (54), Expect = 7.4
Identities = 4/42 (9%), Positives = 5/42 (11%), Gaps = 11/42 (26%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVL 42
+R E R L
Sbjct: 284 WNRYRLAVG-----------LKECNSTETAADAGHHHHHRRL 314
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 86.3 bits (214), Expect = 3e-22
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 42 LQLTGGPL---HHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGE 98
+ LT G L Y L QFH H SEH V+ + + E+H V + K
Sbjct: 77 VTLTNGSLTANSKTYTLAQFHFHTP------SEHHVNEEHFPMEVHFVFQTAAK------ 124
Query: 99 AAGQPDGLAVLGVLLEVLE 117
AV+G ++ E
Sbjct: 125 ------ETAVVGFFFQLSE 137
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 80.9 bits (200), Expect = 3e-20
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 22/81 (27%)
Query: 35 LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYS 94
P G L + G Y L+QFH H SE+ + G+ + E H VH + +K
Sbjct: 69 YPEGGNTLTVNGRT----YTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENK-- 116
Query: 95 TFGEAAGQPDGLAVLGVLLEV 115
VL VL E
Sbjct: 117 ----------QPLVLAVLYEA 127
Score = 25.8 bits (57), Expect = 3.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 29 NNYRPPLPLGERV 41
N RP PL RV
Sbjct: 208 ENNRPVQPLNARV 220
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET:
DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Length = 174
Score = 27.5 bits (61), Expect = 0.93
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 7 LKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQLTGGP 48
+KSI + +G ++ N P ++ + G P
Sbjct: 126 IKSISQQSGARI-------ELQRNPPPNADPNMKLFTIRGTP 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.1
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 25/54 (46%)
Query: 59 HCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVL 112
W + + H +D FG P G + LGVL
Sbjct: 487 PVKWETTTQFKATHILD--------------------FG-----PGGASGLGVL 515
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET:
XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3
PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A*
3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Length = 393
Score = 26.7 bits (58), Expect = 2.3
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 7/67 (10%)
Query: 52 KYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGE----AAGQPDGLA 107
E H SN + + +L + N F + G
Sbjct: 212 GINPETGHEQM---SNLNFTQGIAQALWHKKLFHIDLNGQHGPKFDQDLVFGHGDLLNAF 268
Query: 108 VLGVLLE 114
L LLE
Sbjct: 269 SLVDLLE 275
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 26.2 bits (57), Expect = 3.7
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 37 LGERVLQLTGGPLHHKYRLEQFHCHWG------CVSNKGSEHTVDGKAYAGELHLVHW 88
+R+ +L+G HH F V K K E+ L +
Sbjct: 43 QIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYPQKEVALEEY 100
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 25.2 bits (56), Expect = 6.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 54 RLEQFHCHWGCVSNKGSEHTVD 75
L+ V+NK ++H
Sbjct: 125 ALKAQGYILAVVTNKPTKHVQP 146
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase,
structural genomics, protein structure initiative; 1.80A
{Bacteroides thetaiotaomicron}
Length = 231
Score = 24.8 bits (53), Expect = 9.1
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 4/57 (7%)
Query: 18 CSPCDERGKVVNNYRPPLPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTV 74
S + G + L+ G Y L F W N+
Sbjct: 165 VSDTQSFASYPGQQVSIINFGAKGLKAEGL----FYPLSDFTNWWQGTLNEAIADEF 217
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A
{Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A
1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A
1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Length = 394
Score = 24.8 bits (53), Expect = 9.1
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 52 KYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGE----AAGQPDGLA 107
E H + H + +A +L + N + + + G
Sbjct: 212 GLNPETGHEQM---AGLNFTHGIAQALWAEKLFHIDLNGQRGIKYDQDLVFGHGDLTSAF 268
Query: 108 VLGVLLE 114
LLE
Sbjct: 269 FTVDLLE 275
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.442
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,942,667
Number of extensions: 104709
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 48
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)