RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy81
(120 letters)
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 94.5 bits (234), Expect = 1e-25
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 43 QLTGGPLHHKYRLEQFHCHWGCV-SNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 101
L G L KY Q H HWG S +GSEH ++ +A A ELH+VH++S YS+ EAA
Sbjct: 74 TLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQ 133
Query: 102 QPDGLAVLGVLLEV 115
+P GLAVLG+L+EV
Sbjct: 134 KPQGLAVLGILIEV 147
Score = 29.8 bits (66), Expect = 0.057
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L+ + S E D +V NYR P PL +R
Sbjct: 222 LEKLQETLSSTEE--------DPSEPLVQNYRVPQPLNQRT 254
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 92.2 bits (228), Expect = 1e-24
Identities = 44/72 (61%), Positives = 52/72 (72%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQP 103
L GGP YRL QFH HWG + GSEHTVDG Y+ ELH+ HWNS KYS+ EAA +
Sbjct: 77 LKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKA 136
Query: 104 DGLAVLGVLLEV 115
DGLAV+GVL++V
Sbjct: 137 DGLAVIGVLMKV 148
Score = 31.4 bits (70), Expect = 0.016
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQ 43
L FRSL S EG + +N RP PL R ++
Sbjct: 221 LAQFRSLLSNVEGDNAVP--------MQHNNRPTQPLKGRTVR 255
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 90.7 bits (224), Expect = 5e-24
Identities = 47/72 (65%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQP 103
L GGPL YRL QFH HWG + GSEHTVDG YA ELHLVHWN KY+TFGEA QP
Sbjct: 78 LRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN-PKYNTFGEALKQP 136
Query: 104 DGLAVLGVLLEV 115
DG+AV+G+ L++
Sbjct: 137 DGIAVVGIFLKI 148
Score = 30.6 bits (68), Expect = 0.030
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQ 43
+ RSL + E + +V N+RPP P+ RV++
Sbjct: 221 MAKLRSLFASAEN--------EPPVPLVGNWRPPQPIKGRVVR 255
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 89.5 bits (221), Expect = 9e-24
Identities = 40/75 (53%), Positives = 50/75 (66%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQP 103
++GGPL + YRL+QFH HWG GSEH VDG Y ELHLVHWNS KY +A+
Sbjct: 55 ISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGE 114
Query: 104 DGLAVLGVLLEVLEK 118
+GLAV+GV L++
Sbjct: 115 NGLAVIGVFLKLGAH 129
Score = 32.1 bits (72), Expect = 0.010
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQ 43
L FR+L G +E +VNNYRP PL +R L+
Sbjct: 199 LSMFRTLLFSGRG--------EEEDVMVNNYRPLQPLRDRKLR 233
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 88.8 bits (219), Expect = 2e-23
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSD-KYSTFGEAAGQ 102
++GG L Y+ +Q H HW + KGSEH++DG+ +A E+H+VH EA
Sbjct: 78 ISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDP 137
Query: 103 PDGLAVLGVLLEV 115
D +AVL L+E
Sbjct: 138 EDEIAVLAFLVEA 150
Score = 28.7 bits (63), Expect = 0.15
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
+ AF ++ S + +N RP LG+R
Sbjct: 227 ILAFSQKLYYDKEQTVS---------MKDNVRPLQQLGQRT 258
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 87.6 bits (216), Expect = 5e-23
Identities = 50/93 (53%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 26 KVVNNYRPP---LPLGERVLQLTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGE 82
+++NN + L GGPL YRL QFH HWG + +GSEHTVD K YA E
Sbjct: 57 RILNNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAE 116
Query: 83 LHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLEV 115
LHLVHWN KY FG+A QPDGLAVLG+ L+V
Sbjct: 117 LHLVHWN-TKYGDFGKAVQQPDGLAVLGIFLKV 148
Score = 30.6 bits (68), Expect = 0.038
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERVLQ 43
+ FR L EG + +V+N+RP PL R ++
Sbjct: 221 VLKFRKLNFNGEG--------EPEELMVDNWRPAQPLKNRQIK 255
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 84.5 bits (208), Expect = 1e-21
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 43 QLTGGPLHHKYRLEQFHCHWG-CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 101
+ L +Y Q H HWG GSEHTV G+ +A ELH+VH+NSD Y A+
Sbjct: 73 DMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASN 132
Query: 102 QPDGLAVLGVLLEV 115
+ +GLAVL VL+E+
Sbjct: 133 KSEGLAVLAVLIEM 146
Score = 30.2 bits (67), Expect = 0.049
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
L A + S +++NN+R ER+
Sbjct: 220 LLALETALYCTHMDDPS------PREMINNFRQVQKFDERL 254
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 73.7 bits (180), Expect = 1e-17
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 44 LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQP 103
+ GG L +Y Q H HW ++ GSEH++DG+ +A E+H+VH
Sbjct: 78 IIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSSK-----EDSK 132
Query: 104 DGLAVLGVLLEV 115
D AVL ++EV
Sbjct: 133 DKFAVLAFMIEV 144
Score = 29.5 bits (65), Expect = 0.083
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 1 LKAFRSLKSIEEGTGCSCSPCDERGKVVNNYRPPLPLGERV 41
F +E + +N RP PLG+R
Sbjct: 221 FLEFSKNLYYDEDQKLNM---------KDNVRPLQPLGKRQ 252
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 49.5 bits (117), Expect = 6e-09
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 50 HHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVL 109
Y L+QFH H SE+ + G+ + E H VH + +K VL
Sbjct: 80 GRTYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENKQP------------LVL 121
Query: 110 GVLLEV 115
VL E
Sbjct: 122 AVLYEA 127
Score = 24.8 bits (53), Expect = 2.8
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 29 NNYRPPLPLGERV 41
N RP PL RV
Sbjct: 208 ENNRPVQPLNARV 220
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 26.0 bits (57), Expect = 1.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 3 AFRSLKSIEEGTGCSCSPCDERGKVVNNYR 32
+ +S+KS EE S +E +V+ + +
Sbjct: 36 SLKSIKSQEEKLRKEKSLNNEFIQVIEDIK 65
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains
{Human (Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 23.4 bits (50), Expect = 7.9
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 58 FHC-HWGCVSNKGSEHTVDGKAYAGELHLVHWNSD 91
FH N + + + +L W+S+
Sbjct: 4 FHVIWIASFYNHSWKQNL-VSGWLSDLQTHTWDSN 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.442
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,719
Number of extensions: 20296
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 23
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)