BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy810
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
+ H S P +P +EG + F G +H+HD+R F+D+ VLLVG S DI K
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
+S + + ++ ++ ++P++ R+ ++ F D +S D+II CTG
Sbjct: 222 KKLISCYRTAPXGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 43/146 (29%)
Query: 92 PSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH-- 149
P Y+G + F G+Q+HS Y P PF V ++G G SG I ++ VA+ +++ H
Sbjct: 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196
Query: 150 ---------------ISVAFKHQ------------IGDSVVQKPDI-------------- 168
+ +K Q GD V+ P +
Sbjct: 197 AFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPP 256
Query: 169 KRLLQDSVVFQDDTSHPFDSIIYCTG 194
R + + D T FD++I+CTG
Sbjct: 257 ARFSPTGMQWADGTERAFDAVIWCTG 282
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 80 SLPSSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAM 135
S+ + H VP IP+ +G D + G +HS +R P+ F ++VL+VG S D+
Sbjct: 172 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 231
Query: 136 DIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRL--------LQDSVVFQDDTSHPFD 187
+ VAK+ + +S+ Q P+I + L+ V + D
Sbjct: 232 HLTPVAKHPIYQSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSN-----ID 284
Query: 188 SIIYCTGAYKYSYKLTFLATFSISMAMSTPDG 219
+IYCTG Y YS LA DG
Sbjct: 285 RVIYCTG-YLYSVPFPSLAKLKSPETKLIDDG 315
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 80 SLPSSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAM 135
S+ + H VP IP+ +G D + G +HS +R P+ F ++VL+VG S D+
Sbjct: 170 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 229
Query: 136 DIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRL--------LQDSVVFQDDTSHPFD 187
+ VAK+ + +S+ Q P+I + L+ V + D
Sbjct: 230 HLTPVAKHPIYQSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSN-----ID 282
Query: 188 SIIYCTGAYKYSYKLTFLATFSISMAMSTPDG 219
+IYCTG Y YS LA DG
Sbjct: 283 RVIYCTG-YLYSVPFPSLAKLKSPETKLIDDG 313
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 81 LPSSHNSVPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139
+ S SVP +P++ G F G H+ ++ P F Q V ++G G SG+ ++ I K
Sbjct: 148 MASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK 207
Query: 140 VAKNVFL 146
A +F+
Sbjct: 208 QAAELFV 214
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 81 LPSSHNSVPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139
+ S SVP +P++ G F G H+ ++ P F Q V ++G G SG+ ++ I K
Sbjct: 148 MASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK 207
Query: 140 VAKNVFL 146
A +F+
Sbjct: 208 QAAELFV 214
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 81 LPSSHNSVPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139
+ S SVP +P++ G F G H+ ++ P F Q V ++G G SG+ ++ I K
Sbjct: 148 MASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK 207
Query: 140 VAKNVFL 146
A +F+
Sbjct: 208 QAAELFV 214
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 81 LPSSHNSVPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139
+ S SVP +P++ G F G H+ ++ P F Q V ++G G SG+ ++ I K
Sbjct: 148 MASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK 207
Query: 140 VAKNVFL 146
A +F+
Sbjct: 208 QAAELFV 214
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|A Chain A, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
Length = 490
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 30 QPTNFISI-AFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV 88
QP FI+ AFI I F W I S L F ++ ITL Q++ N V
Sbjct: 363 QPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKV 422
Query: 89 PNIPSYEGADLF 100
I + GA +
Sbjct: 423 IPIAAVTGASVL 434
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 68 NEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-----RVPDP--FRDQ 119
NEE+ T + + + P S + +P+I +G D F+G HS + P F +
Sbjct: 130 NEEVVTCRFLISATGPLSASRMPDI---KGIDSFKGESFHSSRWPTDAEGAPKGVDFTGK 186
Query: 120 NVLLVGFGPSGVDIAMDIEKVAKNVFL 146
V ++G G +GV I + AK +++
Sbjct: 187 RVGVIGTGATGVQIIPIAAETAKELYV 213
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 118 DQNVLLVGFGPSGVDIAMDIEKVAKNV 144
D++V++VG GPSG+ A +++K +V
Sbjct: 7 DRDVVIVGAGPSGLTAARELKKAGLSV 33
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH-NSVPNIPSYEGAD 98
IP + I AEI P+ H N +LH N ++ +P SH ++P Y G
Sbjct: 12 IPPLNIVAAYDGAEI-----PSTNKHLKNNFNSLH-NQMRKMPVSHFKEALDVPDYSGMR 65
Query: 99 ------LFRGLQMHSHDYRV 112
+ +G Q+++H Y V
Sbjct: 66 QSGFFAMSQGFQLNNHGYDV 85
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
F+ + V ++G G SGV+ A+D+ + ++V L
Sbjct: 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL 383
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH-NSVPNIPSYEGAD 98
IP + I AEI P+ H N +LH N ++ +P SH ++P Y G
Sbjct: 12 IPPLNIVAAYDGAEI-----PSTNKHLKNNFNSLH-NQMRKMPVSHFKEALDVPDYSGMR 65
Query: 99 ------LFRGLQMHSHDYRV 112
+ +G Q+++H Y V
Sbjct: 66 QSGFFAMSQGFQLNNHGYDV 85
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 68 NEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD---PFRDQNVLLV 124
+E++ + ++ + P S+ N P+++G D F G +H+ R P F + V ++
Sbjct: 143 GDEVSARFLVVAAGPLSN---ANTPAFDGLDRFTGDIVHTA--RWPHDGVDFTGKRVGVI 197
Query: 125 GFGPSGVDIAMDIEKVAKNVFL 146
G G SG+ I + A+ +F+
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFV 219
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 68 NEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD---PFRDQNVLLV 124
+E++ + ++ + P S+ N P+++G D F G +H+ R P F + V ++
Sbjct: 143 GDEVSARFLVVAAGPLSN---ANTPAFDGLDRFTGDIVHTA--RWPHDGVDFTGKRVGVI 197
Query: 125 GFGPSGVDIAMDIEKVAKNVFL 146
G G SG+ I + A+ +F+
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFV 219
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 68 NEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD---PFRDQNVLLV 124
+E++ + ++ + P S+ N P+++G D F G +H+ R P F + V ++
Sbjct: 143 GDEVSARFLVVAAGPLSN---ANTPAFDGLDRFTGDIVHTA--RWPHDGVDFTGKRVGVI 197
Query: 125 GFGPSGVDIAMDIEKVAKNVFL 146
G G SG+ I + A+ +F+
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFV 219
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
F+ + V ++G G SGV+ A+D+ + ++V L
Sbjct: 142 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,185,282
Number of Sequences: 62578
Number of extensions: 298767
Number of successful extensions: 705
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 35
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)