Query psy810
Match_columns 227
No_of_seqs 120 out of 1566
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 18:27:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 99.9 1.1E-24 2.3E-29 192.7 16.8 166 44-215 129-304 (461)
2 PF00743 FMO-like: Flavin-bind 99.9 5.2E-25 1.1E-29 197.3 13.2 171 42-215 100-347 (531)
3 COG1249 Lpd Pyruvate/2-oxoglut 99.9 7.9E-23 1.7E-27 179.3 9.2 202 3-215 44-289 (454)
4 PRK07846 mycothione reductase; 99.9 2E-21 4.4E-26 171.9 11.8 146 62-215 115-279 (451)
5 PLN02507 glutathione reductase 99.9 4.8E-21 1E-25 171.4 13.3 149 62-224 152-323 (499)
6 COG0492 TrxB Thioredoxin reduc 99.8 4.7E-20 1E-24 154.6 14.2 153 49-213 81-250 (305)
7 TIGR03452 mycothione_red mycot 99.8 9E-21 2E-25 167.9 10.1 145 62-215 118-282 (452)
8 PRK06116 glutathione reductase 99.8 1.8E-20 3.8E-25 166.1 10.7 140 64-215 121-282 (450)
9 TIGR01424 gluta_reduc_2 glutat 99.8 2.1E-20 4.6E-25 165.4 10.7 141 63-215 119-280 (446)
10 TIGR01423 trypano_reduc trypan 99.8 1.5E-20 3.2E-25 167.6 9.1 134 71-215 147-305 (486)
11 TIGR01421 gluta_reduc_1 glutat 99.8 6.5E-20 1.4E-24 162.4 11.8 139 65-215 120-282 (450)
12 KOG1399|consensus 99.8 2.4E-19 5.2E-24 156.8 14.1 166 40-210 104-279 (448)
13 PRK06370 mercuric reductase; V 99.8 8.9E-20 1.9E-24 162.1 11.6 142 64-214 123-287 (463)
14 PLN02546 glutathione reductase 99.8 5.1E-20 1.1E-24 166.2 10.0 139 65-215 207-367 (558)
15 PRK07845 flavoprotein disulfid 99.8 1.2E-19 2.6E-24 161.3 11.4 146 62-215 124-291 (466)
16 TIGR02053 MerA mercuric reduct 99.8 1.2E-19 2.6E-24 161.2 10.6 143 64-214 116-282 (463)
17 PRK07251 pyridine nucleotide-d 99.8 1.4E-19 3E-24 159.9 10.6 199 3-214 44-269 (438)
18 PRK13512 coenzyme A disulfide 99.8 2.9E-19 6.3E-24 157.8 12.5 161 41-215 71-256 (438)
19 PRK08010 pyridine nucleotide-d 99.8 6.5E-19 1.4E-23 155.7 14.6 146 62-214 105-270 (441)
20 PRK14989 nitrite reductase sub 99.8 2.8E-19 6.1E-24 168.0 12.9 162 41-214 72-259 (847)
21 TIGR01292 TRX_reduct thioredox 99.8 1E-18 2.2E-23 146.2 14.0 162 42-213 71-250 (300)
22 PRK14694 putative mercuric red 99.8 6.8E-19 1.5E-23 156.7 12.2 143 62-213 125-288 (468)
23 PTZ00058 glutathione reductase 99.8 7.5E-19 1.6E-23 158.7 12.3 129 69-209 196-345 (561)
24 TIGR02374 nitri_red_nirB nitri 99.8 9.9E-19 2.1E-23 163.9 12.8 161 41-213 67-251 (785)
25 PRK15317 alkyl hydroperoxide r 99.8 3.2E-18 7E-23 154.0 15.6 165 41-214 279-462 (517)
26 PRK05249 soluble pyridine nucl 99.8 6.4E-19 1.4E-23 156.5 10.5 144 62-214 122-288 (461)
27 PRK10262 thioredoxin reductase 99.8 4.6E-18 1E-22 144.3 14.7 153 50-213 84-260 (321)
28 TIGR03385 CoA_CoA_reduc CoA-di 99.8 2.3E-18 5E-23 151.6 13.1 164 41-214 57-247 (427)
29 TIGR03140 AhpF alkyl hydropero 99.8 4.1E-18 8.8E-23 153.3 14.8 165 41-214 280-463 (515)
30 KOG1336|consensus 99.8 2.9E-18 6.3E-23 147.4 13.0 199 10-225 100-334 (478)
31 PRK13748 putative mercuric red 99.8 2.7E-18 5.9E-23 156.0 13.4 145 62-215 217-382 (561)
32 PRK04965 NADH:flavorubredoxin 99.8 1.8E-18 3.8E-23 150.0 11.4 159 41-214 71-253 (377)
33 TIGR01438 TGR thioredoxin and 99.8 2.5E-18 5.4E-23 153.5 12.5 132 72-214 140-295 (484)
34 PRK14727 putative mercuric red 99.8 1.8E-18 4E-23 154.3 11.6 144 62-214 135-299 (479)
35 PTZ00052 thioredoxin reductase 99.8 1.5E-18 3.2E-23 155.5 10.5 133 71-214 140-294 (499)
36 PRK06467 dihydrolipoamide dehy 99.8 1.8E-18 3.8E-23 154.1 10.8 145 62-215 121-291 (471)
37 PRK09754 phenylpropionate diox 99.8 5.2E-18 1.1E-22 148.0 12.5 161 41-213 71-254 (396)
38 PTZ00153 lipoamide dehydrogena 99.8 1.3E-18 2.9E-23 159.2 8.5 136 70-213 269-442 (659)
39 PRK06292 dihydrolipoamide dehy 99.8 2.2E-18 4.7E-23 153.1 9.2 142 64-214 120-284 (460)
40 PRK06416 dihydrolipoamide dehy 99.8 5.5E-18 1.2E-22 150.6 11.8 142 62-213 120-287 (462)
41 PRK06912 acoL dihydrolipoamide 99.8 3.5E-18 7.5E-23 151.8 10.5 145 62-214 118-284 (458)
42 KOG0405|consensus 99.8 3.4E-18 7.3E-23 141.6 9.5 204 3-215 60-304 (478)
43 TIGR01350 lipoamide_DH dihydro 99.8 1.5E-17 3.3E-22 147.7 13.9 145 62-215 117-286 (461)
44 PRK07818 dihydrolipoamide dehy 99.8 1.1E-17 2.5E-22 148.8 12.9 143 63-214 121-289 (466)
45 PRK06115 dihydrolipoamide dehy 99.7 1.5E-17 3.3E-22 147.9 12.7 143 63-214 122-292 (466)
46 COG2072 TrkA Predicted flavopr 99.7 8.5E-18 1.9E-22 148.3 10.8 134 17-153 75-210 (443)
47 COG1252 Ndh NADH dehydrogenase 99.7 1.1E-17 2.4E-22 144.0 10.8 162 49-225 78-284 (405)
48 KOG0404|consensus 99.7 3.7E-18 8E-23 133.7 6.9 156 49-215 90-269 (322)
49 PRK09564 coenzyme A disulfide 99.7 9.5E-18 2.1E-22 148.3 10.3 164 41-214 69-260 (444)
50 PTZ00318 NADH dehydrogenase-li 99.7 8.1E-18 1.7E-22 148.0 9.6 155 47-214 80-293 (424)
51 PRK06327 dihydrolipoamide dehy 99.7 2.4E-17 5.3E-22 147.0 12.1 145 62-214 130-300 (475)
52 PRK05976 dihydrolipoamide dehy 99.7 6.6E-17 1.4E-21 144.1 14.1 134 63-205 128-286 (472)
53 PF13738 Pyr_redox_3: Pyridine 99.7 4.1E-17 8.9E-22 129.3 10.3 107 40-151 94-200 (203)
54 KOG1335|consensus 99.7 8.9E-17 1.9E-21 134.7 11.0 213 3-225 79-338 (506)
55 COG3634 AhpF Alkyl hydroperoxi 99.7 2.5E-16 5.5E-21 130.6 10.6 167 42-215 280-466 (520)
56 TIGR03169 Nterm_to_SelD pyridi 99.7 3.2E-16 6.9E-21 135.2 10.5 159 42-214 68-256 (364)
57 TIGR03143 AhpF_homolog putativ 99.7 1.2E-15 2.5E-20 138.5 14.2 160 43-214 75-259 (555)
58 COG1251 NirB NAD(P)H-nitrite r 99.6 5.8E-16 1.2E-20 139.1 8.0 164 40-215 71-258 (793)
59 PF13434 K_oxygenase: L-lysine 99.5 2.1E-14 4.5E-19 122.7 7.3 106 44-151 111-225 (341)
60 KOG4716|consensus 99.5 4.9E-14 1.1E-18 116.8 9.0 143 71-223 157-323 (503)
61 TIGR01316 gltA glutamate synth 99.5 2E-13 4.3E-18 121.0 11.8 135 74-214 217-401 (449)
62 PRK12770 putative glutamate sy 99.5 2.8E-13 6.1E-18 116.5 12.1 166 42-214 82-301 (352)
63 PRK12831 putative oxidoreducta 99.5 4E-13 8.6E-18 119.5 10.9 136 73-214 226-411 (464)
64 PRK09853 putative selenate red 99.4 6.7E-13 1.5E-17 125.6 11.5 153 42-214 603-793 (1019)
65 PRK11749 dihydropyrimidine deh 99.4 8.9E-13 1.9E-17 117.2 10.2 135 74-214 224-402 (457)
66 PRK12778 putative bifunctional 99.4 1.7E-12 3.8E-17 121.8 10.5 137 72-214 514-701 (752)
67 PRK12814 putative NADPH-depend 99.3 1.5E-11 3.3E-16 113.6 12.4 134 75-214 278-451 (652)
68 COG3486 IucD Lysine/ornithine 99.3 8.9E-12 1.9E-16 105.9 9.4 104 43-151 112-224 (436)
69 PRK12779 putative bifunctional 99.3 8.8E-12 1.9E-16 118.9 10.0 143 66-214 383-577 (944)
70 KOG1346|consensus 99.3 1.6E-11 3.4E-16 104.5 8.0 164 42-215 271-464 (659)
71 TIGR01372 soxA sarcosine oxida 99.3 3.4E-11 7.3E-16 115.9 11.3 134 73-213 272-424 (985)
72 TIGR03315 Se_ygfK putative sel 99.2 2.6E-11 5.6E-16 115.3 9.5 135 73-214 619-790 (1012)
73 PRK12810 gltD glutamate syntha 99.2 1.4E-10 3E-15 103.6 13.5 135 74-214 227-415 (471)
74 KOG2495|consensus 99.2 2.3E-11 5.1E-16 103.7 7.8 124 72-199 155-330 (491)
75 COG0446 HcaD Uncharacterized N 99.2 3.2E-11 6.9E-16 104.9 8.9 155 40-209 65-246 (415)
76 PRK12775 putative trifunctiona 99.2 1.7E-10 3.7E-15 111.0 12.8 135 74-214 516-701 (1006)
77 TIGR01318 gltD_gamma_fam gluta 99.2 5E-10 1.1E-14 99.9 12.9 136 74-214 225-413 (467)
78 TIGR01317 GOGAT_sm_gam glutama 99.1 7.2E-10 1.6E-14 99.3 13.4 135 73-214 226-429 (485)
79 PRK12769 putative oxidoreducta 99.1 1.8E-09 3.9E-14 100.1 14.3 136 74-214 411-599 (654)
80 PRK13984 putative oxidoreducta 99.0 8.5E-10 1.8E-14 101.4 9.3 128 74-207 367-545 (604)
81 PRK12809 putative oxidoreducta 98.9 1.4E-08 3.1E-13 93.9 13.6 135 74-214 394-582 (639)
82 PRK12771 putative glutamate sy 98.8 2E-08 4.3E-13 91.7 10.6 131 75-211 222-392 (564)
83 PLN02852 ferredoxin-NADP+ redu 98.7 1.5E-07 3.3E-12 84.0 11.4 76 74-152 113-221 (491)
84 PF00070 Pyr_redox: Pyridine n 98.7 8.3E-08 1.8E-12 64.7 6.3 61 120-181 1-80 (80)
85 PRK06567 putative bifunctional 98.6 2.3E-07 5E-12 87.9 10.1 62 73-137 495-569 (1028)
86 TIGR01292 TRX_reduct thioredox 98.3 2.5E-06 5.5E-11 71.1 8.8 83 120-206 2-118 (300)
87 PRK09754 phenylpropionate diox 98.2 5E-06 1.1E-10 72.7 8.8 82 118-200 3-114 (396)
88 PRK09564 coenzyme A disulfide 98.2 1.1E-05 2.4E-10 71.5 9.5 85 119-206 1-121 (444)
89 COG1252 Ndh NADH dehydrogenase 98.1 1.4E-05 3.1E-10 69.5 8.0 82 118-200 3-113 (405)
90 PTZ00318 NADH dehydrogenase-li 98.0 1.9E-05 4E-10 69.8 8.2 83 117-200 9-127 (424)
91 TIGR03169 Nterm_to_SelD pyridi 98.0 1.7E-05 3.7E-10 68.4 7.4 84 120-206 1-113 (364)
92 PRK13512 coenzyme A disulfide 98.0 3.6E-05 7.8E-10 68.3 9.2 81 119-200 2-119 (438)
93 PRK09897 hypothetical protein; 98.0 0.00012 2.7E-09 66.3 11.8 87 43-140 124-213 (534)
94 PRK04965 NADH:flavorubredoxin 97.9 6.3E-05 1.4E-09 65.3 9.0 85 119-206 3-117 (377)
95 PRK14989 nitrite reductase sub 97.9 6.9E-05 1.5E-09 71.5 9.8 86 118-206 3-119 (847)
96 TIGR02374 nitri_red_nirB nitri 97.8 8.1E-05 1.7E-09 70.7 9.3 83 121-206 1-114 (785)
97 KOG2755|consensus 97.8 3.8E-05 8.3E-10 62.4 5.5 88 52-149 71-163 (334)
98 PRK12779 putative bifunctional 97.8 4.4E-05 9.5E-10 73.6 6.6 34 117-150 305-338 (944)
99 COG2081 Predicted flavoprotein 97.7 0.00012 2.7E-09 62.9 7.7 32 119-150 4-35 (408)
100 PF01134 GIDA: Glucose inhibit 97.7 0.0002 4.4E-09 62.2 8.5 30 120-149 1-30 (392)
101 PF13738 Pyr_redox_3: Pyridine 97.7 8.3E-05 1.8E-09 58.5 5.7 78 122-200 1-142 (203)
102 PF07992 Pyr_redox_2: Pyridine 97.7 3.3E-05 7.2E-10 60.6 3.2 85 120-207 1-129 (201)
103 TIGR03140 AhpF alkyl hydropero 97.7 0.00031 6.7E-09 63.7 9.5 82 118-200 212-325 (515)
104 PRK09853 putative selenate red 97.6 0.00014 3.1E-09 69.9 7.2 35 117-151 538-572 (1019)
105 PRK12770 putative glutamate sy 97.6 0.00017 3.7E-09 62.1 6.3 35 117-151 17-51 (352)
106 PRK07251 pyridine nucleotide-d 97.6 0.00036 7.8E-09 61.9 8.4 32 120-151 5-36 (438)
107 PRK15317 alkyl hydroperoxide r 97.5 0.00049 1.1E-08 62.4 9.1 82 118-200 211-324 (517)
108 TIGR01316 gltA glutamate synth 97.5 0.00021 4.5E-09 63.7 5.8 35 117-151 132-166 (449)
109 PRK06116 glutathione reductase 97.5 0.00049 1.1E-08 61.2 7.8 31 120-150 6-36 (450)
110 PTZ00188 adrenodoxin reductase 97.5 0.00044 9.6E-09 61.7 7.4 36 117-152 196-252 (506)
111 PRK11749 dihydropyrimidine deh 97.4 0.00025 5.4E-09 63.3 6.0 36 116-151 138-173 (457)
112 PRK01438 murD UDP-N-acetylmura 97.4 0.00012 2.7E-09 65.6 3.9 85 116-212 14-105 (480)
113 PF07992 Pyr_redox_2: Pyridine 97.4 4.1E-05 8.9E-10 60.1 0.7 82 41-125 71-159 (201)
114 PRK10262 thioredoxin reductase 97.4 0.00051 1.1E-08 58.3 7.4 33 117-149 5-37 (321)
115 PRK06847 hypothetical protein; 97.4 0.00084 1.8E-08 58.0 8.8 34 118-151 4-37 (375)
116 COG4529 Uncharacterized protei 97.4 0.0011 2.5E-08 58.3 9.5 99 48-151 126-231 (474)
117 PRK12778 putative bifunctional 97.4 0.00026 5.6E-09 67.0 5.9 34 117-150 430-463 (752)
118 TIGR01424 gluta_reduc_2 glutat 97.4 0.00084 1.8E-08 59.7 8.8 30 120-149 4-33 (446)
119 PRK08010 pyridine nucleotide-d 97.4 0.00082 1.8E-08 59.6 8.6 31 120-150 5-35 (441)
120 PF03486 HI0933_like: HI0933-l 97.4 0.00025 5.5E-09 62.3 5.0 32 120-151 2-33 (409)
121 PRK12831 putative oxidoreducta 97.4 0.00029 6.3E-09 63.0 5.4 35 116-150 138-172 (464)
122 PLN02852 ferredoxin-NADP+ redu 97.3 0.00033 7.1E-09 62.9 5.5 35 117-151 25-61 (491)
123 TIGR01789 lycopene_cycl lycope 97.3 0.0011 2.4E-08 57.5 8.6 78 121-199 2-139 (370)
124 PRK12810 gltD glutamate syntha 97.3 0.0003 6.6E-09 63.0 5.2 35 117-151 142-176 (471)
125 PRK12769 putative oxidoreducta 97.3 0.00043 9.4E-09 64.5 6.3 34 117-150 326-359 (654)
126 PRK06567 putative bifunctional 97.3 0.00045 9.7E-09 66.2 6.0 35 116-150 381-415 (1028)
127 PRK07236 hypothetical protein; 97.3 0.0015 3.2E-08 56.9 8.8 34 118-151 6-39 (386)
128 TIGR03315 Se_ygfK putative sel 97.3 0.00053 1.2E-08 66.3 6.5 35 117-151 536-570 (1012)
129 KOG3851|consensus 97.3 0.00069 1.5E-08 56.8 6.1 93 119-214 40-159 (446)
130 TIGR01318 gltD_gamma_fam gluta 97.3 0.00041 8.9E-09 62.1 5.2 35 117-151 140-174 (467)
131 PRK06370 mercuric reductase; V 97.2 0.0011 2.4E-08 59.2 7.5 31 120-150 7-37 (463)
132 KOG1399|consensus 97.2 0.002 4.4E-08 57.1 8.9 34 118-151 6-39 (448)
133 PRK12775 putative trifunctiona 97.2 0.00064 1.4E-08 66.2 6.3 34 117-150 429-462 (1006)
134 KOG1800|consensus 97.2 0.00082 1.8E-08 57.5 6.1 77 73-152 106-215 (468)
135 TIGR01421 gluta_reduc_1 glutat 97.2 0.0017 3.6E-08 57.9 8.3 31 120-150 4-34 (450)
136 PRK06753 hypothetical protein; 97.2 0.0017 3.8E-08 56.0 8.2 32 120-151 2-33 (373)
137 PRK05249 soluble pyridine nucl 97.2 0.0018 3.8E-08 57.8 8.4 31 120-150 7-37 (461)
138 COG2072 TrkA Predicted flavopr 97.2 0.0024 5.3E-08 56.8 8.9 33 119-151 9-42 (443)
139 PF00743 FMO-like: Flavin-bind 97.1 0.00095 2E-08 60.7 6.2 33 119-151 2-34 (531)
140 TIGR01317 GOGAT_sm_gam glutama 97.1 0.00061 1.3E-08 61.3 4.9 35 117-151 142-176 (485)
141 PRK14694 putative mercuric red 97.1 0.0037 7.9E-08 56.0 9.0 31 120-150 8-38 (468)
142 PRK12809 putative oxidoreducta 97.0 0.00079 1.7E-08 62.6 4.8 35 117-151 309-343 (639)
143 KOG0399|consensus 97.0 0.002 4.3E-08 62.1 7.2 73 72-145 1867-1952(2142)
144 COG0493 GltD NADPH-dependent g 97.0 0.0012 2.5E-08 58.9 5.6 85 115-200 120-223 (457)
145 PRK06467 dihydrolipoamide dehy 97.0 0.0024 5.3E-08 57.2 7.8 31 120-150 6-36 (471)
146 PRK07845 flavoprotein disulfid 97.0 0.0019 4.1E-08 57.8 7.0 32 119-150 2-33 (466)
147 PRK06115 dihydrolipoamide dehy 97.0 0.0029 6.4E-08 56.6 7.9 30 120-149 5-34 (466)
148 PRK07588 hypothetical protein; 97.0 0.0037 7.9E-08 54.5 8.2 32 120-151 2-33 (391)
149 PRK05868 hypothetical protein; 96.9 0.0042 9.1E-08 53.9 8.3 33 119-151 2-34 (372)
150 PLN02546 glutathione reductase 96.9 0.0037 8E-08 57.2 8.1 30 120-149 81-110 (558)
151 PRK08163 salicylate hydroxylas 96.9 0.0053 1.1E-07 53.5 8.8 34 118-151 4-37 (396)
152 PRK12814 putative NADPH-depend 96.9 0.00064 1.4E-08 63.4 3.1 35 117-151 192-226 (652)
153 PTZ00058 glutathione reductase 96.9 0.0061 1.3E-07 55.8 9.3 31 120-150 50-80 (561)
154 KOG1336|consensus 96.9 0.0071 1.5E-07 53.2 8.9 90 116-211 72-190 (478)
155 PRK06912 acoL dihydrolipoamide 96.9 0.0064 1.4E-07 54.3 9.0 31 120-150 2-32 (458)
156 PRK09126 hypothetical protein; 96.9 0.0055 1.2E-07 53.3 8.3 32 120-151 5-36 (392)
157 TIGR03143 AhpF_homolog putativ 96.9 0.0048 1E-07 56.5 8.2 31 120-150 6-36 (555)
158 PLN02463 lycopene beta cyclase 96.9 0.0052 1.1E-07 54.8 8.1 33 119-151 29-61 (447)
159 COG0493 GltD NADPH-dependent g 96.8 0.0042 9.2E-08 55.3 7.4 74 73-149 206-294 (457)
160 PLN02507 glutathione reductase 96.8 0.007 1.5E-07 54.7 8.8 30 120-149 27-56 (499)
161 PRK14727 putative mercuric red 96.8 0.0071 1.5E-07 54.3 8.8 32 119-150 17-48 (479)
162 KOG0399|consensus 96.8 0.0011 2.3E-08 63.8 3.4 37 115-151 1782-1818(2142)
163 COG0445 GidA Flavin-dependent 96.8 0.0026 5.6E-08 57.0 5.5 32 120-151 6-37 (621)
164 PRK05976 dihydrolipoamide dehy 96.8 0.0057 1.2E-07 54.8 7.8 31 120-150 6-36 (472)
165 PRK08773 2-octaprenyl-3-methyl 96.8 0.0075 1.6E-07 52.5 8.4 32 119-150 7-38 (392)
166 PRK13984 putative oxidoreducta 96.7 0.0019 4.2E-08 59.6 4.8 35 117-151 282-316 (604)
167 PF13241 NAD_binding_7: Putati 96.7 0.0018 3.9E-08 45.6 3.4 36 115-150 4-39 (103)
168 TIGR02053 MerA mercuric reduct 96.7 0.0074 1.6E-07 53.9 8.1 31 120-150 2-32 (463)
169 TIGR03219 salicylate_mono sali 96.7 0.009 2E-07 52.5 8.2 32 120-151 2-34 (414)
170 PRK07333 2-octaprenyl-6-methox 96.7 0.0093 2E-07 52.0 8.2 32 120-151 3-36 (403)
171 COG0654 UbiH 2-polyprenyl-6-me 96.6 0.0089 1.9E-07 52.1 7.9 32 119-150 3-34 (387)
172 COG0492 TrxB Thioredoxin reduc 96.6 0.011 2.4E-07 50.0 8.0 79 120-200 5-117 (305)
173 PF13450 NAD_binding_8: NAD(P) 96.6 0.0031 6.8E-08 40.9 3.7 29 123-151 1-29 (68)
174 PRK08849 2-octaprenyl-3-methyl 96.6 0.011 2.4E-07 51.4 8.3 31 120-150 5-35 (384)
175 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0046 1E-07 47.6 5.1 36 115-150 41-77 (168)
176 PRK08850 2-octaprenyl-6-methox 96.6 0.012 2.5E-07 51.6 8.3 32 119-150 5-36 (405)
177 PRK06834 hypothetical protein; 96.6 0.013 2.8E-07 52.8 8.8 33 119-151 4-36 (488)
178 KOG2495|consensus 96.6 0.0076 1.7E-07 52.5 6.7 35 117-151 54-88 (491)
179 PRK06416 dihydrolipoamide dehy 96.5 0.008 1.7E-07 53.7 7.2 31 120-150 6-36 (462)
180 PRK07045 putative monooxygenas 96.5 0.013 2.8E-07 50.9 8.4 33 119-151 6-38 (388)
181 TIGR01350 lipoamide_DH dihydro 96.5 0.0076 1.6E-07 53.7 6.8 30 120-149 3-32 (461)
182 PF05834 Lycopene_cycl: Lycope 96.5 0.013 2.7E-07 51.0 8.0 78 121-199 2-143 (374)
183 KOG2311|consensus 96.5 0.0092 2E-07 52.8 6.9 32 120-151 30-61 (679)
184 PRK06184 hypothetical protein; 96.5 0.014 2.9E-07 52.8 8.4 33 119-151 4-36 (502)
185 PRK12771 putative glutamate sy 96.5 0.0025 5.4E-08 58.4 3.7 35 116-150 135-169 (564)
186 PRK07818 dihydrolipoamide dehy 96.5 0.013 2.7E-07 52.5 7.9 31 120-150 6-36 (466)
187 PRK13748 putative mercuric red 96.5 0.02 4.3E-07 52.4 9.4 32 119-150 99-130 (561)
188 KOG2755|consensus 96.4 0.0042 9.1E-08 50.8 3.9 78 121-200 2-106 (334)
189 TIGR01438 TGR thioredoxin and 96.3 0.022 4.7E-07 51.3 8.8 30 120-149 4-33 (484)
190 PTZ00052 thioredoxin reductase 96.3 0.019 4.2E-07 51.9 8.3 30 120-149 7-36 (499)
191 PF13454 NAD_binding_9: FAD-NA 96.3 0.022 4.7E-07 43.2 7.3 29 122-150 1-34 (156)
192 PRK06719 precorrin-2 dehydroge 96.3 0.0062 1.4E-07 46.4 4.1 35 115-149 10-44 (157)
193 TIGR01423 trypano_reduc trypan 96.2 0.028 6.1E-07 50.7 8.8 30 120-149 5-35 (486)
194 COG2081 Predicted flavoprotein 96.2 0.011 2.4E-07 51.1 5.9 47 41-90 124-170 (408)
195 TIGR01372 soxA sarcosine oxida 96.2 0.018 3.9E-07 56.4 8.0 33 118-150 163-195 (985)
196 COG1251 NirB NAD(P)H-nitrite r 96.2 0.03 6.6E-07 52.0 8.8 82 118-200 3-115 (793)
197 PRK05335 tRNA (uracil-5-)-meth 96.1 0.0068 1.5E-07 53.4 4.1 33 119-151 3-35 (436)
198 PF02558 ApbA: Ketopantoate re 96.1 0.0031 6.8E-08 47.3 1.7 31 121-151 1-31 (151)
199 PRK06718 precorrin-2 dehydroge 96.1 0.0086 1.9E-07 47.6 4.2 35 115-149 7-41 (202)
200 TIGR01470 cysG_Nterm siroheme 96.1 0.0085 1.8E-07 47.7 4.1 34 116-149 7-40 (205)
201 PRK14175 bifunctional 5,10-met 96.0 0.014 2.9E-07 48.8 5.4 37 115-151 155-192 (286)
202 PLN02697 lycopene epsilon cycl 96.0 0.028 6E-07 51.2 7.8 32 119-150 109-140 (529)
203 TIGR00136 gidA glucose-inhibit 96.0 0.033 7.2E-07 51.3 8.1 31 120-150 2-32 (617)
204 PRK07846 mycothione reductase; 95.9 0.048 1E-06 48.7 8.6 29 120-150 3-31 (451)
205 TIGR00137 gid_trmFO tRNA:m(5)U 95.9 0.0091 2E-07 52.7 3.9 33 120-152 2-34 (433)
206 PTZ00188 adrenodoxin reductase 95.8 0.014 3E-07 52.4 4.7 36 117-152 38-74 (506)
207 PF03486 HI0933_like: HI0933-l 95.7 0.015 3.2E-07 51.3 4.5 49 40-90 121-169 (409)
208 KOG0404|consensus 95.7 0.057 1.2E-06 43.4 7.3 85 119-208 9-132 (322)
209 PRK05708 2-dehydropantoate 2-r 95.6 0.023 4.9E-07 48.1 5.3 35 119-153 3-37 (305)
210 PF01494 FAD_binding_3: FAD bi 95.5 0.019 4.1E-07 48.6 4.4 32 120-151 3-34 (356)
211 COG1249 Lpd Pyruvate/2-oxoglut 95.5 0.069 1.5E-06 47.7 7.9 31 120-150 6-36 (454)
212 COG4529 Uncharacterized protei 95.5 0.069 1.5E-06 47.4 7.7 32 119-150 2-36 (474)
213 PLN02172 flavin-containing mon 95.4 0.022 4.8E-07 51.0 4.8 35 117-151 9-43 (461)
214 PF02882 THF_DHG_CYH_C: Tetrah 95.4 0.04 8.7E-07 42.0 5.5 37 115-151 33-70 (160)
215 PRK14192 bifunctional 5,10-met 95.4 0.033 7.1E-07 46.6 5.4 38 114-151 155-193 (283)
216 PRK12409 D-amino acid dehydrog 95.3 0.022 4.7E-07 50.0 4.3 33 119-151 2-34 (410)
217 PRK14106 murD UDP-N-acetylmura 95.3 0.013 2.8E-07 52.1 2.9 79 116-205 3-85 (450)
218 PRK14194 bifunctional 5,10-met 95.3 0.037 8.1E-07 46.5 5.4 38 114-151 155-193 (301)
219 PRK14189 bifunctional 5,10-met 95.3 0.042 9.1E-07 45.9 5.5 36 115-150 155-191 (285)
220 PF01210 NAD_Gly3P_dh_N: NAD-d 95.3 0.02 4.3E-07 43.5 3.3 32 120-151 1-32 (157)
221 PRK05562 precorrin-2 dehydroge 95.2 0.03 6.6E-07 45.1 4.4 34 116-149 23-56 (223)
222 PF01266 DAO: FAD dependent ox 95.2 0.025 5.3E-07 47.9 4.2 31 120-150 1-31 (358)
223 PRK11883 protoporphyrinogen ox 95.2 0.025 5.4E-07 50.0 4.2 33 119-151 1-35 (451)
224 PRK12921 2-dehydropantoate 2-r 95.2 0.037 8.1E-07 46.4 5.1 33 120-153 2-34 (305)
225 COG0569 TrkA K+ transport syst 95.2 0.02 4.4E-07 46.2 3.3 72 119-194 1-75 (225)
226 PRK06249 2-dehydropantoate 2-r 95.1 0.076 1.6E-06 45.0 6.9 33 119-151 6-38 (313)
227 COG1893 ApbA Ketopantoate redu 95.1 0.037 7.9E-07 46.9 4.9 74 120-194 2-76 (307)
228 KOG0029|consensus 95.1 0.031 6.8E-07 50.5 4.7 35 117-151 14-48 (501)
229 PF13454 NAD_binding_9: FAD-NA 95.0 0.051 1.1E-06 41.2 5.0 35 48-85 121-155 (156)
230 PRK11259 solA N-methyltryptoph 95.0 0.029 6.3E-07 48.4 4.1 31 120-150 5-35 (376)
231 COG3349 Uncharacterized conser 95.0 0.029 6.3E-07 50.0 4.1 33 119-151 1-33 (485)
232 COG1148 HdrA Heterodisulfide r 95.0 0.03 6.6E-07 49.7 4.1 34 118-151 124-157 (622)
233 PRK07233 hypothetical protein; 95.0 0.029 6.3E-07 49.2 4.1 32 120-151 1-32 (434)
234 cd05212 NAD_bind_m-THF_DH_Cycl 95.0 0.067 1.4E-06 39.9 5.3 68 114-207 24-92 (140)
235 TIGR02032 GG-red-SF geranylger 94.9 0.033 7.1E-07 46.0 4.1 32 120-151 2-33 (295)
236 PRK06996 hypothetical protein; 94.9 0.12 2.6E-06 45.2 7.8 32 119-150 12-47 (398)
237 PF00670 AdoHcyase_NAD: S-aden 94.9 0.016 3.5E-07 44.2 2.0 37 115-151 20-56 (162)
238 TIGR03862 flavo_PP4765 unchara 94.8 0.075 1.6E-06 46.3 6.0 46 40-90 98-144 (376)
239 TIGR01377 soxA_mon sarcosine o 94.7 0.035 7.6E-07 47.9 3.9 31 120-150 2-32 (380)
240 COG1635 THI4 Ribulose 1,5-bisp 94.7 0.042 9.1E-07 44.0 3.9 38 113-150 25-62 (262)
241 PRK06475 salicylate hydroxylas 94.7 0.038 8.3E-07 48.3 4.1 33 119-151 3-35 (400)
242 PLN02268 probable polyamine ox 94.7 0.041 8.9E-07 48.6 4.3 33 119-151 1-33 (435)
243 PRK14191 bifunctional 5,10-met 94.6 0.064 1.4E-06 44.8 4.9 38 114-151 153-191 (285)
244 COG0771 MurD UDP-N-acetylmuram 94.5 0.082 1.8E-06 46.9 5.7 77 116-205 5-86 (448)
245 COG1648 CysG Siroheme synthase 94.5 0.059 1.3E-06 43.1 4.3 36 115-150 9-44 (210)
246 PRK07364 2-octaprenyl-6-methox 94.5 0.046 9.9E-07 47.9 4.0 33 119-151 19-51 (415)
247 PF01488 Shikimate_DH: Shikima 94.4 0.066 1.4E-06 39.5 4.2 38 115-152 9-47 (135)
248 PRK06522 2-dehydropantoate 2-r 94.4 0.052 1.1E-06 45.5 4.0 33 120-152 2-34 (304)
249 PRK07608 ubiquinone biosynthes 94.3 0.053 1.1E-06 47.0 4.1 32 120-151 7-38 (388)
250 PRK14188 bifunctional 5,10-met 94.3 0.09 2E-06 44.2 5.3 35 115-149 155-190 (296)
251 TIGR01373 soxB sarcosine oxida 94.3 0.075 1.6E-06 46.5 5.0 42 109-150 21-64 (407)
252 KOG1276|consensus 94.3 0.054 1.2E-06 47.4 4.0 55 117-182 10-67 (491)
253 COG0373 HemA Glutamyl-tRNA red 94.3 0.05 1.1E-06 47.7 3.7 70 116-195 176-248 (414)
254 PRK00711 D-amino acid dehydrog 94.3 0.055 1.2E-06 47.4 4.1 31 120-150 2-32 (416)
255 TIGR02028 ChlP geranylgeranyl 94.2 0.056 1.2E-06 47.4 4.1 32 120-151 2-33 (398)
256 TIGR01988 Ubi-OHases Ubiquinon 94.2 0.056 1.2E-06 46.6 4.0 32 120-151 1-32 (385)
257 PRK07208 hypothetical protein; 94.1 0.059 1.3E-06 48.2 4.1 34 118-151 4-37 (479)
258 COG0665 DadA Glycine/D-amino a 94.1 0.066 1.4E-06 46.3 4.3 33 118-150 4-36 (387)
259 PRK10792 bifunctional 5,10-met 94.1 0.13 2.7E-06 43.1 5.6 37 115-151 156-193 (285)
260 PRK12266 glpD glycerol-3-phosp 94.1 0.06 1.3E-06 48.8 4.1 31 120-150 8-38 (508)
261 PF02737 3HCDH_N: 3-hydroxyacy 94.1 0.07 1.5E-06 41.5 3.9 32 120-151 1-32 (180)
262 PRK07494 2-octaprenyl-6-methox 94.1 0.06 1.3E-06 46.7 3.9 33 119-151 8-40 (388)
263 PRK05192 tRNA uridine 5-carbox 94.1 0.058 1.2E-06 49.8 3.9 31 120-150 6-36 (618)
264 PRK14176 bifunctional 5,10-met 94.1 0.13 2.8E-06 43.0 5.6 36 115-150 161-197 (287)
265 PF01946 Thi4: Thi4 family; PD 94.1 0.066 1.4E-06 42.9 3.7 33 118-150 17-49 (230)
266 PRK11728 hydroxyglutarate oxid 94.0 0.061 1.3E-06 46.9 3.9 31 120-150 4-36 (393)
267 TIGR03364 HpnW_proposed FAD de 94.0 0.065 1.4E-06 46.1 3.9 31 120-150 2-32 (365)
268 PRK08244 hypothetical protein; 93.9 0.066 1.4E-06 48.2 4.0 32 120-151 4-35 (493)
269 PRK08013 oxidoreductase; Provi 93.9 0.068 1.5E-06 46.8 4.0 33 119-151 4-36 (400)
270 TIGR00562 proto_IX_ox protopor 93.9 0.071 1.5E-06 47.4 4.2 33 119-151 3-39 (462)
271 TIGR01984 UbiH 2-polyprenyl-6- 93.9 0.067 1.5E-06 46.2 3.9 30 121-150 2-32 (382)
272 PRK11101 glpA sn-glycerol-3-ph 93.9 0.071 1.5E-06 48.8 4.1 31 120-150 8-38 (546)
273 PRK04176 ribulose-1,5-biphosph 93.8 0.082 1.8E-06 43.6 4.1 34 118-151 25-58 (257)
274 TIGR02360 pbenz_hydroxyl 4-hyd 93.8 0.082 1.8E-06 46.2 4.2 33 119-151 3-35 (390)
275 PRK05476 S-adenosyl-L-homocyst 93.8 0.089 1.9E-06 46.5 4.3 36 116-151 210-245 (425)
276 COG0446 HcaD Uncharacterized N 93.7 0.29 6.2E-06 42.4 7.5 78 121-200 1-108 (415)
277 PRK06126 hypothetical protein; 93.7 0.074 1.6E-06 48.6 4.0 33 119-151 8-40 (545)
278 PRK08243 4-hydroxybenzoate 3-m 93.7 0.08 1.7E-06 46.2 4.0 33 119-151 3-35 (392)
279 TIGR00292 thiazole biosynthesi 93.7 0.088 1.9E-06 43.3 4.0 34 118-151 21-54 (254)
280 PRK14179 bifunctional 5,10-met 93.7 0.14 3E-06 42.8 5.1 36 114-149 154-190 (284)
281 PRK08020 ubiF 2-octaprenyl-3-m 93.7 0.08 1.7E-06 46.0 3.9 32 119-150 6-37 (391)
282 PRK05714 2-octaprenyl-3-methyl 93.6 0.074 1.6E-06 46.5 3.7 32 120-151 4-35 (405)
283 PRK06617 2-octaprenyl-6-methox 93.6 0.074 1.6E-06 46.1 3.6 31 120-150 3-33 (374)
284 COG0240 GpsA Glycerol-3-phosph 93.6 0.085 1.8E-06 44.8 3.8 34 119-152 2-35 (329)
285 PRK01747 mnmC bifunctional tRN 93.6 0.079 1.7E-06 49.6 4.0 32 119-150 261-292 (662)
286 PRK13369 glycerol-3-phosphate 93.6 0.084 1.8E-06 47.8 4.0 31 120-150 8-38 (502)
287 TIGR02023 BchP-ChlP geranylger 93.6 0.083 1.8E-06 46.0 3.9 31 120-150 2-32 (388)
288 PRK14183 bifunctional 5,10-met 93.6 0.15 3.3E-06 42.5 5.1 36 115-150 154-190 (281)
289 TIGR02733 desat_CrtD C-3',4' d 93.5 0.1 2.2E-06 47.0 4.5 33 119-151 2-34 (492)
290 PRK06185 hypothetical protein; 93.5 0.087 1.9E-06 46.0 3.9 32 119-150 7-38 (407)
291 COG0190 FolD 5,10-methylene-te 93.5 0.17 3.7E-06 42.0 5.3 37 115-151 153-190 (283)
292 TIGR00031 UDP-GALP_mutase UDP- 93.5 0.096 2.1E-06 45.7 4.1 31 120-150 3-33 (377)
293 PLN02616 tetrahydrofolate dehy 93.4 0.15 3.2E-06 43.9 5.0 37 115-151 228-265 (364)
294 PLN00093 geranylgeranyl diphos 93.4 0.2 4.4E-06 44.7 6.1 33 119-151 40-72 (450)
295 TIGR02731 phytoene_desat phyto 93.4 0.092 2E-06 46.7 3.9 32 120-151 1-32 (453)
296 PRK12416 protoporphyrinogen ox 93.4 0.097 2.1E-06 46.7 4.1 33 119-151 2-40 (463)
297 PRK07538 hypothetical protein; 93.4 0.097 2.1E-06 46.0 4.0 32 120-151 2-33 (413)
298 PLN02576 protoporphyrinogen ox 93.3 0.11 2.3E-06 46.8 4.3 33 119-151 13-46 (496)
299 COG1233 Phytoene dehydrogenase 93.3 0.13 2.9E-06 46.3 4.9 33 118-150 3-35 (487)
300 cd05191 NAD_bind_amino_acid_DH 93.3 0.2 4.4E-06 33.8 4.7 35 115-149 20-55 (86)
301 PF02826 2-Hacid_dh_C: D-isome 93.3 0.19 4.1E-06 38.9 5.1 41 112-152 30-70 (178)
302 PRK05732 2-octaprenyl-6-methox 93.3 0.095 2.1E-06 45.5 3.7 32 119-150 4-38 (395)
303 PLN02897 tetrahydrofolate dehy 93.2 0.17 3.7E-06 43.3 5.0 37 115-151 211-248 (345)
304 TIGR01790 carotene-cycl lycope 93.2 0.11 2.3E-06 45.2 3.9 30 121-150 2-31 (388)
305 PF01266 DAO: FAD dependent ox 93.2 0.18 4E-06 42.5 5.3 43 41-87 160-203 (358)
306 TIGR02734 crtI_fam phytoene de 93.2 0.086 1.9E-06 47.5 3.5 31 121-151 1-31 (502)
307 PLN02464 glycerol-3-phosphate 93.2 0.11 2.3E-06 48.5 4.1 31 120-150 73-103 (627)
308 PRK10157 putative oxidoreducta 93.2 0.11 2.5E-06 45.9 4.1 31 120-150 7-37 (428)
309 COG0644 FixC Dehydrogenases (f 93.1 0.13 2.7E-06 45.1 4.3 32 120-151 5-36 (396)
310 PRK04308 murD UDP-N-acetylmura 92.9 0.17 3.8E-06 44.9 5.0 78 116-206 3-85 (445)
311 PF12831 FAD_oxidored: FAD dep 92.9 0.11 2.5E-06 45.9 3.8 31 121-151 2-32 (428)
312 TIGR03197 MnmC_Cterm tRNA U-34 92.9 0.28 6E-06 42.6 6.1 44 42-88 148-191 (381)
313 TIGR03329 Phn_aa_oxid putative 92.9 0.12 2.6E-06 46.2 3.9 31 120-150 26-58 (460)
314 PRK08132 FAD-dependent oxidore 92.8 0.12 2.7E-06 47.2 3.9 33 119-151 24-56 (547)
315 PRK10015 oxidoreductase; Provi 92.8 0.14 3E-06 45.5 4.1 32 120-151 7-38 (429)
316 PRK07190 hypothetical protein; 92.7 0.14 3E-06 46.2 4.0 32 120-151 7-38 (487)
317 PRK02705 murD UDP-N-acetylmura 92.7 0.089 1.9E-06 46.9 2.8 31 120-150 2-32 (459)
318 PLN02927 antheraxanthin epoxid 92.7 0.15 3.2E-06 47.8 4.2 34 117-150 80-113 (668)
319 PRK11064 wecC UDP-N-acetyl-D-m 92.6 0.18 3.9E-06 44.6 4.6 36 119-154 4-39 (415)
320 PRK06183 mhpA 3-(3-hydroxyphen 92.6 0.14 3E-06 46.7 4.0 33 119-151 11-43 (538)
321 COG1232 HemY Protoporphyrinoge 92.6 0.16 3.4E-06 45.2 4.1 32 119-150 1-34 (444)
322 cd01075 NAD_bind_Leu_Phe_Val_D 92.6 0.24 5.2E-06 39.2 4.8 38 113-150 23-60 (200)
323 PLN02529 lysine-specific histo 92.6 0.16 3.4E-06 48.1 4.3 35 117-151 159-193 (738)
324 PRK10637 cysG siroheme synthas 92.5 0.16 3.5E-06 45.4 4.2 35 115-149 9-43 (457)
325 KOG2614|consensus 92.5 0.2 4.3E-06 43.7 4.4 33 119-151 3-35 (420)
326 PRK07819 3-hydroxybutyryl-CoA 92.5 0.18 3.9E-06 42.2 4.2 34 119-152 6-39 (286)
327 COG3380 Predicted NAD/FAD-depe 92.4 0.19 4.2E-06 41.6 4.1 31 120-150 3-33 (331)
328 COG2509 Uncharacterized FAD-de 92.4 0.27 5.9E-06 43.4 5.3 43 42-86 187-229 (486)
329 TIGR02732 zeta_caro_desat caro 92.4 0.16 3.4E-06 45.7 4.0 32 120-151 1-32 (474)
330 TIGR02853 spore_dpaA dipicolin 92.4 0.22 4.7E-06 41.8 4.5 38 115-152 148-185 (287)
331 PF00899 ThiF: ThiF family; I 92.3 0.18 3.9E-06 37.1 3.6 32 118-149 2-34 (135)
332 PLN02985 squalene monooxygenas 92.3 0.16 3.5E-06 46.1 4.0 32 119-150 44-75 (514)
333 PRK07066 3-hydroxybutyryl-CoA 92.3 0.2 4.3E-06 42.7 4.2 33 119-151 8-40 (321)
334 PRK09260 3-hydroxybutyryl-CoA 92.2 0.15 3.2E-06 42.7 3.4 34 119-152 2-35 (288)
335 TIGR01989 COQ6 Ubiquinone bios 92.2 0.15 3.3E-06 45.2 3.6 30 120-149 2-35 (437)
336 PF04820 Trp_halogenase: Trypt 92.2 0.19 4.1E-06 44.9 4.2 31 120-150 1-34 (454)
337 PRK14170 bifunctional 5,10-met 92.1 0.34 7.4E-06 40.5 5.2 38 114-151 153-191 (284)
338 PLN02487 zeta-carotene desatur 92.0 0.21 4.5E-06 46.0 4.4 33 119-151 76-108 (569)
339 PRK05329 anaerobic glycerol-3- 92.0 0.46 9.9E-06 42.1 6.3 79 121-200 218-320 (422)
340 TIGR01320 mal_quin_oxido malat 92.0 0.18 3.9E-06 45.5 3.9 31 120-150 2-34 (483)
341 PRK14180 bifunctional 5,10-met 92.0 0.4 8.7E-06 40.0 5.6 37 115-151 155-192 (282)
342 PRK06292 dihydrolipoamide dehy 91.9 0.19 4.2E-06 44.8 3.9 30 120-149 5-34 (460)
343 PRK14169 bifunctional 5,10-met 91.9 0.37 8.1E-06 40.2 5.3 37 115-151 153-190 (282)
344 PRK08294 phenol 2-monooxygenas 91.9 0.18 3.9E-06 47.0 3.8 33 119-151 33-66 (634)
345 PRK08293 3-hydroxybutyryl-CoA 91.9 0.23 5E-06 41.5 4.1 34 119-152 4-37 (287)
346 PTZ00345 glycerol-3-phosphate 91.8 0.4 8.8E-06 41.6 5.6 34 118-151 11-51 (365)
347 COG0578 GlpA Glycerol-3-phosph 91.8 0.22 4.9E-06 45.1 4.2 33 119-151 13-45 (532)
348 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.31 6.8E-06 38.1 4.6 37 115-151 25-62 (194)
349 PRK09897 hypothetical protein; 91.8 0.22 4.8E-06 45.5 4.2 32 119-150 2-35 (534)
350 PRK14173 bifunctional 5,10-met 91.7 0.4 8.7E-06 40.1 5.3 37 115-151 152-189 (287)
351 PF00890 FAD_binding_2: FAD bi 91.7 0.22 4.8E-06 43.6 4.1 31 121-151 2-32 (417)
352 COG0562 Glf UDP-galactopyranos 91.6 0.28 6E-06 41.6 4.2 32 120-151 3-34 (374)
353 PRK14187 bifunctional 5,10-met 91.6 0.42 9.2E-06 40.1 5.3 38 114-151 156-194 (294)
354 PRK14171 bifunctional 5,10-met 91.6 0.42 9.2E-06 40.0 5.3 37 115-151 156-193 (288)
355 PRK11445 putative oxidoreducta 91.5 0.22 4.8E-06 42.8 3.8 31 120-151 3-33 (351)
356 PRK01710 murD UDP-N-acetylmura 91.5 0.23 5E-06 44.4 4.0 77 117-205 13-94 (458)
357 PRK14166 bifunctional 5,10-met 91.5 0.43 9.3E-06 39.9 5.2 37 115-151 154-191 (282)
358 PLN02612 phytoene desaturase 91.5 0.33 7E-06 44.7 5.0 36 116-151 91-126 (567)
359 PTZ00383 malate:quinone oxidor 91.4 0.4 8.7E-06 43.4 5.4 42 43-87 232-273 (497)
360 PRK03369 murD UDP-N-acetylmura 91.4 0.24 5.3E-06 44.7 4.0 72 117-205 11-87 (488)
361 PRK07530 3-hydroxybutyryl-CoA 91.4 0.28 6E-06 41.1 4.1 34 119-152 5-38 (292)
362 PRK14186 bifunctional 5,10-met 91.4 0.47 1E-05 39.9 5.4 37 115-151 155-192 (297)
363 PRK06129 3-hydroxyacyl-CoA deh 91.3 0.26 5.6E-06 41.7 3.9 33 119-151 3-35 (308)
364 PRK08274 tricarballylate dehyd 91.3 0.26 5.6E-06 44.1 4.1 31 120-150 6-36 (466)
365 cd05291 HicDH_like L-2-hydroxy 91.3 0.3 6.4E-06 41.3 4.2 34 119-152 1-36 (306)
366 PRK06035 3-hydroxyacyl-CoA deh 91.2 0.24 5.1E-06 41.5 3.6 35 119-153 4-38 (291)
367 PTZ00367 squalene epoxidase; P 91.2 0.24 5.1E-06 45.6 3.8 34 118-151 33-66 (567)
368 KOG1346|consensus 91.1 0.44 9.5E-06 41.9 5.0 34 174-209 288-321 (659)
369 TIGR01813 flavo_cyto_c flavocy 91.1 0.27 5.9E-06 43.5 4.0 30 121-150 2-32 (439)
370 PRK14182 bifunctional 5,10-met 91.0 0.54 1.2E-05 39.2 5.4 37 115-151 154-191 (282)
371 PLN02568 polyamine oxidase 91.0 0.35 7.7E-06 44.2 4.7 34 118-151 5-43 (539)
372 PRK15116 sulfur acceptor prote 91.0 0.32 7E-06 40.3 4.1 36 115-150 27-63 (268)
373 PLN02676 polyamine oxidase 90.9 0.3 6.4E-06 44.1 4.1 35 117-151 25-60 (487)
374 PLN02328 lysine-specific histo 90.9 0.3 6.5E-06 46.7 4.3 34 118-151 238-271 (808)
375 PRK13977 myosin-cross-reactive 90.9 0.43 9.3E-06 43.8 5.1 34 117-150 21-58 (576)
376 COG0686 Ald Alanine dehydrogen 90.9 0.25 5.5E-06 41.6 3.3 79 71-154 112-204 (371)
377 PRK14177 bifunctional 5,10-met 90.9 0.54 1.2E-05 39.3 5.2 38 114-151 155-193 (284)
378 PRK14172 bifunctional 5,10-met 90.9 0.56 1.2E-05 39.1 5.3 37 115-151 155-192 (278)
379 KOG1298|consensus 90.8 0.33 7.1E-06 42.2 4.0 31 120-150 47-77 (509)
380 PLN02516 methylenetetrahydrofo 90.8 0.59 1.3E-05 39.4 5.4 38 114-151 163-201 (299)
381 PRK14178 bifunctional 5,10-met 90.8 0.49 1.1E-05 39.5 4.9 37 115-151 149-186 (279)
382 PRK04148 hypothetical protein; 90.8 0.44 9.5E-06 35.2 4.1 35 117-152 16-50 (134)
383 PRK14181 bifunctional 5,10-met 90.7 0.57 1.2E-05 39.2 5.2 37 115-151 150-191 (287)
384 PRK08306 dipicolinate synthase 90.6 0.47 1E-05 40.0 4.8 37 115-151 149-185 (296)
385 PRK00676 hemA glutamyl-tRNA re 90.6 0.39 8.5E-06 41.2 4.3 36 115-150 171-207 (338)
386 PRK14619 NAD(P)H-dependent gly 90.5 0.43 9.3E-06 40.3 4.5 34 117-150 3-36 (308)
387 PLN03000 amine oxidase 90.5 0.36 7.7E-06 46.5 4.3 34 118-151 184-217 (881)
388 PRK14190 bifunctional 5,10-met 90.4 0.63 1.4E-05 38.9 5.3 36 115-150 155-191 (284)
389 PF13460 NAD_binding_10: NADH( 90.4 0.43 9.4E-06 36.5 4.2 34 121-154 1-35 (183)
390 PRK11259 solA N-methyltryptoph 90.4 0.56 1.2E-05 40.4 5.2 45 41-89 162-206 (376)
391 PRK13403 ketol-acid reductoiso 90.4 0.5 1.1E-05 40.3 4.7 41 110-150 8-48 (335)
392 TIGR02352 thiamin_ThiO glycine 90.3 0.57 1.2E-05 39.5 5.2 45 41-88 150-194 (337)
393 PRK13339 malate:quinone oxidor 90.3 0.34 7.3E-06 43.9 3.8 30 120-149 8-39 (497)
394 PLN02545 3-hydroxybutyryl-CoA 90.2 0.41 8.9E-06 40.1 4.1 34 119-152 5-38 (295)
395 PRK06701 short chain dehydroge 90.2 0.74 1.6E-05 38.4 5.7 37 114-150 42-79 (290)
396 TIGR00275 flavoprotein, HI0933 90.2 0.82 1.8E-05 40.1 6.2 45 41-89 118-162 (400)
397 PRK05257 malate:quinone oxidor 90.2 0.33 7.2E-06 43.9 3.8 31 120-150 7-39 (494)
398 PLN02661 Putative thiazole syn 90.1 0.33 7.2E-06 41.9 3.5 39 112-150 86-125 (357)
399 TIGR02354 thiF_fam2 thiamine b 90.1 0.4 8.7E-06 38.0 3.8 36 115-150 18-54 (200)
400 cd00401 AdoHcyase S-adenosyl-L 90.1 0.48 1E-05 41.8 4.6 36 116-151 200-235 (413)
401 PTZ00383 malate:quinone oxidor 90.1 0.35 7.6E-06 43.8 3.8 32 119-150 46-79 (497)
402 TIGR02730 carot_isom carotene 90.1 0.37 8E-06 43.5 4.0 32 120-151 2-33 (493)
403 KOG0685|consensus 90.0 0.52 1.1E-05 41.9 4.6 35 117-151 20-55 (498)
404 PF01262 AlaDh_PNT_C: Alanine 89.9 0.52 1.1E-05 36.1 4.2 36 116-151 18-53 (168)
405 PTZ00075 Adenosylhomocysteinas 89.9 0.54 1.2E-05 42.1 4.8 37 114-150 250-286 (476)
406 PF00732 GMC_oxred_N: GMC oxid 89.9 0.38 8.1E-06 40.1 3.7 32 121-152 3-35 (296)
407 PRK06327 dihydrolipoamide dehy 89.9 0.39 8.4E-06 43.1 3.9 30 120-149 6-35 (475)
408 PRK07121 hypothetical protein; 89.8 0.42 9.1E-06 43.1 4.1 32 119-150 21-52 (492)
409 PRK00258 aroE shikimate 5-dehy 89.7 0.57 1.2E-05 39.0 4.6 38 115-152 120-158 (278)
410 cd01065 NAD_bind_Shikimate_DH 89.7 0.65 1.4E-05 34.6 4.5 36 116-151 17-53 (155)
411 COG1004 Ugd Predicted UDP-gluc 89.6 0.53 1.2E-05 41.0 4.3 79 120-199 2-89 (414)
412 PRK13243 glyoxylate reductase; 89.6 0.6 1.3E-05 40.0 4.7 37 114-150 146-182 (333)
413 PRK14620 NAD(P)H-dependent gly 89.4 0.49 1.1E-05 40.2 4.1 32 120-151 2-33 (326)
414 COG3634 AhpF Alkyl hydroperoxi 89.4 0.87 1.9E-05 39.2 5.3 76 120-195 213-323 (520)
415 PRK12480 D-lactate dehydrogena 89.4 0.65 1.4E-05 39.8 4.8 37 114-150 142-178 (330)
416 PRK00421 murC UDP-N-acetylmura 89.4 0.43 9.3E-06 42.7 3.8 75 116-206 5-84 (461)
417 TIGR00275 flavoprotein, HI0933 89.4 0.3 6.5E-06 42.9 2.8 30 122-151 1-30 (400)
418 COG1231 Monoamine oxidase [Ami 89.4 0.55 1.2E-05 41.5 4.3 35 117-151 6-40 (450)
419 PRK08401 L-aspartate oxidase; 89.4 0.47 1E-05 42.6 4.0 32 119-150 2-33 (466)
420 TIGR00936 ahcY adenosylhomocys 89.3 0.6 1.3E-05 41.1 4.5 36 116-151 193-228 (406)
421 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.3 0.4 8.6E-06 43.5 3.5 36 118-153 5-40 (503)
422 PF03807 F420_oxidored: NADP o 89.3 0.73 1.6E-05 31.4 4.2 32 120-151 1-36 (96)
423 PRK08255 salicylyl-CoA 5-hydro 89.2 0.48 1E-05 45.3 4.2 32 120-151 2-35 (765)
424 PRK06847 hypothetical protein; 89.2 0.93 2E-05 39.0 5.7 44 41-87 120-163 (375)
425 PRK14168 bifunctional 5,10-met 89.1 0.81 1.8E-05 38.5 5.0 37 114-150 157-198 (297)
426 TIGR01035 hemA glutamyl-tRNA r 89.0 0.61 1.3E-05 41.3 4.4 37 116-152 178-215 (417)
427 PRK06130 3-hydroxybutyryl-CoA 89.0 0.58 1.3E-05 39.5 4.1 33 119-151 5-37 (311)
428 PRK09620 hypothetical protein; 89.0 0.74 1.6E-05 37.3 4.6 33 117-149 2-51 (229)
429 PRK14167 bifunctional 5,10-met 88.9 0.91 2E-05 38.2 5.2 37 115-151 154-195 (297)
430 PRK14193 bifunctional 5,10-met 88.9 0.91 2E-05 38.0 5.1 36 115-150 155-193 (284)
431 PRK05479 ketol-acid reductoiso 88.9 0.8 1.7E-05 39.2 4.9 41 110-150 9-49 (330)
432 PF13434 K_oxygenase: L-lysine 88.8 0.83 1.8E-05 39.3 5.0 42 42-85 293-339 (341)
433 PRK06481 fumarate reductase fl 88.7 0.52 1.1E-05 42.7 3.9 32 119-150 62-93 (506)
434 PRK01747 mnmC bifunctional tRN 88.5 1.2 2.6E-05 41.8 6.3 43 42-87 421-463 (662)
435 PF01593 Amino_oxidase: Flavin 88.5 0.83 1.8E-05 39.3 4.9 40 43-85 224-263 (450)
436 TIGR02356 adenyl_thiF thiazole 88.5 0.66 1.4E-05 36.7 3.9 37 114-150 17-54 (202)
437 PF00289 CPSase_L_chain: Carba 88.5 0.59 1.3E-05 33.3 3.3 35 119-153 3-37 (110)
438 PRK14185 bifunctional 5,10-met 88.5 1 2.2E-05 37.8 5.2 37 115-151 154-195 (293)
439 PF03446 NAD_binding_2: NAD bi 88.4 0.74 1.6E-05 35.0 4.0 34 119-152 2-35 (163)
440 PRK05808 3-hydroxybutyryl-CoA 88.3 0.51 1.1E-05 39.3 3.4 34 119-152 4-37 (282)
441 PRK07231 fabG 3-ketoacyl-(acyl 88.2 0.93 2E-05 36.4 4.7 37 116-152 3-40 (251)
442 PRK12475 thiamine/molybdopteri 88.2 0.66 1.4E-05 39.9 4.0 36 115-150 21-57 (338)
443 PLN02928 oxidoreductase family 88.1 0.86 1.9E-05 39.3 4.7 37 114-150 155-191 (347)
444 TIGR00518 alaDH alanine dehydr 88.1 0.81 1.8E-05 39.8 4.6 36 116-151 165-200 (370)
445 PRK09414 glutamate dehydrogena 88.1 1.2 2.6E-05 39.7 5.7 35 115-149 229-263 (445)
446 PLN00141 Tic62-NAD(P)-related 88.0 0.96 2.1E-05 36.7 4.7 41 112-152 11-52 (251)
447 PRK00094 gpsA NAD(P)H-dependen 87.9 0.73 1.6E-05 38.9 4.1 32 120-151 3-34 (325)
448 COG0579 Predicted dehydrogenas 87.9 0.66 1.4E-05 41.1 3.8 31 120-150 5-37 (429)
449 TIGR01812 sdhA_frdA_Gneg succi 87.8 0.58 1.3E-05 43.0 3.7 30 121-150 2-31 (566)
450 PRK13339 malate:quinone oxidor 87.8 1.3 2.9E-05 40.1 5.9 44 42-87 199-247 (497)
451 PRK08229 2-dehydropantoate 2-r 87.7 0.72 1.6E-05 39.3 4.0 32 119-150 3-34 (341)
452 TIGR03329 Phn_aa_oxid putative 87.7 1.3 2.8E-05 39.6 5.7 43 41-88 196-238 (460)
453 PRK12837 3-ketosteroid-delta-1 87.5 0.71 1.5E-05 42.0 4.0 30 120-150 9-38 (513)
454 PRK07573 sdhA succinate dehydr 87.5 1 2.2E-05 42.2 5.1 31 119-149 36-66 (640)
455 PRK07774 short chain dehydroge 87.5 1.2 2.5E-05 35.9 4.9 36 116-151 4-40 (250)
456 PRK00257 erythronate-4-phospha 87.4 1 2.2E-05 39.4 4.7 37 113-149 111-147 (381)
457 cd05311 NAD_bind_2_malic_enz N 87.4 0.9 1.9E-05 36.7 4.1 36 115-150 22-60 (226)
458 PRK14618 NAD(P)H-dependent gly 87.4 0.8 1.7E-05 39.0 4.0 34 119-152 5-38 (328)
459 PRK14031 glutamate dehydrogena 87.3 1 2.2E-05 40.1 4.7 35 115-149 225-259 (444)
460 PRK08268 3-hydroxy-acyl-CoA de 87.3 0.78 1.7E-05 41.7 4.1 34 119-152 8-41 (507)
461 cd05213 NAD_bind_Glutamyl_tRNA 87.3 0.86 1.9E-05 38.6 4.2 36 116-151 176-212 (311)
462 KOG4716|consensus 87.3 4.7 0.0001 34.8 8.3 30 120-149 21-50 (503)
463 KOG0405|consensus 87.3 5.4 0.00012 34.5 8.7 30 120-149 22-51 (478)
464 PLN02494 adenosylhomocysteinas 87.2 1 2.2E-05 40.4 4.7 36 116-151 252-287 (477)
465 cd01483 E1_enzyme_family Super 87.2 0.89 1.9E-05 33.6 3.8 31 120-150 1-32 (143)
466 PRK15469 ghrA bifunctional gly 87.2 1.1 2.3E-05 38.2 4.6 36 115-150 133-168 (312)
467 PRK11728 hydroxyglutarate oxid 86.9 1.6 3.4E-05 38.1 5.7 43 41-87 162-204 (393)
468 PRK06436 glycerate dehydrogena 86.9 1.1 2.3E-05 38.0 4.5 37 114-150 118-154 (303)
469 PLN02976 amine oxidase 86.9 1.1 2.3E-05 45.7 5.0 33 118-150 693-725 (1713)
470 TIGR02622 CDP_4_6_dhtase CDP-g 86.9 1.2 2.6E-05 38.1 4.9 35 117-151 3-38 (349)
471 TIGR03378 glycerol3P_GlpB glyc 86.8 1.2 2.6E-05 39.4 4.9 44 41-86 276-321 (419)
472 PRK09126 hypothetical protein; 86.8 1.6 3.5E-05 37.8 5.7 44 41-87 124-167 (392)
473 PRK07803 sdhA succinate dehydr 86.8 0.72 1.6E-05 43.0 3.7 31 120-150 10-40 (626)
474 KOG1800|consensus 86.7 1 2.2E-05 39.1 4.2 35 120-154 22-58 (468)
475 PRK07057 sdhA succinate dehydr 86.7 0.75 1.6E-05 42.6 3.7 32 119-150 13-44 (591)
476 PRK12834 putative FAD-binding 86.7 0.86 1.9E-05 41.8 4.1 32 120-151 6-37 (549)
477 PRK12842 putative succinate de 86.7 0.83 1.8E-05 42.1 4.0 32 119-150 10-41 (574)
478 PF02254 TrkA_N: TrkA-N domain 86.6 1.1 2.5E-05 31.5 3.9 32 121-152 1-32 (116)
479 COG0579 Predicted dehydrogenas 86.6 1.5 3.2E-05 38.9 5.3 45 41-87 166-211 (429)
480 PRK07804 L-aspartate oxidase; 86.5 0.81 1.8E-05 41.9 3.8 32 119-150 17-48 (541)
481 TIGR01811 sdhA_Bsu succinate d 86.5 0.65 1.4E-05 43.1 3.2 30 121-150 1-30 (603)
482 PRK07688 thiamine/molybdopteri 86.5 0.98 2.1E-05 38.8 4.1 36 115-150 21-57 (339)
483 PRK05714 2-octaprenyl-3-methyl 86.5 1.6 3.5E-05 38.0 5.6 43 42-87 126-168 (405)
484 PRK08213 gluconate 5-dehydroge 86.5 1.3 2.9E-05 35.8 4.8 41 111-151 5-46 (259)
485 PRK07531 bifunctional 3-hydrox 86.4 0.95 2.1E-05 41.0 4.2 34 119-152 5-38 (495)
486 PLN02653 GDP-mannose 4,6-dehyd 86.4 1.5 3.2E-05 37.3 5.2 36 116-151 4-40 (340)
487 TIGR03736 PRTRC_ThiF PRTRC sys 86.4 1.2 2.5E-05 36.5 4.2 33 117-149 10-53 (244)
488 PLN02695 GDP-D-mannose-3',5'-e 86.3 1.2 2.5E-05 38.7 4.5 34 117-150 20-54 (370)
489 TIGR03364 HpnW_proposed FAD de 86.2 1.4 3E-05 37.9 4.9 40 42-89 160-199 (365)
490 KOG2852|consensus 86.2 0.44 9.6E-06 39.9 1.7 33 118-150 10-48 (380)
491 PRK08773 2-octaprenyl-3-methyl 86.2 1.7 3.7E-05 37.7 5.6 43 42-87 127-169 (392)
492 KOG2820|consensus 86.2 1 2.2E-05 38.5 3.9 53 41-93 166-218 (399)
493 TIGR01809 Shik-DH-AROM shikima 86.1 1.3 2.8E-05 37.0 4.6 36 116-151 123-159 (282)
494 PRK06854 adenylylsulfate reduc 86.1 0.88 1.9E-05 42.3 3.9 31 120-150 13-45 (608)
495 PRK06057 short chain dehydroge 86.1 1.4 3E-05 35.7 4.6 37 116-152 5-42 (255)
496 PRK14184 bifunctional 5,10-met 86.1 1.6 3.5E-05 36.5 5.1 37 115-151 154-195 (286)
497 PRK15181 Vi polysaccharide bio 86.0 1.2 2.7E-05 38.1 4.5 35 116-150 13-48 (348)
498 TIGR01377 soxA_mon sarcosine o 86.0 1.7 3.7E-05 37.4 5.4 43 41-87 158-200 (380)
499 TIGR00562 proto_IX_ox protopor 85.9 1.5 3.2E-05 39.0 5.1 40 43-85 238-277 (462)
500 cd00757 ThiF_MoeB_HesA_family 85.9 1.1 2.3E-05 36.2 3.8 35 115-149 18-53 (228)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=1.1e-24 Score=192.75 Aligned_cols=166 Identities=28% Similarity=0.477 Sum_probs=137.0
Q ss_pred eEEeCceEEEEEEeeCCCCcEEEecCCe----eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810 44 EIKFGSSWAEIEKFSVPTKCLHFANEEI----TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ 119 (227)
Q Consensus 44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~----~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~ 119 (227)
.|+++++|.+|++.+ +.|.|.+.++ ....||+||+|||....|++|++||.+.+.|..+|++.+++...+++|
T Consensus 129 ~I~~~t~V~~V~~~~---~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk 205 (461)
T PLN02172 129 MVRFETEVVRVEPVD---GKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNE 205 (461)
T ss_pred eEEecCEEEEEeecC---CeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCC
Confidence 489999999998643 6799976421 356899999999987799999999999999999999999999999999
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCccc-cccCC---CceEEcCCccEEeC-CceEEcCCCEEeccEEEEccc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF-KHQIG---DSVVQKPDIKRLLQ-DSVVFQDDTSHPFDSIIYCTG 194 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~-~~~~~---~~i~~~~~i~~~~~-~~v~~~~g~~i~~D~vi~atG 194 (227)
+|+|||+|++|+|+|..|.+.+++|++++|+.... ...++ .++...+.|..+.+ +.|+|+||+.+++|.||+|||
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TG 285 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG 285 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCc
Confidence 99999999999999999999999999999954321 11122 35666677776654 459999999999999999999
Q ss_pred cccccccccccCCcc-cccccC
Q psy810 195 AYKYSYKLTFLATFS-ISMAMS 215 (227)
Q Consensus 195 ~~~~~~~~~~l~~~g-l~~~~~ 215 (227)
+++++ +||++.+ +..+.+
T Consensus 286 -y~~~~--pfL~~~~~i~v~~~ 304 (461)
T PLN02172 286 -YKYHF--PFLETNGYMRIDEN 304 (461)
T ss_pred -CCccc--cccCcccceeeCCC
Confidence 99999 9999755 445544
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.92 E-value=5.2e-25 Score=197.27 Aligned_cols=171 Identities=35% Similarity=0.580 Sum_probs=122.2
Q ss_pred ceeEEeCceEEEEEEeeCC--CCcEEEecCC---eeEEEcCEEEEccCCCCCCCCCC--CCCCCcccceeeecCCCCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVP--TKCLHFANEE---ITLHYNLLQSLPSSHNSVPNIPS--YEGADLFRGLQMHSHDYRVPD 114 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~--~~~~~v~~~~---~~~~~~~~vilAtG~~~~p~~p~--~~g~~~~~~~~~~~~~~~~~~ 114 (227)
.-.|+||++|.++++.++. .+.|+|++.+ .++..||+||+|||.+..|++|. +||++.|.|.++|+.+|.+++
T Consensus 100 ~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~ 179 (531)
T PF00743_consen 100 RKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPE 179 (531)
T ss_dssp GGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGG
T ss_pred cceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChh
Confidence 4489999999999976542 3579997643 24567999999999999999995 999999999999999999999
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------------------cCC------------
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------------------QIG------------ 159 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------------------~~~------------ 159 (227)
.++||+|+|||+|+||+|+|.++++.+++|+++.|++..+-. .++
T Consensus 180 ~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l 259 (531)
T PF00743_consen 180 PFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKL 259 (531)
T ss_dssp GGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------------------------
T ss_pred hcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999987422100 000
Q ss_pred ----------------------------------CceEEcCCccEEeCCceEEcCCCEE-eccEEEEccccccccccccc
Q psy810 160 ----------------------------------DSVVQKPDIKRLLQDSVVFQDDTSH-PFDSIIYCTGAYKYSYKLTF 204 (227)
Q Consensus 160 ----------------------------------~~i~~~~~i~~~~~~~v~~~~g~~i-~~D~vi~atG~~~~~~~~~~ 204 (227)
++|..++.|.++.+++|+|.||+++ ++|.||+||| |+.++ ||
T Consensus 260 ~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TG-Y~~~f--pF 336 (531)
T PF00743_consen 260 NKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTG-YKFSF--PF 336 (531)
T ss_dssp ---------------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE----EE-----TT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc--cc
Confidence 1455567899999999999999985 7999999999 99999 99
Q ss_pred cCCcccccccC
Q psy810 205 LATFSISMAMS 215 (227)
Q Consensus 205 l~~~gl~~~~~ 215 (227)
|++..++..++
T Consensus 337 L~~~~~~~~~~ 347 (531)
T PF00743_consen 337 LDESLIKVDDN 347 (531)
T ss_dssp B-TTTT-S-SS
T ss_pred ccccccccccc
Confidence 99877666543
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.88 E-value=7.9e-23 Score=179.27 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=132.8
Q ss_pred CCCCchhhhhhhcCCCCCCchhhhh------------------hcCCcceEeeecccceeEEeC-ceEEEEEEeeCCCCc
Q psy810 3 LTPSCLPSVLTTYNSEALQPIRKLR------------------ESQPTNFISIAFIPCIEIKFG-SSWAEIEKFSVPTKC 63 (227)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~~~~~~~i~~~-~~V~~i~~~~~~~~~ 63 (227)
+|.||||||.+.+.++.+...+... +.... +... ....+.-.+. ..|+-+.....-.+.
T Consensus 44 ln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~~~~~k~~-v~~~-~~~~~~~l~~~~~V~vi~G~a~f~~~ 121 (454)
T COG1249 44 LNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDK-VVRL-LTGGVEGLLKKNGVDVIRGEARFVDP 121 (454)
T ss_pred EeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHHHHHHHHH-HHHH-HhhhHHHHHhhCCCEEEEEEEEECCC
Confidence 7999999999999988764443221 11100 0000 0000011111 133333332221123
Q ss_pred EEEecCC--eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810 64 LHFANEE--ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA 141 (227)
Q Consensus 64 ~~v~~~~--~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~ 141 (227)
.++.... .+.++++++|||||+ +|..|++++.+... .+.+.+.....+ .+++++|||||.+|+|+|..++++|
T Consensus 122 ~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~~~~~--~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG 196 (454)
T COG1249 122 HTVEVTGEDKETITADNIIIATGS--RPRIPPGPGIDGAR--ILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALG 196 (454)
T ss_pred CEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCCCCCe--EEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcC
Confidence 3443333 578999999999999 99999999876532 333333333333 5899999999999999999999999
Q ss_pred CeEEEEeecCccccccCCC---------------ceEEcCCccEEeCC----ceEEcCCC--EEeccEEEEccccccccc
Q psy810 142 KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQD----SVVFQDDT--SHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 142 ~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~----~v~~~~g~--~i~~D~vi~atG~~~~~~ 200 (227)
.+||++++.+..+.. +++ .+..+..+.+++.+ .+.+++|. .+.+|.+++|+| .+||+
T Consensus 197 ~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG-R~Pn~ 274 (454)
T COG1249 197 SKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG-RKPNT 274 (454)
T ss_pred CcEEEEecCCCCCCc-CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC-CccCC
Confidence 999999996654432 221 23345566677543 26677776 688999999999 99999
Q ss_pred ccc--ccCCcccccccC
Q psy810 201 KLT--FLATFSISMAMS 215 (227)
Q Consensus 201 ~~~--~l~~~gl~~~~~ 215 (227)
+ -|++.|++++..
T Consensus 275 --~~LgLe~~Gv~~~~r 289 (454)
T COG1249 275 --DGLGLENAGVELDDR 289 (454)
T ss_pred --CCCChhhcCceECCC
Confidence 6 678999999875
No 4
>PRK07846 mycothione reductase; Reviewed
Probab=99.86 E-value=2e-21 Score=171.95 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=105.2
Q ss_pred CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810 62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA 141 (227)
Q Consensus 62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~ 141 (227)
+..+|...+++.+.||+||||||+ .|..|++||.+.. ......+..... ..+++++|||+|++|+|+|..|+++|
T Consensus 115 ~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~--~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G 189 (451)
T PRK07846 115 GPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGV--RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALG 189 (451)
T ss_pred cCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCc--cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 345666666668999999999999 8899999986431 111211222212 24689999999999999999999999
Q ss_pred CeEEEEeecCcccccc-----------CCCce--EEcCCccEEeCC--c--eEEcCCCEEeccEEEEccccccccccccc
Q psy810 142 KNVFLSHHISVAFKHQ-----------IGDSV--VQKPDIKRLLQD--S--VVFQDDTSHPFDSIIYCTGAYKYSYKLTF 204 (227)
Q Consensus 142 ~~Vtli~~~~~~~~~~-----------~~~~i--~~~~~i~~~~~~--~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~ 204 (227)
.+|||+++++..+... +..++ ..+..+.+++.+ + +.+.+|+++++|.||+|+| ++||+ ++
T Consensus 190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G-~~pn~--~~ 266 (451)
T PRK07846 190 VRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATG-RVPNG--DL 266 (451)
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEEC-CccCc--cc
Confidence 9999999965433210 11233 345567777543 2 5567888999999999999 99999 88
Q ss_pred c--CCcccccccC
Q psy810 205 L--ATFSISMAMS 215 (227)
Q Consensus 205 l--~~~gl~~~~~ 215 (227)
| +..+++++..
T Consensus 267 l~~~~~gl~~~~~ 279 (451)
T PRK07846 267 LDAAAAGVDVDED 279 (451)
T ss_pred cCchhcCceECCC
Confidence 6 5778887643
No 5
>PLN02507 glutathione reductase
Probab=99.86 E-value=4.8e-21 Score=171.43 Aligned_cols=149 Identities=12% Similarity=0.157 Sum_probs=107.8
Q ss_pred CcEEEecCCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..+.+.+.+++ .+.||+||||||+ .|..|++||.+.. +.+.+...... .+++|+|||+|++|+|+|..+.+
T Consensus 152 ~~v~V~~~~g~~~~~~~d~LIIATGs--~p~~p~ipG~~~~----~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~ 224 (499)
T PLN02507 152 NEVEVTQLDGTKLRYTAKHILIATGS--RAQRPNIPGKELA----ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRG 224 (499)
T ss_pred CEEEEEeCCCcEEEEEcCEEEEecCC--CCCCCCCCCccce----echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHH
Confidence 55777766653 6899999999999 8899999986431 22222222222 36899999999999999999999
Q ss_pred ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cc--eEEcCCCEEeccEEEEccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
++.+|||+++.+..+.. ++ . ++..+..+.++.. ++ +.+.+|+++++|.||+|+| ++||+
T Consensus 225 ~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~pn~ 302 (499)
T PLN02507 225 MGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG-RAPNT 302 (499)
T ss_pred cCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec-CCCCC
Confidence 99999999996544322 21 1 3344556777753 33 5566788899999999999 99999
Q ss_pred cccc--cCCcccccccCCCCCCCCCC
Q psy810 201 KLTF--LATFSISMAMSTPDGPNPTS 224 (227)
Q Consensus 201 ~~~~--l~~~gl~~~~~~~~~~~~~~ 224 (227)
.+ |++.|++++.. |.+++.
T Consensus 303 --~~l~l~~~gl~~~~~---G~I~Vd 323 (499)
T PLN02507 303 --KRLNLEAVGVELDKA---GAVKVD 323 (499)
T ss_pred --CCCCchhhCcEECCC---CcEecC
Confidence 76 57888888753 544443
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.7e-20 Score=154.56 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=125.5
Q ss_pred ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCc
Q psy810 49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGP 128 (227)
Q Consensus 49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~ 128 (227)
..|.+++... +.|.|.++++. +++++||||||. .++.|.+||..+|+++.+|+|..|+. .+.+|+|+|||||+
T Consensus 81 ~~v~~v~~~~---~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~ 153 (305)
T COG0492 81 DEVEKVELEG---GPFKVKTDKGT-YEAKAVIIATGA--GARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGD 153 (305)
T ss_pred EEEEEEeecC---ceEEEEECCCe-EEEeEEEECcCC--cccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCH
Confidence 5666655422 27999999987 999999999999 77888888877899999999999999 88999999999999
Q ss_pred cHHHHHHHHHhccCeEEEEeecCccccc------cCCC--ceE--EcCCccEEeC---CceEEcCC--C--EEeccEEEE
Q psy810 129 SGVDIAMDIEKVAKNVFLSHHISVAFKH------QIGD--SVV--QKPDIKRLLQ---DSVVFQDD--T--SHPFDSIIY 191 (227)
Q Consensus 129 ~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~~~--~i~--~~~~i~~~~~---~~v~~~~g--~--~i~~D~vi~ 191 (227)
+|+|.|.+|.+.+++||+++|++ .++. .+.. ++. .+..+.++.+ +++.+++. . .+++|.+++
T Consensus 154 sAve~Al~L~~~a~~Vtlv~r~~-~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 154 SAVEEALYLSKIAKKVTLVHRRD-EFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred HHHHHHHHHHHhcCeEEEEecCc-ccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEE
Confidence 99999999999999999999964 4443 1111 344 3567888877 36777764 2 579999999
Q ss_pred ccccccccccccccCCcccccc
Q psy810 192 CTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 192 atG~~~~~~~~~~l~~~gl~~~ 213 (227)
++| +.|++ .|+...++ ++
T Consensus 233 ~iG-~~p~~--~~~~~~~~-~~ 250 (305)
T COG0492 233 AIG-HLPNT--ELLKGLGV-LD 250 (305)
T ss_pred ecC-CCCch--HHHhhccc-cC
Confidence 999 99999 99998888 44
No 7
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.84 E-value=9e-21 Score=167.92 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=101.5
Q ss_pred CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810 62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA 141 (227)
Q Consensus 62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~ 141 (227)
+.++|...++..+.||+||||||+ .|..|++.+.+. .....+.+.....+ .+++++|||+|++|+|+|..|.+.+
T Consensus 118 ~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G 192 (452)
T TIGR03452 118 GPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALG 192 (452)
T ss_pred cCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCC
Confidence 456677766668999999999999 888887543211 11122121211222 3689999999999999999999999
Q ss_pred CeEEEEeecCccccccCC------------Cc--eEEcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccccc
Q psy810 142 KNVFLSHHISVAFKHQIG------------DS--VVQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKLT 203 (227)
Q Consensus 142 ~~Vtli~~~~~~~~~~~~------------~~--i~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~ 203 (227)
.+||++++.+..+.. ++ .+ +..+..+.++.. ++ +.+.+|+++++|.||+|+| ++||+ .
T Consensus 193 ~~Vtli~~~~~ll~~-~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G-~~pn~--~ 268 (452)
T TIGR03452 193 TRVTIVNRSTKLLRH-LDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATG-RVPNG--D 268 (452)
T ss_pred CcEEEEEccCccccc-cCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeec-cCcCC--C
Confidence 999999985543221 11 23 334556777753 23 4566788899999999999 99999 8
Q ss_pred cc--CCcccccccC
Q psy810 204 FL--ATFSISMAMS 215 (227)
Q Consensus 204 ~l--~~~gl~~~~~ 215 (227)
+| +..|++++..
T Consensus 269 ~l~~~~~gl~~~~~ 282 (452)
T TIGR03452 269 LLDAEAAGVEVDED 282 (452)
T ss_pred CcCchhcCeeECCC
Confidence 85 5678887643
No 8
>PRK06116 glutathione reductase; Validated
Probab=99.83 E-value=1.8e-20 Score=166.06 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=102.9
Q ss_pred EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810 64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN 143 (227)
Q Consensus 64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~ 143 (227)
+++.. +++.+.||+||||||+ .|..|++||.+. .+++..+..... .+++++|||+|++|+|+|..|.+.+.+
T Consensus 121 ~~v~~-~g~~~~~d~lViATGs--~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~ 192 (450)
T PRK06116 121 HTVEV-NGERYTADHILIATGG--RPSIPDIPGAEY----GITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSE 192 (450)
T ss_pred CEEEE-CCEEEEeCEEEEecCC--CCCCCCCCCcce----eEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 45555 4568999999999999 889999998653 223222222222 368999999999999999999999999
Q ss_pred EEEEeecCccccccCC-------------Cce--EEcCCccEEeC--Cc---eEEcCCCEEeccEEEEcccccccccccc
Q psy810 144 VFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ--DS---VVFQDDTSHPFDSIIYCTGAYKYSYKLT 203 (227)
Q Consensus 144 Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~--~~---v~~~~g~~i~~D~vi~atG~~~~~~~~~ 203 (227)
||++++++..+.. ++ .+| ..+..+.++.. ++ +.+.+|+++++|.||+|+| ++|++ .
T Consensus 193 Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G-~~p~~--~ 268 (450)
T PRK06116 193 THLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIG-REPNT--D 268 (450)
T ss_pred EEEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeC-CCcCC--C
Confidence 9999986543321 11 233 33556777753 22 5667888999999999999 99999 7
Q ss_pred c--cCCcccccccC
Q psy810 204 F--LATFSISMAMS 215 (227)
Q Consensus 204 ~--l~~~gl~~~~~ 215 (227)
+ ++..+++++..
T Consensus 269 ~l~l~~~g~~~~~~ 282 (450)
T PRK06116 269 GLGLENAGVKLNEK 282 (450)
T ss_pred CCCchhcCceECCC
Confidence 5 56778887643
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.83 E-value=2.1e-20 Score=165.38 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=101.3
Q ss_pred cEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810 63 CLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142 (227)
Q Consensus 63 ~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~ 142 (227)
...+. .++..+.||+||||||+ .|..|++||.+.. +.+....... ..+++++|||+|++|+|+|..+.+.+.
T Consensus 119 ~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i~G~~~~----~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~ 190 (446)
T TIGR01424 119 TVEVL-QDGTTYTAKKILIAVGG--RPQKPNLPGHELG----ITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGV 190 (446)
T ss_pred EEEEe-cCCeEEEcCEEEEecCC--cCCCCCCCCccce----echHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 34443 34567999999999999 8899999986431 1211111212 237899999999999999999999999
Q ss_pred eEEEEeecCccccccCC-------------Cce--EEcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccccc
Q psy810 143 NVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKLT 203 (227)
Q Consensus 143 ~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~ 203 (227)
+|+++++.+..+.. ++ .++ ..+..+.++.. ++ +.+.+|.++++|.||+|+| ..||+ .
T Consensus 191 ~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G-~~pn~--~ 266 (446)
T TIGR01424 191 QVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATG-RSPNT--K 266 (446)
T ss_pred eEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeC-CCcCC--C
Confidence 99999986543221 11 133 34556777753 23 5567888999999999999 99999 6
Q ss_pred c--cCCcccccccC
Q psy810 204 F--LATFSISMAMS 215 (227)
Q Consensus 204 ~--l~~~gl~~~~~ 215 (227)
+ |+..+++++..
T Consensus 267 ~l~l~~~g~~~~~~ 280 (446)
T TIGR01424 267 GLGLEAAGVELNDA 280 (446)
T ss_pred cCCccccCeEECCC
Confidence 5 57788877653
No 10
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.83 E-value=1.5e-20 Score=167.57 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=97.7
Q ss_pred eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc---cCeEEEE
Q psy810 71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV---AKNVFLS 147 (227)
Q Consensus 71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli 147 (227)
.+.+.||+||||||+ .|..|++||.+.. +.+.+..... ..+++++|||||++|+|+|..+..+ |.+|||+
T Consensus 147 ~~~~~~d~lIIATGs--~p~~p~i~G~~~~----~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli 219 (486)
T TIGR01423 147 KERLQAEHILLATGS--WPQMLGIPGIEHC----ISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC 219 (486)
T ss_pred ceEEECCEEEEecCC--CCCCCCCCChhhe----echhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 357999999999999 8899999997542 2222222222 2468999999999999999877665 8999999
Q ss_pred eecCccccccCC-------------C--ceEEcCCccEEeC--C---ceEEcCCCEEeccEEEEccccccccccccc--c
Q psy810 148 HHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--D---SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF--L 205 (227)
Q Consensus 148 ~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~---~v~~~~g~~i~~D~vi~atG~~~~~~~~~~--l 205 (227)
++.+..+. .++ . ++..+..+.++.. + .+.+.+|.++++|.||+|+| ++||+ .+ |
T Consensus 220 ~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~Pn~--~~l~l 295 (486)
T TIGR01423 220 YRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG-RVPRT--QTLQL 295 (486)
T ss_pred ecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC-CCcCc--ccCCc
Confidence 98554332 122 1 3344556777753 2 26667888999999999999 99999 75 4
Q ss_pred CCcccccccC
Q psy810 206 ATFSISMAMS 215 (227)
Q Consensus 206 ~~~gl~~~~~ 215 (227)
+..+++++..
T Consensus 296 ~~~gl~~~~~ 305 (486)
T TIGR01423 296 DKVGVELTKK 305 (486)
T ss_pred hhhCceECCC
Confidence 6788887653
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.82 E-value=6.5e-20 Score=162.37 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=100.1
Q ss_pred EEecCCeeEEEcCEEEEccCCCCCCCCC-CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810 65 HFANEEITLHYNLLQSLPSSHNSVPNIP-SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN 143 (227)
Q Consensus 65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~ 143 (227)
++..+ +..+.||+||||||+ .|..| ++||.+.. +.+..+..... .+++++|||||++|+|+|..|++.+.+
T Consensus 120 ~v~v~-~~~~~~d~vIiAtGs--~p~~p~~i~g~~~~----~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~ 191 (450)
T TIGR01421 120 TVEVN-GRDYTAPHILIATGG--KPSFPENIPGAELG----TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSE 191 (450)
T ss_pred EEEEC-CEEEEeCEEEEecCC--CCCCCCCCCCCcee----EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 34443 357999999999999 88888 88986431 12222222222 368999999999999999999999999
Q ss_pred EEEEeecCccccccCC-------------CceE--EcCCccEEeCC--c---eEEcCC-CEEeccEEEEccccccccccc
Q psy810 144 VFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQD--S---VVFQDD-TSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 144 Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~--~---v~~~~g-~~i~~D~vi~atG~~~~~~~~ 202 (227)
|||+++.+..+.. ++ .+|. .+..+.++..+ + +++++| ..+++|.||+|+| ++||+
T Consensus 192 Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G-~~pn~-- 267 (450)
T TIGR01421 192 THLVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG-RKPNT-- 267 (450)
T ss_pred EEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC-CCcCc--
Confidence 9999996543322 22 1333 34567777532 2 566777 4689999999999 99999
Q ss_pred cc--cCCcccccccC
Q psy810 203 TF--LATFSISMAMS 215 (227)
Q Consensus 203 ~~--l~~~gl~~~~~ 215 (227)
.+ |+..+++++..
T Consensus 268 ~~l~l~~~g~~~~~~ 282 (450)
T TIGR01421 268 KGLGLENVGIKLNEK 282 (450)
T ss_pred ccCCccccCcEECCC
Confidence 75 67888887753
No 12
>KOG1399|consensus
Probab=99.82 E-value=2.4e-19 Score=156.83 Aligned_cols=166 Identities=33% Similarity=0.559 Sum_probs=134.8
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecCCe----eEEEcCEEEEccCCCCCCCCCCCCC--CCcccceeeecCCCCCC
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEI----TLHYNLLQSLPSSHNSVPNIPSYEG--ADLFRGLQMHSHDYRVP 113 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~----~~~~~~~vilAtG~~~~p~~p~~~g--~~~~~~~~~~~~~~~~~ 113 (227)
.....|+++++|..++...+ +.|.|.+.++ ....||.|++|||.+..|++|.+|| .+.|.|..+|+.+|+.+
T Consensus 104 ~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~ 181 (448)
T KOG1399|consen 104 DLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP 181 (448)
T ss_pred ChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCc
Confidence 33447899998888886553 6899976432 5889999999999986699999998 66899999999999999
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec---CccccccCCCceEEcCCccEEeCCceEEc-CCCEEeccEE
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI---SVAFKHQIGDSVVQKPDIKRLLQDSVVFQ-DDTSHPFDSI 189 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~---~~~~~~~~~~~i~~~~~i~~~~~~~v~~~-~g~~i~~D~v 189 (227)
+.+.+|+|+|||.|+||+|++.+++..+++|++..+. .......+..++.+.+.|..+.+++..+. ++....+|.+
T Consensus 182 e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~i 261 (448)
T KOG1399|consen 182 EKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRI 261 (448)
T ss_pred ccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceEEccccccccCcceEEEcCceeEEeeeE
Confidence 9999999999999999999999999999999988641 11122223445555556888888885554 4556789999
Q ss_pred EEccccccccccccccCCccc
Q psy810 190 IYCTGAYKYSYKLTFLATFSI 210 (227)
Q Consensus 190 i~atG~~~~~~~~~~l~~~gl 210 (227)
|+||| +...+ +||++.++
T Consensus 262 i~ctg-y~y~f--Pfl~~~~~ 279 (448)
T KOG1399|consen 262 IFCTG-YKYKF--PFLETLGL 279 (448)
T ss_pred EEeee-eEeec--ceeccCCc
Confidence 99999 99999 99998885
No 13
>PRK06370 mercuric reductase; Validated
Probab=99.82 E-value=8.9e-20 Score=162.11 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=100.1
Q ss_pred EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810 64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN 143 (227)
Q Consensus 64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~ 143 (227)
.++..+ +..+.||+||||||+ .|..|++||.+... .+...+..+.. ..+++|+|||+|++|+|+|..|.+.+.+
T Consensus 123 ~~v~v~-~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~ 196 (463)
T PRK06370 123 NTVRVG-GETLRAKRIFINTGA--RAAIPPIPGLDEVG--YLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSE 196 (463)
T ss_pred CEEEEC-cEEEEeCEEEEcCCC--CCCCCCCCCCCcCc--eEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 344443 357999999999999 89999999976421 23333333222 2478999999999999999999999999
Q ss_pred EEEEeecCcccccc-----------C-CCce--EEcCCccEEeCC--c--eEEc--C-CCEEeccEEEEccccccccccc
Q psy810 144 VFLSHHISVAFKHQ-----------I-GDSV--VQKPDIKRLLQD--S--VVFQ--D-DTSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 144 Vtli~~~~~~~~~~-----------~-~~~i--~~~~~i~~~~~~--~--v~~~--~-g~~i~~D~vi~atG~~~~~~~~ 202 (227)
|+|+++.+..+... + ..++ ..+..+.++..+ + +.+. + +.++++|.||+|+| ++||+
T Consensus 197 Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G-~~pn~-- 273 (463)
T PRK06370 197 VTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG-RVPNT-- 273 (463)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC-CCcCC--
Confidence 99999965433210 0 1233 345567777642 2 3332 2 34699999999999 99999
Q ss_pred c-c-cCCccccccc
Q psy810 203 T-F-LATFSISMAM 214 (227)
Q Consensus 203 ~-~-l~~~gl~~~~ 214 (227)
. + +++.|++++.
T Consensus 274 ~~l~l~~~g~~~~~ 287 (463)
T PRK06370 274 DDLGLEAAGVETDA 287 (463)
T ss_pred CCcCchhhCceECC
Confidence 7 3 5777887764
No 14
>PLN02546 glutathione reductase
Probab=99.82 E-value=5.1e-20 Score=166.23 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=97.6
Q ss_pred EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeE
Q psy810 65 HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144 (227)
Q Consensus 65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~V 144 (227)
++..+ ++.+.||+||||||+ .|..|++||.+.. +......+. ...+++|+|||+|++|+|+|..|.+++.+|
T Consensus 207 ~V~v~-G~~~~~D~LVIATGs--~p~~P~IpG~~~v----~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~V 278 (558)
T PLN02546 207 TVDVD-GKLYTARNILIAVGG--RPFIPDIPGIEHA----IDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDV 278 (558)
T ss_pred EEEEC-CEEEECCEEEEeCCC--CCCCCCCCChhhc----cCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeE
Confidence 44443 457999999999999 8899999996531 222111111 225789999999999999999999999999
Q ss_pred EEEeecCccccccCC-------------CceEE--cCCccEEeC--Cc-e--EEcCCCEEeccEEEEccccccccccccc
Q psy810 145 FLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLLQ--DS-V--VFQDDTSHPFDSIIYCTGAYKYSYKLTF 204 (227)
Q Consensus 145 tli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~~--~~-v--~~~~g~~i~~D~vi~atG~~~~~~~~~~ 204 (227)
||+++.+..+. .++ .+|++ +..+.++.. ++ + .+.++....+|.||+|+| ++||+ .+
T Consensus 279 tlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G-~~Pnt--~~ 354 (558)
T PLN02546 279 HVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATG-RKPNT--KN 354 (558)
T ss_pred EEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeec-cccCC--Cc
Confidence 99998554332 121 23443 455667753 22 3 334444456899999999 99999 86
Q ss_pred --cCCcccccccC
Q psy810 205 --LATFSISMAMS 215 (227)
Q Consensus 205 --l~~~gl~~~~~ 215 (227)
|++.|++++..
T Consensus 355 L~le~~gl~~d~~ 367 (558)
T PLN02546 355 LGLEEVGVKMDKN 367 (558)
T ss_pred CChhhcCCcCCCC
Confidence 57888888753
No 15
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.81 E-value=1.2e-19 Score=161.33 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=103.6
Q ss_pred CcEEEecCCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
....+.+.++. .+.||+||+|||+ .|..|+.++.+. ...+++....+... .+++++|||+|.+|+|+|..|++
T Consensus 124 ~~v~V~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~--~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~ 198 (466)
T PRK07845 124 HRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDG--ERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTE 198 (466)
T ss_pred CEEEEEeCCCceEEEecCEEEEcCCC--CCCCCCCCCCCC--ceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHH
Confidence 45666655543 7999999999999 777766654321 12344444433333 36899999999999999999999
Q ss_pred ccCeEEEEeecCccccccC------------CCceE--EcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQI------------GDSVV--QKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYK 201 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~------------~~~i~--~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~ 201 (227)
++.+||++++.+..+.... ..+|. .+..+.+++. ++ +.+.+|+++++|.||+|+| ++||+
T Consensus 199 ~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G-~~pn~- 276 (466)
T PRK07845 199 LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG-SVPNT- 276 (466)
T ss_pred cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec-CCcCC-
Confidence 9999999998554332211 12343 3456777742 33 5567888999999999999 99999
Q ss_pred ccc--cCCcccccccC
Q psy810 202 LTF--LATFSISMAMS 215 (227)
Q Consensus 202 ~~~--l~~~gl~~~~~ 215 (227)
.+ |++.+++++..
T Consensus 277 -~~l~l~~~gl~~~~~ 291 (466)
T PRK07845 277 -AGLGLEEAGVELTPS 291 (466)
T ss_pred -CCCCchhhCceECCC
Confidence 75 67888888753
No 16
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.81 E-value=1.2e-19 Score=161.24 Aligned_cols=143 Identities=12% Similarity=0.181 Sum_probs=100.2
Q ss_pred EEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810 64 LHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142 (227)
Q Consensus 64 ~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~ 142 (227)
+++...++ ..+.+|+||||||+ .|..|++||.+... .++......... .+++++|||+|.+|+|+|..|.+.+.
T Consensus 116 ~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i~G~~~~~--~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~ 190 (463)
T TIGR02053 116 KTVKVDLGREVRGAKRFLIATGA--RPAIPPIPGLKEAG--YLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGS 190 (463)
T ss_pred CEEEEcCCeEEEEeCEEEEcCCC--CCCCCCCCCcccCc--eECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 45555443 46899999999999 88999999976532 232222222222 35899999999999999999999999
Q ss_pred eEEEEeecCcccccc-----------C-CCceE--EcCCccEEeCC--c--eEEcC---CCEEeccEEEEcccccccccc
Q psy810 143 NVFLSHHISVAFKHQ-----------I-GDSVV--QKPDIKRLLQD--S--VVFQD---DTSHPFDSIIYCTGAYKYSYK 201 (227)
Q Consensus 143 ~Vtli~~~~~~~~~~-----------~-~~~i~--~~~~i~~~~~~--~--v~~~~---g~~i~~D~vi~atG~~~~~~~ 201 (227)
+||++++.+..+... + ..+|+ .+..|.++..+ . +.+.+ +.++++|.||+|+| ++|++
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G-~~p~~- 268 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG-RRPNT- 268 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC-CCcCC-
Confidence 999999965433210 0 11333 34557777543 2 34432 35799999999999 99999
Q ss_pred cc-c-cCCccccccc
Q psy810 202 LT-F-LATFSISMAM 214 (227)
Q Consensus 202 ~~-~-l~~~gl~~~~ 214 (227)
. + ++..+++++.
T Consensus 269 -~~l~l~~~g~~~~~ 282 (463)
T TIGR02053 269 -DGLGLEKAGVKLDE 282 (463)
T ss_pred -CCCCccccCCEECC
Confidence 7 3 6777887764
No 17
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=1.4e-19 Score=159.87 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=120.5
Q ss_pred CCCCchhhhhhhcCCCCCCchhhhhhcCC---cceE----eeecccceeEEeCceEEEEEEeeCCCCcEEEec-CCeeEE
Q psy810 3 LTPSCLPSVLTTYNSEALQPIRKLRESQP---TNFI----SIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEITLH 74 (227)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~---~~~~----~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~~~~ 74 (227)
+|.||||+|.+.+..+....+.++..... ..+. ..-...+++++.+.. ..++ .....+.. ++...+
T Consensus 44 ~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~-~~~~-----~~~v~v~~~~~~~~~ 117 (438)
T PRK07251 44 INIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEA-HFVS-----NKVIEVQAGDEKIEL 117 (438)
T ss_pred ecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-----CCEEEEeeCCCcEEE
Confidence 68899999998877654433333322110 0000 000112233332221 1110 12222332 223579
Q ss_pred EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810 75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF 154 (227)
Q Consensus 75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~ 154 (227)
.||+||||||+ .|..|++||.+.... .+.+....... ..+++|+|||+|++|+|+|..+++.+.+|+++++.+..+
T Consensus 118 ~~d~vViATGs--~~~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 118 TAETIVINTGA--VSNVLPIPGLADSKH-VYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred EcCEEEEeCCC--CCCCCCCCCcCCCCc-EEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 99999999999 889999999754321 22222222222 247899999999999999999999999999999965433
Q ss_pred cccC------------CCceE--EcCCccEEeCC--ce-EEcCCCEEeccEEEEcccccccccccccc--CCccccccc
Q psy810 155 KHQI------------GDSVV--QKPDIKRLLQD--SV-VFQDDTSHPFDSIIYCTGAYKYSYKLTFL--ATFSISMAM 214 (227)
Q Consensus 155 ~~~~------------~~~i~--~~~~i~~~~~~--~v-~~~~g~~i~~D~vi~atG~~~~~~~~~~l--~~~gl~~~~ 214 (227)
.... ..+|. .+..+.++..+ .+ ...+|+++++|.+|+|+| ++|++ ..+ +..+++++.
T Consensus 194 ~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G-~~p~~--~~l~l~~~~~~~~~ 269 (438)
T PRK07251 194 PREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATG-RKPNT--EPLGLENTDIELTE 269 (438)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeC-CCCCc--ccCCchhcCcEECC
Confidence 2111 11333 34567777543 33 334677899999999999 99999 654 445665543
No 18
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.81 E-value=2.9e-19 Score=157.75 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=116.5
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecC---CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANE---EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP---- 113 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~---~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~---- 113 (227)
.+++++++++|.+|+..+ ....+... +...+.||+||||||+ .|..|++++... +....+.+.
T Consensus 71 ~~i~v~~~~~V~~Id~~~---~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~~~~-----~~~~~~~~~~~l~ 140 (438)
T PRK13512 71 KQITVKTYHEVIAINDER---QTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDIT-----FTLRNLEDTDAID 140 (438)
T ss_pred CCCEEEeCCEEEEEECCC---CEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCCCCe-----EEecCHHHHHHHH
Confidence 456788889999987522 33444332 2235799999999999 888777654221 111111111
Q ss_pred ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc
Q psy810 114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS 175 (227)
Q Consensus 114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~ 175 (227)
....+++++|||+|++|+|+|..|++.+.+|||+++.+..+ ..++ . ++..+..+.++++..
T Consensus 141 ~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~ 219 (438)
T PRK13512 141 QFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAINGNE 219 (438)
T ss_pred HHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE
Confidence 12246899999999999999999999999999999854322 1121 1 334456788888777
Q ss_pred eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810 176 VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS 215 (227)
Q Consensus 176 v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~ 215 (227)
+++.+|+.+++|.|++|+| ++||+ ++|++.|++++..
T Consensus 220 v~~~~g~~~~~D~vl~a~G-~~pn~--~~l~~~gl~~~~~ 256 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVG-THPNS--KFIESSNIKLDDK 256 (438)
T ss_pred EEECCCCEEEeCEEEECcC-CCcCh--HHHHhcCcccCCC
Confidence 8888899999999999999 99999 9999999888653
No 19
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=6.5e-19 Score=155.69 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=103.2
Q ss_pred CcEEEecCCee-EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810 62 KCLHFANEEIT-LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 62 ~~~~v~~~~~~-~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~ 140 (227)
+.+.+.+.++. .+.||+||||||+ .|..|++||.+.+.+ .++...+.... ..+++++|||+|.+|+|+|..|.+.
T Consensus 105 ~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~ 180 (441)
T PRK08010 105 HSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANF 180 (441)
T ss_pred CEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHC
Confidence 55666665553 6999999999999 889999999765433 23332233322 3468999999999999999999999
Q ss_pred cCeEEEEeecCcccccc-----------C-CCce--EEcCCccEEeCC--ceEEc-CCCEEeccEEEEcccccccccccc
Q psy810 141 AKNVFLSHHISVAFKHQ-----------I-GDSV--VQKPDIKRLLQD--SVVFQ-DDTSHPFDSIIYCTGAYKYSYKLT 203 (227)
Q Consensus 141 ~~~Vtli~~~~~~~~~~-----------~-~~~i--~~~~~i~~~~~~--~v~~~-~g~~i~~D~vi~atG~~~~~~~~~ 203 (227)
+.+|||+++.+..+... + ..+| ..+..+.++..+ .+.+. ++.++++|.|++|+| ..||+ .
T Consensus 181 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G-~~pn~--~ 257 (441)
T PRK08010 181 GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASG-RQPAT--A 257 (441)
T ss_pred CCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeec-CCcCC--C
Confidence 99999999854333211 0 1133 335567777542 34332 334689999999999 99999 7
Q ss_pred c--cCCccccccc
Q psy810 204 F--LATFSISMAM 214 (227)
Q Consensus 204 ~--l~~~gl~~~~ 214 (227)
+ +...|++++.
T Consensus 258 ~l~~~~~gl~~~~ 270 (441)
T PRK08010 258 SLHPENAGIAVNE 270 (441)
T ss_pred CcCchhcCcEECC
Confidence 6 4577787764
No 20
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.80 E-value=2.8e-19 Score=168.00 Aligned_cols=162 Identities=14% Similarity=0.189 Sum_probs=123.3
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P 115 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~ 115 (227)
.+++++.+++|.+|+. ....|.+.++..+.||+||||||+ .|..|++||.+... ++.+..+.+.. .
T Consensus 72 ~gI~~~~g~~V~~Id~-----~~~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~--v~~~rt~~d~~~l~~~~ 142 (847)
T PRK14989 72 HGIKVLVGERAITINR-----QEKVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD--CFVYRTIEDLNAIEACA 142 (847)
T ss_pred CCCEEEcCCEEEEEeC-----CCcEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC--eEEECCHHHHHHHHHHH
Confidence 4678888999998875 446677777888999999999999 88999999976421 22222222221 1
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC------
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD------ 174 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~------ 174 (227)
..+++++|||||.+|+|+|..|.+.|.+|+++++.+..+...++ . ++..+..+.++.++
T Consensus 143 ~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~ 222 (847)
T PRK14989 143 RRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARK 222 (847)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceE
Confidence 24789999999999999999999999999999985543332222 1 33445667777532
Q ss_pred ceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 175 SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 175 ~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
.+.+.||+++++|.||+|+| ++||. .++.+.|++++.
T Consensus 223 ~v~~~dG~~i~~D~Vv~A~G-~rPn~--~L~~~~Gl~~~~ 259 (847)
T PRK14989 223 TMRFADGSELEVDFIVFSTG-IRPQD--KLATQCGLAVAP 259 (847)
T ss_pred EEEECCCCEEEcCEEEECCC-cccCc--hHHhhcCccCCC
Confidence 36788999999999999999 99999 888899998875
No 21
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.80 E-value=1e-18 Score=146.22 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=121.0
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV 121 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 121 (227)
++++++ ++|.+++..+ +.|.+.+.++..+.||+||+|||+ .|..|++||.+.+.+..++++..++....++++|
T Consensus 71 gv~~~~-~~v~~v~~~~---~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v 144 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSD---RPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEV 144 (300)
T ss_pred CCeEEE-EEEEEEEecC---CeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccEEEeeecChhhcCCCEE
Confidence 456777 7888887532 568888777778999999999999 7888899997766556666665555555678999
Q ss_pred EEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccC-CC-ceEE--cCCccEEeCCc----eEEc---CC--CE
Q psy810 122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQI-GD-SVVQ--KPDIKRLLQDS----VVFQ---DD--TS 183 (227)
Q Consensus 122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~-~~-~i~~--~~~i~~~~~~~----v~~~---~g--~~ 183 (227)
+|+|+|++|+|+|..|.+.+.+|+++++++.... ..+ .. ++++ ...+.++..++ +++. +| .+
T Consensus 145 ~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~ 224 (300)
T TIGR01292 145 AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE 224 (300)
T ss_pred EEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE
Confidence 9999999999999999999999999999542210 011 12 4443 45677776543 4443 23 46
Q ss_pred EeccEEEEccccccccccccccCCcccccc
Q psy810 184 HPFDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
+++|.+|+|+| ++|+. +++..+ ++++
T Consensus 225 i~~D~vi~a~G-~~~~~--~~l~~~-~~~~ 250 (300)
T TIGR01292 225 LKVDGVFIAIG-HEPNT--ELLKGL-LELD 250 (300)
T ss_pred EEccEEEEeeC-CCCCh--HHHHHh-heec
Confidence 89999999999 99999 899877 6554
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=99.79 E-value=6.8e-19 Score=156.67 Aligned_cols=143 Identities=9% Similarity=0.113 Sum_probs=100.3
Q ss_pred CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
+.+.+.+.++ ..++||+||||||+ .|..|++||.+... .++....... ...+++++|||+|++|+|+|..|.+
T Consensus 125 ~~~~V~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~ 199 (468)
T PRK14694 125 RTLTVTLNDGGEQTVHFDRAFIGTGA--RPAEPPVPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFAR 199 (468)
T ss_pred CEEEEEecCCCeEEEECCEEEEeCCC--CCCCCCCCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHH
Confidence 5688876654 47999999999999 88999999976532 2222211111 1236899999999999999999999
Q ss_pred ccCeEEEEeecCccccccC------------CCce--EEcCCccEEeCCc--eEE-cCCCEEeccEEEEccccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQI------------GDSV--VQKPDIKRLLQDS--VVF-QDDTSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~------------~~~i--~~~~~i~~~~~~~--v~~-~~g~~i~~D~vi~atG~~~~~~~~ 202 (227)
++.+||++.+ +..+.... ..+| ..+..+.++..++ +.+ .++.++++|.||+|+| ..||+
T Consensus 200 ~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G-~~pn~-- 275 (468)
T PRK14694 200 LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATG-RTPNT-- 275 (468)
T ss_pred cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccC-CCCCc--
Confidence 9999999987 43332110 1133 3455677775432 222 2455799999999999 99999
Q ss_pred ccc--CCcccccc
Q psy810 203 TFL--ATFSISMA 213 (227)
Q Consensus 203 ~~l--~~~gl~~~ 213 (227)
.++ +..+++.+
T Consensus 276 ~~l~l~~~g~~~~ 288 (468)
T PRK14694 276 ENLNLESIGVETE 288 (468)
T ss_pred CCCCchhcCcccC
Confidence 765 45666543
No 23
>PTZ00058 glutathione reductase; Provisional
Probab=99.79 E-value=7.5e-19 Score=158.65 Aligned_cols=129 Identities=12% Similarity=0.273 Sum_probs=93.4
Q ss_pred CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEe
Q psy810 69 EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148 (227)
Q Consensus 69 ~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~ 148 (227)
+++..+.||+||||||+ .|..|++||.+. .+.+..+..... +++|+|||+|++|+|+|..+.++|.+||+++
T Consensus 196 ~~g~~i~ad~lVIATGS--~P~~P~IpG~~~----v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~ 267 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGN--KPIFPDVKGKEF----TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFA 267 (561)
T ss_pred CCCcEEECCEEEEecCC--CCCCCCCCCcee----EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 45567999999999999 889999999642 233333332222 7899999999999999999999999999999
Q ss_pred ecCccccccCC-------------Cc--eEEcCCccEEeCC---c--eEEcCC-CEEeccEEEEccccccccccccccCC
Q psy810 149 HISVAFKHQIG-------------DS--VVQKPDIKRLLQD---S--VVFQDD-TSHPFDSIIYCTGAYKYSYKLTFLAT 207 (227)
Q Consensus 149 ~~~~~~~~~~~-------------~~--i~~~~~i~~~~~~---~--v~~~~g-~~i~~D~vi~atG~~~~~~~~~~l~~ 207 (227)
+.+..+. .++ .+ +..+..+.++.++ + +.+.++ +++++|.||+|+| ++||+ .+|..
T Consensus 268 ~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G-r~Pn~--~~L~l 343 (561)
T PTZ00058 268 RGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG-RSPNT--EDLNL 343 (561)
T ss_pred ecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC-CCCCc--cccCc
Confidence 9654332 121 13 3345567777642 2 333444 4699999999999 99999 87754
Q ss_pred cc
Q psy810 208 FS 209 (227)
Q Consensus 208 ~g 209 (227)
.+
T Consensus 344 ~~ 345 (561)
T PTZ00058 344 KA 345 (561)
T ss_pred cc
Confidence 33
No 24
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.79 E-value=9.9e-19 Score=163.91 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=123.2
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P 115 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~ 115 (227)
.+++++++++|.+|+. ..+.|.+.++..+.||+||||||+ .|+.|++||.+.. + ++.+....+.. .
T Consensus 67 ~gv~~~~g~~V~~Id~-----~~k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~-~-v~~~rt~~d~~~i~~~~ 137 (785)
T TIGR02374 67 HGITLYTGETVIQIDT-----DQKQVITDAGRTLSYDKLILATGS--YPFILPIPGADKK-G-VYVFRTIEDLDAIMAMA 137 (785)
T ss_pred CCCEEEcCCeEEEEEC-----CCCEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCC-C-EEEeCCHHHHHHHHHHh
Confidence 4678899999999875 456788888888999999999999 8899999997642 2 22222222211 1
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC----ce
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD----SV 176 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~----~v 176 (227)
..+++++|||||.+|+|+|..|.+.|.+|+++++.+..+...++ . ++..+..+.++.++ ++
T Consensus 138 ~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v 217 (785)
T TIGR02374 138 QRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRI 217 (785)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEE
Confidence 24689999999999999999999999999999986544332222 1 34445667777543 37
Q ss_pred EEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810 177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
.+.||+++++|+||+|+| ++||. .++.+.+|+++
T Consensus 218 ~~~dG~~i~~D~Vi~a~G-~~Pn~--~la~~~gl~~~ 251 (785)
T TIGR02374 218 RFKDGSSLEADLIVMAAG-IRPND--ELAVSAGIKVN 251 (785)
T ss_pred EECCCCEEEcCEEEECCC-CCcCc--HHHHhcCCccC
Confidence 889999999999999999 99999 88888888775
No 25
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.79 E-value=3.2e-18 Score=154.03 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=127.3
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN 120 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 120 (227)
.+++++++++|.++...+ +.|.+.+.++..+.||.||+|||+ .|+.|++||.+.+.+..++++..++...+++++
T Consensus 279 ~gv~i~~~~~V~~I~~~~---~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~ 353 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAA---GLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKR 353 (517)
T ss_pred CCCEEEcCCEEEEEEecC---CeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCceEEEeeccCchhcCCCE
Confidence 356788899999987632 578888777778999999999999 778889999877777778887777776678999
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccCC--CceEE--cCCccEEeCC-----ceEEc---CCC-
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQIG--DSVVQ--KPDIKRLLQD-----SVVFQ---DDT- 182 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~~--~~i~~--~~~i~~~~~~-----~v~~~---~g~- 182 (227)
|+|||+|++|+|+|..|...+++||++.+++.... ..+. .+|.+ ...+.++.++ ++++. +|.
T Consensus 354 VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~ 433 (517)
T PRK15317 354 VAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE 433 (517)
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE
Confidence 99999999999999999999999999998543211 1111 23443 4556677654 24554 343
Q ss_pred -EEeccEEEEccccccccccccccCCccccccc
Q psy810 183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
++++|.+++|+| ++||+ .|++.. ++++.
T Consensus 434 ~~i~~D~v~~~~G-~~p~~--~~l~~~-v~~~~ 462 (517)
T PRK15317 434 HHLELEGVFVQIG-LVPNT--EWLKGT-VELNR 462 (517)
T ss_pred EEEEcCEEEEeEC-CccCc--hHHhhh-eeeCC
Confidence 489999999999 99999 999876 66654
No 26
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.78 E-value=6.4e-19 Score=156.52 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=103.2
Q ss_pred CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..+.+.+.++ ..+.||+||||||+ .|..|++++.+.. ..+++....... ..+++++|||+|++|+|+|..|++
T Consensus 122 ~~~~v~~~~g~~~~~~~d~lviATGs--~p~~p~~~~~~~~--~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~ 196 (461)
T PRK05249 122 HTVEVECPDGEVETLTADKIVIATGS--RPYRPPDVDFDHP--RIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAA 196 (461)
T ss_pred CEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCCC--eEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHH
Confidence 4566665544 47999999999999 8888887764321 123332232222 347999999999999999999999
Q ss_pred ccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEe--CCc--eEEcCCCEEeccEEEEccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLL--QDS--VVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~--~~~--v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
.+.+|||+++++..+.. ++ .++ .....+.++. +++ +++.+|+++++|.||+|+| .+||+
T Consensus 197 ~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G-~~p~~ 274 (461)
T PRK05249 197 LGVKVTLINTRDRLLSF-LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANG-RTGNT 274 (461)
T ss_pred cCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeec-CCccc
Confidence 99999999996543321 11 133 3455677775 333 4566788899999999999 99999
Q ss_pred cccc--cCCccccccc
Q psy810 201 KLTF--LATFSISMAM 214 (227)
Q Consensus 201 ~~~~--l~~~gl~~~~ 214 (227)
.+ ++..+++++.
T Consensus 275 --~~l~l~~~g~~~~~ 288 (461)
T PRK05249 275 --DGLNLENAGLEADS 288 (461)
T ss_pred --cCCCchhhCcEecC
Confidence 74 5777888764
No 27
>PRK10262 thioredoxin reductase; Provisional
Probab=99.78 E-value=4.6e-18 Score=144.30 Aligned_cols=153 Identities=12% Similarity=0.199 Sum_probs=115.1
Q ss_pred eEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCcc
Q psy810 50 SWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPS 129 (227)
Q Consensus 50 ~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~ 129 (227)
+|..|+.. .+.|.+..+.+ .+.||+||+|||+ .|+.|++||.+.+.+..++++.+++.....+++|+|||+|++
T Consensus 84 ~v~~v~~~---~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~ 157 (321)
T PRK10262 84 HINKVDLQ---NRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNT 157 (321)
T ss_pred EEEEEEec---CCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHH
Confidence 45555542 26677766544 6899999999999 788999999877777778888888777778999999999999
Q ss_pred HHHHHHHHHhccCeEEEEeecCccccc----------cC-CCceEE--cCCccEEeCC-----ceEEcCC------CEEe
Q psy810 130 GVDIAMDIEKVAKNVFLSHHISVAFKH----------QI-GDSVVQ--KPDIKRLLQD-----SVVFQDD------TSHP 185 (227)
Q Consensus 130 g~e~a~~l~~~~~~Vtli~~~~~~~~~----------~~-~~~i~~--~~~i~~~~~~-----~v~~~~g------~~i~ 185 (227)
|+|+|..|++.+++||+++|++. +.. .+ ..+|.+ +..+.++.++ ++++.++ ++++
T Consensus 158 g~e~A~~l~~~~~~Vtlv~~~~~-~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 158 AVEEALYLSNIASEVHLIHRRDG-FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred HHHHHHHHHhhCCEEEEEEECCc-cCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence 99999999999999999999542 211 11 123443 4567788654 2556543 3689
Q ss_pred ccEEEEccccccccccccccCCcccccc
Q psy810 186 FDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 186 ~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
+|.||+++| ++||. .++.. +++++
T Consensus 237 ~D~vv~a~G-~~p~~--~l~~~-~l~~~ 260 (321)
T PRK10262 237 VAGLFVAIG-HSPNT--AIFEG-QLELE 260 (321)
T ss_pred CCEEEEEeC-CccCh--hHhhc-ccccc
Confidence 999999999 99999 77653 45553
No 28
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.78 E-value=2.3e-18 Score=151.58 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=117.4
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecC-CeeEEE--cCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANE-EITLHY--NLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP---- 113 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~-~~~~~~--~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~---- 113 (227)
.+++++++++|.+++..+ ..+.+... ++..+. ||+||||||+ .|..|++||.+.- ..+......+.
T Consensus 57 ~gv~~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~--~v~~~~~~~~~~~~~ 129 (427)
T TIGR03385 57 RGIDVKTNHEVIEVNDER---QTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLD--IVFTLRNLEDTDAIK 129 (427)
T ss_pred cCCeEEecCEEEEEECCC---CEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCC--CEEEECCHHHHHHHH
Confidence 356777889999887522 34444432 244677 9999999999 8899999996521 12222221111
Q ss_pred ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCCc
Q psy810 114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQDS 175 (227)
Q Consensus 114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~~ 175 (227)
....+++|+|||+|++|+|+|..|++.+.+|+++.+.+..+...++ .+| ..+..+.++..++
T Consensus 130 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 209 (427)
T TIGR03385 130 QYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE 209 (427)
T ss_pred HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC
Confidence 1235789999999999999999999999999999985543222121 133 3355677886654
Q ss_pred --eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 176 --VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 176 --v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
+.+.+|+++++|.+|+|+| ++|++ +++++++++++.
T Consensus 210 ~~v~~~~g~~i~~D~vi~a~G-~~p~~--~~l~~~gl~~~~ 247 (427)
T TIGR03385 210 RVKVFTSGGVYQADMVILATG-IKPNS--ELAKDSGLKLGE 247 (427)
T ss_pred CEEEEcCCCEEEeCEEEECCC-ccCCH--HHHHhcCcccCC
Confidence 3678899999999999999 99999 999999998874
No 29
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.78 E-value=4.1e-18 Score=153.29 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=123.8
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN 120 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 120 (227)
.+++++.+++|.++...+ +.+.+.+.++..+.||++|+|||+ .|+.|++||.+.+.+..++++..++.....+++
T Consensus 280 ~gv~i~~~~~V~~I~~~~---~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~ 354 (515)
T TIGR03140 280 YPIDLMENQRAKKIETED---GLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKD 354 (515)
T ss_pred hCCeEEcCCEEEEEEecC---CeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeEEEeeccChhhcCCCE
Confidence 356888899999887522 467787777778999999999999 778889999755555566666566655567899
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccCC--CceE--EcCCccEEeCC-----ceEEcC---C--
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQIG--DSVV--QKPDIKRLLQD-----SVVFQD---D-- 181 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~~--~~i~--~~~~i~~~~~~-----~v~~~~---g-- 181 (227)
|+|||||++|+|+|..|++.+.+||++++.+.... ..+. .+|. .+..+.++.++ ++++.+ |
T Consensus 355 VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~ 434 (515)
T TIGR03140 355 VAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEE 434 (515)
T ss_pred EEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcE
Confidence 99999999999999999999999999988543211 1111 2344 35567777654 256654 2
Q ss_pred CEEeccEEEEccccccccccccccCCccccccc
Q psy810 182 TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 182 ~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
..+++|.||+|+| ..||+ .|+... ++++.
T Consensus 435 ~~i~~D~vi~a~G-~~Pn~--~~l~~~-~~~~~ 463 (515)
T TIGR03140 435 KQLDLDGVFVQIG-LVPNT--EWLKDA-VELNR 463 (515)
T ss_pred EEEEcCEEEEEeC-CcCCc--hHHhhh-cccCC
Confidence 3589999999999 99999 999765 66653
No 30
>KOG1336|consensus
Probab=99.78 E-value=2.9e-18 Score=147.35 Aligned_cols=199 Identities=16% Similarity=0.129 Sum_probs=143.0
Q ss_pred hhhhhcCCCCCCchhhhh-----hcCCcceEe----eecccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEE
Q psy810 10 SVLTTYNSEALQPIRKLR-----ESQPTNFIS----IAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQS 80 (227)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~----~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vi 80 (227)
.+++..+.+.+.|+++-| .....++.. +--+..++.++++.|++++- ...++.+++|+.+.|++++
T Consensus 100 ~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~-----~~K~l~~~~Ge~~kys~Li 174 (478)
T KOG1336|consen 100 ERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADL-----ASKTLVLGNGETLKYSKLI 174 (478)
T ss_pred cceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeec-----cccEEEeCCCceeecceEE
Confidence 445566667777776622 222222211 11245778999999999875 5678889999999999999
Q ss_pred EccCCCCCCCCCCCCCCCcccceeeecC-CCCCCC-----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810 81 LPSSHNSVPNIPSYEGADLFRGLQMHSH-DYRVPD-----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF 154 (227)
Q Consensus 81 lAtG~~~~p~~p~~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~ 154 (227)
||||+ .|+.|++||.+. +.+++. +..+.. .-.+.+|+++|+|++|+|+|..|...+.+||++++.+-++
T Consensus 175 lATGs--~~~~l~~pG~~~---~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~ 249 (478)
T KOG1336|consen 175 IATGS--SAKTLDIPGVEL---KNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL 249 (478)
T ss_pred EeecC--ccccCCCCCccc---cceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccch
Confidence 99999 899999999863 223322 222221 1126789999999999999999999999999999965444
Q ss_pred cccCCC---------------ceEEcCCccEEeCCc------eEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810 155 KHQIGD---------------SVVQKPDIKRLLQDS------VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 155 ~~~~~~---------------~i~~~~~i~~~~~~~------v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
...+.. ++.+.+.+.++..+. |.+.||+++++|.|++++| .+|++ +|++. +.-++
T Consensus 250 ~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG-~~p~t--~~~~~-g~~~~ 325 (478)
T KOG1336|consen 250 PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG-IKPNT--SFLEK-GILLD 325 (478)
T ss_pred hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec-ccccc--ccccc-cceec
Confidence 332221 445566777776532 8889999999999999999 99999 99997 65555
Q ss_pred cCCCCCCCCCCC
Q psy810 214 MSTPDGPNPTSR 225 (227)
Q Consensus 214 ~~~~~~~~~~~~ 225 (227)
.. |++++..
T Consensus 326 ~~---G~i~V~~ 334 (478)
T KOG1336|consen 326 SK---GGIKVDE 334 (478)
T ss_pred cc---CCEeehh
Confidence 44 6666554
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=99.78 E-value=2.7e-18 Score=155.99 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=100.4
Q ss_pred CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..+.+.+.++ ..+.||+||||||+ .|.+|++||.+... .+....... ....+++++|||+|++|+|+|..|.+
T Consensus 217 ~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~ 291 (561)
T PRK13748 217 QTLIVRLNDGGERVVAFDRCLIATGA--SPAVPPIPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFAR 291 (561)
T ss_pred CEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHH
Confidence 4566665443 47999999999999 89999999976421 122111111 12346899999999999999999999
Q ss_pred ccCeEEEEeecCccccccC------------CCceE--EcCCccEEeC--CceEE-cCCCEEeccEEEEccccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQI------------GDSVV--QKPDIKRLLQ--DSVVF-QDDTSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~------------~~~i~--~~~~i~~~~~--~~v~~-~~g~~i~~D~vi~atG~~~~~~~~ 202 (227)
++.+|||+++. ..+.... ...|+ .+..+.++.. +.+.+ .++.++++|.||+|+| +.||+
T Consensus 292 ~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G-~~pn~-- 367 (561)
T PRK13748 292 LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATG-RAPNT-- 367 (561)
T ss_pred cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccC-CCcCC--
Confidence 99999999983 3332110 11333 3556777753 22322 2334799999999999 99999
Q ss_pred cc--cCCcccccccC
Q psy810 203 TF--LATFSISMAMS 215 (227)
Q Consensus 203 ~~--l~~~gl~~~~~ 215 (227)
.+ |++.|++++..
T Consensus 368 ~~l~l~~~g~~~~~~ 382 (561)
T PRK13748 368 RSLALDAAGVTVNAQ 382 (561)
T ss_pred CCcCchhcCceECCC
Confidence 75 57788888753
No 32
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.77 E-value=1.8e-18 Score=150.01 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=117.6
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC-----CCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV-----PDP 115 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-----~~~ 115 (227)
.+++++++++|.+++. ..+.+.++ +..+.||+||||||+ .|..|++||.+. .+....+.+ ...
T Consensus 71 ~gv~~~~~~~V~~id~-----~~~~v~~~-~~~~~yd~LVlATG~--~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~ 138 (377)
T PRK04965 71 FNLRLFPHTWVTDIDA-----EAQVVKSQ-GNQWQYDKLVLATGA--SAFVPPIPGREL----MLTLNSQQEYRAAETQL 138 (377)
T ss_pred CCCEEECCCEEEEEEC-----CCCEEEEC-CeEEeCCEEEECCCC--CCCCCCCCCCce----EEEECCHHHHHHHHHHh
Confidence 4678888999999875 33456654 457999999999999 889999999653 122111111 111
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCC----ce
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQD----SV 176 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~----~v 176 (227)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+..+...++ .++ .....+.++..+ .+
T Consensus 139 ~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v 218 (377)
T PRK04965 139 RDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRA 218 (377)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEE
Confidence 24689999999999999999999999999999986543322122 123 335667777653 26
Q ss_pred EEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
.+.+|+++++|.||+|+| ..|++ .+++..|++.+.
T Consensus 219 ~~~~g~~i~~D~vI~a~G-~~p~~--~l~~~~gl~~~~ 253 (377)
T PRK04965 219 TLDSGRSIEVDAVIAAAG-LRPNT--ALARRAGLAVNR 253 (377)
T ss_pred EEcCCcEEECCEEEECcC-CCcch--HHHHHCCCCcCC
Confidence 778999999999999999 99999 888888887653
No 33
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.77 E-value=2.5e-18 Score=153.46 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=94.7
Q ss_pred eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+.||+||||||+ +|..|++||.+.. .+.+.+...... .+++++|||+|++|+|+|..|++++.+||++.+ .
T Consensus 140 ~~~~~d~lVIATGs--~p~~p~ipG~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~ 212 (484)
T TIGR01438 140 KIYSAERFLIATGE--RPRYPGIPGAKEL---CITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S 212 (484)
T ss_pred eEEEeCEEEEecCC--CCCCCCCCCccce---eecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c
Confidence 57999999999999 8999999997442 122222222222 357899999999999999999999999999998 4
Q ss_pred ccccccCC-------------CceE--EcCCccEEeC--Cc--eEEcCCC---EEeccEEEEccccccccccccc--cCC
Q psy810 152 VAFKHQIG-------------DSVV--QKPDIKRLLQ--DS--VVFQDDT---SHPFDSIIYCTGAYKYSYKLTF--LAT 207 (227)
Q Consensus 152 ~~~~~~~~-------------~~i~--~~~~i~~~~~--~~--v~~~~g~---~i~~D~vi~atG~~~~~~~~~~--l~~ 207 (227)
..++. ++ .+|. .+..+.++.. +. +++.+++ ++++|.||+|+| +.||+ .+ |++
T Consensus 213 ~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G-~~pn~--~~l~l~~ 288 (484)
T TIGR01438 213 ILLRG-FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIG-RDACT--RKLNLEN 288 (484)
T ss_pred ccccc-cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEec-CCcCC--CcCCccc
Confidence 33321 21 1333 3444555543 22 5565653 699999999999 99999 86 567
Q ss_pred ccccccc
Q psy810 208 FSISMAM 214 (227)
Q Consensus 208 ~gl~~~~ 214 (227)
.|++++.
T Consensus 289 ~gv~~~~ 295 (484)
T TIGR01438 289 VGVKINK 295 (484)
T ss_pred ccceecC
Confidence 7887763
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=99.77 E-value=1.8e-18 Score=154.29 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=98.9
Q ss_pred CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..+.+...++ ..+.||+||||||+ .|..|++||.+... .+...+.... ...+++++|||+|++|+|+|..+.+
T Consensus 135 ~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~ 209 (479)
T PRK14727 135 NTLVVRLHDGGERVLAADRCLIATGS--TPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYAR 209 (479)
T ss_pred CEEEEEeCCCceEEEEeCEEEEecCC--CCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 4566665444 47999999999999 89999999975421 1221111111 2246899999999999999999999
Q ss_pred ccCeEEEEeecCcccccc-----------C-CCceE--EcCCccEEeC--CceEE-cCCCEEeccEEEEccccccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQ-----------I-GDSVV--QKPDIKRLLQ--DSVVF-QDDTSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~-----------~-~~~i~--~~~~i~~~~~--~~v~~-~~g~~i~~D~vi~atG~~~~~~~~ 202 (227)
.|.+||++.+. ..+... + ...|. .+..+.++.. +++.+ .++.++++|.||+|+| +.||+
T Consensus 210 ~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G-~~pn~-- 285 (479)
T PRK14727 210 LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTG-RHANT-- 285 (479)
T ss_pred cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccC-CCCCc--
Confidence 99999999883 332210 0 11333 3456766652 33332 2334689999999999 99999
Q ss_pred cc--cCCccccccc
Q psy810 203 TF--LATFSISMAM 214 (227)
Q Consensus 203 ~~--l~~~gl~~~~ 214 (227)
.+ ++..|++++.
T Consensus 286 ~~l~l~~~g~~~~~ 299 (479)
T PRK14727 286 HDLNLEAVGVTTDT 299 (479)
T ss_pred cCCCchhhCceecC
Confidence 76 4667787764
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.77 E-value=1.5e-18 Score=155.49 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=96.1
Q ss_pred eeEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 71 ITLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 71 ~~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
+..++||+||||||+ .|..|+ +||.+.+ .+.+.+...... .+++++|||+|++|+|+|..|++++.+||++++
T Consensus 140 ~~~i~~d~lIIATGs--~p~~p~~i~G~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 140 EETITAKYILIATGG--RPSIPEDVPGAKEY---SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred ceEEECCEEEEecCC--CCCCCCCCCCccce---eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 457999999999999 888884 8886542 122222222222 357999999999999999999999999999987
Q ss_pred cCccccccCC-------------CceEE--cCCccEEeC--C--ceEEcCCCEEeccEEEEcccccccccccccc--CCc
Q psy810 150 ISVAFKHQIG-------------DSVVQ--KPDIKRLLQ--D--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFL--ATF 208 (227)
Q Consensus 150 ~~~~~~~~~~-------------~~i~~--~~~i~~~~~--~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l--~~~ 208 (227)
...+.. ++ ..|.+ +..+.++.. + .+.+.+|+++++|.||+|+| ++||+ .+| +..
T Consensus 214 -~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~pn~--~~l~l~~~ 288 (499)
T PTZ00052 214 -SIPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATG-RKPDI--KGLNLNAI 288 (499)
T ss_pred -Cccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeC-CCCCc--cccCchhc
Confidence 333321 21 13333 444555643 2 25677888999999999999 99999 876 577
Q ss_pred cccccc
Q psy810 209 SISMAM 214 (227)
Q Consensus 209 gl~~~~ 214 (227)
+++++.
T Consensus 289 g~~~~~ 294 (499)
T PTZ00052 289 GVHVNK 294 (499)
T ss_pred CcEECC
Confidence 888764
No 36
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.77 E-value=1.8e-18 Score=154.09 Aligned_cols=145 Identities=13% Similarity=0.164 Sum_probs=96.5
Q ss_pred CcEEEecCCe--eEEEcCEEEEccCCCCCCC-CCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810 62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPN-IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE 138 (227)
Q Consensus 62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~ 138 (227)
....+...++ ..+.||+||||||+ +|. .|.+++... ..+.+.+...... .+++++|||+|++|+|+|..|.
T Consensus 121 ~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~~---~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~ 194 (471)
T PRK06467 121 NTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQLPFIPHDDP---RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYH 194 (471)
T ss_pred CEEEEecCCCceEEEEcCEEEEeCCC--CCCCCCCCCCCCC---cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHH
Confidence 3455555444 57999999999999 776 344554321 1233322222222 3689999999999999999999
Q ss_pred hccCeEEEEeecCccccc-----------cCCCce--EEcCCccEEeC--Cc--eEEcCC----CEEeccEEEEcccccc
Q psy810 139 KVAKNVFLSHHISVAFKH-----------QIGDSV--VQKPDIKRLLQ--DS--VVFQDD----TSHPFDSIIYCTGAYK 197 (227)
Q Consensus 139 ~~~~~Vtli~~~~~~~~~-----------~~~~~i--~~~~~i~~~~~--~~--v~~~~g----~~i~~D~vi~atG~~~ 197 (227)
+.|.+|||+++.+..+.. .+..++ ..+..+.+++. ++ +.+.++ .++++|.||+|+| ++
T Consensus 195 ~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G-~~ 273 (471)
T PRK06467 195 RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVG-RV 273 (471)
T ss_pred HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeec-cc
Confidence 999999999985543321 111123 33456666652 33 334432 3599999999999 99
Q ss_pred cccccccc--CCcccccccC
Q psy810 198 YSYKLTFL--ATFSISMAMS 215 (227)
Q Consensus 198 ~~~~~~~l--~~~gl~~~~~ 215 (227)
||+ .+| ...+++++..
T Consensus 274 pn~--~~l~~~~~gl~~~~~ 291 (471)
T PRK06467 274 PNG--KLLDAEKAGVEVDER 291 (471)
T ss_pred ccC--CccChhhcCceECCC
Confidence 999 754 6677877643
No 37
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.76 E-value=5.2e-18 Score=148.02 Aligned_cols=161 Identities=10% Similarity=0.080 Sum_probs=116.1
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P 115 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~ 115 (227)
.+++++.++.|..++. ..+.+.+.++..+.||+||||||+ .|+.|++++... . ..+......+.. -
T Consensus 71 ~~i~~~~g~~V~~id~-----~~~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~-~-~v~~~~~~~da~~l~~~~ 141 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR-----DTRELVLTNGESWHWDQLFIATGA--AARPLPLLDALG-E-RCFTLRHAGDAARLREVL 141 (396)
T ss_pred CCCEEEcCCEEEEEEC-----CCCEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCC-C-CEEecCCHHHHHHHHHHh
Confidence 4678888889988875 445666677778999999999999 777777665322 1 112211111211 1
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc---eE
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS---VV 177 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~---v~ 177 (227)
..+++++|||+|.+|+|+|..|.+.+.+||++++.+..+...++ . ++..+..+.++..++ +.
T Consensus 142 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~ 221 (396)
T PRK09754 142 QPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT 221 (396)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEE
Confidence 24789999999999999999999999999999986543322122 1 334456777776432 56
Q ss_pred EcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810 178 FQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 178 ~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
+.+|+++++|.||+|+| ..||+ .++...+++.+
T Consensus 222 l~~g~~i~aD~Vv~a~G-~~pn~--~l~~~~gl~~~ 254 (396)
T PRK09754 222 LQSGETLQADVVIYGIG-ISAND--QLAREANLDTA 254 (396)
T ss_pred ECCCCEEECCEEEECCC-CChhh--HHHHhcCCCcC
Confidence 78899999999999999 99999 88887777654
No 38
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.76 E-value=1.3e-18 Score=159.20 Aligned_cols=136 Identities=16% Similarity=0.086 Sum_probs=93.5
Q ss_pred CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 70 EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 70 ~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
++..+.||+||||||+ .|.+|++++.+.. .++...+.... +..+++++|||+|++|+|+|..+.++|.+||++++
T Consensus 269 ~g~~i~ad~lIIATGS--~P~~P~~~~~~~~--~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~ 343 (659)
T PTZ00153 269 SGKEFKVKNIIIATGS--TPNIPDNIEVDQK--SVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEY 343 (659)
T ss_pred CCEEEECCEEEEcCCC--CCCCCCCCCCCCC--cEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4568999999999999 8888876664331 12322222222 22478999999999999999999999999999998
Q ss_pred cCccccc-----------cC--CCceEE--cCCccEEeCCc----eEE--cC-------C--------CEEeccEEEEcc
Q psy810 150 ISVAFKH-----------QI--GDSVVQ--KPDIKRLLQDS----VVF--QD-------D--------TSHPFDSIIYCT 193 (227)
Q Consensus 150 ~~~~~~~-----------~~--~~~i~~--~~~i~~~~~~~----v~~--~~-------g--------~~i~~D~vi~at 193 (227)
.+..+.. .+ ..+|.+ +..+.++.++. +.+ .+ + .++++|.||+|+
T Consensus 344 ~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAt 423 (659)
T PTZ00153 344 SPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVAT 423 (659)
T ss_pred cCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEE
Confidence 6543321 01 123433 45577775431 332 21 1 268999999999
Q ss_pred cccccccccccc--CCcccccc
Q psy810 194 GAYKYSYKLTFL--ATFSISMA 213 (227)
Q Consensus 194 G~~~~~~~~~~l--~~~gl~~~ 213 (227)
| .+||+ .+| +..+++++
T Consensus 424 G-r~Pnt--~~L~l~~~gi~~~ 442 (659)
T PTZ00153 424 G-RKPNT--NNLGLDKLKIQMK 442 (659)
T ss_pred C-cccCC--ccCCchhcCCccc
Confidence 9 99999 875 56677665
No 39
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.76 E-value=2.2e-18 Score=153.10 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=95.2
Q ss_pred EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810 64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142 (227)
Q Consensus 64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~ 142 (227)
+.+.. ++..+.||+||||||+ . .|++||.....+. .++....... ...+++++|||+|.+|+|+|..|.+.+.
T Consensus 120 ~~v~v-~~~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~ 193 (460)
T PRK06292 120 NTVEV-NGERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGV 193 (460)
T ss_pred CEEEE-CcEEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 33444 4567999999999999 4 5566665322222 2222222212 2357899999999999999999999999
Q ss_pred eEEEEeecCccccc-----------cCCCceEE--cCCccEEeCC---ceEE--cCC--CEEeccEEEEccccccccccc
Q psy810 143 NVFLSHHISVAFKH-----------QIGDSVVQ--KPDIKRLLQD---SVVF--QDD--TSHPFDSIIYCTGAYKYSYKL 202 (227)
Q Consensus 143 ~Vtli~~~~~~~~~-----------~~~~~i~~--~~~i~~~~~~---~v~~--~~g--~~i~~D~vi~atG~~~~~~~~ 202 (227)
+|+++++.+..+.. .+..+|.+ +..+.++..+ .+++ .++ .++++|.||+|+| .+||+
T Consensus 194 ~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G-~~p~~-- 270 (460)
T PRK06292 194 KVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATG-RRPNT-- 270 (460)
T ss_pred cEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccC-CccCC--
Confidence 99999986533221 11112443 4567777532 3443 344 4689999999999 99999
Q ss_pred cc--cCCccccccc
Q psy810 203 TF--LATFSISMAM 214 (227)
Q Consensus 203 ~~--l~~~gl~~~~ 214 (227)
++ ++..+++++.
T Consensus 271 ~~l~l~~~g~~~~~ 284 (460)
T PRK06292 271 DGLGLENTGIELDE 284 (460)
T ss_pred CCCCcHhhCCEecC
Confidence 74 5677887764
No 40
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.76 E-value=5.5e-18 Score=150.59 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=96.9
Q ss_pred CcEEEec-CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceee-ecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFAN-EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQM-HSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~-~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
....+.. +++..+.||+||||||+ .|..| ||.+. .+..+ ++.+..... ..+++++|||+|++|+|+|..|.+
T Consensus 120 ~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~--pg~~~-~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~ 193 (462)
T PRK06416 120 NTVRVMTEDGEQTYTAKNIILATGS--RPREL--PGIEI-DGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYAS 193 (462)
T ss_pred CEEEEecCCCcEEEEeCEEEEeCCC--CCCCC--CCCCC-CCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHH
Confidence 3455543 23368999999999999 77654 45432 22223 222222222 246899999999999999999999
Q ss_pred ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC--c--eEEcCC---CEEeccEEEEcccccc
Q psy810 140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD--S--VVFQDD---TSHPFDSIIYCTGAYK 197 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~--~--v~~~~g---~~i~~D~vi~atG~~~ 197 (227)
.+.+||++++.+..+.. ++ . ++..+..+.++..+ + +.+.+| +++++|.||+|+| .+
T Consensus 194 ~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G-~~ 271 (462)
T PRK06416 194 LGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG-RR 271 (462)
T ss_pred cCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC-Cc
Confidence 99999999986543321 11 1 33445567777643 3 444555 5689999999999 99
Q ss_pred cccccccc--CCcccccc
Q psy810 198 YSYKLTFL--ATFSISMA 213 (227)
Q Consensus 198 ~~~~~~~l--~~~gl~~~ 213 (227)
|++ .++ +..+++++
T Consensus 272 p~~--~~l~l~~~gl~~~ 287 (462)
T PRK06416 272 PNT--ENLGLEELGVKTD 287 (462)
T ss_pred cCC--CCCCchhcCCeec
Confidence 999 875 57777765
No 41
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.76 E-value=3.5e-18 Score=151.75 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=98.5
Q ss_pred CcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810 62 KCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 62 ~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~ 140 (227)
....+..+++ ..+.||+||||||+ .|..|++++.+.. ..++......... .+++++|||+|++|+|+|..+.+.
T Consensus 118 ~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~~~~~~~--~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~ 192 (458)
T PRK06912 118 HRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPFAPFDGK--WIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRL 192 (458)
T ss_pred CEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCCCCCCCC--eEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHc
Confidence 4445554443 57999999999999 7777777765321 1233322222222 368999999999999999999999
Q ss_pred cCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCCc--eEEc-CCC--EEeccEEEEcccccccccc
Q psy810 141 AKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQDS--VVFQ-DDT--SHPFDSIIYCTGAYKYSYK 201 (227)
Q Consensus 141 ~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~~--v~~~-~g~--~i~~D~vi~atG~~~~~~~ 201 (227)
+.+||++++.+..+... + .. ++..+..+.+++.+. +.+. +|+ ++++|.||+|+| .+||+
T Consensus 193 g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G-~~p~~- 270 (458)
T PRK06912 193 GTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVG-RKPRV- 270 (458)
T ss_pred CCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecC-CccCC-
Confidence 99999999865433211 1 01 334455677776432 4443 443 589999999999 99999
Q ss_pred ccc--cCCccccccc
Q psy810 202 LTF--LATFSISMAM 214 (227)
Q Consensus 202 ~~~--l~~~gl~~~~ 214 (227)
.+ ++..|++++.
T Consensus 271 -~~l~l~~~gv~~~~ 284 (458)
T PRK06912 271 -QQLNLEKAGVQFSN 284 (458)
T ss_pred -CCCCchhcCceecC
Confidence 75 4566777654
No 42
>KOG0405|consensus
Probab=99.76 E-value=3.4e-18 Score=141.59 Aligned_cols=204 Identities=14% Similarity=0.163 Sum_probs=134.1
Q ss_pred CCCCchhhhhhhcCCCCCCchhhhhhcCCcc--eEeee------------ccc---ceeEEeCceEEEEEEeeCCC--Cc
Q psy810 3 LTPSCLPSVLTTYNSEALQPIRKLRESQPTN--FISIA------------FIP---CIEIKFGSSWAEIEKFSVPT--KC 63 (227)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~------------~~~---~~~i~~~~~V~~i~~~~~~~--~~ 63 (227)
||.||+|.|+.-|++...+.+.+-....... ..+++ .|. ..+..-++.|.-|+.+..-. ..
T Consensus 60 Vn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~ 139 (478)
T KOG0405|consen 60 VNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE 139 (478)
T ss_pred EeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCc
Confidence 6899999999999988666554433221110 00000 000 01112234455454322111 22
Q ss_pred EEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810 64 LHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA 141 (227)
Q Consensus 64 ~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~ 141 (227)
-+|...++ ..+.+++++||||. +|.+|.+||.+. .+.+..+.+.++ .+++++|||+|++|+|+|..++.+|
T Consensus 140 v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLg 212 (478)
T KOG0405|consen 140 VEVEVNDGTKIVYTAKHILIATGG--RPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLG 212 (478)
T ss_pred eEEEecCCeeEEEecceEEEEeCC--ccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcC
Confidence 34444444 35899999999999 999999999754 355555556655 4789999999999999999999999
Q ss_pred CeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--Cc---eEEcCCCEEeccEEEEcccccccccc
Q psy810 142 KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--DS---VVFQDDTSHPFDSIIYCTGAYKYSYK 201 (227)
Q Consensus 142 ~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~~---v~~~~g~~i~~D~vi~atG~~~~~~~ 201 (227)
.++.|+-|.+..++. +++ +++..+.+.++.. ++ +..+.|....+|.++||+| ..||++
T Consensus 213 sethlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG-R~Pntk 290 (478)
T KOG0405|consen 213 SETHLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG-RKPNTK 290 (478)
T ss_pred CeeEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEec-CCCCcc
Confidence 999999996543332 321 3344555665543 22 5556665567999999999 999994
Q ss_pred ccccCCcccccccC
Q psy810 202 LTFLATFSISMAMS 215 (227)
Q Consensus 202 ~~~l~~~gl~~~~~ 215 (227)
.--|+..|++++.+
T Consensus 291 ~L~le~vGVk~~~~ 304 (478)
T KOG0405|consen 291 GLNLENVGVKTDKN 304 (478)
T ss_pred cccchhcceeeCCC
Confidence 44567888998876
No 43
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.75 E-value=1.5e-17 Score=147.69 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=100.3
Q ss_pred CcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCC-CCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYE-GADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..+.+...++ ..+.||+||+|||+ .|+.|++| +.+. ...++..+.... ...+++++|||+|.+|+|+|..|.+
T Consensus 117 ~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~ 191 (461)
T TIGR01350 117 GTVLVTGENGEETLTAKNIIIATGS--RPRSLPGPFDFDG--EVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFAS 191 (461)
T ss_pred CEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCCCCCCCC--ceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 4455655443 57999999999999 88888776 3221 112222222221 2246899999999999999999999
Q ss_pred ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cce--EEcCC--CEEeccEEEEccccccc
Q psy810 140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DSV--VFQDD--TSHPFDSIIYCTGAYKY 198 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~v--~~~~g--~~i~~D~vi~atG~~~~ 198 (227)
.+.+||++.+.+..+.. +. . ++.....+.+++. +++ .+.+| .++++|.+|+|+| +.|
T Consensus 192 ~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G-~~p 269 (461)
T TIGR01350 192 LGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVG-RKP 269 (461)
T ss_pred cCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecC-Ccc
Confidence 99999999986543221 11 1 3444566777753 333 34466 4789999999999 999
Q ss_pred ccccc--ccCCcccccccC
Q psy810 199 SYKLT--FLATFSISMAMS 215 (227)
Q Consensus 199 ~~~~~--~l~~~gl~~~~~ 215 (227)
++ . +++..+++++..
T Consensus 270 ~~--~~l~~~~~gl~~~~~ 286 (461)
T TIGR01350 270 NT--EGLGLENLGVELDER 286 (461)
T ss_pred cC--CCCCcHhhCceECCC
Confidence 99 7 678888887753
No 44
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.75 E-value=1.1e-17 Score=148.75 Aligned_cols=143 Identities=10% Similarity=0.149 Sum_probs=97.2
Q ss_pred cEEEecCC--eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810 63 CLHFANEE--ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 63 ~~~v~~~~--~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~ 140 (227)
...+...+ ...+.||+||||||+ .|..| ||.+. ....+.+.+.... ...+++++|||+|++|+|+|..|+++
T Consensus 121 ~v~v~~~~g~~~~~~~d~lViATGs--~p~~~--pg~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~ 194 (466)
T PRK07818 121 TLEVDLNDGGTETVTFDNAIIATGS--STRLL--PGTSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNY 194 (466)
T ss_pred EEEEEecCCCeeEEEcCEEEEeCCC--CCCCC--CCCCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHc
Confidence 34454433 357999999999999 77654 55432 1223333322112 22468999999999999999999999
Q ss_pred cCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCCc----eEEc--CCC--EEeccEEEEccccccc
Q psy810 141 AKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQDS----VVFQ--DDT--SHPFDSIIYCTGAYKY 198 (227)
Q Consensus 141 ~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~~----v~~~--~g~--~i~~D~vi~atG~~~~ 198 (227)
+.+|+++++.+..+... + .. ++..+..+.++.+++ +.+. +|+ ++++|.||+|+| ++|
T Consensus 195 G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G-~~p 273 (466)
T PRK07818 195 GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG-FAP 273 (466)
T ss_pred CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcC-ccc
Confidence 99999999855433211 0 11 344456777776432 3443 664 689999999999 999
Q ss_pred cccccc--cCCccccccc
Q psy810 199 SYKLTF--LATFSISMAM 214 (227)
Q Consensus 199 ~~~~~~--l~~~gl~~~~ 214 (227)
|+ .+ |+..|++++.
T Consensus 274 n~--~~l~l~~~g~~~~~ 289 (466)
T PRK07818 274 RV--EGYGLEKTGVALTD 289 (466)
T ss_pred CC--CCCCchhcCcEECC
Confidence 99 75 5788888764
No 45
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.74 E-value=1.5e-17 Score=147.95 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=95.0
Q ss_pred cEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810 63 CLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 63 ~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~ 140 (227)
.+.+.+.++ ..+.||+||||||+ +|. ++||.+......++........ ..+++++|||+|++|+|+|..+.+.
T Consensus 122 ~v~v~~~~g~~~~~~~d~lVIATGs--~p~--~ipg~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~ 196 (466)
T PRK06115 122 KVVVKAEDGSETQLEAKDIVIATGS--EPT--PLPGVTIDNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRL 196 (466)
T ss_pred EEEEEcCCCceEEEEeCEEEEeCCC--CCC--CCCCCCCCCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHc
Confidence 345554444 47999999999999 664 4566532111123322222222 2479999999999999999999999
Q ss_pred cCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cce--EEc---CC--CEEeccEEEEccccc
Q psy810 141 AKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DSV--VFQ---DD--TSHPFDSIIYCTGAY 196 (227)
Q Consensus 141 ~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~v--~~~---~g--~~i~~D~vi~atG~~ 196 (227)
|.+||++++.+..+.. ++ . ++..+..+.++.+ +++ .+. +| ..+++|.||+|+| +
T Consensus 197 G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G-~ 274 (466)
T PRK06115 197 GAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG-R 274 (466)
T ss_pred CCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC-C
Confidence 9999999985543322 21 1 3344556777764 233 332 23 4689999999999 9
Q ss_pred cccccccc--cCCccccccc
Q psy810 197 KYSYKLTF--LATFSISMAM 214 (227)
Q Consensus 197 ~~~~~~~~--l~~~gl~~~~ 214 (227)
+||+ .+ ++..+++++.
T Consensus 275 ~pn~--~~l~~~~~g~~~~~ 292 (466)
T PRK06115 275 RPYT--QGLGLETVGLETDK 292 (466)
T ss_pred cccc--ccCCcccccceeCC
Confidence 9999 75 4566666653
No 46
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.5e-18 Score=148.25 Aligned_cols=134 Identities=25% Similarity=0.401 Sum_probs=110.4
Q ss_pred CCCCCchhhhhhcCCcceEeeecccceeEEeCceEEEEEEeeCCCCcEEEecCCeeE--EEcCEEEEccCCCCCCCCCCC
Q psy810 17 SEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITL--HYNLLQSLPSSHNSVPNIPSY 94 (227)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~--~~~~~vilAtG~~~~p~~p~~ 94 (227)
.+.+++...++......+..|+.+. .+.+++.|..++ ++.+...|+|+++++.. +.+|+||+|||.++.|++|++
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~--~i~~~~~v~~~~-~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~ 151 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRF--QIRFNTRVEVAD-WDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF 151 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCcee--EEEcccceEEEE-ecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC
Confidence 4556655556665555555655544 555666666644 55566799999887755 559999999999999999999
Q ss_pred CCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 95 EGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 95 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
+|.+.|.+..+|+.+|.+..+++||+|+|||+|+||+++|..|.+.+++|||+.|++..
T Consensus 152 ~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 152 AGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999997643
No 47
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.74 E-value=1.1e-17 Score=143.98 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=118.1
Q ss_pred ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC-----------CCCCCCCC
Q psy810 49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD-----------YRVPDPFR 117 (227)
Q Consensus 49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~-----------~~~~~~~~ 117 (227)
.+|.+|+. +..+|.+.++..+.||++|+|+|+ .++.+.+||+.++....-...+ +.......
T Consensus 78 ~~V~~ID~-----~~k~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~ 150 (405)
T COG1252 78 GEVTDIDR-----DAKKVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE 150 (405)
T ss_pred EEEEEEcc-----cCCEEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 67788776 667888888778999999999999 8899999997654211000000 01111111
Q ss_pred ----CCeEEEEccCccHHHHHHHHHhccC-------------eEEEEeecCccccccCCC---------------ceEEc
Q psy810 118 ----DQNVLLVGFGPSGVDIAMDIEKVAK-------------NVFLSHHISVAFKHQIGD---------------SVVQK 165 (227)
Q Consensus 118 ----~~~v~VvGgG~~g~e~a~~l~~~~~-------------~Vtli~~~~~~~~~~~~~---------------~i~~~ 165 (227)
-.+++|+|||++|+|+|.+|..+.. +|+|+++.+..+ ..++. ++..+
T Consensus 151 ~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~ 229 (405)
T COG1252 151 DDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLG 229 (405)
T ss_pred cccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 1379999999999999999987632 899999955433 33432 55667
Q ss_pred CCccEEeCCceEEcCCCE-EeccEEEEccccccccccccccCC-cccccccCCCCCCCCCCC
Q psy810 166 PDIKRLLQDSVVFQDDTS-HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAMSTPDGPNPTSR 225 (227)
Q Consensus 166 ~~i~~~~~~~v~~~~g~~-i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~ 225 (227)
+.|+++++++|++++|.. |++|.+|||+| .+++ +++.+ .+++.++. |.+.+.+
T Consensus 230 ~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaG-v~a~---~~~~~l~~~e~dr~---Grl~V~~ 284 (405)
T COG1252 230 TPVTEVTPDGVTLKDGEEEIPADTVVWAAG-VRAS---PLLKDLSGLETDRR---GRLVVNP 284 (405)
T ss_pred CceEEECCCcEEEccCCeeEecCEEEEcCC-CcCC---hhhhhcChhhhccC---CCEEeCC
Confidence 889999999999999995 99999999999 9998 68888 47776753 4444443
No 48
>KOG0404|consensus
Probab=99.74 E-value=3.7e-18 Score=133.71 Aligned_cols=156 Identities=16% Similarity=0.264 Sum_probs=116.5
Q ss_pred ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCC-C-cccceeeecCCCCCCCC--CCCCeEEEE
Q psy810 49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGA-D-LFRGLQMHSHDYRVPDP--FRDQNVLLV 124 (227)
Q Consensus 49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~-~-~~~~~~~~~~~~~~~~~--~~~~~v~Vv 124 (227)
..|.+++. ....|.+.++.+ ...+|.||+|||+ ..++..+||. + .||++.+..|..||... +++|..+||
T Consensus 90 EtVskv~~---sskpF~l~td~~-~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVI 163 (322)
T KOG0404|consen 90 ETVSKVDL---SSKPFKLWTDAR-PVTADAVILATGA--SAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVI 163 (322)
T ss_pred eehhhccc---cCCCeEEEecCC-ceeeeeEEEeccc--ceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEE
Confidence 34444443 337799998775 7999999999999 5566677765 3 48999999999999876 899999999
Q ss_pred ccCccHHHHHHHHHhccCeEEEEeecCccccc--cCCCceEEcCCccEE--------eCC-----ceEE-----cCCCEE
Q psy810 125 GFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH--QIGDSVVQKPDIKRL--------LQD-----SVVF-----QDDTSH 184 (227)
Q Consensus 125 GgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~--~~~~~i~~~~~i~~~--------~~~-----~v~~-----~~g~~i 184 (227)
|||.+++|-|.+|...+++|++++|++ .|+. .|..+...+++|.-+ .++ ++.+ .+-+.+
T Consensus 164 GGGDsA~EEA~fLtkyaskVyii~Rrd-~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl 242 (322)
T KOG0404|consen 164 GGGDSAMEEALFLTKYASKVYIIHRRD-HFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDL 242 (322)
T ss_pred cCcHHHHHHHHHHHhhccEEEEEEEhh-hhhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCccccc
Confidence 999999999999999999999999954 4432 122222222222221 122 2332 233468
Q ss_pred eccEEEEccccccccccccccCCcccccccC
Q psy810 185 PFDSIIYCTGAYKYSYKLTFLATFSISMAMS 215 (227)
Q Consensus 185 ~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~ 215 (227)
+++-+++++| ..|++ .||+. .++++.+
T Consensus 243 ~v~GlFf~IG-H~Pat--~~l~g-qve~d~~ 269 (322)
T KOG0404|consen 243 PVSGLFFAIG-HSPAT--KFLKG-QVELDED 269 (322)
T ss_pred ccceeEEEec-CCchh--hHhcC-ceeeccC
Confidence 9999999999 99999 99997 7888875
No 49
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.74 E-value=9.5e-18 Score=148.31 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=115.3
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEec-CCeeEEE--cCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC---
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEITLHY--NLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--- 114 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~~~~~--~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--- 114 (227)
.+++++++++|.+|+..+ ....+.. .++..+. ||+||+|||+ +|..|++||.+.- ..++...+.+..
T Consensus 69 ~gv~~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~--~v~~~~~~~~~~~l~ 141 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKN---KTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLE--NVYTLKSMEDGLALK 141 (444)
T ss_pred CCCeEEecCEEEEEECCC---CEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCC--CEEEECCHHHHHHHH
Confidence 356788889999987522 3444433 2244555 9999999999 8899999987531 123332222211
Q ss_pred ----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc
Q psy810 115 ----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS 175 (227)
Q Consensus 115 ----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~ 175 (227)
...+++|+|+|+|++|+|+|..+.+.+.+|+++.+.+..+...++ . ++.....+.++.+++
T Consensus 142 ~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~ 221 (444)
T PRK09564 142 ELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED 221 (444)
T ss_pred HHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCC
Confidence 234789999999999999999999999999999885543322121 1 334456677776443
Q ss_pred ---eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 176 ---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 176 ---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
....++.++++|.+|+|+| +.|++ +++++.|++++.
T Consensus 222 ~~~~v~~~~~~i~~d~vi~a~G-~~p~~--~~l~~~gl~~~~ 260 (444)
T PRK09564 222 KVEGVVTDKGEYEADVVIVATG-VKPNT--EFLEDTGLKTLK 260 (444)
T ss_pred cEEEEEeCCCEEEcCEEEECcC-CCcCH--HHHHhcCccccC
Confidence 2234566899999999999 99999 999999988764
No 50
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.74 E-value=8.1e-18 Score=148.03 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=110.0
Q ss_pred eCceEEEEEEeeCCCCcEEEec--------CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC------
Q psy810 47 FGSSWAEIEKFSVPTKCLHFAN--------EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV------ 112 (227)
Q Consensus 47 ~~~~V~~i~~~~~~~~~~~v~~--------~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~------ 112 (227)
...+|.+|+..+ ....+.. +++..+.||+||||||+ .|..|++||.++. .+..+.+.+
T Consensus 80 i~~~V~~Id~~~---~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~e~---~~~~~~~~~a~~~~~ 151 (424)
T PTZ00318 80 LRAVVYDVDFEE---KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVEER---AFFLKEVNHARGIRK 151 (424)
T ss_pred EEEEEEEEEcCC---CEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHHHc---CCCCCCHHHHHHHHH
Confidence 346788877522 3343311 45668999999999999 8888899997542 111111111
Q ss_pred ---------------C-CCCCCCeEEEEccCccHHHHHHHHHhc--------------cCeEEEEeecCccccccCC---
Q psy810 113 ---------------P-DPFRDQNVLLVGFGPSGVDIAMDIEKV--------------AKNVFLSHHISVAFKHQIG--- 159 (227)
Q Consensus 113 ---------------~-~~~~~~~v~VvGgG~~g~e~a~~l~~~--------------~~~Vtli~~~~~~~~~~~~--- 159 (227)
. ...+.++++|||||.+|+|+|..|... +.+|||+++.+..+. .++
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~ 230 (424)
T PTZ00318 152 RIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQAL 230 (424)
T ss_pred HHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHH
Confidence 0 011235899999999999999999863 578999998654432 222
Q ss_pred ----------C--ceEEcCCccEEeCCceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 160 ----------D--SVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 160 ----------~--~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
. ++..+..|.++.++.+++++|+++++|.+|+|+| .+|+ ++++.++++++.
T Consensus 231 ~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G-~~~~---~~~~~~~l~~~~ 293 (424)
T PTZ00318 231 RKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTG-VGPG---PLTKQLKVDKTS 293 (424)
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccC-CCCc---chhhhcCCcccC
Confidence 1 3444667889988889999999999999999999 9997 588888887764
No 51
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.73 E-value=2.4e-17 Score=146.95 Aligned_cols=145 Identities=10% Similarity=0.079 Sum_probs=95.8
Q ss_pred CcEEEec--CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 62 KCLHFAN--EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 62 ~~~~v~~--~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
+.|++.. +++..++||+||||||+ .|..|+..+. .+..++.+.........+++|+|||+|++|+|+|..+.+
T Consensus 130 ~~~~v~v~~~~~~~~~~d~lViATGs--~p~~~p~~~~---~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~ 204 (475)
T PRK06327 130 AGYEIKVTGEDETVITAKHVIIATGS--EPRHLPGVPF---DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR 204 (475)
T ss_pred CCCEEEEecCCCeEEEeCEEEEeCCC--CCCCCCCCCC---CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH
Confidence 3566654 33458999999999999 6654432221 222233222111222347899999999999999999999
Q ss_pred ccCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCC--c--eEEcC--C--CEEeccEEEEcccccc
Q psy810 140 VAKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQD--S--VVFQD--D--TSHPFDSIIYCTGAYK 197 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~--~--v~~~~--g--~~i~~D~vi~atG~~~ 197 (227)
++.+||++++.+..+... + .. ++..+..|.++..+ + +.+.+ | ..+++|.||+|+| ++
T Consensus 205 ~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G-~~ 283 (475)
T PRK06327 205 LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIG-RV 283 (475)
T ss_pred cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccC-Cc
Confidence 999999999855332210 1 11 33345567777643 2 44444 3 4689999999999 99
Q ss_pred ccccccc--cCCccccccc
Q psy810 198 YSYKLTF--LATFSISMAM 214 (227)
Q Consensus 198 ~~~~~~~--l~~~gl~~~~ 214 (227)
|++ .+ ++..+++++.
T Consensus 284 p~~--~~l~~~~~g~~~~~ 300 (475)
T PRK06327 284 PNT--DGLGLEAVGLKLDE 300 (475)
T ss_pred cCC--CCCCcHhhCceeCC
Confidence 999 84 4567777764
No 52
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.73 E-value=6.6e-17 Score=144.10 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=90.3
Q ss_pred cEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 63 CLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 63 ~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
.+.+.+.++ ..+.||+||||||+ .|..|+ +... .+. .++..+...... .+++++|||+|++|+|+|..|++
T Consensus 128 ~~~v~~~~g~~~~~~~d~lViATGs--~p~~~p--~~~~-~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~ 201 (472)
T PRK05976 128 TVSVETETGENEMIIPENLLIATGS--RPVELP--GLPF-DGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLAD 201 (472)
T ss_pred EEEEEeCCCceEEEEcCEEEEeCCC--CCCCCC--CCCC-CCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHH
Confidence 567766554 67999999999999 776443 2211 111 233222222222 36899999999999999999999
Q ss_pred ccCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEe---CCce---EEcCCC--EEeccEEEEcccccc
Q psy810 140 VAKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLL---QDSV---VFQDDT--SHPFDSIIYCTGAYK 197 (227)
Q Consensus 140 ~~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~---~~~v---~~~~g~--~i~~D~vi~atG~~~ 197 (227)
.+.+|||+++.+..+... + .. ++..++.+.++. .+++ .+.+|. ++++|.+|+|+| .+
T Consensus 202 ~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G-~~ 280 (472)
T PRK05976 202 FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG-RR 280 (472)
T ss_pred cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC-Cc
Confidence 999999999855332210 1 11 334455677775 3443 234664 589999999999 99
Q ss_pred cccccccc
Q psy810 198 YSYKLTFL 205 (227)
Q Consensus 198 ~~~~~~~l 205 (227)
|++ .+|
T Consensus 281 p~~--~~l 286 (472)
T PRK05976 281 PNT--EGI 286 (472)
T ss_pred cCC--CCC
Confidence 999 764
No 53
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.72 E-value=4.1e-17 Score=129.30 Aligned_cols=107 Identities=29% Similarity=0.403 Sum_probs=80.9
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ 119 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~ 119 (227)
+.+++++++++|.++++.+ +.|.+++.++..+.+|+||+|||..+.|+.|++|| ..+. ..+|+..+.+..++.++
T Consensus 94 ~~~l~i~~~~~V~~v~~~~---~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k 168 (203)
T PF13738_consen 94 RFGLEIRFNTRVESVRRDG---DGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGK 168 (203)
T ss_dssp HTTGGEETS--EEEEEEET---TTEEEEETTS-EEEEEEEEE---SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTS
T ss_pred hcCcccccCCEEEEEEEec---cEEEEEEEecceeeeeeEEEeeeccCCCCcccccc-cccc-ceEehhhcCChhhcCCC
Confidence 3455799999999999764 56999999888899999999999988999999999 1122 67899889888889999
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||+|.||+|+|..|.+.+++|+|++|++
T Consensus 169 ~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 169 RVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp EEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 99999999999999999999999999999964
No 54
>KOG1335|consensus
Probab=99.71 E-value=8.9e-17 Score=134.70 Aligned_cols=213 Identities=11% Similarity=0.120 Sum_probs=126.1
Q ss_pred CCCCchhhhhhhcCCCCCCchhh-hhhcCCcce--Eeee--------------cccceeEEe-CceEEEEEEeeCCCCc-
Q psy810 3 LTPSCLPSVLTTYNSEALQPIRK-LRESQPTNF--ISIA--------------FIPCIEIKF-GSSWAEIEKFSVPTKC- 63 (227)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~-l~~~~~~~~--~~~~--------------~~~~~~i~~-~~~V~~i~~~~~~~~~- 63 (227)
||.||||||.+++++-.|+...- ..+.--.+. .+++ +..++.-.| ..+|+-+..+..-.+.
T Consensus 79 LnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~ 158 (506)
T KOG1335|consen 79 LNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158 (506)
T ss_pred eeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc
Confidence 79999999999999988865543 111100000 0100 000111111 1334433332221122
Q ss_pred -EEEecC--CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810 64 -LHFANE--EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 64 -~~v~~~--~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~ 140 (227)
-.+... ....+.++++|+|||+ ..+++||+.--+.+++.+.--.+... .+++++|+|+|.+|+|++.-+.++
T Consensus 159 ~V~v~k~dg~~~ii~aKnIiiATGS----eV~~~PGI~IDekkIVSStgALsL~~-vPk~~~viG~G~IGLE~gsV~~rL 233 (506)
T KOG1335|consen 159 KVSVKKIDGEDQIIKAKNIIIATGS----EVTPFPGITIDEKKIVSSTGALSLKE-VPKKLTVIGAGYIGLEMGSVWSRL 233 (506)
T ss_pred eEEEeccCCCceEEeeeeEEEEeCC----ccCCCCCeEecCceEEecCCccchhh-CcceEEEEcCceeeeehhhHHHhc
Confidence 223222 2368999999999999 45577887432334444432333333 579999999999999999999999
Q ss_pred cCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCCc-----eEEc---CC--CEEeccEEEEcccc
Q psy810 141 AKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQDS-----VVFQ---DD--TSHPFDSIIYCTGA 195 (227)
Q Consensus 141 ~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~~-----v~~~---~g--~~i~~D~vi~atG~ 195 (227)
|++||+++.-+. +-..++. ++.+.+.+...+.++ +.+. +| .+++||.+++|+|
T Consensus 234 GseVT~VEf~~~-i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG- 311 (506)
T KOG1335|consen 234 GSEVTVVEFLDQ-IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG- 311 (506)
T ss_pred CCeEEEEEehhh-hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc-
Confidence 999999987433 2222221 445566666665432 3332 23 3489999999999
Q ss_pred ccccccccccCCcccccccCCCCCCCCCCC
Q psy810 196 YKYSYKLTFLATFSISMAMSTPDGPNPTSR 225 (227)
Q Consensus 196 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 225 (227)
.+|=++.--|++.|+++|. .+-+++..
T Consensus 312 RrP~t~GLgle~iGi~~D~---r~rv~v~~ 338 (506)
T KOG1335|consen 312 RRPFTEGLGLEKIGIELDK---RGRVIVNT 338 (506)
T ss_pred CcccccCCChhhccccccc---ccceeccc
Confidence 7776633345677777754 35555444
No 55
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-16 Score=130.63 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=129.4
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV 121 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 121 (227)
.+++.--.+..++++.....+..++.+.+|-.++++.+|+|||+.+ +-..+||.++|..+.+.||..|+..-+.||+|
T Consensus 280 ~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW--Rn~nvPGE~e~rnKGVayCPHCDGPLF~gK~V 357 (520)
T COG3634 280 DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW--RNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRV 357 (520)
T ss_pred CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch--hcCCCCchHHHhhCCeeeCCCCCCcccCCceE
Confidence 4456666777888876666678899999999999999999999954 44589999999999999999999999999999
Q ss_pred EEEccCccHHHHHHHHHhccCeEEEEeecCccccc------cC--CCceEEcC--CccEEeCC-----ceEEc---CCC-
Q psy810 122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH------QI--GDSVVQKP--DIKRLLQD-----SVVFQ---DDT- 182 (227)
Q Consensus 122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~--~~~i~~~~--~i~~~~~~-----~v~~~---~g~- 182 (227)
+|||||+||+|.|..|+....+||+++-. +.+.. .+ -.++.+.. .-+++.++ ++... +|.
T Consensus 358 AVIGGGNSGvEAAIDLAGiv~hVtllEF~-~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 358 AVIGGGNSGVEAAIDLAGIVEHVTLLEFA-PELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred EEECCCcchHHHHHhHHhhhheeeeeecc-hhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 99999999999999999999999999873 33321 11 12444333 33455554 24443 343
Q ss_pred -EEeccEEEEccccccccccccccCCcccccccC
Q psy810 183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS 215 (227)
Q Consensus 183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~ 215 (227)
.+.-+-|++-+| ..||+ .||+.. +++++.
T Consensus 437 ~~l~LeGvFVqIG-L~PNT--~WLkg~-vel~~r 466 (520)
T COG3634 437 HHLELEGVFVQIG-LLPNT--EWLKGA-VELNRR 466 (520)
T ss_pred eEEEeeeeEEEEe-cccCh--hHhhch-hhcCcC
Confidence 367788999999 99999 999987 777754
No 56
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.67 E-value=3.2e-16 Score=135.16 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=108.4
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccc--eeee-cCC----CCC-C
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRG--LQMH-SHD----YRV-P 113 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~--~~~~-~~~----~~~-~ 113 (227)
++++.. .+|.+|+. +...|.+++++.+.||+||||||+ .|..|++||..+..- ..+. ... ... .
T Consensus 68 gv~~~~-~~v~~id~-----~~~~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (364)
T TIGR03169 68 GARFVI-AEATGIDP-----DRRKVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAADLAVPVKPIENFLARWEALLESA 139 (364)
T ss_pred CCEEEE-EEEEEEec-----ccCEEEECCCCcccccEEEEccCC--CCCCCCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence 345544 57788765 345677778878999999999999 888899998533100 0000 000 000 0
Q ss_pred -CCCCCCeEEEEccCccHHHHHHHHHhc----c--CeEEEEeecCccccccCC-------------Cce--EEcCCccEE
Q psy810 114 -DPFRDQNVLLVGFGPSGVDIAMDIEKV----A--KNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRL 171 (227)
Q Consensus 114 -~~~~~~~v~VvGgG~~g~e~a~~l~~~----~--~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~ 171 (227)
....+++++|+|+|.+|+|+|..|.+. + .+|+|+ +.+..+.. ++ .+| ..+..+.++
T Consensus 140 ~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 217 (364)
T TIGR03169 140 DAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRG 217 (364)
T ss_pred hcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEE
Confidence 012357999999999999999999853 3 489999 43332221 21 133 345568888
Q ss_pred eCCceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 172 LQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 172 ~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
+++.+.+.+|.++++|.+|+|+| .+|+. +|...+++++.
T Consensus 218 ~~~~v~~~~g~~i~~D~vi~a~G-~~p~~---~l~~~gl~~~~ 256 (364)
T TIGR03169 218 PDGALILADGRTLPADAILWATG-ARAPP---WLAESGLPLDE 256 (364)
T ss_pred cCCeEEeCCCCEEecCEEEEccC-CChhh---HHHHcCCCcCC
Confidence 77789999999999999999999 99984 66767777654
No 57
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.67 E-value=1.2e-15 Score=138.51 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=116.3
Q ss_pred eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEE
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVL 122 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ 122 (227)
+++ ++++|..++..+ +.+.+.+.++ .+.+++||+|||+ .|+.|++||.+.+.+..++++..++...+.+++|+
T Consensus 75 v~~-~~~~V~~i~~~~---~~~~V~~~~g-~~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~Vv 147 (555)
T TIGR03143 75 VKF-LQAEVLDVDFDG---DIKTIKTARG-DYKTLAVLIATGA--SPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVF 147 (555)
T ss_pred CEE-eccEEEEEEecC---CEEEEEecCC-EEEEeEEEECCCC--ccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEE
Confidence 344 367777776422 4567777665 5899999999999 78899999976666667777767776667799999
Q ss_pred EEccCccHHHHHHHHHhccCeEEEEeecCccccc-------cC-CCce--EEcCCccEEeCCc----eEE---cCCCEE-
Q psy810 123 LVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-------QI-GDSV--VQKPDIKRLLQDS----VVF---QDDTSH- 184 (227)
Q Consensus 123 VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-------~~-~~~i--~~~~~i~~~~~~~----v~~---~~g~~i- 184 (227)
|||||++|+|+|..|.+.+.+||+++|.+. +.. .+ ..+| ..+..|.++.+++ +.+ .+|+..
T Consensus 148 VIGgG~~g~E~A~~L~~~g~~Vtli~~~~~-~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~ 226 (555)
T TIGR03143 148 VIGGGFAAAEEAVFLTRYASKVTVIVREPD-FTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITE 226 (555)
T ss_pred EECCCHHHHHHHHHHHccCCEEEEEEeCCc-cccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEE
Confidence 999999999999999999999999999543 210 01 1233 3456677876543 222 356543
Q ss_pred ---eccE----EEEccccccccccccccCCccccccc
Q psy810 185 ---PFDS----IIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 185 ---~~D~----vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
++|. ||+|+| ++||+ .++.. +++++.
T Consensus 227 ~~~~~D~~~~~Vi~a~G-~~Pn~--~l~~~-~l~l~~ 259 (555)
T TIGR03143 227 YKAPKDAGTFGVFVFVG-YAPSS--ELFKG-VVELDK 259 (555)
T ss_pred EeccccccceEEEEEeC-CCCCh--hHHhh-hcccCC
Confidence 3676 999999 99999 88765 566653
No 58
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.63 E-value=5.8e-16 Score=139.13 Aligned_cols=164 Identities=14% Similarity=0.181 Sum_probs=127.9
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD----- 114 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~----- 114 (227)
+.+++.+.+.+|..|.+ +...|.++.+..+.||++|+|||+ .|++||+||.+... ++-+.++.+.+
T Consensus 71 ~~~i~L~~~~~v~~idr-----~~k~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ 141 (793)
T COG1251 71 ENGITLYTGEKVIQIDR-----ANKVVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPG--VFVYRTIDDVEAMLDC 141 (793)
T ss_pred HcCcEEEcCCeeEEecc-----CcceEEccCCcEeecceeEEecCc--cccccCCCCCCCCC--eeEEecHHHHHHHHHH
Confidence 56788999999999987 678899999999999999999999 99999999987533 23333333221
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeC----Cc
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ----DS 175 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~----~~ 175 (227)
.-..++-+|||||--|+|.|..|.+.|-++++++-.+..+..++. -++..+.+.+++.+ .+
T Consensus 142 ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~ 221 (793)
T COG1251 142 ARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEG 221 (793)
T ss_pred HhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceee
Confidence 113456899999999999999999999999999885554433332 24444544444433 35
Q ss_pred eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810 176 VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS 215 (227)
Q Consensus 176 v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~ 215 (227)
+.|+||..+++|.|++|+| ++||. .+....|+..++.
T Consensus 222 vr~~DG~~i~ad~VV~a~G-IrPn~--ela~~aGlavnrG 258 (793)
T COG1251 222 VRFADGTEIPADLVVMAVG-IRPND--ELAKEAGLAVNRG 258 (793)
T ss_pred EeecCCCcccceeEEEecc-ccccc--HhHHhcCcCcCCC
Confidence 8999999999999999999 99999 9999999988873
No 59
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.52 E-value=2.1e-14 Score=122.71 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=71.5
Q ss_pred eEEeCceEEEEEEeeCCC-CcEEEec----CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC--CC
Q psy810 44 EIKFGSSWAEIEKFSVPT-KCLHFAN----EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--PF 116 (227)
Q Consensus 44 ~i~~~~~V~~i~~~~~~~-~~~~v~~----~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~ 116 (227)
.++++++|.+|+...... ..|+|.+ +++..+.+++||+|||. .|.+|++-........++|+.++.... ..
T Consensus 111 ~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~--~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~ 188 (341)
T PF13434_consen 111 QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG--QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSL 188 (341)
T ss_dssp TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT---
T ss_pred ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC--CCCCCcchhhcCCCCCEEEehHhhhcccccc
Confidence 488999999999765311 3589987 46789999999999998 889887643211124688988766542 45
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~ 151 (227)
.+++|+|||||.||+|++..|.+.+. +|++++|+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 67899999999999999999999864 899999964
No 60
>KOG4716|consensus
Probab=99.52 E-value=4.9e-14 Score=116.78 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=94.7
Q ss_pred eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+.+.+++++||||. +|+.|++||..++ .+.+.+..+.....| +.+|||+|+.|+|+|.+|..+|-+||+..|
T Consensus 157 ~~~~ta~~fvIatG~--RPrYp~IpG~~Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVR- 229 (503)
T KOG4716|consen 157 ERFLTAENFVIATGL--RPRYPDIPGAKEY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVR- 229 (503)
T ss_pred eEEeecceEEEEecC--CCCCCCCCCceee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEE-
Confidence 567999999999999 9999999997764 355555544444344 467899999999999999999999999988
Q ss_pred Cccccc---cCC---------CceE--Ec---CCccEEeCCceE--E-----cCCCEEeccEEEEccccccccccccccC
Q psy810 151 SVAFKH---QIG---------DSVV--QK---PDIKRLLQDSVV--F-----QDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 151 ~~~~~~---~~~---------~~i~--~~---~~i~~~~~~~v~--~-----~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
.-.++. .+. ..|. .. .+|+.+++..+. . .++.+-.+|.|+||+| ..+.++---|+
T Consensus 230 SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiG-R~~~~~~l~L~ 308 (503)
T KOG4716|consen 230 SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIG-RKALTDDLNLD 308 (503)
T ss_pred EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhc-cccchhhcCCC
Confidence 333322 111 1222 22 234555444421 1 1223457999999999 77776222445
Q ss_pred CcccccccCCCCCCCCC
Q psy810 207 TFSISMAMSTPDGPNPT 223 (227)
Q Consensus 207 ~~gl~~~~~~~~~~~~~ 223 (227)
..|++.+. .++.+++
T Consensus 309 ~~GVk~n~--ks~KI~v 323 (503)
T KOG4716|consen 309 NAGVKTNE--KSGKIPV 323 (503)
T ss_pred ccceeecc--cCCcccc
Confidence 66666543 3455544
No 61
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.50 E-value=2e-13 Score=121.03 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=91.1
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC------C--------CCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY------R--------VPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~------~--------~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..||+||||||+. .|..|++||.+. .+ +++..++ . +.....+++|+|||+|++|+|+|..+.+
T Consensus 217 ~~yd~viiAtGa~-~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~ 293 (449)
T TIGR01316 217 SQYDAVFIGTGAG-LPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALR 293 (449)
T ss_pred hhCCEEEEeCCCC-CCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence 4699999999983 478888998653 11 1111111 0 1123468999999999999999999999
Q ss_pred ccCeEEEEeecCcc-ccc-------cCCCceEE--cCCccEEeC--Cc----eEEc---------CC-----------CE
Q psy810 140 VAKNVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLLQ--DS----VVFQ---------DD-----------TS 183 (227)
Q Consensus 140 ~~~~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~~--~~----v~~~---------~g-----------~~ 183 (227)
.|.+||+++|+... +.. ....+|.+ ...+.++.+ ++ +.+. +| ..
T Consensus 294 ~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~ 373 (449)
T TIGR01316 294 LGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECK 373 (449)
T ss_pred cCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEE
Confidence 99999999985421 100 00123333 345555532 11 3332 22 25
Q ss_pred EeccEEEEccccccccccccccCCccccccc
Q psy810 184 HPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
+++|.||+|+| +.|++ .++++.+++++.
T Consensus 374 i~~D~Vi~AiG-~~p~~--~~l~~~gl~~~~ 401 (449)
T TIGR01316 374 LEADAVIVAIG-NGSNP--IMAETTRLKTSE 401 (449)
T ss_pred EECCEEEECCC-CCCCc--hhhhccCcccCC
Confidence 89999999999 99999 999988888874
No 62
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.49 E-value=2.8e-13 Score=116.49 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=100.6
Q ss_pred ceeEEeCceEEEEEEe-eCCCCcEEEec--CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeec-------CCC-
Q psy810 42 CIEIKFGSSWAEIEKF-SVPTKCLHFAN--EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS-------HDY- 110 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~-~~~~~~~~v~~--~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~-------~~~- 110 (227)
++++++++.+..+... ....+.+.... .++..+.||+||||||++ .|..|++||.+... +... ...
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~~--v~~~~~~~~~~~~~~ 158 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLPG--VYSALEYLFRIRAAK 158 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCccccC--ceeHHHHHHHhhhcc
Confidence 5577777777554320 11112222111 112247899999999993 26778888865311 1111 111
Q ss_pred ------CCCCCCCCCeEEEEccCccHHHHHHHHHhccCe-EEEEeecCccccccC---------CCceEE--cCCccEEe
Q psy810 111 ------RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVAFKHQI---------GDSVVQ--KPDIKRLL 172 (227)
Q Consensus 111 ------~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~~~~~~---------~~~i~~--~~~i~~~~ 172 (227)
.....+.+++++|+|+|++|+|+|..|.+.+.+ |+++.++.. ..... ..+|.+ ...+.++.
T Consensus 159 ~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 237 (352)
T PRK12770 159 LGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI-NEAPAGKYEIERLIARGVEFLELVTPVRII 237 (352)
T ss_pred ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch-hhCCCCHHHHHHHHHcCCEEeeccCceeee
Confidence 111234578999999999999999999888876 999988532 11101 123333 33455554
Q ss_pred CCc----eEEc------------------C--CCEEeccEEEEccccccccccccccCC-ccccccc
Q psy810 173 QDS----VVFQ------------------D--DTSHPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM 214 (227)
Q Consensus 173 ~~~----v~~~------------------~--g~~i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~ 214 (227)
+++ +.+. + +..+++|.||+|+| ++|+. .++.+ .|++++.
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G-~~p~~--~l~~~~~g~~~~~ 301 (352)
T PRK12770 238 GEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG-EIPTP--PFAKECLGIELNR 301 (352)
T ss_pred cCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc-cCCCc--hhhhcccCceecC
Confidence 321 2221 2 24689999999999 99998 88776 7777764
No 63
>PRK12831 putative oxidoreductase; Provisional
Probab=99.46 E-value=4e-13 Score=119.53 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=90.1
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----------CC---CCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----------YR---VPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----------~~---~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
.+.||+|+||||++ .|+.|++||.+. .+ ++...+ ++ +.....+++|+|||||++|+|+|..+.+
T Consensus 226 ~~~~d~viiAtGa~-~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r 302 (464)
T PRK12831 226 EEGFDAVFIGSGAG-LPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302 (464)
T ss_pred ccCCCEEEEeCCCC-CCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHH
Confidence 35699999999983 377888998653 11 111111 11 1223468999999999999999999999
Q ss_pred ccCeEEEEeecCcc-cccc-------CCCceEE--cCCccEEeC--Cc----eEEc------------------CCC--E
Q psy810 140 VAKNVFLSHHISVA-FKHQ-------IGDSVVQ--KPDIKRLLQ--DS----VVFQ------------------DDT--S 183 (227)
Q Consensus 140 ~~~~Vtli~~~~~~-~~~~-------~~~~i~~--~~~i~~~~~--~~----v~~~------------------~g~--~ 183 (227)
+|.+||+++|+... +... ....|++ ...+.++.. ++ +.+. +|+ .
T Consensus 303 ~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~ 382 (464)
T PRK12831 303 LGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFV 382 (464)
T ss_pred cCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEE
Confidence 99999999985421 1110 0123332 334445532 21 2221 233 5
Q ss_pred EeccEEEEccccccccccccccCC-ccccccc
Q psy810 184 HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM 214 (227)
Q Consensus 184 i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~ 214 (227)
+++|.||+|+| +.|++ .++.+ .|++++.
T Consensus 383 i~~D~Vi~AiG-~~p~~--~~~~~~~gl~~~~ 411 (464)
T PRK12831 383 LEVDTVIMSLG-TSPNP--LISSTTKGLKINK 411 (464)
T ss_pred EECCEEEECCC-CCCCh--hhhcccCCceECC
Confidence 89999999999 99999 88876 6888764
No 64
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.44 E-value=6.7e-13 Score=125.56 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=95.5
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC------CCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV------PDP 115 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~------~~~ 115 (227)
++++++++.+ .+. .++.....||+||||||++. |..+++||.+. .+++...+.. ...
T Consensus 603 GVe~~~gt~V-di~------------le~L~~~gYDaVILATGA~~-~~~l~IpG~~~---gV~saldfL~~~k~~~~~~ 665 (1019)
T PRK09853 603 GVKFEFGCSP-DLT------------VEQLKNEGYDYVVVAIGADK-NGGLKLEGGNQ---NVIKALPFLEEYKNKGTAL 665 (1019)
T ss_pred CCEEEeCcee-EEE------------hhhheeccCCEEEECcCCCC-CCCCCCCCccC---CceehHHHHHHHhhhcccc
Confidence 5577777665 221 12233456999999999942 44557787542 1122211111 112
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhc-c-CeEEEEeecCccccc--------cCCCceEE--cCCccEEeCCc--------
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHISVAFKH--------QIGDSVVQ--KPDIKRLLQDS-------- 175 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~~~~~~~--------~~~~~i~~--~~~i~~~~~~~-------- 175 (227)
..+++|+|||||++|+|+|..+.+. + .+|++++|+....-. .+...|++ ...+.++..++
T Consensus 666 ~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~ 745 (1019)
T PRK09853 666 KLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMK 745 (1019)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEE
Confidence 3589999999999999999998887 4 489999986432110 01123332 22333343111
Q ss_pred ------------eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 176 ------------VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 176 ------------v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
+...++..+++|.||+|+| +.|++ +|+.+.|++++.
T Consensus 746 lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG-~~Pnt--elle~~GL~ld~ 793 (1019)
T PRK09853 746 LGEPDESGRRRPVETGETVTLEADTVITAIG-EQVDT--ELLKANGIPLDK 793 (1019)
T ss_pred eecccCCCceEEeeCCCeEEEEeCEEEECCC-CcCCh--hHHHhcCccccC
Confidence 1122335689999999999 99999 999988988764
No 65
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.42 E-value=8.9e-13 Score=117.19 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=89.0
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC--------CCCCCCCCeEEEEccCccHHHHHHHHHhccC-eE
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR--------VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NV 144 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~V 144 (227)
+.||+||+|||+. .|..+++||.+. .+ +++...+. ......+++|+|||+|++|+|+|..+.+.+. +|
T Consensus 224 ~~~d~vvlAtGa~-~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~V 300 (457)
T PRK11749 224 AGYDAVFIGTGAG-LPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESV 300 (457)
T ss_pred hhCCEEEEccCCC-CCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 7899999999993 256678888653 11 12211111 1112358999999999999999999999876 89
Q ss_pred EEEeecCcc-cccc-------CCCceE--EcCCccEEeCCc-----eEEc-------------------CCCEEeccEEE
Q psy810 145 FLSHHISVA-FKHQ-------IGDSVV--QKPDIKRLLQDS-----VVFQ-------------------DDTSHPFDSII 190 (227)
Q Consensus 145 tli~~~~~~-~~~~-------~~~~i~--~~~~i~~~~~~~-----v~~~-------------------~g~~i~~D~vi 190 (227)
|+++++... +... ...+|+ ....+.++.+++ |++. ++.++++|.||
T Consensus 301 tlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi 380 (457)
T PRK11749 301 TIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVI 380 (457)
T ss_pred EEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEE
Confidence 999985421 1110 012333 345666665332 5442 22368999999
Q ss_pred EccccccccccccccC-Cccccccc
Q psy810 191 YCTGAYKYSYKLTFLA-TFSISMAM 214 (227)
Q Consensus 191 ~atG~~~~~~~~~~l~-~~gl~~~~ 214 (227)
+|+| ++|+. .++. ..+++++.
T Consensus 381 ~a~G-~~p~~--~l~~~~~gl~~~~ 402 (457)
T PRK11749 381 KAIG-QTPNP--LILSTTPGLELNR 402 (457)
T ss_pred ECcc-CCCCc--hhhccccCccCCC
Confidence 9999 99998 7765 56676654
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.39 E-value=1.7e-12 Score=121.76 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----------CC---CCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810 72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----------YR---VPDPFRDQNVLLVGFGPSGVDIAMDIE 138 (227)
Q Consensus 72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----------~~---~~~~~~~~~v~VvGgG~~g~e~a~~l~ 138 (227)
....||+||||||++ .|+.|++||.+. .+ +++..+ ++ +.....+++|+|||||++|+|+|..+.
T Consensus 514 ~~~~ydavvlAtGa~-~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~ 590 (752)
T PRK12778 514 EEEGFKGIFIASGAG-LPNFMNIPGENS-NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAK 590 (752)
T ss_pred hhcCCCEEEEeCCCC-CCCCCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHH
Confidence 456799999999993 377888998653 11 111111 11 112246899999999999999999999
Q ss_pred hccCe-EEEEeecCcc-cccc-------CCCceEE--cCCccEEeC--Cc----eEEc---------C---------CC-
Q psy810 139 KVAKN-VFLSHHISVA-FKHQ-------IGDSVVQ--KPDIKRLLQ--DS----VVFQ---------D---------DT- 182 (227)
Q Consensus 139 ~~~~~-Vtli~~~~~~-~~~~-------~~~~i~~--~~~i~~~~~--~~----v~~~---------~---------g~- 182 (227)
+.|.+ ||+++++... +... ....|++ ...+.++.. ++ +.+. + |+
T Consensus 591 r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 670 (752)
T PRK12778 591 RLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGST 670 (752)
T ss_pred HcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCe
Confidence 99886 9999986431 1110 0123333 334444431 11 2321 1 22
Q ss_pred -EEeccEEEEccccccccccccccCCc-cccccc
Q psy810 183 -SHPFDSIIYCTGAYKYSYKLTFLATF-SISMAM 214 (227)
Q Consensus 183 -~i~~D~vi~atG~~~~~~~~~~l~~~-gl~~~~ 214 (227)
.+++|.||+|+| +.|+. .++... +++++.
T Consensus 671 ~~i~~D~Vi~A~G-~~p~~--~l~~~~~gl~~~~ 701 (752)
T PRK12778 671 FTVDVDLVIVSVG-VSPNP--LVPSSIPGLELNR 701 (752)
T ss_pred EEEECCEEEECcC-CCCCc--cccccccCceECC
Confidence 489999999999 99998 777654 777764
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.32 E-value=1.5e-11 Score=113.61 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=87.4
Q ss_pred EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-----CCCCCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEe
Q psy810 75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-----RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSH 148 (227)
Q Consensus 75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~ 148 (227)
.||+|++|||++. +..+++||.+. .+ ++....+ .......+++|+|||+|++|+|+|..+.+.|. +||+++
T Consensus 278 ~~DaVilAtGa~~-~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 278 EFDAVLLAVGAQK-ASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred hcCEEEEEcCCCC-CCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence 5999999999932 34567888653 22 1111111 12233468999999999999999999998875 699999
Q ss_pred ecCcc-ccc-------cCCCceE--EcCCccEEeC--Cce-----EEc---------------CCC--EEeccEEEEccc
Q psy810 149 HISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DSV-----VFQ---------------DDT--SHPFDSIIYCTG 194 (227)
Q Consensus 149 ~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~v-----~~~---------------~g~--~i~~D~vi~atG 194 (227)
|+... +.. .+...|. ....+.++.+ +++ .+. +|+ .+++|.||+|+|
T Consensus 355 r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG 434 (652)
T PRK12814 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG 434 (652)
T ss_pred ecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC
Confidence 86431 111 0112232 3334444432 111 111 233 489999999999
Q ss_pred cccccccccccCCccccccc
Q psy810 195 AYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 195 ~~~~~~~~~~l~~~gl~~~~ 214 (227)
+.|++ .|+...|++++.
T Consensus 435 -~~p~~--~ll~~~gl~~~~ 451 (652)
T PRK12814 435 -QQVDP--PIAEAAGIGTSR 451 (652)
T ss_pred -CcCCc--ccccccCccccC
Confidence 99999 999988888764
No 68
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=8.9e-12 Score=105.88 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred eeEEeCceEEEEEEeeCCCCcEE--EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCccc-ceeeecCCCCCC-CCCCC
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLH--FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFR-GLQMHSHDYRVP-DPFRD 118 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~--v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~-~~~~~~~~~~~~-~~~~~ 118 (227)
-..+|+++|..|...+.+ .... +.+.++..+.+++||+++|. .|++|+. ..... ..++|+.++... .+...
T Consensus 112 ~~~rfg~~V~~i~~~~~d-~~~~~~~~t~~~~~y~ar~lVlg~G~--~P~IP~~--f~~l~~~~vfHss~~~~~~~~~~~ 186 (436)
T COG3486 112 PSLRFGEEVTDISSLDGD-AVVRLFVVTANGTVYRARNLVLGVGT--QPYIPPC--FRSLIGERVFHSSEYLERHPELLQ 186 (436)
T ss_pred CccccCCeeccccccCCc-ceeEEEEEcCCCcEEEeeeEEEccCC--CcCCChH--HhCcCccceeehHHHHHhhHHhhc
Confidence 467889999977443322 2233 45566669999999999999 9999853 11222 357888877643 34444
Q ss_pred Ce-EEEEccCccHHHHHHHHHhc----cCeEEEEeecC
Q psy810 119 QN-VLLVGFGPSGVDIAMDIEKV----AKNVFLSHHIS 151 (227)
Q Consensus 119 ~~-v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~ 151 (227)
++ |.|||+|.||+|+..+|... ..++.|++|+.
T Consensus 187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~ 224 (436)
T COG3486 187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS 224 (436)
T ss_pred CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC
Confidence 44 99999999999999998875 23588899964
No 69
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.31 E-value=8.8e-12 Score=118.86 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=89.3
Q ss_pred EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC---------------CCCCCCCCeEEEEccCccH
Q psy810 66 FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR---------------VPDPFRDQNVLLVGFGPSG 130 (227)
Q Consensus 66 v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~v~VvGgG~~g 130 (227)
++.++.....||+|+||||++ .|+.+++||.+. .+ ++...++. ......+|+|+|||||++|
T Consensus 383 it~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 383 ATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred EeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 444554456799999999994 377889998643 21 11111111 0112368999999999999
Q ss_pred HHHHHHHHhccCeEEEEeecCcc-ccc-------cCCCceEE--cCCccEEeCC--c--e---EE---------------
Q psy810 131 VDIAMDIEKVAKNVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLLQD--S--V---VF--------------- 178 (227)
Q Consensus 131 ~e~a~~l~~~~~~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~~~--~--v---~~--------------- 178 (227)
+|+|..+.+.|.+||+++|+... +.. .....+.+ ...+.++..+ + + .+
T Consensus 460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~ 539 (944)
T PRK12779 460 MDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRS 539 (944)
T ss_pred HHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCcee
Confidence 99999999999999999986421 110 01123332 2344444321 1 1 11
Q ss_pred --cCCC--EEeccEEEEccccccccccccccC-Cccccccc
Q psy810 179 --QDDT--SHPFDSIIYCTGAYKYSYKLTFLA-TFSISMAM 214 (227)
Q Consensus 179 --~~g~--~i~~D~vi~atG~~~~~~~~~~l~-~~gl~~~~ 214 (227)
.+|+ .+++|.||+|+| +.|+. .+.. ..+++++.
T Consensus 540 ~~~~G~e~~i~aD~VI~AiG-~~p~~--~l~~~~~gle~~~ 577 (944)
T PRK12779 540 PKPTGEIERVPVDLVIMALG-NTANP--IMKDAEPGLKTNK 577 (944)
T ss_pred eecCCceEEEECCEEEEcCC-cCCCh--hhhhcccCceECC
Confidence 1233 489999999999 99987 5432 34666653
No 70
>KOG1346|consensus
Probab=99.26 E-value=1.6e-11 Score=104.50 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=108.1
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCC-CCCC-cccceeeecCCCCCCCCC---
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSY-EGAD-LFRGLQMHSHDYRVPDPF--- 116 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~-~g~~-~~~~~~~~~~~~~~~~~~--- 116 (227)
++-+..+-+|+.|+. ....|.+++|..+.||.++||||. +|+-.++ ..+. +...++..+....+...+
T Consensus 271 GvAvl~G~kvvkid~-----~d~~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~ 343 (659)
T KOG1346|consen 271 GVAVLRGRKVVKIDE-----EDKKVILNDGTTIGYDKCLIATGV--RPKKLQVFEEASEEVKQKITYFRYPADFKRLEKG 343 (659)
T ss_pred ceEEEeccceEEeec-----ccCeEEecCCcEeehhheeeecCc--CcccchhhhhcCHHhhhheeEEecchHHHHHHHh
Confidence 455566667776664 335678899999999999999999 7774432 2211 122233322211111110
Q ss_pred --CCCeEEEEccCccHHHHHHHHHhc----cCeEEEEeecCccccccCCC-------------ceEE--cCCccEEeCC-
Q psy810 117 --RDQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHISVAFKHQIGD-------------SVVQ--KPDIKRLLQD- 174 (227)
Q Consensus 117 --~~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~~~~~~~~~~-------------~i~~--~~~i~~~~~~- 174 (227)
..++|.|||+|+.|.|+|+.|.+. |.+|+-+-.....+...+|. .+.. +..|+.+...
T Consensus 344 ~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~ 423 (659)
T KOG1346|consen 344 LAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC 423 (659)
T ss_pred hhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc
Confidence 137899999999999999999875 55776554433333333442 2222 2234444321
Q ss_pred -c--eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810 175 -S--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS 215 (227)
Q Consensus 175 -~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~ 215 (227)
. +.+.||.++..|+|++|+| -.||+ .+.+..||+.|..
T Consensus 424 ~nl~lkL~dG~~l~tD~vVvavG-~ePN~--ela~~sgLeiD~~ 464 (659)
T KOG1346|consen 424 KNLVLKLSDGSELRTDLVVVAVG-EEPNS--ELAEASGLEIDEK 464 (659)
T ss_pred cceEEEecCCCeeeeeeEEEEec-CCCch--hhcccccceeecc
Confidence 2 6788999999999999999 99999 9999999999875
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.26 E-value=3.4e-11 Score=115.91 Aligned_cols=134 Identities=10% Similarity=0.006 Sum_probs=93.2
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC---CCCC-CCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEE
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH---DYRV-PDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLS 147 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~---~~~~-~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli 147 (227)
.+.||+||||||+ .++.|++||.+. ++. +... .+.. .....+++|+|+|+|++|+|+|..|.+.| ..|+++
T Consensus 272 ~i~a~~VILATGa--~~r~~pipG~~~-pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv 347 (985)
T TIGR01372 272 RIRAKRVVLATGA--HERPLVFANNDR-PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII 347 (985)
T ss_pred EEEcCEEEEcCCC--CCcCCCCCCCCC-CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence 6899999999999 778889998654 221 1111 1111 12346899999999999999999999998 467888
Q ss_pred eecCcccc---ccC-CCceE--EcCCccEEeCC----ceEEc----CCCEEeccEEEEccccccccccccccCCcccccc
Q psy810 148 HHISVAFK---HQI-GDSVV--QKPDIKRLLQD----SVVFQ----DDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA 213 (227)
Q Consensus 148 ~~~~~~~~---~~~-~~~i~--~~~~i~~~~~~----~v~~~----~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~ 213 (227)
++++.... ..+ ..+|. ....+.++.++ +|++. +++++++|.|++++| +.||+ .++..++.++.
T Consensus 348 ~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G-~~Pnt--~L~~~lg~~~~ 424 (985)
T TIGR01372 348 DARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG-WTPVV--HLFSQRGGKLA 424 (985)
T ss_pred ccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC-cCchh--HHHHhcCCCee
Confidence 77432211 011 12333 34556677654 35554 445789999999999 99999 99988886654
No 72
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.24 E-value=2.6e-11 Score=115.30 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=86.2
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----CCCC--CCCCCCeEEEEccCccHHHHHHHHHhc-c-CeE
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----YRVP--DPFRDQNVLLVGFGPSGVDIAMDIEKV-A-KNV 144 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----~~~~--~~~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~V 144 (227)
...||+|+||||++. +..++++|.... .+.... +.+. ....+++|+|||||++|+|+|..+.+. | .+|
T Consensus 619 ~~gYDaVIIATGA~~-~~~l~I~G~~~~---v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kV 694 (1012)
T TIGR03315 619 NQGYKYVILAIGAWK-HGPLRLEGGGER---VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKV 694 (1012)
T ss_pred cccccEEEECCCCCC-CCCCCcCCCCcc---eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceE
Confidence 456999999999942 344567774321 111111 1111 223589999999999999999998876 5 489
Q ss_pred EEEeecCccc-cc-------cCCCceEE--cCCccEEeCCceE-----------------EcCCC--EEeccEEEEcccc
Q psy810 145 FLSHHISVAF-KH-------QIGDSVVQ--KPDIKRLLQDSVV-----------------FQDDT--SHPFDSIIYCTGA 195 (227)
Q Consensus 145 tli~~~~~~~-~~-------~~~~~i~~--~~~i~~~~~~~v~-----------------~~~g~--~i~~D~vi~atG~ 195 (227)
++++|+.... .. .+...|++ ...+.++.++.++ ..+|+ .+++|.||+|+|
T Consensus 695 tLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG- 773 (1012)
T TIGR03315 695 TVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVG- 773 (1012)
T ss_pred EEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecC-
Confidence 9999864321 10 01123332 2233333322211 12344 589999999999
Q ss_pred ccccccccccCCccccccc
Q psy810 196 YKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 196 ~~~~~~~~~l~~~gl~~~~ 214 (227)
+.|++ .+++..|++++.
T Consensus 774 ~~Pnt--~lle~~GL~ld~ 790 (1012)
T TIGR03315 774 EQVDT--DLLQKNGIPLDE 790 (1012)
T ss_pred CcCCh--HHHHhcCcccCC
Confidence 99999 999988888765
No 73
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.24 E-value=1.4e-10 Score=103.58 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC-C-------------CCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH-D-------------YRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~-~-------------~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..||+|++|||+. .|..+++||.+. .+ +++. + ........+++|+|||+|++|+|+|..+.+
T Consensus 227 ~~~d~vvlAtGa~-~~~~l~ipG~~~-~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~ 302 (471)
T PRK12810 227 AEYDAVFLGTGAY-KPRDLGIPGRDL-DG--VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIR 302 (471)
T ss_pred hhCCEEEEecCCC-CCCcCCCCCccC-CC--cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHH
Confidence 5799999999993 156678888653 21 1111 0 011123468999999999999999998888
Q ss_pred cc-CeEEEEeecCcccccc------------------CCCce--EEcCCccEEeC-C-c---eEE-----cCC-------
Q psy810 140 VA-KNVFLSHHISVAFKHQ------------------IGDSV--VQKPDIKRLLQ-D-S---VVF-----QDD------- 181 (227)
Q Consensus 140 ~~-~~Vtli~~~~~~~~~~------------------~~~~i--~~~~~i~~~~~-~-~---v~~-----~~g------- 181 (227)
.+ ++||+..+........ ....+ .....+.++.+ + . |.+ .+|
T Consensus 303 ~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g 382 (471)
T PRK12810 303 QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEG 382 (471)
T ss_pred cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCC
Confidence 76 4799775532111110 01122 23445666643 2 1 222 222
Q ss_pred --CEEeccEEEEccccccccccccccCCccccccc
Q psy810 182 --TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 182 --~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
.++++|.||+|+| +.|+. ..|++.++++++.
T Consensus 383 ~~~~i~~D~VI~A~G-~~p~~-~~l~~~~gl~~~~ 415 (471)
T PRK12810 383 SEFVLPADLVLLAMG-FTGPE-AGLLAQFGVELDE 415 (471)
T ss_pred ceEEEECCEEEECcC-cCCCc-hhhccccCcccCC
Confidence 3589999999999 99984 0488888888764
No 74
>KOG2495|consensus
Probab=99.24 E-value=2.3e-11 Score=103.74 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=83.6
Q ss_pred eEEEcCEEEEccCCCCCCCCCCCCCCCccc---cee----------eecC---CC---CCCCCCCCCeEEEEccCccHHH
Q psy810 72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFR---GLQ----------MHSH---DY---RVPDPFRDQNVLLVGFGPSGVD 132 (227)
Q Consensus 72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~---~~~----------~~~~---~~---~~~~~~~~~~v~VvGgG~~g~e 132 (227)
..+.||++|+|+|+ .++.+.+||..++. -.+ ++.. .. .+.+.-+--|++|||||++|+|
T Consensus 155 ~~i~YDyLViA~GA--~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVE 232 (491)
T KOG2495|consen 155 FVIGYDYLVIAVGA--EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVE 232 (491)
T ss_pred eeecccEEEEeccC--CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCccee
Confidence 68999999999999 88999999876521 000 0000 00 0111112237999999999999
Q ss_pred HHHHHHhc--------------cCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCceEEcCC--
Q psy810 133 IAMDIEKV--------------AKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDSVVFQDD-- 181 (227)
Q Consensus 133 ~a~~l~~~--------------~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~v~~~~g-- 181 (227)
+|.+|+.. -.+|||+...+ .+.+.+. . ++..++.+..+++..++.+++
T Consensus 233 FAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d-~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g 311 (491)
T KOG2495|consen 233 FAAELADFIPEDLRKIYPELKKDIKVTLIEAAD-HILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDG 311 (491)
T ss_pred ehHHHHHHHHHHHHHhhhcchhheEEEeeccch-hHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCC
Confidence 99999864 13589998843 2221121 2 444556788888888777654
Q ss_pred --CEEeccEEEEcccccccc
Q psy810 182 --TSHPFDSIIYCTGAYKYS 199 (227)
Q Consensus 182 --~~i~~D~vi~atG~~~~~ 199 (227)
++||+-+++|+|| ..+.
T Consensus 312 ~~~~iPYG~lVWatG-~~~r 330 (491)
T KOG2495|consen 312 EIEEIPYGLLVWATG-NGPR 330 (491)
T ss_pred ceeeecceEEEecCC-CCCc
Confidence 5699999999999 7665
No 75
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=104.94 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=109.5
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC---
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF--- 116 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~--- 116 (227)
..+++++.+++|.++.. ....+.+.++ .+.||++++|||+ .|..++ +. ............+...+
T Consensus 65 ~~~i~~~~~~~v~~id~-----~~~~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~ 132 (415)
T COG0446 65 ATGIDVRTGTEVTSIDP-----ENKVVLLDDG-EIEYDYLVLATGA--RPRPPP--IS--DWEGVVTLRLREDAEALKGG 132 (415)
T ss_pred hhCCEEeeCCEEEEecC-----CCCEEEECCC-cccccEEEEcCCC--cccCCC--cc--ccCceEEECCHHHHHHHHHH
Confidence 34668888899999875 5566777777 8999999999999 777766 21 11111222222222111
Q ss_pred --CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccC-C------------Cc--eEEcCCccEEeCCc----
Q psy810 117 --RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI-G------------DS--VVQKPDIKRLLQDS---- 175 (227)
Q Consensus 117 --~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~-~------------~~--i~~~~~i~~~~~~~---- 175 (227)
..++++|+|+|..|+++|..+.+.|.+|++++..+......+ + .. +..+..+.+++.+.
T Consensus 133 ~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~ 212 (415)
T COG0446 133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLV 212 (415)
T ss_pred HhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcce
Confidence 147899999999999999999999999999998654433322 2 12 44566777776542
Q ss_pred ---eEEcCCCEEeccEEEEccccccccccccccCCcc
Q psy810 176 ---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFS 209 (227)
Q Consensus 176 ---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~g 209 (227)
+...++..+++|.+++++| .+||. .+..+.+
T Consensus 213 ~~~~~~~~~~~~~~d~~~~~~g-~~p~~--~l~~~~~ 246 (415)
T COG0446 213 VERVVGIDGEEIKADLVIIGPG-ERPNV--VLANDAL 246 (415)
T ss_pred eeEEEEeCCcEEEeeEEEEeec-ccccH--HHHhhCc
Confidence 4777888999999999999 99997 6666554
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.20 E-value=1.7e-10 Score=110.98 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=86.9
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC--------------CCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH--------------DYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..||+||||||++ .|+.|++||.+. .+ +++.. .+++.....+++|+|||||++|+|+|..+.+
T Consensus 516 ~~yDaViIATGa~-~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~r 592 (1006)
T PRK12775 516 KGFDAVFLGVGAG-APTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKR 592 (1006)
T ss_pred cCCCEEEEecCCC-CCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHH
Confidence 4699999999993 367889998643 11 22222 1222333468999999999999999999999
Q ss_pred ccC-eEEEEeecCcc-ccc-------cCCCceEE--cCCccEEe--CCc----eEEc-----------------CCC--E
Q psy810 140 VAK-NVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLL--QDS----VVFQ-----------------DDT--S 183 (227)
Q Consensus 140 ~~~-~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~--~~~----v~~~-----------------~g~--~ 183 (227)
.|. .|+++.|+... +.. ....+|.+ ...+.++. +++ +.+. +|+ .
T Consensus 593 lGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 593 LGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred cCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 876 58998875321 110 00123333 33444553 122 2221 222 4
Q ss_pred EeccEEEEccccccccccccccCC-ccccccc
Q psy810 184 HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM 214 (227)
Q Consensus 184 i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~ 214 (227)
+++|.||+|+| +.||. .++.. .+++++.
T Consensus 673 i~~D~Vi~AiG-~~p~~--~~~~~~~gl~l~~ 701 (1006)
T PRK12775 673 LECDTVIYALG-TKANP--IITQSTPGLALNK 701 (1006)
T ss_pred EEcCEEEECCC-cCCCh--hhhhccCCcccCC
Confidence 89999999999 99998 77654 3677654
No 77
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.16 E-value=5e-10 Score=99.86 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=85.3
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC-----------CCC---C--CCCCCCCeEEEEccCccHHHHHHHH
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH-----------DYR---V--PDPFRDQNVLLVGFGPSGVDIAMDI 137 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~-----------~~~---~--~~~~~~~~v~VvGgG~~g~e~a~~l 137 (227)
..||+||+|||+.. +..+++||.+. .+ +.+.. ... . .....+++++|+|+|++|+++|..+
T Consensus 225 ~~~D~vilAtGa~~-~~~~~i~g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a 301 (467)
T TIGR01318 225 EDYDAVFLGVGTYR-SMRGGLPGEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTA 301 (467)
T ss_pred hcCCEEEEEeCCCC-CCcCCCCCcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHH
Confidence 47999999999932 13457888653 11 11100 010 0 1124589999999999999999999
Q ss_pred Hhcc-CeEEEEeecCcc-ccc-------cCCCceE--EcCCccEEeC--Cc----eEEc---------C---------C-
Q psy810 138 EKVA-KNVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DS----VVFQ---------D---------D- 181 (227)
Q Consensus 138 ~~~~-~~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~----v~~~---------~---------g- 181 (227)
.+++ .+||+++|++.. +.. .....|. ....+.++.. ++ +++. + |
T Consensus 302 ~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~ 381 (467)
T TIGR01318 302 IRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGS 381 (467)
T ss_pred HHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCc
Confidence 8887 579999985432 110 0012333 3445556532 11 2221 1 2
Q ss_pred -CEEeccEEEEccccccccccccccCCccccccc
Q psy810 182 -TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 182 -~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
..+++|.||+|+| +.|+. ..+++..+++++.
T Consensus 382 ~~~i~~D~Vi~a~G-~~p~~-~~~~~~~gl~~~~ 413 (467)
T TIGR01318 382 EFVLPADVVIMAFG-FQPHA-MPWLAGHGITLDS 413 (467)
T ss_pred eEEEECCEEEECCc-CCCCc-cccccccCccCCC
Confidence 2589999999999 99983 0578888887764
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.15 E-value=7.2e-10 Score=99.29 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=85.4
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC---------CCCC-------CCCCCCCeEEEEccCccHHHHHHH
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH---------DYRV-------PDPFRDQNVLLVGFGPSGVDIAMD 136 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~---------~~~~-------~~~~~~~~v~VvGgG~~g~e~a~~ 136 (227)
...||+|++|||+. .|..|++||.+. .+ +++. ...+ .....+|+|+|||+|++|+|+|..
T Consensus 226 ~~~~d~VilAtGa~-~~~~l~i~G~~~-~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~ 301 (485)
T TIGR01317 226 KEQFDAVVLAGGAT-KPRDLPIPGREL-KG--IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGT 301 (485)
T ss_pred HhhCCEEEEccCCC-CCCcCCCCCcCC-CC--cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHH
Confidence 35799999999993 267788998653 22 2211 0111 112468999999999999999877
Q ss_pred HHhcc-CeEEEEeecCccccc-----c-------------CCC-----c---eEEcCCccEEeCC---c---eEE-----
Q psy810 137 IEKVA-KNVFLSHHISVAFKH-----Q-------------IGD-----S---VVQKPDIKRLLQD---S---VVF----- 178 (227)
Q Consensus 137 l~~~~-~~Vtli~~~~~~~~~-----~-------------~~~-----~---i~~~~~i~~~~~~---~---v~~----- 178 (227)
+.+.+ .+|+++++.+..... . ... . +.....+.++.++ . +.+
T Consensus 302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 381 (485)
T TIGR01317 302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEW 381 (485)
T ss_pred HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEe
Confidence 77764 689999864321100 0 001 0 1123334444321 1 221
Q ss_pred ---cCCC-----------EEeccEEEEcccccc-ccccccccCCccccccc
Q psy810 179 ---QDDT-----------SHPFDSIIYCTGAYK-YSYKLTFLATFSISMAM 214 (227)
Q Consensus 179 ---~~g~-----------~i~~D~vi~atG~~~-~~~~~~~l~~~gl~~~~ 214 (227)
.+|. ++++|.||+|+| +. |++ .|++..+++++.
T Consensus 382 ~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG-~~~p~~--~~~~~~gl~~~~ 429 (485)
T TIGR01317 382 KKSQDGKWQFVEIPGSEEVFEADLVLLAMG-FVGPEQ--ILLDDFGVKKTR 429 (485)
T ss_pred ccCCCCCccceecCCceEEEECCEEEEccC-cCCCcc--ccccccCcccCC
Confidence 1232 589999999999 86 889 999988888764
No 79
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.10 E-value=1.8e-09 Score=100.10 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=85.3
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeec--------------CCCCC--CCCCCCCeEEEEccCccHHHHHHHH
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS--------------HDYRV--PDPFRDQNVLLVGFGPSGVDIAMDI 137 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~--------------~~~~~--~~~~~~~~v~VvGgG~~g~e~a~~l 137 (227)
..||+|++|||++. +..+++||.+. .|. +.. ....+ .....+++|+|||||++|+|+|..+
T Consensus 411 ~~~DavilAtGa~~-~~~l~i~g~~~-~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a 487 (654)
T PRK12769 411 EDYDAVFVGVGTYR-SMKAGLPNEDA-PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTA 487 (654)
T ss_pred hcCCEEEEeCCCCC-CCCCCCCCCCC-CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHH
Confidence 46999999999943 34457777543 221 110 00101 1124689999999999999999988
Q ss_pred HhccC-eEEEEeecCcc-ccc-------cCCCceE--EcCCccEEe--CCc----eEEc---------C---------CC
Q psy810 138 EKVAK-NVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLL--QDS----VVFQ---------D---------DT 182 (227)
Q Consensus 138 ~~~~~-~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~--~~~----v~~~---------~---------g~ 182 (227)
.+.+. +||+++++... +.. .....|. ....+.++. +++ |.+. + |+
T Consensus 488 ~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~ 567 (654)
T PRK12769 488 LRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGS 567 (654)
T ss_pred HHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCc
Confidence 88864 79999985432 110 0012333 334555553 221 2321 1 22
Q ss_pred --EEeccEEEEccccccccccccccCCccccccc
Q psy810 183 --SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 183 --~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
.+++|.||+|+| +.|+. ..+++..+++++.
T Consensus 568 ~~~i~~D~Vi~AiG-~~p~~-~~~~~~~gl~~~~ 599 (654)
T PRK12769 568 EFVMPADAVIMAFG-FNPHG-MPWLESHGVTVDK 599 (654)
T ss_pred eEEEECCEEEECcc-CCCCc-cccccccCCcCCC
Confidence 489999999999 99984 1588888888875
No 80
>PRK13984 putative oxidoreductase; Provisional
Probab=99.04 E-value=8.5e-10 Score=101.41 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=77.2
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC---------CC-CCCCCCeEEEEccCccHHHHHHHHHhcc--
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR---------VP-DPFRDQNVLLVGFGPSGVDIAMDIEKVA-- 141 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~---------~~-~~~~~~~v~VvGgG~~g~e~a~~l~~~~-- 141 (227)
..||+||+|||+. .|+.+++||.+.. + ++...++. +. ....+++|+|||||++|+|+|..+.+.+
T Consensus 367 ~~yD~vilAtGa~-~~r~l~i~G~~~~-g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~ 443 (604)
T PRK13984 367 EKHDAVFLSTGFT-LGRSTRIPGTDHP-D-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKM 443 (604)
T ss_pred hcCCEEEEEcCcC-CCccCCCCCcCCc-C-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhcccc
Confidence 5799999999993 2567788886531 1 11111110 11 1224789999999999999999998874
Q ss_pred ----CeEEEEeecC--ccccc-------cCCCceEE--cCCccEEeC-C----ceEEc--------CC-----------C
Q psy810 142 ----KNVFLSHHIS--VAFKH-------QIGDSVVQ--KPDIKRLLQ-D----SVVFQ--------DD-----------T 182 (227)
Q Consensus 142 ----~~Vtli~~~~--~~~~~-------~~~~~i~~--~~~i~~~~~-~----~v~~~--------~g-----------~ 182 (227)
.+|+++.... ..+.. .....|.+ ...+.++.. + ++.+. +| .
T Consensus 444 ~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~ 523 (604)
T PRK13984 444 EYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQI 523 (604)
T ss_pred ccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceE
Confidence 3788875321 11110 01123333 223434421 1 12221 12 3
Q ss_pred EEeccEEEEccccccccccccccCC
Q psy810 183 SHPFDSIIYCTGAYKYSYKLTFLAT 207 (227)
Q Consensus 183 ~i~~D~vi~atG~~~~~~~~~~l~~ 207 (227)
++++|.||+|+| +.||+ .+|..
T Consensus 524 ~i~aD~Vi~aiG-~~p~~--~~l~~ 545 (604)
T PRK13984 524 IVEADMVVEAIG-QAPDY--SYLPE 545 (604)
T ss_pred EEECCEEEEeeC-CCCCh--hhhhh
Confidence 589999999999 99999 88763
No 81
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.95 E-value=1.4e-08 Score=93.87 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=85.2
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeec-----------CCCCC-----CCCCCCCeEEEEccCccHHHHHHHH
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS-----------HDYRV-----PDPFRDQNVLLVGFGPSGVDIAMDI 137 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~-----------~~~~~-----~~~~~~~~v~VvGgG~~g~e~a~~l 137 (227)
..||+|++|||+.. +..+++||.+. .+. +.. ..... .....+++|+|+|+|++|+++|..+
T Consensus 394 ~~~DaV~latGa~~-~~~~~i~g~~~-~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~ 470 (639)
T PRK12809 394 SEYDAVFIGVGTYG-MMRADLPHEDA-PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTS 470 (639)
T ss_pred hcCCEEEEeCCCCC-CCCCCCCCCcc-CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHH
Confidence 56999999999943 34567787643 221 110 00111 1234689999999999999999988
Q ss_pred Hhcc-CeEEEEeecCcc-ccc-------cCCCceE--EcCCccEEeC--Cc----eEE---c------C---------CC
Q psy810 138 EKVA-KNVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DS----VVF---Q------D---------DT 182 (227)
Q Consensus 138 ~~~~-~~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~----v~~---~------~---------g~ 182 (227)
.+.| ++||+++|+... +.. ....+|+ ....+.++.. ++ +.+ . + |+
T Consensus 471 ~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~ 550 (639)
T PRK12809 471 IRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGS 550 (639)
T ss_pred HHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence 8887 589999985432 111 0012333 3344555531 21 211 1 1 22
Q ss_pred --EEeccEEEEcccccccc-ccccccCCccccccc
Q psy810 183 --SHPFDSIIYCTGAYKYS-YKLTFLATFSISMAM 214 (227)
Q Consensus 183 --~i~~D~vi~atG~~~~~-~~~~~l~~~gl~~~~ 214 (227)
.+++|.||+|+| +.|+ . .|+++.+++++.
T Consensus 551 ~~~i~aD~Vi~AiG-~~p~~~--~~~~~~gl~~~~ 582 (639)
T PRK12809 551 EFELPADVLIMAFG-FQAHAM--PWLQGSGIKLDK 582 (639)
T ss_pred eEEEECCEEEECcC-CCCCcc--ccccccCcccCC
Confidence 589999999999 9986 4 588888888764
No 82
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.85 E-value=2e-08 Score=91.72 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=82.8
Q ss_pred EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-----CCCCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEe
Q psy810 75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-----RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSH 148 (227)
Q Consensus 75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~ 148 (227)
.||+|++|||+.. +..+.++|.+. .+. +....+ .......+++|+|+|+|++|++.+..+.+++ ++|++++
T Consensus 222 ~~D~Vi~AtG~~~-~~~~~i~g~~~-~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~ 298 (564)
T PRK12771 222 EFDAVFVAIGAQL-GKRLPIPGEDA-AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVY 298 (564)
T ss_pred hCCEEEEeeCCCC-CCcCCCCCCcc-CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEE
Confidence 5899999999943 23446777542 221 111111 1113445899999999999999999888887 7899998
Q ss_pred ecCcc-ccc-------cCCCceE--EcCCccEEeCC--c---e---EE------c-------CC--CEEeccEEEEcccc
Q psy810 149 HISVA-FKH-------QIGDSVV--QKPDIKRLLQD--S---V---VF------Q-------DD--TSHPFDSIIYCTGA 195 (227)
Q Consensus 149 ~~~~~-~~~-------~~~~~i~--~~~~i~~~~~~--~---v---~~------~-------~g--~~i~~D~vi~atG~ 195 (227)
|.+.. +.. .....++ ....+.++..+ + + .+ . +| ..+++|.||+|+|
T Consensus 299 r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G- 377 (564)
T PRK12771 299 RRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG- 377 (564)
T ss_pred ecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC-
Confidence 85421 110 0112333 34456666432 1 1 11 1 22 2589999999999
Q ss_pred ccccccccccCC-cccc
Q psy810 196 YKYSYKLTFLAT-FSIS 211 (227)
Q Consensus 196 ~~~~~~~~~l~~-~gl~ 211 (227)
+.|+. +++++ .+++
T Consensus 378 ~~p~~--~~~~~~~gl~ 392 (564)
T PRK12771 378 QDIDS--AGLESVPGVE 392 (564)
T ss_pred CCCch--hhhhhccCcc
Confidence 99999 89885 5665
No 83
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.71 E-value=1.5e-07 Score=84.02 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=52.3
Q ss_pred EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC----------CCC--CCCCCCeEEEEccCccHHHHHHHHHhc-
Q psy810 74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY----------RVP--DPFRDQNVLLVGFGPSGVDIAMDIEKV- 140 (227)
Q Consensus 74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~----------~~~--~~~~~~~v~VvGgG~~g~e~a~~l~~~- 140 (227)
..||+||+|||+.. +..+++||.+. .+ ++...++ +.. ....+++|+|||+|++|+|+|..|.+.
T Consensus 113 ~~yDaVIlAtGa~~-~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~ 189 (491)
T PLN02852 113 DLYHVVVLAYGAES-DRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPT 189 (491)
T ss_pred hhCCEEEEecCCCC-CCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCc
Confidence 47999999999931 25678888653 11 1111111 111 112589999999999999999998764
Q ss_pred --------------------cCeEEEEeecCc
Q psy810 141 --------------------AKNVFLSHHISV 152 (227)
Q Consensus 141 --------------------~~~Vtli~~~~~ 152 (227)
.++|+++.|+..
T Consensus 190 ~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 190 DELASTDIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred cccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 357999999763
No 84
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=8.3e-08 Score=64.71 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=44.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--Cc--eEEcC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--DS--VVFQD 180 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~~--v~~~~ 180 (227)
+++|||||++|+|+|..|.+.+.+||++++++..+ ..++. ++..+..+.++.. ++ |+++|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~ 79 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLED 79 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEec
Confidence 58999999999999999999999999999966544 22321 3344556777753 33 66666
Q ss_pred C
Q psy810 181 D 181 (227)
Q Consensus 181 g 181 (227)
|
T Consensus 80 g 80 (80)
T PF00070_consen 80 G 80 (80)
T ss_dssp S
T ss_pred C
Confidence 5
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.61 E-value=2.3e-07 Score=87.87 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=41.7
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC-------------CCCCCCCeEEEEccCccHHHHHHHH
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV-------------PDPFRDQNVLLVGFGPSGVDIAMDI 137 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~v~VvGgG~~g~e~a~~l 137 (227)
...||+|+||||++ .|..+++||.+. .+ ++...++.. .....+++|+|||||++|+|+|...
T Consensus 495 ~~gyDAV~IATGA~-kpr~L~IPGeda-~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtA 569 (1028)
T PRK06567 495 DLGFDHIAFCIGAG-QPKVLDIENFEA-KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATES 569 (1028)
T ss_pred hcCCCEEEEeCCCC-CCCCCCCCCccC-CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHH
Confidence 46799999999994 367889999764 11 222211110 0111368999999999999999833
No 86
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.34 E-value=2.5e-06 Score=71.15 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=58.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc--------ccCC--------------------CceEEcCCcc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK--------HQIG--------------------DSVVQKPDIK 169 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~--------~~~~--------------------~~i~~~~~i~ 169 (227)
+|+|||+|++|+.+|..|.+.+.+|+|+++... .+. ..++ -++.. ..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997431 000 0011 02222 3455
Q ss_pred EEeCC----ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810 170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
+++.+ .+.+.+|..+.+|.+|+||| ..|+. +.++
T Consensus 81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG-~~~~~--~~i~ 118 (300)
T TIGR01292 81 KVDLSDRPFKVKTGDGKEYTAKAVIIATG-ASARK--LGIP 118 (300)
T ss_pred EEEecCCeeEEEeCCCCEEEeCEEEECCC-CCccc--CCCC
Confidence 55443 25666778899999999999 88876 5554
No 87
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.25 E-value=5e-06 Score=72.75 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=57.5
Q ss_pred CCeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-cc-ccCC----------------------CceEE--cCCcc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-FK-HQIG----------------------DSVVQ--KPDIK 169 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~~-~~~~----------------------~~i~~--~~~i~ 169 (227)
.++|+|||||+.|+.+|..|++.+. +|+|+.+.... +. ..++ .++.. ...+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999998864 79999764211 10 0010 12332 23455
Q ss_pred EEeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810 170 RLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 170 ~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
.++.+ .+++.+|..+.+|.+|+||| ..|+.
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATG-s~~~~ 114 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATG-AAARP 114 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccC-CCCCC
Confidence 55443 37788899999999999999 88754
No 88
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.18 E-value=1.1e-05 Score=71.54 Aligned_cols=85 Identities=9% Similarity=0.287 Sum_probs=57.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-c-----c----ccCC---------------Cce--EEcCCcc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-F-----K----HQIG---------------DSV--VQKPDIK 169 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~-----~----~~~~---------------~~i--~~~~~i~ 169 (227)
++|+|||||+.|+.+|..|++.+. +|+|+++++.. + . ...+ .++ .....+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 479999999999999999998754 89999985431 0 0 0000 122 2344566
Q ss_pred EEeC--CceEEcC---CCEEe--ccEEEEccccccccccccccC
Q psy810 170 RLLQ--DSVVFQD---DTSHP--FDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 170 ~~~~--~~v~~~~---g~~i~--~D~vi~atG~~~~~~~~~~l~ 206 (227)
+++. +.+++.+ |..+. +|.+|+||| .+|+. +-++
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG-~~~~~--~~i~ 121 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATG-ARPII--PPIK 121 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCC-CCCCC--CCCC
Confidence 6653 3466654 56666 999999999 88876 5443
No 89
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.08 E-value=1.4e-05 Score=69.53 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCccccc-cCC-----------------------CceEE-cCCccE
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFKH-QIG-----------------------DSVVQ-KPDIKR 170 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~~-~~~-----------------------~~i~~-~~~i~~ 170 (227)
.++|+|+|||+.|+.++..|.+.. .+|||+.++...+-. .+. .++.. ...|..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 478999999999999999999874 789999996533210 010 01222 234666
Q ss_pred EeC--CceEEcCCCEEeccEEEEccccccccc
Q psy810 171 LLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 171 ~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
++. ..|++.++..+++|.+++++| +.+++
T Consensus 83 ID~~~k~V~~~~~~~i~YD~LVvalG-s~~~~ 113 (405)
T COG1252 83 IDRDAKKVTLADLGEISYDYLVVALG-SETNY 113 (405)
T ss_pred EcccCCEEEeCCCccccccEEEEecC-CcCCc
Confidence 654 358898988999999999999 98887
No 90
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.04 E-value=1.9e-05 Score=69.79 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=57.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc-cccC---------------------C-CceE-EcCCccEEe
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF-KHQI---------------------G-DSVV-QKPDIKRLL 172 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~-~~~~---------------------~-~~i~-~~~~i~~~~ 172 (227)
..++|+|||||+.|+.+|..|.+...+|||+.+++... ...+ . .++. +...|..++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id 88 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVD 88 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEE
Confidence 35789999999999999999876567899998854321 1100 0 1122 123466665
Q ss_pred C--CceEE----------cCCCEEeccEEEEccccccccc
Q psy810 173 Q--DSVVF----------QDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 173 ~--~~v~~----------~~g~~i~~D~vi~atG~~~~~~ 200 (227)
. +.|.+ .+|.++++|.+|+||| ..++.
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG-s~~~~ 127 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG-ARPNT 127 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCC-cccCC
Confidence 4 34666 4566899999999999 88776
No 91
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.02 E-value=1.7e-05 Score=68.41 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=58.5
Q ss_pred eEEEEccCccHHHHHHHHHhc---cCeEEEEeecCcc-ccccCC----------------------CceEE-cCCccEEe
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISVA-FKHQIG----------------------DSVVQ-KPDIKRLL 172 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~~-~~~~~~----------------------~~i~~-~~~i~~~~ 172 (227)
+|+|||||+.|+.+|..+.+. ..+|+|+++.... +...++ .+++. ...+.+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999998643 5689999885421 111011 02222 23455665
Q ss_pred C--CceEEcCCCEEeccEEEEccccccccccccccC
Q psy810 173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
. +.|.+.+|+++.+|.+|+||| ..++. +.++
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG-~~~~~--~~i~ 113 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVG-STTPL--SGVE 113 (364)
T ss_pred cccCEEEECCCCcccccEEEEccC-CCCCC--CCCC
Confidence 3 348888998999999999999 98887 5544
No 92
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.99 E-value=3.6e-05 Score=68.27 Aligned_cols=81 Identities=14% Similarity=0.283 Sum_probs=55.3
Q ss_pred CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-ccc-cCC------------------------Cc--eEEcCCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-FKH-QIG------------------------DS--VVQKPDI 168 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~~~-~~~------------------------~~--i~~~~~i 168 (227)
++|+|||||+.|+.+|..|++. ..+|+|+.+.+.. +.. .++ .+ +.....|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999876 5689999985321 110 000 12 2234556
Q ss_pred cEEeCC--ceEEcCC---C--EEeccEEEEccccccccc
Q psy810 169 KRLLQD--SVVFQDD---T--SHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 169 ~~~~~~--~v~~~~g---~--~i~~D~vi~atG~~~~~~ 200 (227)
.+++.+ .|.+.++ + ++.+|.+|+||| .+|+.
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtG-s~~~~ 119 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPG-ASANS 119 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCC-CCCCC
Confidence 666543 3666543 2 368999999999 88876
No 93
>PRK09897 hypothetical protein; Provisional
Probab=97.95 E-value=0.00012 Score=66.28 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred eeEEeCceEEEEEEeeCCCCcEEEecCC-eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC--CCCCCCC
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLHFANEE-ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV--PDPFRDQ 119 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~-~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 119 (227)
+.++.+++|++++..+ +.+.+.+++ +..+.+|+||+|||... |..+ ++... +....|.. .....+.
T Consensus 124 V~v~~~~~V~~I~~~~---~g~~V~t~~gg~~i~aD~VVLAtGh~~-p~~~--~~~~~-----yi~~pw~~~~~~~i~~~ 192 (534)
T PRK09897 124 VAVYESCQVTDLQITN---AGVMLATNQDLPSETFDLAVIATGHVW-PDEE--EATRT-----YFPSPWSGLMEAKVDAC 192 (534)
T ss_pred EEEEECCEEEEEEEeC---CEEEEEECCCCeEEEcCEEEECCCCCC-CCCC--hhhcc-----ccCCCCcchhhcCCCCC
Confidence 4667788999997643 568888754 46899999999999822 2211 11111 11122221 1123468
Q ss_pred eEEEEccCccHHHHHHHHHhc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV 140 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~ 140 (227)
+|+|+|.|-++++++..|...
T Consensus 193 ~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 193 NVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 999999999999999888755
No 94
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.91 E-value=6.3e-05 Score=65.32 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=56.8
Q ss_pred CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-ccc-cCC-----------------------CceE--EcCCcc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-FKH-QIG-----------------------DSVV--QKPDIK 169 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~~~-~~~-----------------------~~i~--~~~~i~ 169 (227)
++++|||+|+.|+.+|..|++. ..+||++.+.+.. ++. .++ .++. .+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 4799999999999999999876 3479999874321 110 010 1222 234566
Q ss_pred EEeCCc-eEEcCCCEEeccEEEEccccccccccccccC
Q psy810 170 RLLQDS-VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 170 ~~~~~~-v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
+++.+. ....++..+.+|.+|+||| ..|.. +-++
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG-~~~~~--p~i~ 117 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATG-ASAFV--PPIP 117 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCC-CCCCC--CCCC
Confidence 665432 3334677899999999999 88876 5444
No 95
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.90 E-value=6.9e-05 Score=71.52 Aligned_cols=86 Identities=9% Similarity=0.056 Sum_probs=59.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhc----cCeEEEEeecCccc-cc-----cCC-----------------CceEE--cCCc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHISVAF-KH-----QIG-----------------DSVVQ--KPDI 168 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~~~~-~~-----~~~-----------------~~i~~--~~~i 168 (227)
.++|+|||+|+.|+.+|..|.+. +.+|||+.+.+... +. .+. .+|.. ...+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999765 35899998754321 10 000 12332 3446
Q ss_pred cEEeCC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810 169 KRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 169 ~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
..++.. .|++.+|..+++|.+|+||| ..|.. +-++
T Consensus 83 ~~Id~~~~~V~~~~G~~i~yD~LVIATG-s~p~~--p~ip 119 (847)
T PRK14989 83 ITINRQEKVIHSSAGRTVFYDKLIMATG-SYPWI--PPIK 119 (847)
T ss_pred EEEeCCCcEEEECCCcEEECCEEEECCC-CCcCC--CCCC
Confidence 666543 36778888999999999999 88876 5444
No 96
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=8.1e-05 Score=70.70 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=59.0
Q ss_pred EEEEccCccHHHHHHHHHhcc---CeEEEEeecCcc-cc-----ccCC------------------CceE--EcCCccEE
Q psy810 121 VLLVGFGPSGVDIAMDIEKVA---KNVFLSHHISVA-FK-----HQIG------------------DSVV--QKPDIKRL 171 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~~~~-~~-----~~~~------------------~~i~--~~~~i~~~ 171 (227)
|+|||+|..|+.+|..|.+.+ .+|||+.+.+.. ++ ..+. .+++ ....+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 489999885432 11 0010 1233 34456677
Q ss_pred eCC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810 172 LQD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206 (227)
Q Consensus 172 ~~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~ 206 (227)
+.+ .|++.+|.++.+|.+|+||| ..|.. +-++
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATG-s~p~~--p~ip 114 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATG-SYPFI--LPIP 114 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCC-CCcCC--CCCC
Confidence 643 47888888999999999999 88876 5444
No 97
>KOG2755|consensus
Probab=97.82 E-value=3.8e-05 Score=62.43 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=62.1
Q ss_pred EEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC-----CCCeEEEEcc
Q psy810 52 AEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF-----RDQNVLLVGF 126 (227)
Q Consensus 52 ~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~v~VvGg 126 (227)
.++..|+. ....+.+++|..+.|++|.++||. +|.+ ..+|.+. +++.-.+-.+++.+ ..|.|+|+|.
T Consensus 71 ~~v~~~~s--~ehci~t~~g~~~ky~kKOG~tg~--kPkl-q~E~~n~---~Iv~irDtDsaQllq~kl~kaK~Vlilgn 142 (334)
T KOG2755|consen 71 NDVVTWDS--SEHCIHTQNGEKLKYFKLCLCTGY--KPKL-QVEGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGN 142 (334)
T ss_pred Hhhhhhcc--ccceEEecCCceeeEEEEEEecCC--Ccce-eecCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEec
Confidence 34444444 667889999999999999999999 8886 4444322 34443333333322 3689999999
Q ss_pred CccHHHHHHHHHhccCeEEEEee
Q psy810 127 GPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 127 G~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
|-+++|++.++.-+ .|+|...
T Consensus 143 Ggia~El~yElk~~--nv~w~ik 163 (334)
T KOG2755|consen 143 GGIAMELTYELKIL--NVTWKIK 163 (334)
T ss_pred CchhHHHHHHhhcc--eeEEEec
Confidence 99999999999754 5777655
No 98
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.80 E-value=4.4e-05 Score=73.59 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+++|+|||+|++|+-+|..|++.|.+||++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 4899999999999999999999999999999984
No 99
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.74 E-value=0.00012 Score=62.88 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=29.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||++|+-+|..+.+.|.+|+|+++.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~ 35 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKG 35 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecC
Confidence 46999999999999999999999999999884
No 100
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.69 E-value=0.0002 Score=62.17 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=25.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||||.+|+|.|..+++.|.+|.|+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence 389999999999999999999999999954
No 101
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.69 E-value=8.3e-05 Score=58.52 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=46.3
Q ss_pred EEEccCccHHHHHHHHHhccCe-EEEEeecCcc---cc-----------c------cCC---------------------
Q psy810 122 LLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVA---FK-----------H------QIG--------------------- 159 (227)
Q Consensus 122 ~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~---~~-----------~------~~~--------------------- 159 (227)
+|||+|++|+-+|..|.+.+.+ |+++++.+.. +. . .++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999988 9999986321 10 0 000
Q ss_pred ----------------CceEEcCCccEEeCCc----eEEcCCCEEeccEEEEccccc--cccc
Q psy810 160 ----------------DSVVQKPDIKRLLQDS----VVFQDDTSHPFDSIIYCTGAY--KYSY 200 (227)
Q Consensus 160 ----------------~~i~~~~~i~~~~~~~----v~~~~g~~i~~D~vi~atG~~--~~~~ 200 (227)
-++...+.|.++..++ |+++++.++.+|.||+||| . .|+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG-~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATG-HYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE----SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeee-ccCCCCc
Confidence 0334456676665332 7788888899999999999 6 5555
No 102
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.68 E-value=3.3e-05 Score=60.61 Aligned_cols=85 Identities=15% Similarity=0.330 Sum_probs=55.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCcc-c--------------------cc----cC-----CCceEE--cCC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA-F--------------------KH----QI-----GDSVVQ--KPD 167 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~-~--------------------~~----~~-----~~~i~~--~~~ 167 (227)
+|+|||||++|+.+|..|.+.+.+|+++.+.+.. + .. .+ ..+++. ...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 5899999999999999999999999999763311 0 00 00 012222 344
Q ss_pred ccEEeCC-c------eE-----EcCCCEEeccEEEEccccccccccccccCC
Q psy810 168 IKRLLQD-S------VV-----FQDDTSHPFDSIIYCTGAYKYSYKLTFLAT 207 (227)
Q Consensus 168 i~~~~~~-~------v~-----~~~g~~i~~D~vi~atG~~~~~~~~~~l~~ 207 (227)
+.++... . +. ..++.++.+|.+|+||| ..|+. +.++.
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG-~~~~~--~~i~g 129 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG-SRPRT--PNIPG 129 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST-EEEEE--ESSTT
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCc-cccce--eecCC
Confidence 4555322 1 11 12445689999999999 99887 65554
No 103
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.65 E-value=0.00031 Score=63.65 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC-cccc------cc--CC-----------------CceE--EcCCcc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS-VAFK------HQ--IG-----------------DSVV--QKPDIK 169 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~-~~~~------~~--~~-----------------~~i~--~~~~i~ 169 (227)
...|+|||||+.|+.+|..+++.|.+|+|+..+. ..+. .. .+ .++. ....|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 4679999999999999999999999999996421 0010 00 00 0222 334566
Q ss_pred EEeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810 170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
.+..+ .+.+.+|..+.+|.+|+||| ..+..
T Consensus 292 ~I~~~~~~~~v~~~~g~~i~~d~lIlAtG-a~~~~ 325 (515)
T TIGR03140 292 KIETEDGLIVVTLESGEVLKAKSVIVATG-ARWRK 325 (515)
T ss_pred EEEecCCeEEEEECCCCEEEeCEEEECCC-CCcCC
Confidence 66432 25667888899999999999 87765
No 104
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.62 E-value=0.00014 Score=69.92 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||||++|+.+|..|++.|.+|+++.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 57899999999999999999999999999998843
No 105
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.57 E-value=0.00017 Score=62.07 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+++|..|.+.+.+|+++.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 47899999999999999999999999999999854
No 106
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.56 E-value=0.00036 Score=61.88 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|+.|+.+|..+++.|.+|+|+++++
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 59999999999999999999999999999853
No 107
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.53 E-value=0.00049 Score=62.42 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=56.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec--Ccc-----cccc--C-------------------CCceEEcCCcc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI--SVA-----FKHQ--I-------------------GDSVVQKPDIK 169 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~--~~~-----~~~~--~-------------------~~~i~~~~~i~ 169 (227)
...|+|||||+.|+.+|..+++.|.+|+++..+ ... +... + .-.+.....+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 347999999999999999999999999999652 000 0000 0 01222234565
Q ss_pred EEeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810 170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
.+..+ .+.+.+|..+.+|.||+||| ..++.
T Consensus 291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG-~~~r~ 324 (517)
T PRK15317 291 KLEPAAGLIEVELANGAVLKAKTVILATG-ARWRN 324 (517)
T ss_pred EEEecCCeEEEEECCCCEEEcCEEEECCC-CCcCC
Confidence 66432 25667888899999999999 87765
No 108
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.47 E-value=0.00021 Score=63.66 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46899999999999999999999999999999843
No 109
>PRK06116 glutathione reductase; Validated
Probab=97.45 E-value=0.00049 Score=61.24 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|+.+|..+++.|.+|+|+++.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4999999999999999999999999999973
No 110
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.45 E-value=0.00044 Score=61.74 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHh--------------------c-cCeEEEEeecCc
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEK--------------------V-AKNVFLSHHISV 152 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~--------------------~-~~~Vtli~~~~~ 152 (227)
..++++|||.|+.|+++|..|.. . -.+|+++.|+++
T Consensus 196 ~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp 252 (506)
T PTZ00188 196 NFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGF 252 (506)
T ss_pred CCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCH
Confidence 35789999999999999997532 1 357999999853
No 111
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.45 E-value=0.00025 Score=63.26 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|||+|++|+.+|..|.+.+.+|+|+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 357899999999999999999999999999998853
No 112
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.00012 Score=65.57 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCC----CEEeccEEEE
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDD----TSHPFDSIIY 191 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g----~~i~~D~vi~ 191 (227)
+.+++|+|+|+|.+|+++|..|.+.|.+|+++.+++......+ ...+...++.+..| ....+|.||+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~---------~~~l~~~gv~~~~~~~~~~~~~~D~Vv~ 84 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRAL---------AAILEALGATVRLGPGPTLPEDTDLVVT 84 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHH---------HHHHHHcCCEEEECCCccccCCCCEEEE
Confidence 4578999999999999999999999999999986432110000 00111112222111 1246999999
Q ss_pred cccccccccccccc---CCccccc
Q psy810 192 CTGAYKYSYKLTFL---ATFSISM 212 (227)
Q Consensus 192 atG~~~~~~~~~~l---~~~gl~~ 212 (227)
++| ..|+. +++ ...|+++
T Consensus 85 s~G-i~~~~--~~~~~a~~~gi~v 105 (480)
T PRK01438 85 SPG-WRPDA--PLLAAAADAGIPV 105 (480)
T ss_pred CCC-cCCCC--HHHHHHHHCCCee
Confidence 999 99998 764 3445444
No 113
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.43 E-value=4.1e-05 Score=60.08 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=49.8
Q ss_pred cceeEEeCceEEEEEEeeCC--CCcE---EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCc-ccceeeecCC-CCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVP--TKCL---HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADL-FRGLQMHSHD-YRVP 113 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~--~~~~---~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~-~~~~~~~~~~-~~~~ 113 (227)
.++.+++++++.+++..... .... .....++.++.||+||+|||+ .|..|++||.+. +....+.... +...
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPGEEVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTTTTTECBTTSEEHHHHHHTH
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCCCcccccccccccccccccc
Confidence 44566777888888753320 0011 224567889999999999998 788889998632 1111222222 1122
Q ss_pred CCCCCCeEEEEc
Q psy810 114 DPFRDQNVLLVG 125 (227)
Q Consensus 114 ~~~~~~~v~VvG 125 (227)
.. ..++|+|||
T Consensus 149 ~~-~~~~v~VvG 159 (201)
T PF07992_consen 149 LE-SPKRVAVVG 159 (201)
T ss_dssp SS-TTSEEEEES
T ss_pred cc-ccccccccc
Confidence 22 245999999
No 114
>PRK10262 thioredoxin reductase; Provisional
Probab=97.43 E-value=0.00051 Score=58.26 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
+.++|+|||||++|+.+|..+.+.+.+++++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~ 37 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG 37 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 467899999999999999999999988998864
No 115
>PRK06847 hypothetical protein; Provisional
Probab=97.42 E-value=0.00084 Score=57.98 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4679999999999999999999999999998753
No 116
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.0011 Score=58.34 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=65.0
Q ss_pred CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCC----CCCCCCCCeEE
Q psy810 48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYR----VPDPFRDQNVL 122 (227)
Q Consensus 48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~----~~~~~~~~~v~ 122 (227)
.++..++.+.+ ....+.+.+.+|.+..||-+|+|||. .+..++.-.. .+.+. .+....|. +.-+ .+.+|+
T Consensus 126 ~~~a~~~~~~~-n~~~~~~~~~~g~~~~ad~~Vlatgh--~~~~~~~~~~-~~~~~~~~ia~~~~~~~ld~v~-~~drVl 200 (474)
T COG4529 126 REEATSVRQDT-NAGGYLVTTADGPSEIADIIVLATGH--SAPPADPAAR-DLKGSPRLIADPYPANALDGVD-ADDRVL 200 (474)
T ss_pred eeeeecceecc-CCceEEEecCCCCeeeeeEEEEeccC--CCCCcchhhh-ccCCCcceeccccCCccccccc-CCCceE
Confidence 35566655542 34678889999999999999999999 3333332111 12211 11111121 1112 245699
Q ss_pred EEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810 123 LVGFGPSGVDIAMDIEKVAK--NVFLSHHIS 151 (227)
Q Consensus 123 VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~ 151 (227)
|+|.|.+.++....|.+.|. +||+++|++
T Consensus 201 i~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 201 IVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred EecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 99999999999999999864 699999975
No 117
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.41 E-value=0.00026 Score=67.03 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5789999999999999999999999999999873
No 118
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.41 E-value=0.00084 Score=59.73 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|+.|..+|..+++.|.+|+|+++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~ 33 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEE 33 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 489999999999999999999999999987
No 119
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.40 E-value=0.00082 Score=59.65 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||+.|+.+|..+++.+.+|+|+++.
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~ 35 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQS 35 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCC
Confidence 5999999999999999999999999999984
No 120
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.38 E-value=0.00025 Score=62.30 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=24.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||||++|+=+|..+++.|.+|+|+++.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~ 33 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK 33 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 48999999999999999999999999999863
No 121
>PRK12831 putative oxidoreductase; Provisional
Probab=97.37 E-value=0.00029 Score=63.02 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 35789999999999999999999999999999874
No 122
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.35 E-value=0.00033 Score=62.91 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHh--ccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEK--VAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~--~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+.+|..|++ .+.+|+|+++.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46889999999999999999986 689999999954
No 123
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.35 E-value=0.0011 Score=57.53 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=57.9
Q ss_pred EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--------cccC--------------------------------
Q psy810 121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--------KHQI-------------------------------- 158 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--------~~~~-------------------------------- 158 (227)
|+|||+|.+|..+|..|.+. +.+|.++++.+..- ...+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 79999999999999999986 88999998853110 0000
Q ss_pred ------------------CCceEEcCCccEEeCCceEEcCCCEEeccEEEEcccccccc
Q psy810 159 ------------------GDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYS 199 (227)
Q Consensus 159 ------------------~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~ 199 (227)
+..+..+..|.+++.+++++++|.++.+|.||.|.| ..+.
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G-~~s~ 139 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRG-FKPS 139 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCC-CCCC
Confidence 012333455666666778888999999999999999 7764
No 124
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.34 E-value=0.0003 Score=63.00 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46899999999999999999999999999999843
No 125
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.33 E-value=0.00043 Score=64.53 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4789999999999999999999999999999984
No 126
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.30 E-value=0.00045 Score=66.17 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+++|+|||+|++|+.+|.+|++.|.+||++.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999873
No 127
>PRK07236 hypothetical protein; Provisional
Probab=97.29 E-value=0.0015 Score=56.93 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=31.5
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999864
No 128
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.29 E-value=0.00053 Score=66.27 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||||++|+.+|..|++.|.+|+|+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36799999999999999999999999999998743
No 129
>KOG3851|consensus
Probab=97.28 E-value=0.00069 Score=56.84 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=65.0
Q ss_pred CeEEEEccCccHHHHHHHHHhc-c-CeEEEEeecCccccc----------------------cCCCc-eEEcCCccEEeC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHISVAFKH----------------------QIGDS-VVQKPDIKRLLQ 173 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~~~~~~~----------------------~~~~~-i~~~~~i~~~~~ 173 (227)
-+|+|||||.-|+-+|..+.+. + .+|-+++..++.+-+ ..|.+ -.++..+++++.
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P 119 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP 119 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence 3699999999999999988876 3 367777765443210 01111 112345777754
Q ss_pred --CceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810 174 --DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM 214 (227)
Q Consensus 174 --~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~ 214 (227)
+.|.+++|++|.+|.+|+|+| .+-++ .-++.+--.++.
T Consensus 120 ~~N~v~t~gg~eIsYdylviA~G-iql~y--~~IkGl~Eal~t 159 (446)
T KOG3851|consen 120 DKNTVVTRGGEEISYDYLVIAMG-IQLDY--GKIKGLVEALDT 159 (446)
T ss_pred CcCeEEccCCcEEeeeeEeeeee-ceecc--chhcChHhhccC
Confidence 569999999999999999999 99998 666644444443
No 130
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.26 E-value=0.00041 Score=62.10 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47899999999999999999999999999998843
No 131
>PRK06370 mercuric reductase; Validated
Probab=97.23 E-value=0.0011 Score=59.19 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999999999874
No 132
>KOG1399|consensus
Probab=97.22 E-value=0.002 Score=57.14 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=31.8
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++|+|||+|++|+-.|..|.+.|.+|++++|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 5789999999999999999999999999999964
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.22 E-value=0.00064 Score=66.20 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 3689999999999999999999999999999984
No 134
>KOG1800|consensus
Probab=97.21 E-value=0.00082 Score=57.54 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=53.5
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-------CC----CCCCCCCeEEEEccCccHHHHHHHHHhc-
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-------RV----PDPFRDQNVLLVGFGPSGVDIAMDIEKV- 140 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-------~~----~~~~~~~~v~VvGgG~~g~e~a~~l~~~- 140 (227)
.-.||+||||.|+.. ++..++||.+. .+ ++....+ .. ..++.+++|+|||.|+.++++|..|...
T Consensus 106 ~~~ydavvLaYGa~~-dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~ 182 (468)
T KOG1800|consen 106 TDNYDAVVLAYGADG-DRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQ 182 (468)
T ss_pred hhcccEEEEEecCCC-CcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCc
Confidence 457999999999954 56679999752 11 1111111 11 2345688999999999999999988752
Q ss_pred ---------------------cCeEEEEeecCc
Q psy810 141 ---------------------AKNVFLSHHISV 152 (227)
Q Consensus 141 ---------------------~~~Vtli~~~~~ 152 (227)
-++|+|+.|+++
T Consensus 183 ~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 183 GPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred cccccccCCcHHHHhhhhcCCcceEEEEeccCc
Confidence 146899998753
No 135
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.20 E-value=0.0017 Score=57.93 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 4999999999999999999999999999973
No 136
>PRK06753 hypothetical protein; Provisional
Probab=97.20 E-value=0.0017 Score=56.02 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||||.+|+=+|..|++.|.+|+++++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999864
No 137
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.19 E-value=0.0018 Score=57.81 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|++|+.+|..+++.|.+|+|+++.
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~ 37 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERY 37 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 5999999999999999999999999999984
No 138
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0024 Score=56.78 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.9
Q ss_pred CeEEEEccCccHHHHHHHHHhccCe-EEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~ 151 (227)
..|+|||+|.+|+-+|..|.+.+.. +.++++.+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 4699999999999999999999887 99998863
No 139
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.14 E-value=0.00095 Score=60.68 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|+|+|||+|.+|+-.|..+.+.|-+++++++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 789999999999999999999999999999864
No 140
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.14 E-value=0.00061 Score=61.31 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46899999999999999999999999999998843
No 141
>PRK14694 putative mercuric reductase; Provisional
Probab=97.05 E-value=0.0037 Score=56.00 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|..|..+|..+++.|.+|.++++.
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 5999999999999999999999999999974
No 142
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.04 E-value=0.00079 Score=62.62 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 47899999999999999999999999999999854
No 143
>KOG0399|consensus
Probab=97.03 E-value=0.002 Score=62.07 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=45.9
Q ss_pred eEEEcCEEEEccCCCCCCCCCCCCCCCc----ccceeeecCC--CC----C--CCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810 72 TLHYNLLQSLPSSHNSVPNIPSYEGADL----FRGLQMHSHD--YR----V--PDPFRDQNVLLVGFGPSGVDIAMDIEK 139 (227)
Q Consensus 72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~----~~~~~~~~~~--~~----~--~~~~~~~~v~VvGgG~~g~e~a~~l~~ 139 (227)
..-+.|+||+|+|+. .|+=.++||-+. |....+|... .. + ....++|+|+|||||.+|-++...-.+
T Consensus 1867 l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1867 LKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVR 1945 (2142)
T ss_pred HhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchh
Confidence 456789999999994 456567887653 2111122110 00 1 123368999999999999998776666
Q ss_pred cc-CeEE
Q psy810 140 VA-KNVF 145 (227)
Q Consensus 140 ~~-~~Vt 145 (227)
.| +.|-
T Consensus 1946 hg~~sv~ 1952 (2142)
T KOG0399|consen 1946 HGCKSVG 1952 (2142)
T ss_pred hccceec
Confidence 54 3443
No 144
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.03 E-value=0.0012 Score=58.87 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---CceEEc-----CCccEEeCCceEEcCCCE---
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---DSVVQK-----PDIKRLLQDSVVFQDDTS--- 183 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---~~i~~~-----~~i~~~~~~~v~~~~g~~--- 183 (227)
...+++|+|||+|+.|+..|..|++.|..||++.+.+ ..-..+. ..+... ..+..+...++.+..+..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~-~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~ 198 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA-LDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR 198 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC-CCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence 3457999999999999999999999999999998843 2211110 011111 123333334444432211
Q ss_pred --------EeccEEEEccccccccc
Q psy810 184 --------HPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 184 --------i~~D~vi~atG~~~~~~ 200 (227)
-.+|.|++|+|+..|+.
T Consensus 199 ~it~~~L~~e~Dav~l~~G~~~~~~ 223 (457)
T COG0493 199 DITLEELLKEYDAVFLATGAGKPRP 223 (457)
T ss_pred cCCHHHHHHhhCEEEEeccccCCCC
Confidence 25799999999556654
No 145
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.03 E-value=0.0024 Score=57.21 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 36 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLETVCVERY 36 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 5999999999999999999999999999974
No 146
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.03 E-value=0.0019 Score=57.81 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++++|||+|+.|+.+|..+++.+.+|+|+.+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~ 33 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD 33 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 46999999999999999999999999999974
No 147
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.00 E-value=0.0029 Score=56.60 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|+.|...|..+++.|.+|+|+++
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 599999999999999999999999999996
No 148
>PRK07588 hypothetical protein; Provisional
Probab=96.97 E-value=0.0037 Score=54.47 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=29.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999998753
No 149
>PRK05868 hypothetical protein; Validated
Probab=96.95 E-value=0.0042 Score=53.94 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999853
No 150
>PLN02546 glutathione reductase
Probab=96.94 E-value=0.0037 Score=57.23 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|..|...|..+++.|.+|.|+++
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 499999999999999999999999999995
No 151
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.93 E-value=0.0053 Score=53.46 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+|+|||||.+|+=+|..|.+.|.+|+++++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4679999999999999999999999999999863
No 152
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.92 E-value=0.00064 Score=63.38 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46899999999999999999999999999998843
No 153
>PTZ00058 glutathione reductase; Provisional
Probab=96.91 E-value=0.0061 Score=55.84 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|..|.-.|..+++.|.+|.|+++.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5999999999999999999999999999974
No 154
>KOG1336|consensus
Probab=96.87 E-value=0.0071 Score=53.25 Aligned_cols=90 Identities=13% Similarity=0.270 Sum_probs=60.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCcccc---ccCC----------------------CceEEcCCc
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFK---HQIG----------------------DSVVQKPDI 168 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~---~~~~----------------------~~i~~~~~i 168 (227)
+..++++|+|+|..|.=++..+.+.+ -+++++.+. ..+. ..++ -.+..++.+
T Consensus 72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~-~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v 150 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE-YLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSV 150 (478)
T ss_pred cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc-ccCcccchhcccceeeccccccccChhhHhhcCceEEEccee
Confidence 34689999999999877777887764 367887763 2211 0011 133345666
Q ss_pred cEEe--CCceEEcCCCEEeccEEEEccccccccccccccCCcccc
Q psy810 169 KRLL--QDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSIS 211 (227)
Q Consensus 169 ~~~~--~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~ 211 (227)
.+++ ..++.+.+|..+++|.+++||| ..+. +++..|.+
T Consensus 151 ~~~D~~~K~l~~~~Ge~~kys~LilATG-s~~~----~l~~pG~~ 190 (478)
T KOG1336|consen 151 VKADLASKTLVLGNGETLKYSKLIIATG-SSAK----TLDIPGVE 190 (478)
T ss_pred EEeeccccEEEeCCCceeecceEEEeec-Cccc----cCCCCCcc
Confidence 6664 3569999999999999999999 7443 44545555
No 155
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.87 E-value=0.0064 Score=54.28 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6899999999999999999999999999984
No 156
>PRK09126 hypothetical protein; Provisional
Probab=96.86 E-value=0.0055 Score=53.29 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||.+|+-+|..|++.|.+|+++++..
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 59999999999999999999999999999854
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.85 E-value=0.0048 Score=56.53 Aligned_cols=31 Identities=13% Similarity=0.418 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||+.|+.+|..+++.+.+|+|+.+.
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 5999999999999999999999999999874
No 158
>PLN02463 lycopene beta cyclase
Probab=96.85 E-value=0.0052 Score=54.76 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-.|+|||||.+|.-+|..|++.|.+|.++++.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 369999999999999999999999999998743
No 159
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.83 E-value=0.0042 Score=55.33 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=49.7
Q ss_pred EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC------------C--CCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810 73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD------------Y--RVPDPFRDQNVLLVGFGPSGVDIAMDIE 138 (227)
Q Consensus 73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~------------~--~~~~~~~~~~v~VvGgG~~g~e~a~~l~ 138 (227)
.-.||+|++|||+. .|+..++||.+. .+ +....+ + .......+|+|+|||+|.+++|++....
T Consensus 206 ~~e~Dav~l~~G~~-~~~~l~i~g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~ 282 (457)
T COG0493 206 LKEYDAVFLATGAG-KPRPLDIPGEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTAL 282 (457)
T ss_pred HHhhCEEEEecccc-CCCCCCCCCcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHh
Confidence 34569999999994 466668888652 11 011111 1 0112224599999999999999998888
Q ss_pred hccC-eEEEEee
Q psy810 139 KVAK-NVFLSHH 149 (227)
Q Consensus 139 ~~~~-~Vtli~~ 149 (227)
+.|. +|+.+.+
T Consensus 283 r~Ga~~v~~~~~ 294 (457)
T COG0493 283 RLGAKSVTCFYR 294 (457)
T ss_pred hcCCeEEEEecc
Confidence 8865 7888864
No 160
>PLN02507 glutathione reductase
Probab=96.81 E-value=0.007 Score=54.72 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|+.|.-.|..+.+.|.+|.|+++
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 499999999999999999999999999995
No 161
>PRK14727 putative mercuric reductase; Provisional
Probab=96.80 E-value=0.0071 Score=54.33 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.++|||+|..|..+|..+++.|.+|+++++.
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 36999999999999999999999999999984
No 162
>KOG0399|consensus
Probab=96.78 E-value=0.0011 Score=63.80 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=33.7
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
...|++|+|||.|++|+-.|.-|.+.|..|++++|.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 3468999999999999999999999999999999954
No 163
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0026 Score=57.01 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||..|+|.|...+++|.++.|++...
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 59999999999999999999999999987643
No 164
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.76 E-value=0.0057 Score=54.83 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|..+|..+++.|.+|.|+++.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 5999999999999999999999999999974
No 165
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.76 E-value=0.0075 Score=52.54 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||.+|+=+|..|++.|.+|+|+++.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 46999999999999999999999999999985
No 166
>PRK13984 putative oxidoreductase; Provisional
Probab=96.75 E-value=0.0019 Score=59.65 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=31.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++|+|||+|.+|+.+|..|.+.|.+|+++.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46889999999999999999999999999998743
No 167
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.70 E-value=0.0018 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+.++++|+|||||..|..-+..|.+.|.+||++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 346899999999999999999999999999999884
No 168
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.70 E-value=0.0074 Score=53.89 Aligned_cols=31 Identities=13% Similarity=0.335 Sum_probs=28.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4899999999999999999999999999973
No 169
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.66 E-value=0.009 Score=52.48 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~ 151 (227)
+|+|||||..|+=+|..|.+.| .+|+++++.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999987 4999999863
No 170
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.65 E-value=0.0093 Score=52.00 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~ 151 (227)
.|+|||||.+|+=+|..|++.| .+|+++++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4899999999999999999985 8999999853
No 171
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.62 E-value=0.0089 Score=52.14 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||.+|+=+|..|.+.|.+|+|+++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 46999999999999999999999999999996
No 172
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.011 Score=50.00 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=50.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCe-EEEEeecCcc--c-----cccCCC---------------------ceEE-cCCcc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVA--F-----KHQIGD---------------------SVVQ-KPDIK 169 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~--~-----~~~~~~---------------------~i~~-~~~i~ 169 (227)
.|+|||+|+.|+-.|.++.+.+.+ +.++...... + ...+|. .++. ...+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~ 84 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVE 84 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEE
Confidence 599999999999999999999877 5555442111 0 000110 1111 13345
Q ss_pred EEeCCc----eEEcCCCEEeccEEEEccccccccc
Q psy810 170 RLLQDS----VVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 170 ~~~~~~----v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
+++..+ |.+.+|. +.++.||+||| ..+..
T Consensus 85 ~v~~~~~~F~v~t~~~~-~~ak~vIiAtG-~~~~~ 117 (305)
T COG0492 85 KVELEGGPFKVKTDKGT-YEAKAVIIATG-AGARK 117 (305)
T ss_pred EEeecCceEEEEECCCe-EEEeEEEECcC-CcccC
Confidence 554432 5556666 99999999999 77665
No 173
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.61 E-value=0.0031 Score=40.89 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=26.2
Q ss_pred EEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 123 LVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 123 VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999954
No 174
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.60 E-value=0.011 Score=51.45 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||..|.=+|..|.+.|.+|+++++.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6999999999999999999999999999975
No 175
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.57 E-value=0.0046 Score=47.63 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+.+++++|+|+|.+ |.-+|..|.+.+.+|+++.|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 567899999999986 777999999998899999984
No 176
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.57 E-value=0.012 Score=51.62 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||.+|+=+|..|.+.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999984
No 177
>PRK06834 hypothetical protein; Provisional
Probab=96.57 E-value=0.013 Score=52.82 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-.|+|||+|.+|+=+|..|.+.|.+|+++++.+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999853
No 178
>KOG2495|consensus
Probab=96.56 E-value=0.0076 Score=52.51 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..++|+|+|.|+.|+-++..|-.---+|++++.+.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 46899999999999999999988888999998864
No 179
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.55 E-value=0.008 Score=53.66 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|+..|..+++.|.+|.|+++.
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~ 36 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE 36 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 5999999999999999999999999999874
No 180
>PRK07045 putative monooxygenase; Reviewed
Probab=96.54 E-value=0.013 Score=50.94 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 369999999999999999999999999998754
No 181
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.50 E-value=0.0076 Score=53.74 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|..|..+|..+++.|.+|.|+++
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 489999999999999999999999999997
No 182
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.50 E-value=0.013 Score=51.02 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=55.4
Q ss_pred EEEEccCccHHHHHHHH--HhccCeEEEEeecCcc-ccc---------cCC-----------------------------
Q psy810 121 VLLVGFGPSGVDIAMDI--EKVAKNVFLSHHISVA-FKH---------QIG----------------------------- 159 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l--~~~~~~Vtli~~~~~~-~~~---------~~~----------------------------- 159 (227)
|+|||+|.+|.-+|..| .+.+.+|.++++.... +.. .+.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 7778999999874322 000 000
Q ss_pred -------------------CceEEcCCccEEeCCc----eEEcCCCEEeccEEEEcccccccc
Q psy810 160 -------------------DSVVQKPDIKRLLQDS----VVFQDDTSHPFDSIIYCTGAYKYS 199 (227)
Q Consensus 160 -------------------~~i~~~~~i~~~~~~~----v~~~~g~~i~~D~vi~atG~~~~~ 199 (227)
..+.....|.++..++ +++.+|.++.++.||-|.| ..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g-~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARG-PSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCC-cccc
Confidence 0122344566665433 5788999999999999999 7654
No 183
>KOG2311|consensus
Probab=96.50 E-value=0.0092 Score=52.79 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||..|+|.|...++.|++-+|++..-
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 59999999999999999999999988887753
No 184
>PRK06184 hypothetical protein; Provisional
Probab=96.48 E-value=0.014 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=30.4
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-.|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999853
No 185
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.48 E-value=0.0025 Score=58.45 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+++|+|||+|++|+-+|..|.+.|.+|+++.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 35889999999999999999999999999999874
No 186
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.46 E-value=0.013 Score=52.54 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999999999874
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=96.46 E-value=0.02 Score=52.41 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=29.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|+.|..+|..+++.|.+|.|+++.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 36999999999999999999999999999974
No 188
>KOG2755|consensus
Probab=96.38 E-value=0.0042 Score=50.83 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=54.2
Q ss_pred EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccccc----------------------cCCCceE-EcCCccEEeC--
Q psy810 121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAFKH----------------------QIGDSVV-QKPDIKRLLQ-- 173 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~~~----------------------~~~~~i~-~~~~i~~~~~-- 173 (227)
.+|||||-.|+-+|.-|+.. ..+|.|++.++ .+.. ++..++. ...++..+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass-~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~e 80 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS-FVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWDSSE 80 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH-HHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhcccc
Confidence 68999999999999999886 56888887743 1110 0111111 1122444433
Q ss_pred CceEEcCCCEEeccEEEEccccccccc
Q psy810 174 DSVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 174 ~~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
+.+++++|..+.++.+.+|+| ++|..
T Consensus 81 hci~t~~g~~~ky~kKOG~tg-~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTG-YKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecC-CCcce
Confidence 348899999999999999999 99876
No 189
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.35 E-value=0.022 Score=51.35 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=28.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.++|||+|..|...|..+++.|.+|.++.+
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 489999999999999999999999999985
No 190
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.31 E-value=0.019 Score=51.89 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|+.|...|..+.+.|.+|.|+.+
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 499999999999999999999999999995
No 191
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.30 E-value=0.022 Score=43.20 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=24.7
Q ss_pred EEEccCccHHHHHHHHHhcc-----CeEEEEeec
Q psy810 122 LLVGFGPSGVDIAMDIEKVA-----KNVFLSHHI 150 (227)
Q Consensus 122 ~VvGgG~~g~e~a~~l~~~~-----~~Vtli~~~ 150 (227)
+|||+|++|+-++..|.+.. .+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 59999999999999998873 479999874
No 192
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.26 E-value=0.0062 Score=46.38 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
+..+++|+|||||..|..-+..|...+.+|+++..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45689999999999999999999999999999954
No 193
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.23 E-value=0.028 Score=50.67 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=28.1
Q ss_pred eEEEEccCccHHHHHHHHHhc-cCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV-AKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~ 149 (227)
.|+|||+|..|...|..+++. |.+|.|+++
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 499999999999999999997 899999996
No 194
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.22 E-value=0.011 Score=51.09 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=39.8
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPN 90 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~ 90 (227)
.++.++++++|.++++.+ ..|.+++.+++.+.||++|+|||..+.|.
T Consensus 124 ~gV~i~~~~~v~~v~~~~---~~f~l~t~~g~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 124 LGVTIRTRSRVSSVEKDD---SGFRLDTSSGETVKCDSLILATGGKSWPK 170 (408)
T ss_pred cCcEEEecceEEeEEecC---ceEEEEcCCCCEEEccEEEEecCCcCCCC
Confidence 467999999999998744 68999999998899999999999744553
No 195
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.22 E-value=0.018 Score=56.35 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=30.3
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
...|+|||+|++|+..|..+.+.+.+|+|+...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~ 195 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ 195 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 457999999999999999999999999999874
No 196
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.20 E-value=0.03 Score=51.99 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhc---cCeEEEEeecCc------cccccCC------------------Cce--EEcCCc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISV------AFKHQIG------------------DSV--VQKPDI 168 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~------~~~~~~~------------------~~i--~~~~~i 168 (227)
.++++|||.|..|.-+...+... ..+||++...+. .++..++ .+| .....+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 36799999999999999988885 346888865321 1122121 133 334567
Q ss_pred cEEeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810 169 KRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 169 ~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
..++.+ .|+.+.|..+.+|.+|+||| +.|..
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATG-S~pfi 115 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATG-SYPFI 115 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecC-ccccc
Confidence 677654 37777888999999999999 55544
No 197
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.11 E-value=0.0068 Score=53.43 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=30.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||||.+|+++|..|++.|.+|+|+++++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999998643
No 198
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.08 E-value=0.0031 Score=47.28 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=28.9
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|+|+|+|.+|.-+|..|.+.+.+|+++.|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999955
No 199
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.05 E-value=0.0086 Score=47.57 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
++.+++|+|||||.+|...+..|...|.+|+++.+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 35689999999999999999999999999999976
No 200
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.05 E-value=0.0085 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
+.+++|+|||||.+|..-+..|.+.|.+||++..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 5689999999999999999999999999999977
No 201
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.03 E-value=0.014 Score=48.82 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=33.5
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.|++++|||.|. .|.-+|..|.+.+..||+++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 56799999999988 99999999999999999999853
No 202
>PLN02697 lycopene epsilon cyclase
Probab=96.02 E-value=0.028 Score=51.18 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=29.1
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+-+|..+++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 36999999999999999999999999999764
No 203
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.98 E-value=0.033 Score=51.26 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+++|..+++.+.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 3899999999999999999999999999874
No 204
>PRK07846 mycothione reductase; Reviewed
Probab=95.89 E-value=0.048 Score=48.68 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=23.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.++|||+|..|..+|.. ..|.+|.|+++.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 38999999988876654 459999999974
No 205
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.87 E-value=0.0091 Score=52.75 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+|+|||||.+|+++|..|++.|.+|+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999986443
No 206
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.79 E-value=0.014 Score=52.36 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCeEEEEccCccHHHHHHHHH-hccCeEEEEeecCc
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIE-KVAKNVFLSHHISV 152 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~-~~~~~Vtli~~~~~ 152 (227)
.+++|+|||+|++|+.+|..|. +.+.+|+|+++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4689999999999999999765 56899999999653
No 207
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.71 E-value=0.015 Score=51.28 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=31.3
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCC
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPN 90 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~ 90 (227)
+.+++++++++|.+|.+.+. ..|.|.++++..+.+|+||||||..+.|.
T Consensus 121 ~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 121 RLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVILATGGKSYPK 169 (409)
T ss_dssp HHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEEE----SSSGG
T ss_pred HcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEEEecCCCCccc
Confidence 34679999999999986553 45999996667899999999999854443
No 208
>KOG0404|consensus
Probab=95.69 E-value=0.057 Score=43.41 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=53.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------------cCCCceE------------------
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------------QIGDSVV------------------ 163 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------------~~~~~i~------------------ 163 (227)
.+|+|||.|+.|.-.|.++++..-+-.|++.- ..+. .+|+.|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~--~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGM--MANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeee--eccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 57999999999999999998876566666541 1111 1232221
Q ss_pred E-cCCccEEeCCc---eEEcCCCEEeccEEEEccccccccccccccCCc
Q psy810 164 Q-KPDIKRLLQDS---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATF 208 (227)
Q Consensus 164 ~-~~~i~~~~~~~---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~ 208 (227)
+ ...|.+++-.+ ..++|...+.+|.||+||| ..... -+|...
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atG-AsAkR--l~~pg~ 132 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATG-ASAKR--LHLPGE 132 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecc-cceee--eecCCC
Confidence 1 12233333222 4455777889999999999 55554 455544
No 209
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.64 E-value=0.023 Score=48.07 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=31.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
.+|+|+|+|.+|.=+|..|.+.|.+|+++.|+...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~ 37 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQR 37 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHH
Confidence 46999999999999999999999999999995433
No 210
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.50 E-value=0.019 Score=48.60 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=28.1
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||.+|+=+|..|++.|.+|+++++++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 58999999999999999999999999999964
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.48 E-value=0.069 Score=47.68 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=28.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.++|||+|..|.-.|..+++.|.+|.+++++
T Consensus 6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~ 36 (454)
T COG1249 6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKG 36 (454)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeec
Confidence 4899999999999999999999889999985
No 212
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.069 Score=47.37 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=26.9
Q ss_pred CeEEEEccCccHHHHHHHHHhc---cCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~ 150 (227)
.+|+|||+|++|+.+|.+|.+. ...|+++.++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~ 36 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR 36 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence 4799999999999999999986 2239999875
No 213
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.44 E-value=0.022 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.8
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..++|+|||+|++|+-+|..|.+.|.+|+++++++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35789999999999999999999999999999853
No 214
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.44 E-value=0.04 Score=42.04 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.-++..|.+.+..||+.+...
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 56799999999885 89999999999999999998843
No 215
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.033 Score=46.59 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+++|+|.|. .|-=+|..|.+.+..||+++|+.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 356799999999998 88889999998888999999843
No 216
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.34 E-value=0.022 Score=49.95 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.4
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999853
No 217
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.013 Score=52.11 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc-cccccCCCceEEcCCccEEeCCceEEcCC---CEEeccEEEE
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV-AFKHQIGDSVVQKPDIKRLLQDSVVFQDD---TSHPFDSIIY 191 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~-~~~~~~~~~i~~~~~i~~~~~~~v~~~~g---~~i~~D~vi~ 191 (227)
+.+++++|+|+|.+|..+|..|++.|.+|+++.+... .+.... ..+. ...+. +...+. ..-.+|.||.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~~l~-~~~~~------~~~~~~~~~~~~~~d~vv~ 74 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEAL-EELG-ELGIE------LVLGEYPEEFLEGVDLVVV 74 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHHH-hcCCE------EEeCCcchhHhhcCCEEEE
Confidence 3578999999999999999999999999999988431 111000 0000 00111 111111 1125899999
Q ss_pred cccccccccccccc
Q psy810 192 CTGAYKYSYKLTFL 205 (227)
Q Consensus 192 atG~~~~~~~~~~l 205 (227)
++| ..++. +.+
T Consensus 75 ~~g-~~~~~--~~~ 85 (450)
T PRK14106 75 SPG-VPLDS--PPV 85 (450)
T ss_pred CCC-CCCCC--HHH
Confidence 999 88877 654
No 218
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.037 Score=46.52 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+|+|||.| .+|.-+|..|.+.|..||+++++.
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 35679999999996 999999999999999999998843
No 219
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.28 E-value=0.042 Score=45.89 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.|++|+|||.|.+ |.-+|..|.+.+..||+.+++
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 567999999999998 999999999999999998774
No 220
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.25 E-value=0.02 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|+|+|+.|.-+|..|+..+.+|+|+.|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999954
No 221
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.22 E-value=0.03 Score=45.05 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
..+++|+|||||..|..=+..|.+.+.+||++..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 3578999999999999999999999999999977
No 222
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.20 E-value=0.025 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-+|.+|++.|.+|+|+++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999986
No 223
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.17 E-value=0.025 Score=50.02 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.6
Q ss_pred CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~ 151 (227)
++|+|||||.+|+-+|..|.+.| .+|+|++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 47999999999999999999977 7899999853
No 224
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.16 E-value=0.037 Score=46.43 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
+|+|+|+|..|.-+|..|.+.|.+|+++.| ...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~ 34 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKR 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHH
Confidence 589999999999999999999999999998 543
No 225
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.02 Score=46.22 Aligned_cols=72 Identities=19% Similarity=0.380 Sum_probs=46.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCc---eEEcCCCEEeccEEEEccc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDS---VVFQDDTSHPFDSIIYCTG 194 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~---v~~~~g~~i~~D~vi~atG 194 (227)
++++|+|+|..|..+|..|.+.|.+|+++.+.+..........+ ....+.+++ =.+.+-.-..+|+++.+||
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 46899999999999999999999999999985544332122111 111111111 1122223347999999999
No 226
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.14 E-value=0.076 Score=45.00 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=30.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|+|+|.+|.-+|..|++.|.+|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 579999999999999999999999999999953
No 227
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.13 E-value=0.037 Score=46.90 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=45.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC-EEeccEEEEccc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT-SHPFDSIIYCTG 194 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~-~i~~D~vi~atG 194 (227)
++.|+|+|.+|.=++..|.+.+.+|+++.|.+ .........+.+...-...........+.. ..++|.||+++=
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~-~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR-RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH-HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 68999999999999999999998999999944 322212223333221111110112222222 237999999887
No 228
>KOG0029|consensus
Probab=95.11 E-value=0.031 Score=50.47 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=32.0
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..++|+|||+|.+|+-+|..|.+.|-+|++++.++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 35689999999999999999999999999998854
No 229
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.04 E-value=0.051 Score=41.15 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=30.2
Q ss_pred CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810 48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH 85 (227)
Q Consensus 48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~ 85 (227)
+.+|+.|+..+ +.|.+.+.++..+.+|+||||||.
T Consensus 121 ~~~V~~i~~~~---~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 121 RAEVVDIRRDD---DGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred eeEEEEEEEcC---CcEEEEECCCCEEEeCEEEECCCC
Confidence 57899888755 668888888899999999999996
No 230
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.02 E-value=0.029 Score=48.38 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|.+|++.|.+|+|++++
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999999999875
No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.029 Score=50.01 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=31.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+||+|+|+|..|+-+|.+|+..|-+|||+++++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 589999999999999999999999999999954
No 232
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.99 E-value=0.03 Score=49.71 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=31.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++++|||||.+|++.|..|+..|-+|+|+++.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4789999999999999999999999999999854
No 233
>PRK07233 hypothetical protein; Provisional
Probab=94.98 E-value=0.029 Score=49.23 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=29.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||+|.+|+-.|..|.+.|.+|+|+++.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999999854
No 234
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.96 E-value=0.067 Score=39.91 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEc
Q psy810 114 DPFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYC 192 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~a 192 (227)
.++.||+++|+|.+.. |--+|..|.+.+..|++.+++...+.. ..-.+|.|+.|
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~-------------------------~v~~ADIVvsA 78 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS-------------------------KVHDADVVVVG 78 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH-------------------------HHhhCCEEEEe
Confidence 3667999999997765 456888888889999999873321100 11358888888
Q ss_pred cccccccccccccCC
Q psy810 193 TGAYKYSYKLTFLAT 207 (227)
Q Consensus 193 tG~~~~~~~~~~l~~ 207 (227)
+| ..+-.+..|++.
T Consensus 79 tg-~~~~i~~~~ikp 92 (140)
T cd05212 79 SP-KPEKVPTEWIKP 92 (140)
T ss_pred cC-CCCccCHHHcCC
Confidence 88 554334456653
No 235
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.95 E-value=0.033 Score=46.02 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=29.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999863
No 236
>PRK06996 hypothetical protein; Provisional
Probab=94.94 E-value=0.12 Score=45.17 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.3
Q ss_pred CeEEEEccCccHHHHHHHHHhcc----CeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA----KNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~----~~Vtli~~~ 150 (227)
..|+|||||.+|.-+|..|++.| .+|+|+++.
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 46999999999999999999876 479999885
No 237
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.94 E-value=0.016 Score=44.19 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+.||+++|+|=|..|--+|..|+.+|.+|++....+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3468999999999999999999999999999998843
No 238
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.78 E-value=0.075 Score=46.29 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=34.4
Q ss_pred ccceeEEeCceEEEEEEeeCCCCcEEEecC-CeeEEEcCEEEEccCCCCCCC
Q psy810 40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANE-EITLHYNLLQSLPSSHNSVPN 90 (227)
Q Consensus 40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~-~~~~~~~~~vilAtG~~~~p~ 90 (227)
+.++.++++++|.+|++ +.|.+.+. ++..+++|+||+|||+.+.|.
T Consensus 98 ~~gV~i~~~~~V~~i~~-----~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 98 EQGVQFHTRHRWIGWQG-----GTLRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred HCCCEEEeCCEEEEEeC-----CcEEEEECCCceEEecCEEEEcCCCccccc
Confidence 35789999999999832 45888764 334699999999999854333
No 239
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.75 E-value=0.035 Score=47.92 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=28.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999874
No 240
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.042 Score=44.04 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=33.5
Q ss_pred CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..++....|+|||+|++|+-.|.+|++.+-+|.+++|+
T Consensus 25 l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ 62 (262)
T COG1635 25 LLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK 62 (262)
T ss_pred HHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEee
Confidence 34455667999999999999999999999999999986
No 241
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.70 E-value=0.038 Score=48.31 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||||..|+=+|..|++.|.+|+++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 679999999999999999999999999999854
No 242
>PLN02268 probable polyamine oxidase
Probab=94.68 E-value=0.041 Score=48.63 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=30.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 369999999999999999999999999998854
No 243
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.064 Score=44.78 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+|+|||+| ..|.-+|..|.+.+..||+.+...
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t 191 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT 191 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence 35679999999999 789999999999999999987643
No 244
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.55 E-value=0.082 Score=46.95 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=53.6
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCE-----EeccEEE
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTS-----HPFDSII 190 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~-----i~~D~vi 190 (227)
+.+++|+|+|-|-+|.-+|..|.+.|.+|+++..+....+ .. .......++.+..|+. ..+|.|+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~--~~--------~~~~~~~~i~~~~g~~~~~~~~~~d~vV 74 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEG--LA--------AQPLLLEGIEVELGSHDDEDLAEFDLVV 74 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccc--hh--------hhhhhccCceeecCccchhccccCCEEE
Confidence 4489999999999999999999999999999976332210 00 1111122333434431 3589999
Q ss_pred Ecccccccccccccc
Q psy810 191 YCTGAYKYSYKLTFL 205 (227)
Q Consensus 191 ~atG~~~~~~~~~~l 205 (227)
...| ..++. +.+
T Consensus 75 ~SPG-i~~~~--p~v 86 (448)
T COG0771 75 KSPG-IPPTH--PLV 86 (448)
T ss_pred ECCC-CCCCC--HHH
Confidence 9999 99998 755
No 245
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.47 E-value=0.059 Score=43.06 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.+++|+|||||..|..=|..+.+.|.+|+++...
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 456899999999999999999999999999999874
No 246
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.47 E-value=0.046 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.4
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|+|||||.+|+=+|..|++.|.+|+|+++++
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 469999999999999999999999999999854
No 247
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.40 E-value=0.066 Score=39.55 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCc
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISV 152 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~ 152 (227)
.+.+++++|+|+|-+|--++..|...|. +|+++.|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 4568999999999999999999999875 5999999543
No 248
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.39 E-value=0.052 Score=45.47 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+|.|+|+|.+|.-+|..|.+.|.+|+++.|...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~ 34 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGA 34 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChH
Confidence 589999999999999999998999999998443
No 249
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.34 E-value=0.053 Score=47.02 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 59999999999999999999999999998753
No 250
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.09 Score=44.21 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
++.||+|+||| ++.+|.-+|..|.+.+..|+++++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~ 190 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS 190 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence 56799999999 999999999999999999999964
No 251
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.33 E-value=0.075 Score=46.52 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCeEEEEccCccHHHHHHHHHhc-c-CeEEEEeec
Q psy810 109 DYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHI 150 (227)
Q Consensus 109 ~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~ 150 (227)
.||.......-.|+|||||.+|+-+|.+|++. | .+|+|++++
T Consensus 21 ~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 21 AWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred ccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 46665544455799999999999999999986 7 589999885
No 252
>KOG1276|consensus
Probab=94.32 E-value=0.054 Score=47.38 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=38.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCe--EEEEeecCccccccCCCceEEcCCccE-EeCCceEEcCCC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKN--VFLSHHISVAFKHQIGDSVVQKPDIKR-LLQDSVVFQDDT 182 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~--Vtli~~~~~~~~~~~~~~i~~~~~i~~-~~~~~v~~~~g~ 182 (227)
.+++|+|+|||-+|+-+|.+|+++..+ |+|++.++ + .... |.. ..++++.++.|-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~-R----vGGw------irS~r~~ng~ifE~GP 67 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP-R----VGGW------IRSDRMQNGFIFEEGP 67 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC-c----ccce------eeeccCCCceeeccCC
Confidence 478999999999999999999999655 55677743 3 2222 222 345667776663
No 253
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.27 E-value=0.05 Score=47.73 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=46.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC--EEeccEEEEc
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT--SHPFDSIIYC 192 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~--~i~~D~vi~a 192 (227)
+.+++++|||+|.+|.-+|.+|.+.| .+|++..|.-.+-. .+.. ++...-+.+.+-. --++|.||.|
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~---------~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAK---------KLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHH---------HhCCeeecHHHHHHhhhhCCEEEEe
Confidence 45789999999999999999999987 68888888432211 0111 1111223333322 1379999999
Q ss_pred ccc
Q psy810 193 TGA 195 (227)
Q Consensus 193 tG~ 195 (227)
||+
T Consensus 246 Tsa 248 (414)
T COG0373 246 TSA 248 (414)
T ss_pred cCC
Confidence 994
No 254
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.25 E-value=0.055 Score=47.38 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+|+|||||.+|+-+|.+|++.+.+|+|+++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999999999999999985
No 255
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.25 E-value=0.056 Score=47.39 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||+|++|.-+|..+++.|.+|.|+++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 59999999999999999999999999999853
No 256
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.21 E-value=0.056 Score=46.64 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=29.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|.+|.=+|..|++.|.+|+++++..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999864
No 257
>PRK07208 hypothetical protein; Provisional
Probab=94.15 E-value=0.059 Score=48.24 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999843
No 258
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.14 E-value=0.066 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+|+|||||.+|+-+|.+|++.|.+|+++.+.
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence 357999999999999999999999999999875
No 259
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.13 Score=43.05 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.|++++|+|.|. .|.=+|..|.+.+..||+.++..
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T 193 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT 193 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC
Confidence 56799999999998 89999999999999999998843
No 260
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=94.10 E-value=0.06 Score=48.82 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|..++++|.+|.|+++.
T Consensus 8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5999999999999999999999999999985
No 261
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.09 E-value=0.07 Score=41.53 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|.|||+|.+|..+|..++..|.+|+|+.+.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999998854
No 262
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.08 E-value=0.06 Score=46.73 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=30.1
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 369999999999999999999999999999853
No 263
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.08 E-value=0.058 Score=49.79 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+++|..+++.|.+|.|+++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 4999999999999999999999999999885
No 264
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.13 Score=43.03 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.|++++|||.|. .|.=+|..|.+.+..||+.+..
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~ 197 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF 197 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence 56799999999998 8999999999999999999874
No 265
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=94.06 E-value=0.066 Score=42.86 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.-.|+|||+|++|+-+|..|++.+.+|.+++++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~ 49 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK 49 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecC
Confidence 346999999999999999999999999999985
No 266
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.03 E-value=0.061 Score=46.92 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|..|++. +.+|+|+++.
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~ 36 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE 36 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 599999999999999999998 9999999885
No 267
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.97 E-value=0.065 Score=46.10 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=28.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4899999999999999999999999999874
No 268
>PRK08244 hypothetical protein; Provisional
Probab=93.95 E-value=0.066 Score=48.24 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=29.9
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|.+|+-+|..|.+.|.+|+|+++.+
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 59999999999999999999999999999853
No 269
>PRK08013 oxidoreductase; Provisional
Probab=93.94 E-value=0.068 Score=46.76 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|+|||+|.+|.=+|..|++.|.+|+++++.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 369999999999999999999999999999854
No 270
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.94 E-value=0.071 Score=47.43 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.1
Q ss_pred CeEEEEccCccHHHHHHHHHhc----cCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~ 151 (227)
++|+|||+|.+|+-+|..|.+. |.+|+|+++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 4799999999999999999998 89999999854
No 271
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.94 E-value=0.067 Score=46.24 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=28.6
Q ss_pred EEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810 121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI 150 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~ 150 (227)
|+|||+|.+|+-+|..|++.| .+|+++++.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999999999999999999 999999885
No 272
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=93.87 E-value=0.071 Score=48.79 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|.+|++.|.+|+|+++.
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 5999999999999999999999999999985
No 273
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=93.83 E-value=0.082 Score=43.57 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.-.|+|||+|++|+-+|..+++.|.+|.++++..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4569999999999999999999999999999753
No 274
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.81 E-value=0.082 Score=46.18 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|||+|..|+=+|..|++.|.+|+|+++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999865
No 275
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.76 E-value=0.089 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 478999999999999999999999999999988743
No 276
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.73 E-value=0.29 Score=42.37 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=51.8
Q ss_pred EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--cccC-----------------CC-----ceE--EcCCccEEe
Q psy810 121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--KHQI-----------------GD-----SVV--QKPDIKRLL 172 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--~~~~-----------------~~-----~i~--~~~~i~~~~ 172 (227)
++|+|+|..|...|..+.+. ..+|+++.+....- ...+ +. ++. ..+.+..++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 47999999999999988875 56788776642110 0000 01 122 223455555
Q ss_pred C--CceEEcCCCEEeccEEEEccccccccc
Q psy810 173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~ 200 (227)
. ..+.+.+| .+.+|.+++||| ..+..
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatG-a~~~~ 108 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATG-ARPRP 108 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCC-CcccC
Confidence 3 34777788 889999999999 88876
No 277
>PRK06126 hypothetical protein; Provisional
Probab=93.73 E-value=0.074 Score=48.56 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=30.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|||||.+|+=+|..|++.|.+|+|+++..
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999863
No 278
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.73 E-value=0.08 Score=46.16 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=30.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 469999999999999999999999999999864
No 279
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.70 E-value=0.088 Score=43.34 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.-.|+|||+|.+|+-+|..+++.+.+|.++++..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3469999999999999999999999999999853
No 280
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.14 Score=42.84 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEee
Q psy810 114 DPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 114 ~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.++.||+++|||. |.+|.=+|..|.+.+..||+++.
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s 190 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS 190 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence 3567999999998 99999999999999999999865
No 281
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=93.65 E-value=0.08 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||||.+|.-+|..|++.|.+|+++++.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 36999999999999999999999999999875
No 282
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.65 E-value=0.074 Score=46.50 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=29.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||||.+|+=+|..|.+.|.+|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 59999999999999999999999999999853
No 283
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.61 E-value=0.074 Score=46.10 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+=+|..|++.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5999999999999999999999999999974
No 284
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.60 E-value=0.085 Score=44.80 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
.+|.|+|+|..|.-+|..+.+.+.+|+++.|++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence 4799999999999999999999999999999543
No 285
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.59 E-value=0.079 Score=49.63 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=30.1
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 47999999999999999999999999999885
No 286
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.59 E-value=0.084 Score=47.77 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=29.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999999999999985
No 287
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=93.58 E-value=0.083 Score=46.02 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|++|.-+|..|++.|.+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999985
No 288
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.57 E-value=0.15 Score=42.48 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.||+++|||.| ..|.=+|..|.+.+..||+.+..
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~ 190 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF 190 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 5679999999988 68889999999889999988763
No 289
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.55 E-value=0.1 Score=47.03 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=30.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||+|..|+-+|..|++.|.+|++++++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999853
No 290
>PRK06185 hypothetical protein; Provisional
Probab=93.53 E-value=0.087 Score=46.03 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=29.9
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||||.+|+=+|..|++.|.+|+|+++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 46999999999999999999999999999985
No 291
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.52 E-value=0.17 Score=41.98 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=31.1
Q ss_pred CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+..|++++|||.|++ |-=+|..|.+.+..||+.|++.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T 190 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT 190 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC
Confidence 567999999998886 4568999988899999998854
No 292
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=93.52 E-value=0.096 Score=45.67 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-+|..|++.|.+|+++.++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4899999999999999999889999999984
No 293
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.45 E-value=0.15 Score=43.90 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T 265 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT 265 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC
Confidence 56799999999766 56779999998899999998743
No 294
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.42 E-value=0.2 Score=44.72 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-.|+|||||++|.-+|..|++.|.+|.|+++..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 369999999999999999999999999999863
No 295
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.40 E-value=0.092 Score=46.69 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 48999999999999999999999999999853
No 296
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=93.40 E-value=0.097 Score=46.68 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=28.6
Q ss_pred CeEEEEccCccHHHHHHHHHhcc------CeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~~ 151 (227)
++|+|||+|.+|+-+|..|.+.+ .+|+|++.++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~ 40 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE 40 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence 47999999999999999998852 6899999853
No 297
>PRK07538 hypothetical protein; Provisional
Probab=93.39 E-value=0.097 Score=46.00 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=29.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||||..|+=+|..|.+.|.+|+++++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 59999999999999999999999999999853
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=93.35 E-value=0.11 Score=46.84 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.2
Q ss_pred CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~ 151 (227)
.+|+|||||.+|+-+|..|.+. |.+|++++.++
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~ 46 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4699999999999999999998 89999999853
No 299
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.32 E-value=0.13 Score=46.31 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+|+|||+|..|+=+|..|++.|.+|+++++.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~ 35 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKN 35 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEec
Confidence 357999999999999999999999999999973
No 300
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.32 E-value=0.2 Score=33.76 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~ 149 (227)
.+.+++++|+|.|.+|.-++..+.+. +.+|+++.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35678999999999999999999988 678888766
No 301
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.31 E-value=0.19 Score=38.95 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
......+++|.|+|-|.+|-++|..+..+|-+|+.+.|...
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 34566799999999999999999999999999999988543
No 302
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.26 E-value=0.095 Score=45.49 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=29.4
Q ss_pred CeEEEEccCccHHHHHHHHHhc---cCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~ 150 (227)
-+|+|||+|.+|+-+|..|++. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3699999999999999999998 9999999983
No 303
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.23 E-value=0.17 Score=43.28 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T 248 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT 248 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC
Confidence 56799999999776 57789999988889999998743
No 304
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=93.22 E-value=0.11 Score=45.19 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=28.2
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
|+|||+|.+|.-+|..|.+.|.+|+|+++.
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccC
Confidence 899999999999999999989999999975
No 305
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.21 E-value=0.18 Score=42.54 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=33.6
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEE-EecCCeeEEEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLH-FANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~-v~~~~~~~~~~~~vilAtG~~~ 87 (227)
.++.++.+++|.++...+ +.+. |.+.+++ +.+|+||+|+|.+.
T Consensus 160 ~Gv~i~~~~~V~~i~~~~---~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDG---GRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp TT-EEEESEEEEEEEEET---TEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhhccccccccchhhcc---cccccccccccc-cccceeEecccccc
Confidence 367899999999998644 5677 9999997 99999999999854
No 306
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.19 E-value=0.086 Score=47.55 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.8
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|+|||+|..|+-+|..|++.|.+|+|+++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 6899999999999999999999999999853
No 307
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=93.19 E-value=0.11 Score=48.46 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=29.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|..+++.|.+|.|+++.
T Consensus 73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 73 DVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 5999999999999999999999999999885
No 308
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=93.16 E-value=0.11 Score=45.92 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|.-+|..|++.|.+|.++++.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~ 37 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERG 37 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcC
Confidence 5999999999999999999999999999885
No 309
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.10 E-value=0.13 Score=45.10 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=29.8
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|++|.-+|..|++.|-+|.+++++.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence 59999999999999999999999999999864
No 310
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.94 E-value=0.17 Score=44.94 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---E--EeccEEE
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---S--HPFDSII 190 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~--i~~D~vi 190 (227)
+.+++++|+|.|-+|+..|..|.+.|.+|+++...... . .. ..+.+. ..++.+..|. . -.+|.||
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~-~--~~------~~l~~~-~~gi~~~~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP-E--RV------AQIGKM-FDGLVFYTGRLKDALDNGFDILA 72 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc-h--hH------HHHhhc-cCCcEEEeCCCCHHHHhCCCEEE
Confidence 34789999999999999999999999999988763221 0 00 001110 0133322221 1 2589999
Q ss_pred EccccccccccccccC
Q psy810 191 YCTGAYKYSYKLTFLA 206 (227)
Q Consensus 191 ~atG~~~~~~~~~~l~ 206 (227)
...| ..|+. +.+.
T Consensus 73 ~spg-i~~~~--p~~~ 85 (445)
T PRK04308 73 LSPG-ISERQ--PDIE 85 (445)
T ss_pred ECCC-CCCCC--HHHH
Confidence 9999 99888 7664
No 311
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.92 E-value=0.11 Score=45.94 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=25.3
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|+|||||.+|+-.|..+++.|.+|.|+++.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 8999999999999999999999999999864
No 312
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.91 E-value=0.28 Score=42.59 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=36.1
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV 88 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~ 88 (227)
++.+++++.|.+++..+ +.+.+.+.++..+.+|+||+|+|.|..
T Consensus 148 G~~i~~~~~V~~i~~~~---~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 148 RLTLHFNTEITSLERDG---EGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CcEEEeCCEEEEEEEcC---CeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 56889999999987533 568888888877999999999998653
No 313
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=92.91 E-value=0.12 Score=46.24 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|.+|++. |.+|+|+++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 599999999999999999997 8899999874
No 314
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.80 E-value=0.12 Score=47.15 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=30.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|+|||+|.+|+-+|..|.+.|.+|+++++..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999998864
No 315
>PRK10015 oxidoreductase; Provisional
Probab=92.79 E-value=0.14 Score=45.48 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=29.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|++|.=+|..|++.|.+|.++++..
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 59999999999999999999999999998853
No 316
>PRK07190 hypothetical protein; Provisional
Probab=92.68 E-value=0.14 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=29.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|++|+=+|..|.+.|.+|+++++.+
T Consensus 7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 69999999999999999999999999998864
No 317
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.67 E-value=0.089 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+|+|+|.|.+|+.+|..|.+.|.+|+++.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5899999999999999999999999999874
No 318
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=92.66 E-value=0.15 Score=47.76 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
...+|+|||||..|+=+|..|.+.|.+|++++|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3568999999999999999999999999999985
No 319
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.65 E-value=0.18 Score=44.57 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF 154 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~ 154 (227)
++|.|||.|.+|.-+|..|++.|.+|+.+.+.....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v 39 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAV 39 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 579999999999999999999999999998855433
No 320
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=92.62 E-value=0.14 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|+|||+|.+|+=+|..|.+.|.+|+++++..
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999864
No 321
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=92.59 E-value=0.16 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=29.5
Q ss_pred CeEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~ 150 (227)
++++|||||.+|+-.|..|.+.+ .+|+|++.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~ 34 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 47999999999999999999998 789999984
No 322
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.57 E-value=0.24 Score=39.22 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..++.+++++|+|.|.+|..+|..|.+.|.+|+++.+.
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34567899999999999999999999999999987764
No 323
>PLN02529 lysine-specific histone demethylase 1
Probab=92.56 E-value=0.16 Score=48.14 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=31.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..++|+|||+|.+|+.+|..|.+.|.+|++++.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 35789999999999999999999999999998854
No 324
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.52 E-value=0.16 Score=45.42 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
++.+++|+|||||..|..=+..|.+.+.+||++..
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 45689999999999999999999999999999976
No 325
>KOG2614|consensus
Probab=92.48 E-value=0.2 Score=43.72 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=30.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+|+|||||-.|+-.|..|.+.|-+|.+++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 579999999999999999999999999998754
No 326
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.47 E-value=0.18 Score=42.23 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=31.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..++..|.+|+++.+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999988543
No 327
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=92.44 E-value=0.19 Score=41.60 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+|+|||+|..|+-.|..|+..|.+||+++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence 5899999999999999999999999999885
No 328
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.43 E-value=0.27 Score=43.44 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=36.0
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHN 86 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~ 86 (227)
+++++|+++|..+...+. ..+.+.+.+|..+.+|+||+|.|..
T Consensus 187 G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred CcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcc
Confidence 579999999999886332 3577888999999999999999973
No 329
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=92.42 E-value=0.16 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|+|||+|.+|+-.|..|.+.|.+|+++++.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999999843
No 330
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.35 E-value=0.22 Score=41.79 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=33.9
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+..+++++|+|.|.+|..+|..|...|.+|+++.|...
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 55689999999999999999999999999999988543
No 331
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.34 E-value=0.18 Score=37.05 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=28.2
Q ss_pred CCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH 149 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~ 149 (227)
.++|+|+|.|..|.++|..|.+.|. +++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 4789999999999999999999875 7999977
No 332
>PLN02985 squalene monooxygenase
Probab=92.34 E-value=0.16 Score=46.14 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+=+|..|++.|.+|+++++.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 47999999999999999999999999999985
No 333
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.28 E-value=0.2 Score=42.73 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=30.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||+|.+|..+|..++..|.+|+++.+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999998853
No 334
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.24 E-value=0.15 Score=42.69 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=30.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 5799999999999999999999999999988543
No 335
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=92.23 E-value=0.15 Score=45.20 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=28.0
Q ss_pred eEEEEccCccHHHHHHHHHh----ccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEK----VAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~----~~~~Vtli~~ 149 (227)
.|+|||||.+|+=+|..|++ .|.+|+++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 48999999999999999998 6899999998
No 336
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.16 E-value=0.19 Score=44.94 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.6
Q ss_pred eEEEEccCccHHHHHHHHHhcc---CeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~ 150 (227)
+|+|||||.+|.-+|..|++.+ .+|+|+++.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 5899999999999999999987 789999885
No 337
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.05 E-value=0.34 Score=40.46 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+++|||.+. .|.=+|+.|.+.+..||+.+.+.
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T 191 (284)
T PRK14170 153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT 191 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 356799999999776 56779999998899999998843
No 338
>PLN02487 zeta-carotene desaturase
Probab=92.04 E-value=0.21 Score=45.98 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 489999999999999999999999999999843
No 339
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.04 E-value=0.46 Score=42.14 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=50.6
Q ss_pred EEEEccCccHHHHH-HHHH----hccCeEEEEeecCccccc---------cC---CCceEEcCCccEEeC--Cce---EE
Q psy810 121 VLLVGFGPSGVDIA-MDIE----KVAKNVFLSHHISVAFKH---------QI---GDSVVQKPDIKRLLQ--DSV---VF 178 (227)
Q Consensus 121 v~VvGgG~~g~e~a-~~l~----~~~~~Vtli~~~~~~~~~---------~~---~~~i~~~~~i~~~~~--~~v---~~ 178 (227)
=+|++.|.+|+|.+ ..+. +.|.+|+++.+.++.+.. .+ .-.+..+..+.++.. +++ ..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~ 297 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT 297 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 36789999999998 6664 359999999775443211 11 124444556666642 222 23
Q ss_pred cCCC--EEeccEEEEccccccccc
Q psy810 179 QDDT--SHPFDSIIYCTGAYKYSY 200 (227)
Q Consensus 179 ~~g~--~i~~D~vi~atG~~~~~~ 200 (227)
.+|. .+.+|.+|+|+| ..++.
T Consensus 298 ~~g~~~~i~AD~VVLAtG-rf~s~ 320 (422)
T PRK05329 298 RNHGDIPLRARHFVLATG-SFFSG 320 (422)
T ss_pred eCCceEEEECCEEEEeCC-CcccC
Confidence 4454 478999999999 65544
No 340
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=91.98 E-value=0.18 Score=45.45 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=28.4
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~ 150 (227)
.|+|||||-+|+-+|..|++. +.+|+|+++.
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 489999999999999999997 8899999883
No 341
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.98 E-value=0.4 Score=40.03 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|-=+|+.|.+.+..||+.++..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T 192 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT 192 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC
Confidence 56799999999766 67789999988899999998843
No 342
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=91.91 E-value=0.19 Score=44.78 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=28.6
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|+|||+|+.|..+|..+.+.+.+|.|+++
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 499999999999999999999999999987
No 343
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.90 E-value=0.37 Score=40.21 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T 190 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT 190 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC
Confidence 56799999999766 57789999998899999998743
No 344
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=91.88 E-value=0.18 Score=47.05 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=30.0
Q ss_pred CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~ 151 (227)
-.|+|||+|++|+-+|..|++. |.+|+++++++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 4699999999999999999995 99999999864
No 345
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.87 E-value=0.23 Score=41.51 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=30.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|+|+|+|.+|..+|..+++.|.+|+++.+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999988543
No 346
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.81 E-value=0.4 Score=41.62 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc-------CeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVA-------KNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~-------~~Vtli~~~~ 151 (227)
..+|.|+|+|..|.-+|..|.+.+ .+|+|+.|+.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 458999999999999999999876 6899998854
No 347
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.81 E-value=0.22 Score=45.12 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=30.4
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
-.|+|||||.+|+.+|..++.+|-+|.|+++++
T Consensus 13 ~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D 45 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45 (532)
T ss_pred CCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence 469999999999999999999999999998853
No 348
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.78 E-value=0.31 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.+++++|+|+ |.+|..++..+.+.+.+|+++.|..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 456789999997 9999999999999888999998853
No 349
>PRK09897 hypothetical protein; Provisional
Probab=91.77 E-value=0.22 Score=45.46 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=27.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccC--eEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~ 150 (227)
++|+|||+|++|+-+|..|.+.+. +|+|++++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 479999999999999999987643 79999874
No 350
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.73 E-value=0.4 Score=40.12 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T 189 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT 189 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999766 67789999998899999998843
No 351
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=91.70 E-value=0.22 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.2
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
|+|||+|.+|+-.|..+++.|.+|.|++...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 8999999999999999999999999998854
No 352
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=91.64 E-value=0.28 Score=41.60 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+|||+|.+|+=+|..+++.|++|-++.+++
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~ 34 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN 34 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence 47899999999999998888899999999953
No 353
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.56 E-value=0.42 Score=40.10 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+++|||.+. .|.=+|+.|.+.+..||+.|...
T Consensus 156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T 194 (294)
T PRK14187 156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT 194 (294)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC
Confidence 356799999999766 56779999998899999998843
No 354
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.56 E-value=0.42 Score=39.99 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T 193 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT 193 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999766 56779999988899999998743
No 355
>PRK11445 putative oxidoreductase; Provisional
Probab=91.54 E-value=0.22 Score=42.76 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|.+|.-+|..|++. .+|+++++.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 8999999854
No 356
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.53 E-value=0.23 Score=44.39 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC----E-EeccEEEE
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT----S-HPFDSIIY 191 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~----~-i~~D~vi~ 191 (227)
.+++|+|+|.|-+|.-+|..|.+.|.+|+++.+..... .+.. ...+...++.+..|. . -.+|.||.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~~~------~~~l~~~gi~~~~~~~~~~~~~~~dlVV~ 83 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LGEV------SNELKELGVKLVLGENYLDKLDGFDVIFK 83 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---chHH------HHHHHhCCCEEEeCCCChHHhccCCEEEE
Confidence 46899999999999999999999999999988643111 0000 001111222221111 1 25899999
Q ss_pred cccccccccccccc
Q psy810 192 CTGAYKYSYKLTFL 205 (227)
Q Consensus 192 atG~~~~~~~~~~l 205 (227)
..| ..++. +.+
T Consensus 84 Spg-i~~~~--p~~ 94 (458)
T PRK01710 84 TPS-MRIDS--PEL 94 (458)
T ss_pred CCC-CCCCc--hHH
Confidence 999 88877 655
No 357
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.48 E-value=0.43 Score=39.85 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|-=+|+.|.+.+..||+.|++.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T 191 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 191 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999776 56779999988899999998843
No 358
>PLN02612 phytoene desaturase
Probab=91.45 E-value=0.33 Score=44.75 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|||+|.+|+-.|..|.+.|.+|+++++++
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 346789999999999999999999999999999843
No 359
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.41 E-value=0.4 Score=43.41 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=35.1
Q ss_pred eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
+.++++++|.+|...++ +.|.|.++++ .+.+|+||+|+|.|.
T Consensus 232 v~i~~~t~V~~I~~~~~--~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 232 ISINLNTEVLNIERSND--SLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred EEEEeCCEEEEEEecCC--CeEEEEECCC-EEEeCEEEECcChhH
Confidence 67899999999986433 5688988887 699999999999865
No 360
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.39 E-value=0.24 Score=44.69 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC----EE-eccEEEE
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT----SH-PFDSIIY 191 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~----~i-~~D~vi~ 191 (227)
.+++|+|+|.|.+|.-++..|.+.|.+|++..++...... + ...++.+..+. .+ .+|.||.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~-l-------------~~~g~~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP-H-------------AERGVATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-H-------------HhCCCEEEcCcchHhHhhcCCEEEE
Confidence 5789999999999999999999999999998753221110 0 00111121111 12 4799999
Q ss_pred cccccccccccccc
Q psy810 192 CTGAYKYSYKLTFL 205 (227)
Q Consensus 192 atG~~~~~~~~~~l 205 (227)
+.| ..++. +.+
T Consensus 77 SpG-i~~~~--p~~ 87 (488)
T PRK03369 77 SPG-FRPTA--PVL 87 (488)
T ss_pred CCC-CCCCC--HHH
Confidence 999 98887 655
No 361
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.38 E-value=0.28 Score=41.09 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=30.9
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 6799999999999999999999999999988543
No 362
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.35 E-value=0.47 Score=39.93 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T 192 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT 192 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999766 67789999998899999998743
No 363
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.34 E-value=0.26 Score=41.67 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 469999999999999999999999999999854
No 364
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=91.30 E-value=0.26 Score=44.06 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999999999874
No 365
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.26 E-value=0.3 Score=41.31 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=29.2
Q ss_pred CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~ 152 (227)
++|+|+|.|.+|.-+|..|...+ .++.|+.+...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 47999999999999999998876 58999988443
No 366
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.22 E-value=0.24 Score=41.50 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=31.1
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+.+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 67999999999999999999999999999885443
No 367
>PTZ00367 squalene epoxidase; Provisional
Probab=91.22 E-value=0.24 Score=45.63 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.-.|+|||||..|+-+|..|.+.|.+|++++|..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3469999999999999999999999999999853
No 368
>KOG1346|consensus
Probab=91.12 E-value=0.44 Score=41.92 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.8
Q ss_pred CceEEcCCCEEeccEEEEccccccccccccccCCcc
Q psy810 174 DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFS 209 (227)
Q Consensus 174 ~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~g 209 (227)
+-|++.||.+|.+|..++||| .+|.. ++.|+..+
T Consensus 288 ~~V~LnDG~~I~YdkcLIATG-~~Pk~-l~~~~~A~ 321 (659)
T KOG1346|consen 288 KKVILNDGTTIGYDKCLIATG-VRPKK-LQVFEEAS 321 (659)
T ss_pred CeEEecCCcEeehhheeeecC-cCccc-chhhhhcC
Confidence 348999999999999999999 88864 35555443
No 369
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=91.10 E-value=0.27 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=28.1
Q ss_pred EEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810 121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI 150 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~ 150 (227)
|+|||+|.+|+-.|..+++.| .+|+|+++.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~ 32 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKM 32 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecC
Confidence 899999999999999999999 899999874
No 370
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.03 E-value=0.54 Score=39.24 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T 191 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT 191 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999776 56779999988888999998743
No 371
>PLN02568 polyamine oxidase
Probab=91.01 E-value=0.35 Score=44.23 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc-----CeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVA-----KNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~-----~~Vtli~~~~ 151 (227)
..+|+|||+|.+|+-+|..|.+.| .+|++++++.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~ 43 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGD 43 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCC
Confidence 357999999999999999999876 7899999854
No 372
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.98 E-value=0.32 Score=40.34 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~ 150 (227)
.+...+|+|+|.|-.|.++|..|++.| .+++|+...
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456789999999999999999999997 689999873
No 373
>PLN02676 polyamine oxidase
Probab=90.94 E-value=0.3 Score=44.15 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~ 151 (227)
+..+|+|||+|.+|+-+|..|.+.|. +|+++++++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 34579999999999999999999986 699998854
No 374
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=90.93 E-value=0.3 Score=46.68 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++|+|||+|.+|+-.|..|.+.|.+|++++.+.
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4689999999999999999999999999998853
No 375
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=90.91 E-value=0.43 Score=43.79 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCCeEEEEccCccHHHHHHHHHhc----cCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~ 150 (227)
..++++|||+|.+|+-.|..|.+. |.+|+|+++.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~ 58 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEEL 58 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCC
Confidence 357899999999999999999985 5799999875
No 376
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.91 E-value=0.25 Score=41.61 Aligned_cols=79 Identities=14% Similarity=0.062 Sum_probs=54.8
Q ss_pred eeEEEcCEEEEccCCCCCCCCCCCCCCCcc--------------cceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHH
Q psy810 71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLF--------------RGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMD 136 (227)
Q Consensus 71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~--------------~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~ 136 (227)
-..+.|..|-.+-|. .|.+-++..+... .|+.+...-+. -..+.+|+|+|||..|.+.|..
T Consensus 112 vtaIayETV~~~~g~--lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvp---GV~~~kv~iiGGGvvgtnaAki 186 (371)
T COG0686 112 VTAIAYETVQLPDGN--LPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVP---GVLPAKVVVLGGGVVGTNAAKI 186 (371)
T ss_pred cceEEEEEEEcCCCC--CcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCC---CCCCccEEEECCccccchHHHH
Confidence 367889999999988 7777666432110 12222222111 1235689999999999999999
Q ss_pred HHhccCeEEEEeecCccc
Q psy810 137 IEKVAKNVFLSHHISVAF 154 (227)
Q Consensus 137 l~~~~~~Vtli~~~~~~~ 154 (227)
...+|.+||++.+..+++
T Consensus 187 A~glgA~Vtild~n~~rl 204 (371)
T COG0686 187 AIGLGADVTILDLNIDRL 204 (371)
T ss_pred HhccCCeeEEEecCHHHH
Confidence 999999999998865544
No 377
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.89 E-value=0.54 Score=39.31 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+++|||.+. .|-=+|+.|.+.+..||+.+++.
T Consensus 155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T 193 (284)
T PRK14177 155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT 193 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 356799999999766 66779999998899999998743
No 378
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.88 E-value=0.56 Score=39.11 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T 192 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT 192 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 56799999999665 67789999988899999998743
No 379
>KOG1298|consensus
Probab=90.85 E-value=0.33 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|-.|.-+|..|.+.|.+|++++|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4999999999999999999999999999994
No 380
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=90.78 E-value=0.59 Score=39.37 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus 163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T 201 (299)
T PLN02516 163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT 201 (299)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 356799999999776 57779999998899999998843
No 381
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.76 E-value=0.49 Score=39.45 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.|++|+|+|.+ ..|.-+|+.|.+.+..||+.+++.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t 186 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT 186 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh
Confidence 5679999999998 788889999999999999998854
No 382
>PRK04148 hypothetical protein; Provisional
Probab=90.75 E-value=0.44 Score=35.22 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
.++++++||.| .|.++|..|.+.|.+|+.+...+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 35789999999 999999999999999999987443
No 383
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.68 E-value=0.57 Score=39.21 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+. +..||+.|++.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T 191 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS 191 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC
Confidence 56799999999776 577799999887 78999988743
No 384
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.61 E-value=0.47 Score=39.99 Aligned_cols=37 Identities=30% Similarity=0.558 Sum_probs=33.1
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
...+++++|+|.|.+|..++..|.+.|.+|+++.|+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3458999999999999999999999999999998854
No 385
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.60 E-value=0.39 Score=41.16 Aligned_cols=36 Identities=8% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~ 150 (227)
++.+++++|||+|.+|--+|.+|...| .+|++..|.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456899999999999999999999987 679999884
No 386
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.51 E-value=0.43 Score=40.33 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.+|.|+|.|..|.-+|..|.+.|.+|+++.|.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999884
No 387
>PLN03000 amine oxidase
Probab=90.45 E-value=0.36 Score=46.47 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.1
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++|+|||+|.+|+.+|..|.+.+.+|++++.++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 217 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK 217 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 4789999999999999999999999999999854
No 388
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.44 E-value=0.63 Score=38.94 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
++.||+++|||.+. .|-=+|+.|.+.+..||+.+.+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~ 191 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK 191 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC
Confidence 56799999999766 6777999998889999998774
No 389
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.42 E-value=0.43 Score=36.51 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEEEcc-CccHHHHHHHHHhccCeEEEEeecCccc
Q psy810 121 VLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVAF 154 (227)
Q Consensus 121 v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~~ 154 (227)
|+|+|+ |.+|-.++..|.+.+.+|+.+.|++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~ 35 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKA 35 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhc
Confidence 688996 9999999999999999999999965543
No 390
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.38 E-value=0.56 Score=40.36 Aligned_cols=45 Identities=9% Similarity=-0.050 Sum_probs=35.7
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP 89 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p 89 (227)
.+++++.+++|.++...+ +.+.+.++++ .+.+|+||+|+|.+...
T Consensus 162 ~gv~i~~~~~v~~i~~~~---~~~~v~~~~g-~~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 162 AGAELLFNEPVTAIEADG---DGVTVTTADG-TYEAKKLVVSAGAWVKD 206 (376)
T ss_pred CCCEEECCCEEEEEEeeC---CeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence 467888899999987633 4677888777 69999999999996543
No 391
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.35 E-value=0.5 Score=40.29 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=35.6
Q ss_pred CCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 110 YRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 110 ~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-++...+.+++|.|||-|.+|..+|..|...|-+|++..+.
T Consensus 8 d~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 8 DANVELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred cCChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc
Confidence 34556778999999999999999999999999999988663
No 392
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=90.30 E-value=0.57 Score=39.46 Aligned_cols=45 Identities=13% Similarity=-0.144 Sum_probs=33.8
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV 88 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~ 88 (227)
.+..++.+++|..+...+. ..+.+.++++ .+.+|+||+|+|.+..
T Consensus 150 ~g~~~~~~~~v~~i~~~~~--~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 150 LGVEIIEHTEVQHIEIRGE--KVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred cCCEEEccceEEEEEeeCC--EEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 3568889999999885331 2345677777 7999999999999653
No 393
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=90.27 E-value=0.34 Score=43.90 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=28.5
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~ 149 (227)
.|+|||||-+|+-+|..|++. +.+|+|++|
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 599999999999999999998 789999999
No 394
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.25 E-value=0.41 Score=40.12 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=30.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..++..|.+|+++.+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6799999999999999999999999999988543
No 395
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.74 Score=38.37 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+.+++++|.| +|.+|..+|..|.+.|.+|+++.|.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355678999998 4789999999999999999999874
No 396
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=90.19 E-value=0.82 Score=40.13 Aligned_cols=45 Identities=18% Similarity=-0.041 Sum_probs=34.2
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP 89 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p 89 (227)
.++.++++++|.++...+ +.+.+.++ +..+.+|+||+|+|..+.|
T Consensus 118 ~gv~i~~~~~V~~i~~~~---~~~~v~~~-~~~i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 118 LGVEILTNSKVKSIKKDD---NGFGVETS-GGEYEADKVILATGGLSYP 162 (400)
T ss_pred CCCEEEeCCEEEEEEecC---CeEEEEEC-CcEEEcCEEEECCCCcccC
Confidence 367899999999986532 56777765 4479999999999985543
No 397
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.18 E-value=0.33 Score=43.90 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=28.2
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~ 150 (227)
.|+|||||.+|+-+|.+|.+. +.+|+|+++.
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~ 39 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERL 39 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 599999999999999999985 6799999985
No 398
>PLN02661 Putative thiazole synthesis
Probab=90.14 E-value=0.33 Score=41.85 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCCCCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeec
Q psy810 112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHI 150 (227)
Q Consensus 112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~ 150 (227)
+..++..-.|+|||+|.+|+-+|..+++. +.+|+++++.
T Consensus 86 ~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~ 125 (357)
T PLN02661 86 DMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS 125 (357)
T ss_pred hhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 33444456799999999999999999875 7899999885
No 399
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.12 E-value=0.4 Score=37.97 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~ 150 (227)
.+..++|+|+|.|..|.++|..|++.|. +++++.+.
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3456899999999999999999999987 69999874
No 400
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.11 E-value=0.48 Score=41.80 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|++|+|+|.|.+|.-+|..+...|.+|+++.+.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 468999999999999999999999999999887643
No 401
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.11 E-value=0.35 Score=43.81 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=28.4
Q ss_pred CeEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~ 150 (227)
-.|+|||||.+|+-+|..|++.+ .+|+|+++.
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 46999999999999999999863 589999885
No 402
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=90.07 E-value=0.37 Score=43.45 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=29.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~ 33 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYL 33 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 38999999999999999999999999999853
No 403
>KOG0685|consensus
Probab=90.00 E-value=0.52 Score=41.92 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~ 151 (227)
...+|+|||+|.+|+-.|..|.+. ..+|++++.++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 345899999999999999999965 56888888743
No 404
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.93 E-value=0.52 Score=36.08 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=29.7
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.++.+|+|+|+|.+|...+..+..+|.+|+.+....
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 456899999999999999999999999999997743
No 405
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.92 E-value=0.54 Score=42.11 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..+.|++|+|+|.|.+|..+|..+..+|.+|+++++.
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d 286 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEID 286 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567999999999999999999999999999988764
No 406
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=89.91 E-value=0.38 Score=40.07 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.6
Q ss_pred EEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810 121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV 152 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~ 152 (227)
++|||+|..|.=+|..|++.+ .+|.|+++++.
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred EEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 789999999999999999986 58999999653
No 407
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.85 E-value=0.39 Score=43.14 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=28.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.++|||+|+.|...|..+++.|.+|.++.+
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 599999999999999999999999999997
No 408
>PRK07121 hypothetical protein; Validated
Probab=89.79 E-value=0.42 Score=43.12 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~ 52 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERA 52 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35999999999999999999999999999864
No 409
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.73 E-value=0.57 Score=39.02 Aligned_cols=38 Identities=8% Similarity=0.308 Sum_probs=33.1
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV 152 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~ 152 (227)
...+++++|+|+|-+|--++..|...+ .+|+++.|...
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 456789999999999999999999888 89999999543
No 410
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.66 E-value=0.65 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~ 151 (227)
..+++++|+|+|.+|..++..+.+.+ .+|+++.|..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 45789999999999999999999884 7899998743
No 411
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.58 E-value=0.53 Score=40.99 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=50.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEE-cCCccEEe----CC-ceEEcCCCE---EeccEEE
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQ-KPDIKRLL----QD-SVVFQDDTS---HPFDSII 190 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~-~~~i~~~~----~~-~v~~~~g~~---i~~D~vi 190 (227)
++.|+|.|+.|+-.+..|++.|.+|+.+.-...++...-.....+ .+.++++- .+ .+.++.... -.+|.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f 81 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF 81 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence 689999999999999999999999999977443322111111111 12233331 12 266654432 3799999
Q ss_pred Ecccccccc
Q psy810 191 YCTGAYKYS 199 (227)
Q Consensus 191 ~atG~~~~~ 199 (227)
+|+| .-++
T Consensus 82 Iavg-TP~~ 89 (414)
T COG1004 82 IAVG-TPPD 89 (414)
T ss_pred EEcC-CCCC
Confidence 9999 6555
No 412
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.56 E-value=0.6 Score=40.04 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+..|++|.|||-|.+|-.+|..+..+|-+|..+.|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4567999999999999999999999999999888763
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.43 E-value=0.49 Score=40.22 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.4
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++.|+|+|.+|.-+|..|.+.+.+|+++.|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999843
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.41 E-value=0.87 Score=39.21 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=46.2
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec---------------------CccccccCCC-----ceEEc--CCccEE
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI---------------------SVAFKHQIGD-----SVVQK--PDIKRL 171 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~---------------------~~~~~~~~~~-----~i~~~--~~i~~~ 171 (227)
.|+|||||+.|.-.|.+.++.|.+-=++..+ .+.+...+.. .|.+. -+..++
T Consensus 213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l 292 (520)
T COG3634 213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL 292 (520)
T ss_pred eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence 5999999999999999999877554333211 0011001111 11110 012222
Q ss_pred eC----C---ceEEcCCCEEeccEEEEcccc
Q psy810 172 LQ----D---SVVFQDDTSHPFDSIIYCTGA 195 (227)
Q Consensus 172 ~~----~---~v~~~~g~~i~~D~vi~atG~ 195 (227)
.. + .|++.+|..+.+-.+|++||+
T Consensus 293 ~~a~~~~~l~ev~l~nGavLkaktvIlstGA 323 (520)
T COG3634 293 EPAAVEGGLIEVELANGAVLKARTVILATGA 323 (520)
T ss_pred eecCCCCccEEEEecCCceeccceEEEecCc
Confidence 22 2 388999999999999999993
No 415
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.40 E-value=0.65 Score=39.75 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
....+++|.|||.|.+|..+|..|...|.+|+.+.+.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY 178 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3567899999999999999999999999999999874
No 416
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.39 E-value=0.43 Score=42.69 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCCCeEEEEccCccHHH-HHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---EE-eccEEE
Q psy810 116 FRDQNVLLVGFGPSGVD-IAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---SH-PFDSII 190 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e-~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~i-~~D~vi 190 (227)
.+++++.|+|.|-+|+- +|..|.+.|.+|++........ ...+...++.+..|. .+ .+|.||
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~-------------~~~l~~~gi~~~~~~~~~~~~~~d~vv 71 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAV-------------TQRLLELGAIIFIGHDAENIKDADVVV 71 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChH-------------HHHHHHCCCEEeCCCCHHHCCCCCEEE
Confidence 35678999999999999 7999999999999887632210 001111122221111 12 489999
Q ss_pred EccccccccccccccC
Q psy810 191 YCTGAYKYSYKLTFLA 206 (227)
Q Consensus 191 ~atG~~~~~~~~~~l~ 206 (227)
...| ..++. +++.
T Consensus 72 ~spg-i~~~~--~~~~ 84 (461)
T PRK00421 72 YSSA-IPDDN--PELV 84 (461)
T ss_pred ECCC-CCCCC--HHHH
Confidence 9999 98887 6553
No 417
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=89.39 E-value=0.3 Score=42.87 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|||+|++|+-+|..+++.+.+|+|+++.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999998753
No 418
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=89.38 E-value=0.55 Score=41.51 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
...+|+|+|+|.+|+-.|.+|.+.|.+|++++.++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~ 40 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD 40 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccC
Confidence 35689999999999999999999999999998754
No 419
>PRK08401 L-aspartate oxidase; Provisional
Probab=89.36 E-value=0.47 Score=42.57 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=28.9
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
..|+|||+|.+|+-.|..+++.|.+|.|++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999999999774
No 420
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.30 E-value=0.6 Score=41.12 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 568999999999999999999999999999987643
No 421
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.27 E-value=0.4 Score=43.51 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
-++|.|||+|.+|..+|..+++.|.+|+++.+....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 467999999999999999999999999999886443
No 422
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.26 E-value=0.73 Score=31.39 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=27.7
Q ss_pred eEEEEccCccHHHHHHHHHhcc---CeEEEE-eecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLS-HHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli-~~~~ 151 (227)
++.|||+|.+|.-++..|.+.+ .+|+++ .|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5889999999999999999988 899977 5543
No 423
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=89.23 E-value=0.48 Score=45.29 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.2
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~ 151 (227)
+|+|||||.+|+=+|..|.+. |.+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999988 78999999854
No 424
>PRK06847 hypothetical protein; Provisional
Probab=89.22 E-value=0.93 Score=39.01 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=35.4
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
.+++++++++|.+++..+ +.+.+.+.+++.+.+|.||.|+|.++
T Consensus 120 ~gv~v~~~~~v~~i~~~~---~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 120 AGADVRLGTTVTAIEQDD---DGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred hCCEEEeCCEEEEEEEcC---CEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 356899999999987533 55777777778899999999999954
No 425
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.13 E-value=0.81 Score=38.53 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~ 150 (227)
.++.||+++|||.+. .|.=+|+.|.+. +..||+.+++
T Consensus 157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~ 198 (297)
T PRK14168 157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR 198 (297)
T ss_pred CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC
Confidence 356799999999766 567788888877 6889999874
No 426
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=88.99 E-value=0.61 Score=41.26 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV 152 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~ 152 (227)
..+++++|+|+|.+|..++..|...| .+|+++.|...
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ 215 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE 215 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 56789999999999999999999887 78999988543
No 427
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.96 E-value=0.58 Score=39.48 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=30.0
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
++|.|||.|.+|..+|..+++.|.+|+++.+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 679999999999999999999899999998744
No 428
>PRK09620 hypothetical protein; Provisional
Probab=88.96 E-value=0.74 Score=37.30 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCCeEEEEcc-----------------CccHHHHHHHHHhccCeEEEEee
Q psy810 117 RDQNVLLVGF-----------------GPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 117 ~~~~v~VvGg-----------------G~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.|++|+|-+| |.+|..+|..|...|.+|+++++
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4677777765 89999999999999999999986
No 429
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.94 E-value=0.91 Score=38.23 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+. +..||+.|++.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T 195 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT 195 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC
Confidence 56799999999766 577788888876 67899987743
No 430
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.92 E-value=0.91 Score=37.97 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHh--ccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEK--VAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~--~~~~Vtli~~~ 150 (227)
++.||+++|||.+. .|.=+|..|.+ .+..||+.+++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~ 193 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG 193 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC
Confidence 56799999999765 67778988887 67889999874
No 431
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.87 E-value=0.8 Score=39.19 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 110 YRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 110 ~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-++...+.+++|.|||.|.+|.-+|..|...|.+|.+..+.
T Consensus 9 d~~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 9 DADLSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred CCChhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34445667899999999999999999999989888877663
No 432
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=88.81 E-value=0.83 Score=39.30 Aligned_cols=42 Identities=7% Similarity=-0.132 Sum_probs=28.8
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecC-----CeeEEEcCEEEEccCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANE-----EITLHYNLLQSLPSSH 85 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~-----~~~~~~~~~vilAtG~ 85 (227)
.+.++.+++|.+++..++ +.+.+... ....+.+|+||+|||-
T Consensus 293 ~~~l~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGD--GGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES---SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCC--CEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 467888999999987653 47777543 3578999999999995
No 433
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=88.71 E-value=0.52 Score=42.74 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=29.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+=.|..+++.|.+|.|+++.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~ 93 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKM 93 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 35999999999999999999999999999874
No 434
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.49 E-value=1.2 Score=41.77 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=35.3
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
++.++++++|.++...+ +.|.+.++++..+.+|.||+|+|.+.
T Consensus 421 Gv~i~~~~~V~~i~~~~---~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 421 QLTIHFGHEVARLERED---DGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEEeCCEeeEEEEeC---CEEEEEECCCcEEECCEEEECCCCCc
Confidence 46888899999987533 56888888887788999999999965
No 435
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.49 E-value=0.83 Score=39.32 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=33.2
Q ss_pred eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH 85 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~ 85 (227)
.+|+++++|.+|+..+ ++..+...+++.+.||+||+|+..
T Consensus 224 ~~i~l~~~V~~I~~~~---~~v~v~~~~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 224 GEIRLNTPVTRIERED---GGVTVTTEDGETIEADAVISAVPP 263 (450)
T ss_dssp GGEESSEEEEEEEEES---SEEEEEETTSSEEEESEEEE-S-H
T ss_pred ceeecCCcceeccccc---cccccccccceEEecceeeecCch
Confidence 4799999999999755 677888888889999999999987
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.48 E-value=0.66 Score=36.72 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~ 150 (227)
..+..++|+|+|.|..|.++|..|.+.|. +++++.+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 34567899999999999999999999975 89999873
No 437
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=88.47 E-value=0.59 Score=33.29 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=29.7
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA 153 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~ 153 (227)
|+|+|+|.|.++++++..+.++|.++.++...++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~ 37 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT 37 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence 68999999999999999999999988888774443
No 438
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.47 E-value=1 Score=37.82 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+. +..||+.|.+.
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T 195 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS 195 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC
Confidence 56799999999766 567788888876 57899998743
No 439
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.42 E-value=0.74 Score=35.00 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.+||-|.+|..+|..|.+.|.+|+++.|...
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4799999999999999999999999999988543
No 440
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.33 E-value=0.51 Score=39.26 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||.|.+|..+|..+++.|.+|+++.+.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999987443
No 441
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.19 E-value=0.93 Score=36.35 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810 116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+.+++++|.|+ |.+|.+++..|.+.|.+|+++.|...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45788999985 88999999999999999999998543
No 442
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.18 E-value=0.66 Score=39.86 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~ 150 (227)
.+..++|+|||.|..|.++|..|++.|. +++++.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4557899999999999999999999985 89999883
No 443
>PLN02928 oxidoreductase family protein
Probab=88.12 E-value=0.86 Score=39.33 Aligned_cols=37 Identities=16% Similarity=0.489 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
....|+++.|+|-|.+|-++|..+..+|-+|+.+.|.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 3567899999999999999999999999999988763
No 444
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.11 E-value=0.81 Score=39.83 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|+|+|.+|..++..+..+|.+|+++.++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 356789999999999999999999999999998854
No 445
>PRK09414 glutamate dehydrogenase; Provisional
Probab=88.11 E-value=1.2 Score=39.69 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
...+++|+|.|.|++|..+|..|.+.|.+|.-+..
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 45689999999999999999999999988887743
No 446
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.97 E-value=0.96 Score=36.70 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=33.8
Q ss_pred CCCCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810 112 VPDPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 112 ~~~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+.+..+.++++|.|+ |.+|..++..|.+.+.+|+.+.|...
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 444556789999995 99999999999999999998888543
No 447
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.89 E-value=0.73 Score=38.93 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=29.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+|.|+|.|.+|.-+|..|.+.+.+|+++.|..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999998853
No 448
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=87.85 E-value=0.66 Score=41.11 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.9
Q ss_pred eEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~ 150 (227)
.|+|||||-+|+-+|..|+++. .+|+|+++.
T Consensus 5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~ 37 (429)
T COG0579 5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKE 37 (429)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 5999999999999999999997 899999885
No 449
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=87.82 E-value=0.58 Score=43.00 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=27.7
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~V~lleK~ 31 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLNTAVISKV 31 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 899999999999999999999999999763
No 450
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.82 E-value=1.3 Score=40.10 Aligned_cols=44 Identities=7% Similarity=0.053 Sum_probs=33.6
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEe---cCCe--eEEEcCEEEEccCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFA---NEEI--TLHYNLLQSLPSSHNS 87 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~---~~~~--~~~~~~~vilAtG~~~ 87 (227)
++.++++++|.+++..++ +.|.+. +..+ ..+.+|+||+|.|+|.
T Consensus 199 Gv~i~~~~~V~~I~~~~d--~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 199 NAQVKYNHEVVDLERLSD--GGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CcEEEeCCEEEEEEECCC--CCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 578899999999876422 568775 3444 2689999999999966
No 451
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.74 E-value=0.72 Score=39.35 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=29.6
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+|.|||.|.+|.-+|..|.+.|.+|+++.|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999984
No 452
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=87.74 E-value=1.3 Score=39.64 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=34.0
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV 88 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~ 88 (227)
.++.++.++.|..++. . +.+.+.+.++ .+.+|+||+|||++..
T Consensus 196 ~Gv~i~~~t~V~~i~~-~---~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 196 LGVEIHENTPMTGLEE-G---QPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred cCCEEECCCeEEEEee-C---CceEEEeCCc-EEECCEEEEccccccc
Confidence 3678888999998874 1 4577888877 5999999999998653
No 453
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=87.54 E-value=0.71 Score=41.96 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=27.7
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+| +|+-.|..+++.|.+|.|+++.
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 59999999 9999999999999999999864
No 454
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.53 E-value=1 Score=42.18 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
-.|+|||+|.+|+-.|..+++.|.+|.|++.
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 3699999999999999999998999999974
No 455
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.51 E-value=1.2 Score=35.86 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
+.+++++|.|+ |.+|..++..|.+.|.+|.++.|..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35688999987 9999999999999999999998843
No 456
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.44 E-value=1 Score=39.44 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=32.9
Q ss_pred CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.....+++|.|||.|.+|-.+|..+..+|-+|..+.+
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 3456789999999999999999999999999988865
No 457
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.38 E-value=0.9 Score=36.70 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC---eEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK---NVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~---~Vtli~~~ 150 (227)
.+.+++++|+|+|.+|.-+|..|.+.|. +|+++.|.
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4567899999999999999999988864 69999985
No 458
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.37 E-value=0.8 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=30.5
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
.+|.|+|.|.+|.-+|..|.+.|.+|+++.|...
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999543
No 459
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.34 E-value=1 Score=40.13 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
++.+++|+|.|.|+.|...|..|.+.|.+|+.++.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 56789999999999999999999999999988655
No 460
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.33 E-value=0.78 Score=41.69 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.1
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999988544
No 461
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.31 E-value=0.86 Score=38.63 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~ 151 (227)
..+++|+|+|+|.+|..++..+... +.+|+++.|..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4578999999999999999999875 46899998854
No 462
>KOG4716|consensus
Probab=87.27 E-value=4.7 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=27.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
.++|||||.-|+-+|.+.+.+|++|.++.-
T Consensus 21 DLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 21 DLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 489999999999999999999999988854
No 463
>KOG0405|consensus
Probab=87.26 E-value=5.4 Score=34.53 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=27.3
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH 149 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~ 149 (227)
..+|||||.=|+-.|...+..|.+|-|++.
T Consensus 22 DylvIGgGSGGvasARrAa~~GAkv~l~E~ 51 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHGAKVALCEL 51 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcCceEEEEec
Confidence 488999999999999999999999988876
No 464
>PLN02494 adenosylhomocysteinase
Probab=87.22 E-value=1 Score=40.35 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..|++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999999999999999987743
No 465
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.21 E-value=0.89 Score=33.61 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=27.6
Q ss_pred eEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~ 150 (227)
+|+|+|.|..|.++|..|.+.|. +++++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999975 79999763
No 466
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.15 E-value=1.1 Score=38.15 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
...+++|.|+|-|.+|-++|..+..+|-+|+.+.+.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~ 168 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRS 168 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999999999999999999988763
No 467
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=86.94 E-value=1.6 Score=38.11 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=33.9
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
.++.++++++|.++...+ +.+.+.+.++ .+.+|.||+|+|.+.
T Consensus 162 ~Gv~i~~~~~V~~i~~~~---~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHA---NGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred CCCEEEcCCEEEEEEecC---CeEEEEECCC-EEEeCEEEECCCcch
Confidence 356888899999987533 4577777776 699999999999854
No 468
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.93 E-value=1.1 Score=37.96 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
....+|++.|+|-|.+|.++|..+..+|-+|..+.|.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4567999999999999999999988889999988774
No 469
>PLN02976 amine oxidase
Probab=86.91 E-value=1.1 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.6
Q ss_pred CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.++|+|||+|.+|+-+|..|.+.|.+|+++.++
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~ 725 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR 725 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeec
Confidence 478999999999999999999999999999984
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=86.87 E-value=1.2 Score=38.08 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810 117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+++++|.|+ |.+|..++..|.+.|.+|+.+.|..
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 38 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDP 38 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence 4688999986 9999999999999999999888743
No 471
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=86.84 E-value=1.2 Score=39.39 Aligned_cols=44 Identities=9% Similarity=-0.207 Sum_probs=30.2
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHN 86 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~ 86 (227)
.+..+..+.+|.++...+. ....+.+.++ ..+.+|++|||+|+|
T Consensus 276 ~Gg~il~g~~V~~i~~~~~--~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 276 LGGVMLPGDRVLRAEFEGN--RVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred CCCEEEECcEEEEEEeeCC--eEEEEEecCCccceEECCEEEEccCCC
Confidence 3456777889988775432 2233444443 479999999999997
No 472
>PRK09126 hypothetical protein; Provisional
Probab=86.80 E-value=1.6 Score=37.82 Aligned_cols=44 Identities=14% Similarity=-0.030 Sum_probs=35.5
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
.+++++++++|.+++..+ +.+.+..++++.+.+|.||.|.|..+
T Consensus 124 ~g~~i~~~~~v~~~~~~~---~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDD---DGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred CCcEEEcCCeEEEEEEcC---CeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 367899999999987533 45777777777899999999999843
No 473
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.79 E-value=0.72 Score=43.03 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=28.5
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 5999999999999999999999999999774
No 474
>KOG1800|consensus
Probab=86.72 E-value=1 Score=39.15 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=30.2
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF 154 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~ 154 (227)
+|.|||+|++|.-.|..|.+. +.+|+++++.+..+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 899999999999999999885 57899999865443
No 475
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.71 E-value=0.75 Score=42.60 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=28.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+-.|..+++.|.+|+|++..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 35999999999999999999889999999874
No 476
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=86.68 E-value=0.86 Score=41.77 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=29.1
Q ss_pred eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810 120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.|+|||+|.+|+-.|..+++.|.+|.|+++.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 59999999999999999999999999998743
No 477
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=86.66 E-value=0.83 Score=42.14 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.2
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~ 41 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKE 41 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCeEEEEecC
Confidence 35999999999999999999999999999874
No 478
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.60 E-value=1.1 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=27.1
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
|+|+|.|..|.+++..|.+.+.+|+++.+...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999997668999998443
No 479
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=86.58 E-value=1.5 Score=38.93 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=36.6
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeE-EEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITL-HYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~-~~~~~vilAtG~~~ 87 (227)
.+..+++|++|..|++.++ +.+.+.+.+++. ++++.||.|.|...
T Consensus 166 ~g~~i~ln~eV~~i~~~~d--g~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 166 NGVELRLNTEVTGIEKQSD--GVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred cCCEEEecCeeeEEEEeCC--ceEEEEecCCcEEEEeeEEEECCchhH
Confidence 4779999999999998664 367777777755 99999999999743
No 480
>PRK07804 L-aspartate oxidase; Provisional
Probab=86.52 E-value=0.81 Score=41.90 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=28.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
-.|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~ 48 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKA 48 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEcc
Confidence 35999999999999999999989999999774
No 481
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=86.48 E-value=0.65 Score=43.14 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=27.5
Q ss_pred EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810 121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~ 30 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYV 30 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEec
Confidence 689999999999999999999999999874
No 482
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.47 E-value=0.98 Score=38.84 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI 150 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~ 150 (227)
.+...+|+|||.|..|.++|..|++.|. +++++.+.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4456899999999999999999999976 89999873
No 483
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.47 E-value=1.6 Score=38.05 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=35.2
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
++++++++++.+++..+ +.+.+...++..+.+|.||.|.|.++
T Consensus 126 gv~v~~~~~v~~i~~~~---~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 126 DIGLLANARLEQMRRSG---DDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred CCEEEcCCEEEEEEEcC---CeEEEEECCCCEEEeCEEEEecCCCc
Confidence 56788899999987533 56778777777899999999999955
No 484
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=86.47 E-value=1.3 Score=35.81 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCCCCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecC
Q psy810 111 RVPDPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 111 ~~~~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
.+..++.+++++|.| +|.+|..+|..|.+.|.+|+++.|..
T Consensus 5 ~~~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 5 LELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred hhhhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 334445688999998 48899999999999999999998854
No 485
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.39 E-value=0.95 Score=40.98 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=30.8
Q ss_pred CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810 119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
++|.|||+|.+|..+|..+++.|.+|+++.+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999988543
No 486
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=86.38 E-value=1.5 Score=37.30 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=31.2
Q ss_pred CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810 116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~ 151 (227)
..+++|+|.|+ |++|.+++..|.+.|.+|+++.|..
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence 45688999986 9999999999999999999987743
No 487
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.36 E-value=1.2 Score=36.54 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCCeEEEEccCccHHHHHHHHHhcc-----------CeEEEEee
Q psy810 117 RDQNVLLVGFGPSGVDIAMDIEKVA-----------KNVFLSHH 149 (227)
Q Consensus 117 ~~~~v~VvGgG~~g~e~a~~l~~~~-----------~~Vtli~~ 149 (227)
+..+|+|||.|..|.+++..|++.| .+++++..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~ 53 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDD 53 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECC
Confidence 4678999999999999999999863 28899876
No 488
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.33 E-value=1.2 Score=38.70 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810 117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
.+++|+|.|+ |++|..++..|.+.|.+|+.+.|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4678999997 999999999999999999999874
No 489
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=86.24 E-value=1.4 Score=37.88 Aligned_cols=40 Identities=5% Similarity=-0.076 Sum_probs=30.7
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP 89 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p 89 (227)
++.++.+++|.+++. + .+.+.++ .+.+|+||+|+|.+...
T Consensus 160 Gv~i~~~t~V~~i~~-----~--~v~t~~g-~i~a~~VV~A~G~~s~~ 199 (365)
T TIGR03364 160 GVEFHWNTAVTSVET-----G--TVRTSRG-DVHADQVFVCPGADFET 199 (365)
T ss_pred CCEEEeCCeEEEEec-----C--eEEeCCC-cEEeCEEEECCCCChhh
Confidence 677888899998863 2 5666666 47899999999996543
No 490
>KOG2852|consensus
Probab=86.20 E-value=0.44 Score=39.89 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred CCeEEEEccCccHHHHHHHHHhcc------CeEEEEeec
Q psy810 118 DQNVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHI 150 (227)
Q Consensus 118 ~~~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~ 150 (227)
-++++|||||-+|+-.|.+|.+.. ..||+++.+
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 489999999999999999999875 579999875
No 491
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=86.19 E-value=1.7 Score=37.72 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=34.7
Q ss_pred ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
+++++++++|.++...+ +.+.+.+.++..+.+|.||.|+|.++
T Consensus 127 gv~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 127 GVQLHCPARVVALEQDA---DRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEcCCeEEEEEecC---CeEEEEECCCCEEEeCEEEEecCCCc
Confidence 57888999999987533 56777777777899999999999954
No 492
>KOG2820|consensus
Probab=86.16 E-value=1 Score=38.52 Aligned_cols=53 Identities=6% Similarity=-0.079 Sum_probs=42.4
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPS 93 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~ 93 (227)
.+..++.+..|..+...+.......|.|.++..+.++++|+++|+|-...+|.
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 45677888888888766655667788888888899999999999977666664
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.09 E-value=1.3 Score=37.01 Aligned_cols=36 Identities=8% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810 116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS 151 (227)
Q Consensus 116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~ 151 (227)
..+++++|+|+|-+|--++..|...| .+|+++.|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 45789999999999999999999886 5799999854
No 494
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=86.09 E-value=0.88 Score=42.31 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=28.2
Q ss_pred eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810 120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI 150 (227)
Q Consensus 120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~ 150 (227)
.|+|||+|.+|+-.|..+++. |.+|.|+++.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 599999999999999999987 8899999864
No 495
>PRK06057 short chain dehydrogenase; Provisional
Probab=86.09 E-value=1.4 Score=35.71 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810 116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV 152 (227)
Q Consensus 116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~ 152 (227)
+.+++++|+|+ |.+|..++..|.+.|.+|.++.|...
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45789999987 89999999999999999999988543
No 496
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.09 E-value=1.6 Score=36.51 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCCCCeEEEEccCc-cHHHHHHHHHh----ccCeEEEEeecC
Q psy810 115 PFRDQNVLLVGFGP-SGVDIAMDIEK----VAKNVFLSHHIS 151 (227)
Q Consensus 115 ~~~~~~v~VvGgG~-~g~e~a~~l~~----~~~~Vtli~~~~ 151 (227)
++.||+++|||.+. .|.=+|+.|.+ .+..||+.+.+.
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t 195 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT 195 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc
Confidence 56799999999776 56779998988 778899988743
No 497
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.95 E-value=1.2 Score=38.08 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810 116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI 150 (227)
Q Consensus 116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~ 150 (227)
+..++|+|.|| |++|..++..|.+.+.+|+.+.|.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45689999996 999999999999999999998774
No 498
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=85.95 E-value=1.7 Score=37.36 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=33.5
Q ss_pred cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810 41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS 87 (227)
Q Consensus 41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~ 87 (227)
.++.++.+++|.++...+ +.+.+.+.++ .+.+|+||+|+|.+.
T Consensus 158 ~g~~~~~~~~V~~i~~~~---~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 158 HGATVRDGTKVVEIEPTE---LLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred cCCEEECCCeEEEEEecC---CeEEEEeCCC-EEEeCEEEEecCcch
Confidence 356788889999987532 5577777666 699999999999854
No 499
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=85.88 E-value=1.5 Score=38.98 Aligned_cols=40 Identities=5% Similarity=-0.015 Sum_probs=33.2
Q ss_pred eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810 43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH 85 (227)
Q Consensus 43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~ 85 (227)
.+|+++++|.+|+..+ +.|.+++++++.+.||+||+|+-.
T Consensus 238 ~~i~~~~~V~~I~~~~---~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRG---SNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecC---CcEEEEECCCcEEEcCEEEECCCH
Confidence 4699999999998633 568888877778999999999986
No 500
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.87 E-value=1.1 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810 115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH 149 (227)
Q Consensus 115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~ 149 (227)
.+..++|+|+|.|..|.++|..|++.|. +++++..
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4457899999999999999999999865 7888866
Done!